RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019519
(340 letters)
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 501 bits (1293), Expect = e-180
Identities = 213/319 (66%), Positives = 249/319 (78%)
Query: 22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
+ P KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V
Sbjct: 2 AKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVV 61
Query: 82 AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
G++G QL AL D++I+PAGVPRKPGMTRDDLF INAGIVK LC IAK CP AIV
Sbjct: 62 RGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIV 121
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201
N+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA TF A ++ +V+VPVV
Sbjct: 122 NLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 181
Query: 202 GGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAI 261
GGHAG+TILPL SQ P ++ E+I LT R Q+GGTEVVEAKAG GSATLSMAYA
Sbjct: 182 GGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVK 241
Query: 262 FADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE 321
FADACL+GL G V+EC+FV S VTELPFFASKVRLG+NG+EEV LGPL+++E+ GLE
Sbjct: 242 FADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLE 301
Query: 322 KLKPELKASIEKGVKFANA 340
K K EL SIEKGV F +
Sbjct: 302 KAKKELAGSIEKGVSFIRS 320
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 495 bits (1277), Expect = e-178
Identities = 188/310 (60%), Positives = 238/310 (76%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
L L+ DVV+IPAGVPRKPGMTRDDLFN NA IV L +A A++CP+A++ +ISNPVN
Sbjct: 62 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
ST+PI AEVFKK G YN K+FGVTTLD+VRA F A ++ A V+VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269
+PL SQ TPK + + + LT R Q+ GTEVV+AKAG GSATLSMAYAGA F + +
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241
Query: 270 LNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA 329
+NG VVECSFV+S T+ P+F++ + LGK G+E+ LG+G +S FE++ + + PELKA
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 301
Query: 330 SIEKGVKFAN 339
SI+KG +F
Sbjct: 302 SIKKGEEFVK 311
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 475 bits (1224), Expect = e-170
Identities = 172/312 (55%), Positives = 213/312 (68%), Gaps = 4/312 (1%)
Query: 30 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
KVAVLGAAGGIGQ LALL+K P S L+LYDIA TPGVA D+ HI T ++ G+ G
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60
Query: 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
+ ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L +AK CP A + +I+NP
Sbjct: 61 EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGI 207
VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF A EV VPV+GGH+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
TILPL SQ P + ++++ LTKR Q+ GTEVVEAKAG GSATLSM A A F + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239
Query: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPEL 327
+ L G VVEC++V+ FF+ + LGKNGVEE +G LS FEQ LE + L
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTL 299
Query: 328 KASIEKGVKFAN 339
K I G +F N
Sbjct: 300 KKDIALGEEFVN 311
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 193 bits (492), Expect = 3e-59
Identities = 77/318 (24%), Positives = 123/318 (38%), Gaps = 25/318 (7%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGYMG 86
K+ ++GAAG IG +A + L L LYD GVA ++ H E
Sbjct: 9 EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRH--CGFEGLNLTF 66
Query: 87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI-VNMIS 145
+ +AL D+ ++ G PRK GMTR+DL NA I L I YCP+ V +I
Sbjct: 67 TSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF 126
Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGH 204
NP + T + +G ++ + LD R ++ A + + V N GGH
Sbjct: 127 NPADITGLVT---LIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH 182
Query: 205 AGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLS 254
G + S A L +E L +R GG +++ + S+ S
Sbjct: 183 -GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR--GRSSFQS 239
Query: 255 MAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSD 314
+Y A + G +V E A + + K+GV+ ++
Sbjct: 240 PSYVSIEMIRAAMGGEAFR--WPAGCYVNVPGFEHIMMAMETTITKDGVKHSDINQLGNE 297
Query: 315 FEQEGLEKLKPELKASIE 332
E+ L++ L +
Sbjct: 298 AERAALKESYSHLAKLRD 315
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 166 bits (424), Expect = 2e-49
Identities = 86/328 (26%), Positives = 138/328 (42%), Gaps = 52/328 (15%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----AADVGHINTRSEVAGYM 85
KV+V+GAAG +G + L + + DI + AAD H Y
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH------GIAYD 55
Query: 86 GNDQLGQA----LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
N ++ Q SDVV+I AG+PR+PG TR DL NA I++D+ S++ ++ + I
Sbjct: 56 SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
SNPV+ + +AG + +++ G LD R + + + + V V +
Sbjct: 116 LTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTI 171
Query: 201 VGGHAGITILPLFSQAT---PKANLADEDIKALTKRTQDGGTEVVEAKA----GKGSATL 253
+G H G +P+FS+ + + ++ + L Q+ +V+E K G
Sbjct: 172 LGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVA 230
Query: 254 SMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
M AI D L+G G D F V LG NGVEE
Sbjct: 231 HM--VEAILHDTGEVLPASVKLEGEFGHEDT--------------AFGVPVSLGSNGVEE 274
Query: 306 VLGLGPLSDFEQEGLEKLKPELKASIEK 333
++ L D+EQ+ + +L +K
Sbjct: 275 IVEW-DLDDYEQDLMADAAEKLSDQYDK 301
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 164 bits (419), Expect = 1e-48
Identities = 91/329 (27%), Positives = 148/329 (44%), Gaps = 52/329 (15%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
KV V+GA G +G +A + + + + DI + G A D+ + V G
Sbjct: 2 KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG 60
Query: 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
ND EDSDV II AG+PR PGM+RDDL N IV + + P++ + +
Sbjct: 61 --TNDY--GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
++NP++ + V +A + ++ G+ LD R ++F A + +V+V +V ++G
Sbjct: 117 VANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172
Query: 203 GHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
GH G T++PL T P L D I+ + +RT+ G E+V+ SA +
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGA 229
Query: 258 AG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVE 304
A AI D A G G+ D+ F V+LG GVE
Sbjct: 230 AAAEMTEAILKDNKRILPCAAYCDGEYGLDDL--------------FIGVPVKLGAGGVE 275
Query: 305 EVLGLGPLSDFEQEGLEKLKPELKASIEK 333
EV+ + L E+ L+ + ++++
Sbjct: 276 EVIEV-DLDADEKAQLKTSAGHVHSNLDD 303
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 163 bits (415), Expect = 3e-48
Identities = 97/329 (29%), Positives = 156/329 (47%), Gaps = 51/329 (15%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
K+ V+GA G +G A + L L L D+ G A D+ ++V G
Sbjct: 2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60
Query: 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
ND +SD+VII AG+PRKPGMTR+DL NAGIVK++ I K+ N I+ +
Sbjct: 61 --SNDY--ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
+SNP++ I V ++++ G+ LD R ++F A + V++ ++N V+G
Sbjct: 117 VSNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLG 172
Query: 203 GHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
GH G ++P+ T P ++L E I L +RT++GG E+VE +GSA + A
Sbjct: 173 GH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPAS 230
Query: 258 AG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVE 304
+ +I D L+G G+ F V+LG+NGVE
Sbjct: 231 SVVEMVESIVLDRKRVLPCAVGLEGQYGIDKT--------------FVGVPVKLGRNGVE 276
Query: 305 EVLGLGPLSDFEQEGLEKLKPELKASIEK 333
++ + L + + L+K + + +
Sbjct: 277 QIYEI-NLDQADLDLLQKSAKIVDENCKM 304
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 163 bits (415), Expect = 4e-48
Identities = 82/333 (24%), Positives = 142/333 (42%), Gaps = 54/333 (16%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGH----INTRSEV 81
KV ++GA+G +G ALL+ P + L L + G+ D+ + + +
Sbjct: 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 82 AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
+ + +++SDVVII +GVPRK GM+R DL NA IV IA+ C I
Sbjct: 62 YVESDENL--RIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF 119
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
+I+NPV+ + + ++FG+ T LD +R K A V++ EV +
