BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019520
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GAK|A Chain A, Crystal Structure Of Acyl-Acp Thioesterase From Spirosoma
Linguale
Length = 250
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 18/198 (9%)
Query: 136 GFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLI 195
FI F++R YE A G SI L N QE+A +D G G +A+K +
Sbjct: 5 AFIQTDTFTLRGYECDAFGRXSIPALXNLXQESA-----NRNAIDYGIGIAD-LAQKGVG 58
Query: 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMN 255
W + R + + +YP + D + + T+ + K + RD+ + A G L A S W++ +
Sbjct: 59 WXLXRFCLRIHQYPRYGDTIQLXTYPTTVDKYFIHRDFRVL-ATDGTLLADARSTWLVFS 117
Query: 256 KLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGD----STADYVRRGLTPRWSD 311
R +PD +RQ P N DP+ LP D S A + + W +
Sbjct: 118 XEKRSXVPLPDFIRQLSPP--ANVDPL-----PALPLKPDFQTASFATAASKSVQVGWLN 170
Query: 312 LDVNQHVNNVKYIGWILE 329
+D NQHVNNV Y+ W+LE
Sbjct: 171 IDQNQHVNNVAYVQWLLE 188
>pdb|2OWN|A Chain A, Crystal Structure Of Oleoyl Thioesterase (Putative)
(Np_784467.1) From Lactobacillus Plantarum At 2.00 A
Resolution
pdb|2OWN|B Chain B, Crystal Structure Of Oleoyl Thioesterase (Putative)
(Np_784467.1) From Lactobacillus Plantarum At 2.00 A
Resolution
Length = 262
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 24/217 (11%)
Query: 128 GIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATP 187
G + + ++ + I YE G A++ TL++ + + + DA T
Sbjct: 1 GXATLGANASLYSEQHRITYYECDRTGRATLTTLID------IAVLASEDQSDALGLTTE 54
Query: 188 AMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRA 247
+ + WVVT+ + + R P ++VV + SA R++ IR+A G+ L
Sbjct: 55 XVQSHGVGWVVTQYAIDITRXPRQDEVVTIAVRGSAYNPYFAYREFWIRDAD-GQQLAYI 113
Query: 248 TSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLG-----DSTADYVR 302
TS+WV ++ TRR+ K+ E+ + PY E +++P+L ++T +
Sbjct: 114 TSIWVXXSQTTRRIVKILPEL---VAPY-------QSEVVKRIPRLPRPISFEATDTTIT 163
Query: 303 RGLTPRWSDLDVNQHVNNVKYIGWILEVDFLFSLYLV 339
+ R+ D+D N+HVNN Y W+ VD L + +L+
Sbjct: 164 KPYHVRFFDIDPNRHVNNAHYFDWL--VDTLPATFLL 198
>pdb|2ESS|A Chain A, Crystal Structure Of An Acyl-Acp Thioesterase
(Np_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.90 A Resolution
Length = 248
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 13/195 (6%)
Query: 143 FSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQ 202
F + + +G + L NHL A H D GFG + + N WV++R+
Sbjct: 13 FVAEPFHVDFNGRLTXGVLGNHLLNCAGFHAS-----DRGFG-IATLNEDNYTWVLSRLA 66
Query: 203 VVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLS 262
+ +D P + +V+TWV + R++ + + K G+ + A S+W +N TR+ +
Sbjct: 67 IELDEXPYQYEKFSVQTWVENVYRLFTDRNFAVID-KDGKKIGYARSVWAXINLNTRKPA 125
Query: 263 KMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVK 322
+ I Y + +++ SR T++ LT ++SD+D+N HVN+++
Sbjct: 126 DLLALHGGSIVDYICDEPCPIEKPSRI-----KVTSNQPVATLTAKYSDIDINGHVNSIR 180
Query: 323 YIGWILEVDFLFSLY 337
YI IL++ F LY
Sbjct: 181 YIEHILDL-FPIELY 194
>pdb|3IX9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
pdb|3IX9|B Chain B, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
Length = 190
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 162 MNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWV 221
+ H +ET LNH + G + + K+ + + + +D T++DV +V W
Sbjct: 51 LQHFKETTLNHAILMGRVTFDGMGRRLLPKRETLILTRNPEEKIDGVATFHDVQSVLDWY 110
Query: 222 SASGKN 227
SA KN
Sbjct: 111 SAQEKN 116
>pdb|2FUJ|A Chain A, A Putative Acyl-Coa Thioesterase From Xanthomonas
Campestris (Xc229)
Length = 137
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 302 RRGLTPRWSDLDVNQHVNNVKYIGWILE 329
R ++ RW D+D HVNN KYI ++ E
Sbjct: 12 RVPISVRWRDMDSMGHVNNAKYISYLEE 39
>pdb|2VWS|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWT|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
Length = 267
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 167 ETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGK 226
ET++ + AG P MA++ L W + V VD ++D ++ + SGK
Sbjct: 200 ETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTM-LYSDALDQRLAMFKSGK 258
Query: 227 NGMR 230
NG R
Sbjct: 259 NGPR 262
>pdb|2O5U|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (c222).