Sbjct: 120 -VITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRI 174
Query: 201 VGGHAGITILPLFSQATPK-------ANLADEDIKALTKRTQDGGTEVVEAKA----GKG 249
+G H G +++PL S + + I + + + G +++ K G
Sbjct: 175 IGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGPA 233
Query: 250 SATLSMAYAGAIFAD--------ACLKGL-NGVPDVVECSFVQSTVTELPFFASKVRLGK 300
+A L++ I + A + G +G+ DV V++G+
Sbjct: 234 AAILNV--VRCIVNNEKRLLTLSAYVDGEFDGIRDV--------------CIGVPVKIGR 277
Query: 301 NGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
+G+EEV+ + L E K +K E+
Sbjct: 278 DGIEEVVSI-ELDKDEIIAFRKSAEIIKKYCEE 309
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 162 bits (412), Expect = 1e-47
Identities = 71/337 (21%), Positives = 139/337 (41%), Gaps = 58/337 (17%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
+KV ++G G +G A M + + D+ T G A D+ +
Sbjct: 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLED------AQAFTA 58
Query: 87 NDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
++ +D+D+V+I AG P+KPG +R DL N N I+ + + + I
Sbjct: 59 PKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
+ +NPV+ I K + ++++ G T+LD R + + NV+ V+ ++
Sbjct: 119 VAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM 174
Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKA----G 247
G H G + +S AT + ++D+D+ L ++ +++ K G
Sbjct: 175 GEH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYG 233
Query: 248 KGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLG 299
G+A + + + AI D A + G G+ D+ + + +G
Sbjct: 234 IGTALMRI--SKAILRDENAVLPVGAYMDGQYGLNDI--------------YIGTPAIIG 277
Query: 300 KNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVK 336
G+++++ PLS E + ++ LK + G+
Sbjct: 278 GTGLKQIIES-PLSADELKKMQDSAATLKKVLNDGLA 313
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 161 bits (411), Expect = 2e-47
Identities = 93/335 (27%), Positives = 146/335 (43%), Gaps = 57/335 (17%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
RK+AV+G+ G IG +A ++ + L + + L+DIA G A D+ H + S+V
Sbjct: 5 RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G +D + SDVVII A +P +P R +L NA I+ + + KYCPNA V
Sbjct: 63 G--TDDY--ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVI 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
I+NP++ + F+K K+ G+ LD R +TF A VN ++V+ V+
Sbjct: 119 CITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVI 174
Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
GGH G ++P S + + + E I + T+ EV + G+A
Sbjct: 175 GGH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTA 232
Query: 252 TLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRL 298
+ A A A D A GV + + +
Sbjct: 233 YFAPAAAAVKMAEAYLKDKKAVVPCSAFCSNHYGVKGI--------------YMGVPTII 278
Query: 299 GKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
GKNGVE++L L L+ EQ+ L + E+ +
Sbjct: 279 GKNGVEDILEL-DLTPLEQKLLGESINEVNTISKV 312
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 161 bits (409), Expect = 3e-47
Identities = 97/339 (28%), Positives = 160/339 (47%), Gaps = 54/339 (15%)
Query: 22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA----DVGH--- 74
++ ++ +KV+V+GA G G A L+ L + + L DI D+
Sbjct: 2 NAMTIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASP 59
Query: 75 -INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
+ + G +D DSDVV+I AG+ RKPGM+RDDL N+ I+K + IA
Sbjct: 60 VQGFDANIIG--TSDY--ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIA 115
Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
K+ PNAI+ +++NPV+ K + ++++ G LD R +TF A + N++
Sbjct: 116 KHSPNAIIVVLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLS 171
Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAG 247
V ++ V+GGH G ++PL + P L E ++A+ +RT+ GG E+V G
Sbjct: 172 VKDITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLG 229
Query: 248 KGSATLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFAS 294
GSA + A + AI D A L+G G D+ +
Sbjct: 230 NGSAYYAPAASLVEMTEAILKDQRRVLPAIAYLEGEYGYSDL--------------YLGV 275
Query: 295 KVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
V LG NG+E+++ L L E+E L++ ++ ++
Sbjct: 276 PVILGGNGIEKIIEL-ELLADEKEALDRSVESVRNVMKV 313
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 160 bits (408), Expect = 3e-47
Identities = 91/330 (27%), Positives = 153/330 (46%), Gaps = 52/330 (15%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
+K++++GA G +G A + L + L DI G A D+ V
Sbjct: 3 KKISIIGA-GFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G N+ +SDV+++ +G PRKPGM+R+DL +NA I + S A PNA++
Sbjct: 61 G--TNNY--ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVII 116
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
M++NP++ + + + ++++ G LD R +TF A +A V+V +V ++
Sbjct: 117 MVNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLM 172
Query: 202 GGHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
GGH G ++PL + P + A + + + +RT+ GG E+V GSA + A
Sbjct: 173 GGH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPA 230
Query: 257 YAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGV 303
A A+ D A L G G+ D+ +F V LG GV
Sbjct: 231 AATAQMVEAVLKDKKRVMPVAAYLTGQYGLNDI--------------YFGVPVILGAGGV 276
Query: 304 EEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
E++L L PL++ E L ++A+++
Sbjct: 277 EKILEL-PLNEEEMALLNASAKAVRATLDT 305
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 161 bits (409), Expect = 4e-47
Identities = 101/341 (29%), Positives = 157/341 (46%), Gaps = 57/341 (16%)
Query: 23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
+ + +K++++GA G IG +ALL+ L + ++DI G A D+ H I
Sbjct: 9 NTVIMRKKISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIG 66
Query: 77 TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
+ +++ G N+ + L++SDVVII AGVPRKP MTR DL +NA IV + + KYC
Sbjct: 67 SPAKIFG--ENNY--EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC 122
Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAE 195
PNA V I+NP++ FK+ K+ G+ LD R + + V ++
Sbjct: 123 PNAFVICITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSD 178
Query: 196 VNVPVVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAK 245
V+ VVGGH G ++PL S T + + I + K+T GG E+VE
Sbjct: 179 VSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL 237
Query: 246 AGKGSATLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFF 292
GSA + A + A D L G V ++ F
Sbjct: 238 -KTGSAFYAPAASAVAMAQAYLKDSKSVLVCSTYLTGQYNVNNL--------------FV 282
Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
V +GKNG+E+V+ + LSD E+ K ++ ++
Sbjct: 283 GVPVVIGKNGIEDVVIV-NLSDDEKSLFSKSVESIQNLVQD 322
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 158 bits (402), Expect = 3e-46
Identities = 97/335 (28%), Positives = 150/335 (44%), Gaps = 57/335 (17%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
K+A++G+ G IG LA L L L + L+DIA G D+ ++
Sbjct: 8 NKIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT 65
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G ND A+E +DVVI+ AGVPRKPGM+RDDL IN +++ + + I KY P A V
Sbjct: 66 G--ANDY--AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVI 121
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
I+NP++ +K K+ G+ LD R + F + + NV+V +V V V+
Sbjct: 122 CITNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVL 177
Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
GGH G +++PL +T + + + + +RT+DGG E+V GSA
Sbjct: 178 GGH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSA 235
Query: 252 TLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRL 298
+ A + + D A L G GV D+ + +
Sbjct: 236 FYAPAASAIQMAESYLKDKKRVLPVAAQLSGQYGVKDM--------------YVGVPTVI 281
Query: 299 GKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
G NGVE ++ + L E+ +K + E
Sbjct: 282 GANGVERIIEI-DLDKDEKAQFDKSVASVAGLCEA 315
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 158 bits (401), Expect = 5e-46
Identities = 76/336 (22%), Positives = 129/336 (38%), Gaps = 61/336 (18%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
KV ++G G +G A + +V L + D+ G D+ H R +
Sbjct: 7 NKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVK 65
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
Y D+D+V+I AG +KPG TR DL + N I K + + + I
Sbjct: 66 AGEY-------SDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGI 118
Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
+ +NPV+ I A K ++++ G T LD R + + +V V+