pdb|2O5U|B Chain B, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (c222).
pdb|2O5U|C Chain C, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (c222)
Length = 148
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 305 LTPRWSDLDVNQHVNNVKYIGWI 327
++ RW D D+ HVNNV Y +
Sbjct: 19 ISTRWHDNDIYGHVNNVTYYAFF 41
>pdb|2O6B|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- New Crystal Form.
pdb|2O6B|B Chain B, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- New Crystal Form.
pdb|2O6T|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|C Chain C, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|E Chain E, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|G Chain G, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|I Chain I, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|K Chain K, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6U|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- New Crystal Form.
pdb|2O6U|B Chain B, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- New Crystal Form
Length = 149
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 305 LTPRWSDLDVNQHVNNVKYIGWI 327
++ RW D D+ HVNNV Y +
Sbjct: 20 ISTRWHDNDIYGHVNNVTYYAFF 42
>pdb|2AV9|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|B Chain B, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|C Chain C, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|D Chain D, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|E Chain E, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|F Chain F, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|G Chain G, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|H Chain H, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|I Chain I, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|J Chain J, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|K Chain K, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|L Chain L, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1
Length = 147
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 305 LTPRWSDLDVNQHVNNVKYIGWI 327
++ RW D D+ HVNNV Y +
Sbjct: 18 ISTRWHDNDIYGHVNNVTYYAFF 40
>pdb|3AL0|B Chain B, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 482
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 232 DWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEV------RQEIEPYFLNSDPVVDE 285
+ +++ + GE + R T W M K+T + +E +I P L SD ++E
Sbjct: 236 ERIVKAMERGEDVERETRGWDMATKITVSMRGKEEESDYRYFPEPDIPPVVL-SDEYLEE 294
Query: 286 DSRKLPKLGDSTAD-YVRRGLTPRW 309
++LP+L D A+ ++R P +
Sbjct: 295 VKKELPELPDEKAERFMREYGLPEY 319
>pdb|2G33|C Chain C, Human Hepatitis B Virus T4 Capsid, Strain Adyw
pdb|2G33|D Chain D, Human Hepatitis B Virus T4 Capsid, Strain Adyw
pdb|2G33|B Chain B, Human Hepatitis B Virus T4 Capsid, Strain Adyw
pdb|2G33|A Chain A, Human Hepatitis B Virus T4 Capsid, Strain Adyw
pdb|2G34|C Chain C, Human Hepatitis B Virus T4 Capsid Strain Adyw Complexed
With Assembly Effector Hap1
pdb|2G34|D Chain D, Human Hepatitis B Virus T4 Capsid Strain Adyw Complexed
With Assembly Effector Hap1
pdb|2G34|B Chain B, Human Hepatitis B Virus T4 Capsid Strain Adyw Complexed
With Assembly Effector Hap1
pdb|2G34|A Chain A, Human Hepatitis B Virus T4 Capsid Strain Adyw Complexed
With Assembly Effector Hap1
Length = 150
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 211 WNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLT 258
W D++ + TWV + ++ RD ++ T L LW ++ LT
Sbjct: 62 WGDLMTLATWVGTNLEDPASRDLVVSYVNTNVGLKFRQLLWFHISALT 109
>pdb|2QIJ|C Chain C, Hepatitis B Capsid Protein With An N-Terminal Extension
Modelled Into 8.9 A Data.
pdb|2QIJ|D Chain D, Hepatitis B Capsid Protein With An N-Terminal Extension
Modelled Into 8.9 A Data.
pdb|2QIJ|B Chain B, Hepatitis B Capsid Protein With An N-Terminal Extension
Modelled Into 8.9 A Data.
pdb|2QIJ|A Chain A, Hepatitis B Capsid Protein With An N-Terminal Extension
Modelled Into 8.9 A Data
Length = 157
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 210 TWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLT 258
W D++ + TWV + ++ RD ++ T L LW ++ LT
Sbjct: 70 CWGDLMTLATWVGTNLEDPASRDLVVSYVNTNVGLKFRQLLWFHISCLT 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,292,333
Number of Sequences: 62578
Number of extensions: 360035
Number of successful extensions: 764
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 19
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)