Sbjct: 119 FLVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQ 174
Query: 200 VVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKA--- 246
++G H G T LP++S A + I+ + +T+D ++++AK
Sbjct: 175 IIGEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATY 233
Query: 247 -GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVR 297
G + AIF + A L+G DV +
Sbjct: 234 YGVAMGLARI--TEAIFRNEDAVLTVSALLEGEYEEEDV--------------YIGVPAV 277
Query: 298 LGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
+ +NG+ V+ + PL+D EQ LK + +
Sbjct: 278 INRNGIRNVVEI-PLNDEEQSKFAHSAKTLKDIMAE 312
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 157 bits (400), Expect = 6e-46
Identities = 78/328 (23%), Positives = 137/328 (41%), Gaps = 53/328 (16%)
Query: 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAGY 84
+ +LGA G +G A+++ + L L G A D+ H + ++G
Sbjct: 2 ITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG- 58
Query: 85 MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
N + + SD+V++ AG+ RKPGMTR+ L NA + DL I Y +AIV +
Sbjct: 59 -SNSY--EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVIT 115
Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGG 203
+NPV+ V K + +++ G LD R + + K V+ VN V+G
Sbjct: 116 TNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGM 171
Query: 204 HAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAGK-----GSATL 253
H G + P+ ++ P +L E+I+ + T + G ++ E + + +
Sbjct: 172 H-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLV 230
Query: 254 SMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
AI D L+G G D+ +GK+G+E
Sbjct: 231 LT--VEAIKRDSKRIYPYSLYLQGEYGYNDI--------------VAEVPAVIGKSGIER 274
Query: 306 VLGLGPLSDFEQEGLEKLKPELKASIEK 333
++ L PL++ E+ ++ +K +E
Sbjct: 275 IIEL-PLTEDEKRKFDEAVQAVKKLVET 301
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 157 bits (400), Expect = 9e-46
Identities = 78/338 (23%), Positives = 142/338 (42%), Gaps = 59/338 (17%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
+KV ++G G +G A M L + + + DI T G A D+ + +
Sbjct: 10 QKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN------ALPFTS 62
Query: 87 NDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
++ +D+D+V+I AG P+KPG TR DL N N I+K + I N I
Sbjct: 63 PKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
+ +NPV+ I K + + ++ G T+LD R + A NV+ V+ ++
Sbjct: 123 VAANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIM 178
Query: 202 GGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKA---- 246
G H G T P++S A + ++ + + + +D E+++ K
Sbjct: 179 GEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFY 237
Query: 247 GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRL 298
G +A + + AI D + G G+ D+ + + +
Sbjct: 238 GIATALARI--SKAILNDENAVLPLSVYMDGQYGLNDI--------------YIGTPAVI 281
Query: 299 GKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVK 336
+NG++ +L + PL+D E+E ++K +LK +
Sbjct: 282 NRNGIQNILEI-PLTDHEEESMQKSASQLKKVLTDAFA 318
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 157 bits (400), Expect = 1e-45
Identities = 69/340 (20%), Positives = 121/340 (35%), Gaps = 62/340 (18%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
KVA++GA G +G A + + L + D+ G D+ H ++
Sbjct: 6 NKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS 64
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
Y + +D+D+V I AG +KPG TR +L N I K + S + + I
Sbjct: 65 YGTY-------EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGI 117
Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
+ +NPV+ I K ++++ G TTLD R + + V
Sbjct: 118 FLVATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAH 173
Query: 200 VVGGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKA-- 246
++G H G T LP++S A E++ + ++ ++E K
Sbjct: 174 IIGEH-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGAT 232
Query: 247 --GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKV 296
G + + AI + L G G DV +
Sbjct: 233 YYGVAMSLARI--TKAILHNENSILTVSTYLDGQYGADDV--------------YIGVPA 276
Query: 297 RLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVK 336
+ + G+ + L L++ E+E LK ++
Sbjct: 277 VVNRGGIAGITEL-NLNEKEKEQFLHSAGVLKNILKPHFA 315
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 156 bits (398), Expect = 1e-45
Identities = 74/338 (21%), Positives = 124/338 (36%), Gaps = 62/338 (18%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
+V V+GA G +G + + + L D G A D H
Sbjct: 7 ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW 65
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
Y D+D+V+I AG +KPG TR DL + N I + + ++ +
Sbjct: 66 HGDY-------DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGL 118
Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
+ +NPV+ I K +++ G T LD R + +V V+
Sbjct: 119 FLVATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAY 174
Query: 200 VVGGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKA-- 246
++G H G T LP++SQA K A +D++ + +D +++E K
Sbjct: 175 IIGEH-GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGAT 233
Query: 247 --GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKV 296
G + AI + A L GL G DV +
Sbjct: 234 YYGIAMGLARV--TRAILHNENAILTVSAYLDGLYGERDV--------------YIGVPA 277
Query: 297 RLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKG 334
+ +NG+ EV+ + L+D E+ LK+ + +
Sbjct: 278 VINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLARA 314
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 155 bits (394), Expect = 5e-45
Identities = 84/347 (24%), Positives = 139/347 (40%), Gaps = 66/347 (19%)
Query: 22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----I 75
+ +V K+AV+GA G +G LA + + L DIA D+ H
Sbjct: 1 AETTVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFY 59
Query: 76 NTRSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
T S + D+D+V+I AG +KPG +R +L I+K + +
Sbjct: 60 PTVSIDGSDDP-------EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLV 112
Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
K PNAI +I+NPV+ IA V +K E ++FG T LD R + A + VN
Sbjct: 113 KVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVN 168
Query: 193 VAEVNVPVVGGHAGITILPLFSQAT-------------PKANLADEDIKALTKRTQDGGT 239
V V+ + G H G + +PL+ AT L + + + + ++
Sbjct: 169 VKNVHAYIAGEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAY 227
Query: 240 EVVEAKAGKGSAT----LSMAY-AGAIFAD--------ACLKGLNGVPDVVECSFVQSTV 286
+++ GKG+ +S A+ D + LK +G+ D+
Sbjct: 228 KIIN---GKGATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGISDI---------- 274
Query: 287 TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
+ L + GV + P+SD E L++ LK + +
Sbjct: 275 ----CMSVPTLLNRQGVNNTINT-PVSDKELAALKRSAETLKETAAQ 316
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 154 bits (393), Expect = 7e-45
Identities = 104/324 (32%), Positives = 156/324 (48%), Gaps = 34/324 (10%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
+K+ ++GA G IG LA L + L + L+DIA G A D+ +V
Sbjct: 6 KKITLVGA-GNIGGTLAHLALIKQL-GDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVR 63
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G ND + LE+SDVVI+ AGVPRKPGM+RDDL IN +++ + I CPNA V
Sbjct: 64 G--TNDY--KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVI 119
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
I+NP++ I + +K + K+ G+ LD R +TF A + NV+V +V V+
Sbjct: 120 CITNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVM 175
Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
GGH G T++PL + + L E + A+ RT+ GG E+V GSA
Sbjct: 176 GGH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSA 233
Query: 252 TLSMAYAGAIFADACLKGLNGV-PDVVECSFVQSTVTELPFFASKVRLGKNGVEEV-LGL 309
+ A AG A++ LK + P + + E F + NGV + +
Sbjct: 234 YYAPAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPIEV-- 291
Query: 310 GPLSDFEQEGLEKLKPELKASIEK 333
+SD E+E L+ +K +
Sbjct: 292 -EISDKEREQLQVSINAIKDLNKA 314
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 155 bits (394), Expect = 7e-45
Identities = 77/337 (22%), Positives = 141/337 (41%), Gaps = 55/337 (16%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH-INTRSEVAGYM 85
+KVA++G+ G IG + L L L + LYD+ G A D+ H +
Sbjct: 10 KKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67
Query: 86 GNDQLGQALEDSDVVIIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAI 140
AL +D VI+ AG+ + PG +R+DL N+ I++++ I KYCP
Sbjct: 68 AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127
Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
+ +++NP++ +V +A + G+ LD R + + A +V+ +V
Sbjct: 128 IIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQAT 183
Query: 200 VVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKG 249
V+G H G ++PL T + ++ ++ + + T+ G E+V G+G
Sbjct: 184 VIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-GQG 241
Query: 250 SATLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKV 296
SA + A + + D G G+ D+ F
Sbjct: 242 SAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLKDM--------------FIGLPA 287
Query: 297 RLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
+G G+E V+ L L++ E++ +K ++ A +
Sbjct: 288 VIGGAGIERVIEL-ELNEEEKKQFQKSVDDVMALNKA 323
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 154 bits (391), Expect = 2e-44
Identities = 86/341 (25%), Positives = 142/341 (41%), Gaps = 62/341 (18%)
Query: 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
KVA++GA G +G A M L + L L D+ G A D+ H
Sbjct: 4 VKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH------GL 56
Query: 83 GYMGNDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
+MG L ++D DV+++ AG RKPG TR DL N I K++ I KY +
Sbjct: 57 PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNH 116
Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVN 197
++ ++SNPV+ I + +K K+ G T LD +R + + K V+V V+
Sbjct: 117 GVILVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVH 172
Query: 198 VPVVGGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAK 245
++G H G + LPL+S PK N +ED K + + + G +++
Sbjct: 173 GYIIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK-- 229
Query: 246 AGKGSAT----LSMAY-AGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFF 292
KG+ +S+ + + + G+ G+ DV
Sbjct: 230 -NKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDV--------------AI 274
Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
+ + GV+EVL L+ E+E L ++K + +
Sbjct: 275 SLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVKKVLNE 314
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 154 bits (391), Expect = 2e-44
Identities = 86/334 (25%), Positives = 143/334 (42%), Gaps = 59/334 (17%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
K+ ++G G +G A + + + L D+ G A D+ H +
Sbjct: 2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH------GTPFTRR 54
Query: 88 DQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
+ L+ SDVVI+ AGVP+KPG TR L NA ++K++ ++KY P++IV +
Sbjct: 55 ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
++NPV+ + F K + +K+FG T LD R +T A + V+V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170
Query: 203 GHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKA----G 247
H G + +P++S A + ++ ++T+ E++E K
Sbjct: 171 EH-GDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERKGATHYA 229
Query: 248 KGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLG 299
A + +IF D L+ GV D+ + V LG
Sbjct: 230 IALAVADI--VESIFFDEKRVLTLSVYLEDYLGVKDL--------------CISVPVTLG 273
Query: 300 KNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
K+GVE +L L L++ E E K LK +I +
Sbjct: 274 KHGVERILEL-NLNEEELEAFRKSASILKNAINE 306
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 153 bits (389), Expect = 3e-44
Identities = 70/339 (20%), Positives = 123/339 (36%), Gaps = 61/339 (17%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
KV ++G+ G +G A + L + + L D+ A D+ H +
Sbjct: 2 KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILH------ATPFAHP 54
Query: 88 DQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
+ LE + V++ AGV ++PG TR L + NA + + + + P A++ +
Sbjct: 55 VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
+NPV+ + +V ++ G T LD R + A V V+ V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170
Query: 203 GHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKA---- 246
H G + + ++S A L+ ED + + + ++E K
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYY 229
Query: 247 GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRL 298
G G+ + AI D A + GV +V + L
Sbjct: 230 GIGAGLARL--VRAILTDEKGVYTVSAFTPEVAGVLEV--------------SLSLPRIL 273
Query: 299 GKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
G GV + LS E+ L + LK + + F
Sbjct: 274 GAGGVAGTVYP-SLSPEERAALRRSAEILKEAA-FALGF 310
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 153 bits (389), Expect = 4e-44
Identities = 82/347 (23%), Positives = 140/347 (40%), Gaps = 63/347 (18%)
Query: 24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INT 77
E VP K+ V+G G +G A+ + + L LAL D+ G D+ H + T
Sbjct: 15 EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKT 73
Query: 78 RSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
V+ Y +S +VII AG ++ G +R +L N I K + + KY
Sbjct: 74 PKIVSSKDY-------SVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY 126
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVA 194
P + ++SNPV+ I V K + + ++ G LD R + + V+
Sbjct: 127 SPQCKLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPL 182
Query: 195 EVNVPVVGGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVV 242
+ V+G H G + +P++S + E K + K+ D EV+
Sbjct: 183 SCHGWVLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVI 241
Query: 243 EAKA----GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELP 290
+ K G + + A +I + +KGL G+ + V S +P
Sbjct: 242 KLKGYTSWAIGLSVADL--AESIMKNLRRVHPISTMIKGLYGIKEDVFLS--------VP 291
Query: 291 FFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
LG+NG+ +V+ + L+ E+ L+K L K ++F
Sbjct: 292 -----CILGQNGISDVVKV-TLTPDEEARLKKSADTLWGIQ-KELQF 331
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 153 bits (388), Expect = 5e-44
Identities = 88/339 (25%), Positives = 145/339 (42%), Gaps = 62/339 (18%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
K+ ++G+ G IG +A L+ L + L+DI G A D H + +V+
Sbjct: 5 AKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS 62
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCP 137
G N L +DVVI+ AG + PG + RDDL +N I+ ++ I K CP
Sbjct: 63 G--SNTY--DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP 118
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEV 196
NA + +++NPV+ + ++ + + K+ G+ LD R K + + K NV +V
Sbjct: 119 NAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 174
Query: 197 NVPVVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKA 246
N +VG H G ++ L T ++D +++A+ RT + E+V A
Sbjct: 175 NAHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHA 233
Query: 247 ----GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFAS 294
+A + M A + D L+G G D+ F +
Sbjct: 234 SPYVAPAAAIIEM--AESYLKDLKKVLICSTLLEGQYGHSDI--------------FGGT 277
Query: 295 KVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
V LG NGVE+V+ L L+ E+ ++ E K
Sbjct: 278 PVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETKRMKAL 315
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 150 bits (380), Expect = 7e-43
Identities = 85/344 (24%), Positives = 132/344 (38%), Gaps = 49/344 (14%)
Query: 30 KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVA-------ADVGHI 75
+V V GAAG I L + K P++ L L DI GV D
Sbjct: 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMELQDCALP 62
Query: 76 NTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
+ +A D+ A +D DV I+ +PR+ GM R DL N I K +A+ KY
Sbjct: 63 LLKDVIAT----DKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY 118
Query: 136 CPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
++ V ++ NP N+ A+ K A + ++ +T LD RAK A K V
Sbjct: 119 AKKSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSD 175
Query: 195 EVNVPVVGGHAGITILPLFSQAT----PKANLADEDI-------KALTKRTQDGGTEVVE 243
+V ++ G+ T P + A K E + Q G V++
Sbjct: 176 DVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK 235
Query: 244 AKAGKGSATLSMAYAGAIFADACLKGLNGVP--DVVECSFVQST-----VTELPFFASKV 296
A+ SA A D G P + V + S V + ++ V
Sbjct: 236 AR-KLSSA----MSAAKAICDHVRDIWFGTPEGEFVSMG-IISDGNSYGVPDDLLYSFPV 289
Query: 297 RLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFANA 340
+ + V GL P++DF +E ++ EL E +F ++
Sbjct: 290 TIKDKTWKIVEGL-PINDFSREKMDLTAKELAEEKETAFEFLSS 332
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 147 bits (373), Expect = 3e-42
Identities = 87/327 (26%), Positives = 140/327 (42%), Gaps = 53/327 (16%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
K+ +GA G +G A LN V +AL DIA G A D+ H I+ ++ G
Sbjct: 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60
Query: 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
G D L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+ I + P + + +
Sbjct: 61 --GADY--SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
++NP++ + + K ++FG+ LD R K N+ ++G
Sbjct: 117 VTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIG 170
Query: 203 GHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYA 258
H G ++ S A + D +A+ + EV++ K G A M
Sbjct: 171 EH-GDSMFVAKSLADFD---GEVDWEAVENDVRFVAAEVIKRKGATIFGPAVAIYRM--V 224
Query: 259 GAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLG 310
A+ D L+G G+ +V +LGKNG EV +
Sbjct: 225 KAVVEDTGEIIPTSMILQGEYGIENV--------------AVGVPAKLGKNGA-EVADI- 268
Query: 311 PLSDFEQEGLEKLKPELKASIEKGVKF 337
LSD E E L L+ +E+ + +
Sbjct: 269 KLSDEEIEKLRNSAKILRERLEE-LGY 294
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 144 bits (366), Expect = 6e-41
Identities = 82/337 (24%), Positives = 116/337 (34%), Gaps = 61/337 (18%)
Query: 30 KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTP------GVA---ADVG 73
+VAV GAAG I L +L K P++ L L +I N GV D
Sbjct: 7 RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEIDDCA 64
Query: 74 HINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
A A +D+DV ++ PR PGM R DL NA I AI
Sbjct: 65 FPLLAGMTAH----ADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120
Query: 134 KYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
N V ++ NP N+ IA K A + K + LD RA + A K
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKP 177
Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANLADED---IKALTKRTQDGGTEVVEAK 245
V+ + V G+ T+ + A ++ ++D G +++A+
Sbjct: 178 VSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR 237
Query: 246 AGKGSATLSMAYAGAIFADACLK-------------GLNGVPDVVECSFVQSTVTELPFF 292
G SA + A D L G G+P+ V F P
Sbjct: 238 -GVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGF--------P-- 286
Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA 329
V + V GL + F QE + EL
Sbjct: 287 ---VTTENGEYKIVQGL-SIDAFSQERINVTLNELLE 319
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 141 bits (357), Expect = 1e-39
Identities = 84/340 (24%), Positives = 125/340 (36%), Gaps = 63/340 (18%)
Query: 30 KVAVLGAAGGIGQPLAL------LMKLNPLVSRLALYDIANTPGVAA---------DVGH 74
+VAV GAAG IG L ++ + V L L +I + A D
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI-LQLLEI--PQAMKALEGVVMELEDCAF 62
Query: 75 INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
A D A +D+D ++ PRK GM R DL +N I + A+A+
Sbjct: 63 PLLAGLEAT----DDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAE 118
Query: 135 YCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
+ V ++ NP N+ IA K A N + +T LD RAK A K V
Sbjct: 119 VAKKDVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGV 175
Query: 194 AEVNVPVVGGHAGITILPLFSQAT----PKANLADED--IKALTKRTQDGGTEVVEAKAG 247
+ V G+ T+ P A P L D + K G +++A+ G
Sbjct: 176 DRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-G 234
Query: 248 KGSATLSMAYA--------------GAIF-ADACLKGLNGVPDVVECSFVQSTVTELPFF 292
SA S A A G +G G+P+ + SF VT
Sbjct: 235 ASSA-ASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFP---VT----- 285
Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIE 332
K+G V+ +++F ++ +E EL +E
Sbjct: 286 ------AKDGAYRVVEGLEINEFARKRMEITAQELLDEME 319
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 140 bits (355), Expect = 2e-39
Identities = 63/329 (19%), Positives = 108/329 (32%), Gaps = 53/329 (16%)
Query: 22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTPGVAADVGHINTRSE 80
+ E+ K+ V+G G +G L + + RL L D++ T G D+ N +
Sbjct: 8 NHENKTVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNV 66
Query: 81 VAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
A S VVI + D+ N + + L A+ Y +
Sbjct: 67 EISKDL-------SASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQH 118
Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVN 197
+++ + S P V I V K T+ ++ G+ LD R + +
Sbjct: 119 SVLLVASQP----VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKE 174
Query: 198 VPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKA----GKGSATL 253
V V+G G + +S + + E++ K G +
Sbjct: 175 VWVIGEQ-GEDKVLTWSGQEE------VVSHTSQVQLSNRAMELLRVKGQRSWSVGLSVA 227
Query: 254 SMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
M +I + A KG + V S LP LG NGV E
Sbjct: 228 DM--VDSIVNNKKKVHSVSALAKGYYDINSEVFLS--------LP-----CILGTNGVSE 272
Query: 306 VLGLGPLSDFE-QEGLEKLKPELKASIEK 333
V+ L + E L+ + + ++
Sbjct: 273 VIKT-TLKEDTVTEKLQSSASSIHSLQQQ 300
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 139 bits (354), Expect = 2e-39
Identities = 80/331 (24%), Positives = 129/331 (38%), Gaps = 58/331 (17%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-----INTRSEVA 82
KV V+G G +G A + L S L L D A D+ H TR
Sbjct: 2 KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG 60
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
G+ L D+ VVI+ AG +KPG +R DL NA I ++L I + P+A++
Sbjct: 61 GH-------SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLL 113
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
+ SNPV+ + ++ + + G T LD R + A A V+ + V+
Sbjct: 114 VTSNPVD----LLTDLATQLAPGQ--PVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVL 167
Query: 202 GGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKAGKG 249
G H G + + +S A ++ + + T++ ++E GK
Sbjct: 168 GEH-GDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKR 223
Query: 250 SATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTE-------LPFFASKVRLGKNG 302
+ + A A +A L+ V V S T LP +G+ G
Sbjct: 224 ATYYGIGAALARITEAVLRDRRAVLTV-------SAPTPEYGVSLSLP-----RVVGRQG 271
Query: 303 VEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
V L L+ EQ+ LE+ L+ ++
Sbjct: 272 VLSTLHP-KLTGDEQQKLEQSAGVLRGFKQQ 301
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 136 bits (345), Expect = 1e-37
Identities = 69/345 (20%), Positives = 119/345 (34%), Gaps = 58/345 (16%)
Query: 22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----I 75
S E K+ V+G +G A+ + + L +AL D+ G D+ H +
Sbjct: 15 SQEPRSYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFL 73
Query: 76 NTRSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
+T V+G Y S +V+I AG ++ G +R +L N I K + I
Sbjct: 74 HTAKIVSGKDY-------SVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIV 126
Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
K+ P+ + + + K ++ G LD R + + V+
Sbjct: 127 KHSPDCLKELHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVH 182
Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAG 247
V V+G H G ++ ++S K + + ++ L T VV
Sbjct: 183 SCLVIGWVIGQH-GDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVD 241
Query: 248 KGSATLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFAS 294
+ + I D +K G+ D V S LP
Sbjct: 242 VLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVKDFYGIKDNVFLS--------LP---- 289
Query: 295 KVRLGKNGVEE--VLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
L NG+ ++ + L E++ L+K L K +KF
Sbjct: 290 -CVLN-NGISHCNIVKM-KLKPDEEQQLQKSATTLWDIQ-KDLKF 330
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 135 bits (343), Expect = 1e-37
Identities = 64/335 (19%), Positives = 122/335 (36%), Gaps = 56/335 (16%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH------INTRSE 80
RK+ ++G G +G +A + + D D +
Sbjct: 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV 60
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAGVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYC 136
+ + AL D+DVVI G + P R + +V+ + + + +
Sbjct: 61 INDW-------AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG 113
Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAE 195
+ ++ +ISNPV+ + +F+ + K+ G T LD R + +++
Sbjct: 114 FHGVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRS 169
Query: 196 VNVPVVGGHAGITILPLFSQAT----PKANLAD---EDIKALTKRTQDGGTEVVEAKAGK 248
V+ +G H G + +S P LAD D+ A+ + + GG V+ GK
Sbjct: 170 VSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLN---GK 225
Query: 249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTE-------LPFFASKVRLGKN 301
G + +A + A A + + V S + P +G++
Sbjct: 226 GYTSYGVATSAIRIAKAVMADAHAELVV-------SNRRDDMGMYLSYP-----AIIGRD 273
Query: 302 GVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVK 336
GV L L+ EQE L + + ++ ++ V
Sbjct: 274 GVLAETTL-DLTTDEQEKLLQSRDYIQQRFDEIVD 307
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 136 bits (343), Expect = 3e-37
Identities = 81/337 (24%), Positives = 116/337 (34%), Gaps = 60/337 (17%)
Query: 30 KVAVLGAAGGIGQPLALL------MKLNPLVSRLALYDIANTP----GVA---ADVGHIN 76
+AV GAAG I L + ++ L L + GVA D +
Sbjct: 34 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA-LKLLGSERSFQALEGVAMELEDSLYPL 92
Query: 77 TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
R G + ED D ++ PR PGM R L +IN I D A+
Sbjct: 93 LREVSIG----IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVA 148
Query: 137 P-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAE 195
N V ++ NP N+ I K A K +T LD RAK A KA V +
Sbjct: 149 SKNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDK 205
Query: 196 VNVPVVGGHAGITILPLFSQATPKANLADEDIK-------ALTKRTQDGGTEVVEAKAGK 248
V+ + G+ T +P F A E IK T Q G +++ G+
Sbjct: 206 VSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GR 264
Query: 249 GSATLSMAYAGAIFADACLKGLN----------------GVPDVVECSFVQSTVTELPFF 292
SA S A + A + + G+ + + S P
Sbjct: 265 SSA-ASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSM--------P-- 313
Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA 329
R +G E+ DF E ++K + EL A
Sbjct: 314 ---CRSKGDGDYELATDVSNDDFLWERIKKSEAELLA 347
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 55.9 bits (134), Expect = 7e-09
Identities = 42/207 (20%), Positives = 69/207 (33%), Gaps = 30/207 (14%)
Query: 25 SVPDRKVAVLGAAGGIGQPLAL---LMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
S+ K+A +G G G +L L + +ALYD+ A I S
Sbjct: 2 SLDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLD--FEAAQKNEVIGNHSGN 58
Query: 82 AG--YMGNDQLGQALEDSDVVIIPAGV------------PRKPGMTRDDLFNINAG---- 123
Y L +AL +D+VII P + G+ + + G
Sbjct: 59 GRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIR 118
Query: 124 ------IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD 177
I ++ AI Y P + V +NP++ + +VF T
Sbjct: 119 GLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKL 178
Query: 178 VVRAKTFYAGKANVNVAEVNVPVVGGH 204
+ T G ++ V V+G +
Sbjct: 179 LAEMVTERLGIEVPRREDIRVNVLGIN 205
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 50.2 bits (119), Expect = 4e-07
Identities = 28/146 (19%), Positives = 46/146 (31%), Gaps = 28/146 (19%)
Query: 30 KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDI-ANTPGVAADVGH--INTRSEVA 82
+ + G G P L LL L + +L LYD A I ++
Sbjct: 30 SIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDI 88
Query: 83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI------------------ 124
+ +A D D V+ V + D+ + G+
Sbjct: 89 EFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSI 148
Query: 125 --VKDLCSAIAKYCPNAIVNMISNPV 148
V ++ + KY P+A + SNP
Sbjct: 149 GGVLEILDYMEKYSPDAWMLNYSNPA 174
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 9e-07
Identities = 37/227 (16%), Positives = 64/227 (28%), Gaps = 55/227 (24%)
Query: 57 LALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV-------IIPAGVPRK 109
+ LY T A DV + + D G ++ D+V I G +
Sbjct: 1633 MDLYK---TSKAAQDV-----WNRADNHFK-DTYGFSI--LDIVINNPVNLTIHFGGEKG 1681
Query: 110 -------PGMTRD---DLFNINAGIVKDLCSAIAKYC---PNAIVNMISN--PVNSTVPI 154
M + D I K++ Y +++ P + +
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 155 AA-EVFKKAGTYNEKKLF---------------GVTTL-DVVRAKTFYAGKANVNVAEVN 197
AA E K G F V ++ +V FY G +
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV-VFYRGMTMQVAVPRD 1800
Query: 198 VPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
+ I I P A+ + E ++ + +R +VE
Sbjct: 1801 ELGRSNYGMIAINP----GRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Score = 44.7 bits (105), Expect = 3e-05
Identities = 48/269 (17%), Positives = 80/269 (29%), Gaps = 106/269 (39%)
Query: 116 DLFNINAGIVKDLCSAIA--------------KYCPNA--IVNMISNPVN-------STV 152
DL+ +V DL A K I+ + NP N ++
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 153 PIAA-----------EVFKKAGTYNEKKLF----GVTTL--DVVRA---------KTFYA 186
PI+ V K + +L G T +V A ++F+
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 187 GKANVNVAEVNVPVVGGHAGITILPLFS------QATPKANLADEDIKALTKRTQDGGTE 240
+V + IT+ LF +A P +L + +D
Sbjct: 295 -----SVRKA----------ITV--LFFIGVRCYEAYPNTSLPPSIL-------ED---- 326
Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLG- 299
+ +G + M + L + V+ +V T + LP +V +
Sbjct: 327 --SLENNEGVPS-PM---------LSISNLT--QEQVQ-DYVNKTNSHLP-AGKQVEISL 370
Query: 300 KNGVEE-VLGLGP---LSDFEQEGLEKLK 324
NG + V+ GP L L K K
Sbjct: 371 VNGAKNLVVS-GPPQSLYGLNLT-LRKAK 397
Score = 41.6 bits (97), Expect = 4e-04
Identities = 72/444 (16%), Positives = 133/444 (29%), Gaps = 166/444 (37%)
Query: 2 RSSVLRS---VKTLAKPAGARGYSS---ESVPDRKV---AVLGAAGGIGQPLALLMKL-- 50
++++ + +AK + +S +V + A+ G G L L
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 51 --NPLVSRL------ALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSD---- 98
+ LV L L ++ T D + T+ G + + + LE+
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTT---LDAEKVFTQ-------GLN-ILEWLENPSNTPD 227
Query: 99 ---VVIIPAGVP--------------RKPGMTRDDLFNINAGI---VKDLCSA--IAK-- 134
++ IP P + G T +L + G + L +A IA+
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 135 -----YCPNAIVNMISN------------PVNSTVPIAAEVFKKAGTYNEKK---LFGVT 174
+ ++ I+ P S + + + + NE + ++
Sbjct: 288 SWESFF--VSVRKAITVLFFIGVRCYEAYPNTS---LPPSILEDSLENNEGVPSPMLSIS 342
Query: 175 --TLDVVRAKTFYAGKAN--------VNVAEVNVP---VVGGHA----GITIL------- 210
T + V+ Y K N V ++ VN VV G G+ +
Sbjct: 343 NLTQEQVQD---YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 211 --------PLFSQATPKAN--------------LADEDIKALTKRTQDGGTEVVEAKAGK 248
P FS+ K + L A +D V A
Sbjct: 400 SGLDQSRIP-FSERKLKFSNRFLPVASPFHSHLLVP----ASDLINKDLVKNNVSFNA-- 452
Query: 249 GSATLSMA-YA---GAIFADACLKGLNGVPDVVECSFVQSTVTELP--------FFASKV 296
+ + Y G+ D + + +V+C + LP F A+ +
Sbjct: 453 --KDIQIPVYDTFDGS---DLRVLSGSISERIVDC------IIRLPVKWETTTQFKATHI 501
Query: 297 -RLGKNGVEEVLGLGPLSDFEQEG 319
G G GLG L+ ++G
Sbjct: 502 LDFGPGGA---SGLGVLTHRNKDG 522
Score = 37.0 bits (85), Expect = 0.009
Identities = 54/299 (18%), Positives = 79/299 (26%), Gaps = 146/299 (48%)
Query: 17 GARG---YSSESVPDRKVAVLGAAGGIGQP---LAL-----------LMKLN---PLVSR 56
G R Y + S+P + G P L++ + K N P +
Sbjct: 307 GVRCYEAYPNTSLPPSILE-DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 57 L--ALYDIANTP------GVAADVGHINT--RSEVAGYMGNDQ----------------- 89
+ +L N G + +N R A G DQ
Sbjct: 366 VEISLV---NGAKNLVVSGPPQSLYGLNLTLRKAKAP-SGLDQSRIPFSERKLKFSNRFL 421
Query: 90 ----------LGQALE--DSDV----VIIPA---GVPRKPGMTRD--DLFNINAGIVKDL 128
L A + + D+ V A +P T D DL ++ I + +
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD--TFDGSDLRVLSGSISERI 479
Query: 129 CSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
I I PV +T A T+ LD F
Sbjct: 480 VDCI-----------IRLPVKWETTTQFKA-------TH---------ILD------F-- 504
Query: 187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDG-GTEVVEA 244
G P GG +G+ LT R +DG G V+ A
Sbjct: 505 G-----------P--GGASGLG--------------------VLTHRNKDGTGVRVIVA 530
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 49.0 bits (116), Expect = 1e-06
Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 28/147 (19%)
Query: 30 KVAVLGAAGGI--GQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTR-SEVAG-- 83
K+A +G L+ + + L V L L DI VG + R E AG
Sbjct: 9 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVP 68
Query: 84 --YMGNDQLGQALEDSDVVIIPAGV------------PRKPGMTRDDLFNI--------N 121
+AL+ +D V V P K G+ +
Sbjct: 69 IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRT 128
Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPV 148
++ D+ + + CP+A + +NP
Sbjct: 129 IPVILDIIRDMEELCPDAWLINFTNPA 155
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 47.9 bits (113), Expect = 2e-06
Identities = 32/206 (15%), Positives = 52/206 (25%), Gaps = 43/206 (20%)
Query: 30 KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDIA--NTPGVAADVGHINTRSEVAG 83
K+ ++GA G ++ L K L S + L DI +
Sbjct: 5 KIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADL 63
Query: 84 -YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI------------------ 124
+ L + D+D VI A V + + G
Sbjct: 64 KFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTF 123
Query: 125 --------VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176
D+ I K P A +NP+ + + K G
Sbjct: 124 SNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEG----TTLVTRTVPI---KAVGFC-- 174
Query: 177 DVVRAKTFYAGKANVNVAEVNVPVVG 202
K + +V+ V G
Sbjct: 175 HGHYGVMEIVEKLGLEEEKVDWQVAG 200
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 5e-05
Identities = 53/377 (14%), Positives = 101/377 (26%), Gaps = 132/377 (35%)
Query: 50 LNPLVSRLALYDIANTP-GV--AADVGHI-NTRSEVAG-YM--------GNDQLGQALED 96
+ V D+ + P + ++ HI ++ V+G + + + +E+
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 97 SD-------------VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
P+ + R RD L+N N K S + Y +
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY--LKLRQA 143
Query: 144 ISN--PVNSTVPIAAEVFKKAGTYNEKKLFGVTTL--DVVRAKTFYAGKAN----VNVAE 195
+ P + + + G G T + DV + +N+
Sbjct: 144 LLELRPAKNVL-----IDGVLG-------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 196 VNVPVVGGHAGITIL-PLFSQATPK-ANLAD---------EDIKALTKRT---------- 234
N P + +L L Q P + +D I+A +R
Sbjct: 192 CNSP----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 235 ------QDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGL-----NGVPDVVECS--- 280
Q+ + A F +C K L V D + +
Sbjct: 248 LVLLNVQN--AKAWNA-----------------FNLSC-KILLTTRFKQVTDFLSAATTT 287
Query: 281 -----FVQSTVTE---LPFFASKVRLGKNGV-EEVLGLGPL---------SD-------F 315
T+T + + EVL P D +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 316 EQEGLEKLKPELKASIE 332
+ +KL +++S+
Sbjct: 348 KHVNCDKLTTIIESSLN 364
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 37.6 bits (88), Expect = 0.004
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
K+A+ GA+G +G+ L + P + + D +P + D G + G D
Sbjct: 9 KIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQ--TGVALTDD 66
Query: 90 LGQALEDSDVVI 101
+ + ++D +I
Sbjct: 67 IERVCAEADYLI 78
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 36.8 bits (86), Expect = 0.007
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
+VA+ GA G +G+ L V A + + + +D G + + G
Sbjct: 7 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKT-GVTVQSS 65
Query: 90 LGQALEDSDVVI 101
L +D DV I
Sbjct: 66 LDAVKDDFDVFI 77
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 36.8 bits (86), Expect = 0.007
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
++ V+GA G +G+ L ++ V A+ + V D + + G D
Sbjct: 23 RLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFL-GVRITDD 81
Query: 90 LGQALEDSDVVI 101
A +++ ++
Sbjct: 82 PESAFSNTEGIL 93
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 36.2 bits (83), Expect = 0.011
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 30 KVA-VLGAAGGIGQPLA-LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
VA ++G G IG LA +L + +Y +A A
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTR-PAWHEDNPINYVQCDISDP 60
Query: 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
D L V V T + N+ + +++ A+ CPN
Sbjct: 61 DDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPN 111
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.015
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 9/31 (29%)
Query: 125 VKDLCSAIAKYCPNAIVNMISNP---VNSTV 152
+K L +++ Y + S P + +T+
Sbjct: 22 LKKLQASLKLYADD------SAPALAIKATM 46
Score = 33.0 bits (74), Expect = 0.064
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 12/36 (33%)
Query: 47 LMKLNPLVSRLALY--DIANTPGVAADVGHINTRSE 80
L KL + L LY D A P +A I E
Sbjct: 22 LKKLQ---ASLKLYADDSA--PALA-----IKATME 47
Score = 32.2 bits (72), Expect = 0.10
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 13/30 (43%)
Query: 316 EQEGLEKLK-----------PEL--KASIE 332
E++ L+KL+ P L KA++E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
Score = 27.6 bits (60), Expect = 4.3
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 10/30 (33%)
Query: 7 RSVKTLA---KPAGARGYSSESVPDRKVAV 33
+++K L K Y+ +S P +A+
Sbjct: 20 QALKKLQASLKL-----YADDSAP--ALAI 42
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 34.8 bits (80), Expect = 0.024
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
V +LGA G I + + + + + A P N++ + + +
Sbjct: 25 NVLILGAGGQIARHVINQLADKQTIKQTLF---ARQPAKIHKPYPTNSQIIMGDVLNHAA 81
Query: 90 LGQALEDSDVVIIPAGVPRKPGMTR 114
L QA++ D+V
Sbjct: 82 LKQAMQGQDIVYANLTGEDLDIQAN 106
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 33.1 bits (76), Expect = 0.092
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 18/111 (16%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY---DIANTPGVAADVGHINTRSEVAGYM 85
++V + GA G G+ L + P ++++ +A P + VG +
Sbjct: 6 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPL---------- 55
Query: 86 GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
+ L Q D G K + + ++ DL A+ K
Sbjct: 56 -AELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDF----DLPLAVGKRA 101
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 32.7 bits (75), Expect = 0.11
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 13/105 (12%)
Query: 14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----A 69
+ G + +V V+GA G + + L+S L V
Sbjct: 7 HHHHSSGRENLYFQGMRVLVVGANGKVAR---------YLLSELKNKGHEPVAMVRNEEQ 57
Query: 70 ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTR 114
S++ + A D V+ AG G +
Sbjct: 58 GPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSGPHTGADK 102
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 33.0 bits (75), Expect = 0.11
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 29 RKVAVLGAAGGIGQPL--ALLMKLNP---LVSRLALYDIANTPGVAADVGHINTRSEVAG 83
K+ + G G IG+ + A L +P L ++ + + +
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGE 64
Query: 84 YMGNDQLGQALEDSDVVIIPAGVP 107
++++ L+ D+VI P
Sbjct: 65 MEEHEKMVSVLKQVDIVISALPFP 88
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex,
crystallographic dimer, oxidoreductase; HET: NAI UGA;
1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6
c.26.3.1 PDB: 1dli_A*
Length = 402
Score = 32.9 bits (76), Expect = 0.14
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
A +++++VII + F+ V+ + + +A +I +
Sbjct: 67 SKAAYKEAELVIIATPTNYNSR---INYFDTQH--VETVIKEVLSVNSHAT--LI---IK 116
Query: 150 STVPI--AAEVFKKAGTYN 166
ST+PI E+ +K T
Sbjct: 117 STIPIGFITEMRQKFQTDR 135
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A
{Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A*
3plr_A*
Length = 432
Score = 33.0 bits (76), Expect = 0.15
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
A ++D VII P + FN + V+ + + + PNA++ +
Sbjct: 103 KHDAYRNADYVIIATPTDYDPK---TNYFNTST--VEAVIRDVTEINPNAVM------II 151
Query: 150 -STVPI--AAEVFKKAGTYN 166
ST+P+ ++ ++ G N
Sbjct: 152 KSTIPVGFTRDIKERLGIDN 171
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 32.3 bits (73), Expect = 0.17
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 18/85 (21%)
Query: 30 KVAVLGAAGGIGQPLA--LLMKLNPLV-------SRLALYDIANTPGVAADVGHINTRSE 80
+ +LGAAG I Q L LL + + +I + V G
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGX 66
Query: 81 VAGYMGNDQLGQALEDSDVVIIPAG 105
+ QA+ +++VV + A
Sbjct: 67 LE---------QAVTNAEVVFVGAM 82
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 31.8 bits (72), Expect = 0.29
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 30 KVAVLGAAGGIGQPL--ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
K+ +LG G IG+ + A + NP + + A P ++ V G+
Sbjct: 4 KILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGD 63
Query: 88 ----DQLGQALEDSDVVIIPAG 105
+ L +A++ D+VI AG
Sbjct: 64 INDHETLVKAIKQVDIVICAAG 85
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 31.5 bits (72), Expect = 0.40
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 14/83 (16%)
Query: 19 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR 78
+ + + V ++GA G +G +A L + + +
Sbjct: 130 KPLPEYTREEFSVGIMGA-GVLGAKVA---------ESLQAWG-FPLRCWSR---SRKSW 175
Query: 79 SEVAGYMGNDQLGQALEDSDVVI 101
V Y+G ++L L + V+I
Sbjct: 176 PGVESYVGREELRAFLNQTRVLI 198
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 31.1 bits (70), Expect = 0.40
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY 84
++ VAVLG G +G +A K L +++ + + A +
Sbjct: 152 TIHGANVAVLGL-GRVGMSVA--RKFAALGAKVKVGA--RESDLLARI-----AEMGMEP 201
Query: 85 MGNDQLGQALEDSDVVI--IPAGV 106
+ Q L D DV I IPA V
Sbjct: 202 FHISKAAQELRDVDVCINTIPALV 225
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 30.7 bits (70), Expect = 0.55
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 14/83 (16%)
Query: 19 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR 78
+ + + + R + +LG G IGQ +A + GV+ R
Sbjct: 131 QSHPYQGLKGRTLLILGT-GSIGQHIA---------HTGKHFG-MKVLGVSR---SGRER 176
Query: 79 SEVAGYMGNDQLGQALEDSDVVI 101
+ L + L +DV++
Sbjct: 177 AGFDQVYQLPALNKMLAQADVIV 199
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 30.3 bits (68), Expect = 0.76
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 4/98 (4%)
Query: 29 RKVAVLGAAGGIGQPL--ALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGY 84
+V ++G G IG+ + A + +P R + + + + + A
Sbjct: 5 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASL 64
Query: 85 MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINA 122
+ +L AL+ DVVI + L + A
Sbjct: 65 DDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEA 102
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 30.3 bits (68), Expect = 0.88
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 23 SESVPDRKVAVLGAAGGIGQPLAL-LMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
E+ K+ + G G IG + +KL + + T + + +
Sbjct: 6 EENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTT-LLDEFQSLGAIIVK 64
Query: 82 AGYMGNDQLGQALEDSDVVIIPAGVP 107
+++L + ++ DVVI P
Sbjct: 65 GELDEHEKLVELMKKVDVVISALAFP 90
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 30.1 bits (68), Expect = 1.0
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 23 SESVPDRKVAVLGAAGGIGQPLAL-LMKLNPLVSRLALYDIA 63
V + VLG AG IGQ + + K NP +L + DI+
Sbjct: 30 QSVVSQSRFLVLGGAGSIGQAVTKEIFKRNP--QKLHVVDIS 69
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase,
PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB:
3ac0_A*
Length = 845
Score = 29.5 bits (66), Expect = 1.8
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 92 QALEDSDVVIIPAGVPRKPGMTRDDLFNIN-AGIVKDLCSAIAKYCPNAI-VNMISNPV 148
+ D ++ G+ + D N++ +L A+ K PN + VN PV
Sbjct: 569 ELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQSGTPV 627
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 28.8 bits (65), Expect = 2.2
Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 16/93 (17%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYD------IANTPGVAADVGHINTRSEVAG 83
K+A+ GA G G A+ + G V
Sbjct: 5 KIAIFGATGQTGLTTL----------AQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGD 54
Query: 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDD 116
+ + + + D VI+ G T
Sbjct: 55 VLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVM 87
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 28.5 bits (64), Expect = 3.5
Identities = 24/115 (20%), Positives = 35/115 (30%), Gaps = 12/115 (10%)
Query: 29 RKVAVLGAAGGIGQPLA-LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
+K V+ + +G+PLA LL V + + E G
Sbjct: 178 KKCIVINRSEIVGRPLAALLANDGATVY-SVDVNNIQKFTRGESLKLNKHHVEDLGEYSE 236
Query: 88 DQLGQALEDSDVVIIPAGVPR---KPGMTRDDLFNINAGI-------VKDLCSAI 132
D L + DSDVVI ++ IN VK+ S
Sbjct: 237 DLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNFSDDVKEKASLY 291
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 28.0 bits (63), Expect = 3.8
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 17/98 (17%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLAL---YD---IANTPGVAADVGHINTRSEVAG 83
K+ ++G+ G +G+ L + Y A ++
Sbjct: 2 KIFIVGSTGRVGKSLL----------KSLSTTDYQIYAGARKVEQVPQYNNVKAV-HFDV 50
Query: 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
+++ + L D +I +G K + D +
Sbjct: 51 DWTPEEMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVK 88
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 28.1 bits (62), Expect = 4.3
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 21 YSSESVPDRKVAVLGAAGGIGQPL--ALL 47
S P +V + GA G IGQ + A L
Sbjct: 3 VSPVPSPKGRVLIAGATGFIGQFVATASL 31
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 27.7 bits (62), Expect = 4.3
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 39/120 (32%)
Query: 30 KVAVLGAAGGIGQPL--ALL-------------MKLNPLVSRLALYDIANTPGVAADVGH 74
K+ ++GA+G +G L L K+ L + ADV
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKV--------KKADVSS 57
Query: 75 INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
+ D++ + + +D VI PG D+++ + + + K
Sbjct: 58 L------------DEVCEVCKGADAVISAFN----PGWNNPDIYDETIKVYLTIIDGVKK 101
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo
sapiens} SCOP: c.2.1.2
Length = 272
Score = 28.0 bits (63), Expect = 4.8
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62
SV V + GA GIG+ A + L S+L L+DI
Sbjct: 28 SVTGEIVLITGAGHGIGRLTAY--EFAKLKSKLVLWDI 63
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 28.0 bits (62), Expect = 5.5
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 16/77 (20%)
Query: 57 LALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLGQALEDSDVV 100
+ + D+GH R+ +AG N + +ALE +++
Sbjct: 154 CVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEII 213
Query: 101 IIPAGVPRKPGMTRDDL 117
+ A RKP +
Sbjct: 214 PLFAIKQRKPEFIKKTF 230
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 27.3 bits (60), Expect = 7.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 29 RKVAVLGAAGGIGQPLALLMK 49
+ VA+LGA G +G + +
Sbjct: 12 KTVAILGAGGKMGARITRKIH 32
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 27.3 bits (60), Expect = 7.4
Identities = 20/96 (20%), Positives = 26/96 (27%), Gaps = 22/96 (22%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSR----LALY----DIANTPGVAADVGHINTRSEV 81
K+AVLGA G G + R LA+ A+ G
Sbjct: 2 KIAVLGATGRAGSAIVAE-----ARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLT 56
Query: 82 AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDL 117
L+ D V+ VP G L
Sbjct: 57 EA---------DLDSVDAVVDALSVPWGSGRGYLHL 83
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 27.2 bits (60), Expect = 7.5
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 29 RKVAVLGAAGGIGQPL--ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG--- 83
++ ++GA G IG+ + A L L L +T ++ + + +G
Sbjct: 5 SRILLIGATGYIGRHVAKASL-DLGHPTFLLV---RESTASSNSEKAQLLESFKASGANI 60
Query: 84 ----YMGNDQLGQALEDSDVVI 101
+ L +A+++ DVVI
Sbjct: 61 VHGSIDDHASLVEAVKNVDVVI 82
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar
biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A
{Thermus thermophilus} PDB: 3oa0_A*
Length = 312
Score = 27.2 bits (60), Expect = 8.6
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-ADVGHINTRSEVAGYMG-N 87
+ A+ G AG I +K V +A D A G+ + +E +
Sbjct: 5 RFALTGLAGYIAPRHLKAIKEVGGV-LVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYL 63
Query: 88 DQLGQALEDSDVVII 102
+ L E D + I
Sbjct: 64 EDLRDRGEGVDYLSI 78
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 26.9 bits (60), Expect = 9.2
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 14/84 (16%)
Query: 19 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR 78
++ ++ +++ + G G IGQ LA L + + P
Sbjct: 128 LPMTTSTLTGQQLLIYGT-GQIGQSLAAKAS--ALGMHVIGVNTTGHPADHFHETV---- 180
Query: 79 SEVAGYMGNDQLGQALEDSDVVII 102
AL ++ ++
Sbjct: 181 -------AFTATADALATANFIVN 197
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 26.7 bits (59), Expect = 9.9
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 7/108 (6%)
Query: 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
+ V +LGA+G G+ L + L S++ L I + + N EV + D
Sbjct: 19 KSVFILGASGETGRVLLKEILEQGLFSKVTL--IGRRKLTFDEEAYKNVNQEVVDFEKLD 76
Query: 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
A + DV G R + ++ D A+
Sbjct: 77 DYASAFQGHDVGFCCLGTTRG-KAGAEGFVRVDR----DYVLKSAELA 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.372
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,108,850
Number of extensions: 330954
Number of successful extensions: 1149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 998
Number of HSP's successfully gapped: 114
Length of query: 340
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 246
Effective length of database: 4,077,219
Effective search space: 1002995874
Effective search space used: 1002995874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.3 bits)