BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019520
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SQI3|FATB_GOSHI Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1
Length = 413
Score = 527 bits (1357), Expect = e-149, Method: Compositional matrix adjust.
Identities = 262/331 (79%), Positives = 284/331 (85%), Gaps = 9/331 (2%)
Query: 1 MVATAAASAFFPVSSPSGDSVAKTKNLGSANLGGIKSKSS--SGSLQVKANAQAPSKING 58
MVATA SAFFPV+S S +K K LGS IKSK S SGSLQVKANAQAP KING
Sbjct: 1 MVATAVTSAFFPVTSSPDSSDSKNKKLGS-----IKSKPSVSSGSLQVKANAQAPPKING 55
Query: 59 TSVGLTTPAESLKNGDISTSSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPR 118
T V TTP E KN D SSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPR
Sbjct: 56 T-VASTTPVEGSKNDD-GASSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPR 113
Query: 119 RSDMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGL 178
R DM++DPFGIGKIVQDG +F QNFSIRSYEIGAD TASIETLMNHLQETA+NH +AGL
Sbjct: 114 RPDMVIDPFGIGKIVQDGLVFSQNFSIRSYEIGADQTASIETLMNHLQETAINHCRSAGL 173
Query: 179 LDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNA 238
L GFGATP M KKNLIWVVTRMQVVVDRYPTW DVV V+TWVSASGKNGMRRDWL+ N+
Sbjct: 174 LGEGFGATPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVSNS 233
Query: 239 KTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDSTA 298
+TGE LTRATS+WVMMNKLTRRLSK+P+EVR EIEP+F+NSDPV+ EDS+KL KL DSTA
Sbjct: 234 ETGEILTRATSVWVMMNKLTRRLSKIPEEVRGEIEPFFMNSDPVLAEDSQKLVKLDDSTA 293
Query: 299 DYVRRGLTPRWSDLDVNQHVNNVKYIGWILE 329
++V +GLTP+WSDLDVNQHVNNVKYIGWILE
Sbjct: 294 EHVCKGLTPKWSDLDVNQHVNNVKYIGWILE 324
>sp|Q9SJE2|FATB_ARATH Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Arabidopsis thaliana GN=FATB PE=1 SV=1
Length = 412
Score = 507 bits (1305), Expect = e-143, Method: Compositional matrix adjust.
Identities = 252/329 (76%), Positives = 280/329 (85%)
Query: 1 MVATAAASAFFPVSSPSGDSVAKTKNLGSANLGGIKSKSSSGSLQVKANAQAPSKINGTS 60
MVAT+A S+FFPV S S D K +GS NL G+ S +SG ++VK NAQAP KING
Sbjct: 1 MVATSATSSFFPVPSSSLDPNGKGNKIGSTNLAGLNSAPNSGRMKVKPNAQAPPKINGKK 60
Query: 61 VGLTTPAESLKNGDISTSSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRS 120
VGL + ++ ++S P PRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRS
Sbjct: 61 VGLPGSVDIVRTDTETSSHPAPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRS 120
Query: 121 DMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLD 180
DMLVDPFGIG+IVQDG +FRQNFSIRSYEIGAD +ASIET+MNHLQETALNHV TAGLL
Sbjct: 121 DMLVDPFGIGRIVQDGLVFRQNFSIRSYEIGADRSASIETVMNHLQETALNHVKTAGLLG 180
Query: 181 AGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKT 240
GFG+TP M KKNLIWVVTRMQVVVD+YPTW DVV V+TWVS SGKNGMRRDWL+R+ T
Sbjct: 181 DGFGSTPEMFKKNLIWVVTRMQVVVDKYPTWGDVVEVDTWVSQSGKNGMRRDWLVRDCNT 240
Query: 241 GETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDSTADY 300
GETLTRA+S+WVMMNKLTRRLSK+P+EVR EIEPYF+NSDPV+ EDSRKL K+ D TADY
Sbjct: 241 GETLTRASSVWVMMNKLTRRLSKIPEEVRGEIEPYFVNSDPVLAEDSRKLTKIDDKTADY 300
Query: 301 VRRGLTPRWSDLDVNQHVNNVKYIGWILE 329
VR GLTPRWSDLDVNQHVNNVKYIGWILE
Sbjct: 301 VRSGLTPRWSDLDVNQHVNNVKYIGWILE 329
>sp|Q39513|FATB_CUPHO Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1
Length = 415
Score = 483 bits (1244), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/332 (70%), Positives = 278/332 (83%), Gaps = 7/332 (2%)
Query: 1 MVATAAASAFFPVSSPSGDSVAKTKNLGS--ANLGGIKSKSS-SGSLQVKANAQAPSKIN 57
MVATAA+SAFFP+ PS D+ ++ LG+ ++L +K KS+ +G LQVKANA AP KIN
Sbjct: 1 MVATAASSAFFPL--PSADTSSRPGKLGNKPSSLSPLKPKSTPNGGLQVKANASAPPKIN 58
Query: 58 GTSVGLTTPAESLKNGDISTSSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKP 117
G+ VGL + LK + + S+PPPRTFINQLPDWSMLLAAITT+FLAAEKQWMMLDWKP
Sbjct: 59 GSPVGLKS--GGLKTQEDAHSAPPPRTFINQLPDWSMLLAAITTVFLAAEKQWMMLDWKP 116
Query: 118 RRSDMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAG 177
+R DMLVDPFG+G IVQDG +FRQNFSIRSYEIGAD TASIET+MNHLQETALNHV AG
Sbjct: 117 KRPDMLVDPFGLGSIVQDGLVFRQNFSIRSYEIGADRTASIETVMNHLQETALNHVKIAG 176
Query: 178 LLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRN 237
L + GFG TP M K++LIWVV +MQV+V+RYPTW D V V TWV+ SGKNGMRRDWLI +
Sbjct: 177 LSNDGFGRTPEMYKRDLIWVVAKMQVMVNRYPTWGDTVEVNTWVAKSGKNGMRRDWLISD 236
Query: 238 AKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDST 297
TGE LTRA+S+WVMMN+ TRRLSK+PDEVR EIEP+F++S PV+++D RKLPKL + T
Sbjct: 237 CNTGEILTRASSVWVMMNQKTRRLSKIPDEVRNEIEPHFVDSPPVIEDDDRKLPKLDEKT 296
Query: 298 ADYVRRGLTPRWSDLDVNQHVNNVKYIGWILE 329
AD +R+GLTPRW+DLDVNQHVNNVKYIGWILE
Sbjct: 297 ADSIRKGLTPRWNDLDVNQHVNNVKYIGWILE 328
>sp|Q39473|FATB_CINCA Myristoyl-acyl carrier protein thioesterase, chloroplastic
OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1
Length = 382
Score = 313 bits (801), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 168/312 (53%), Positives = 208/312 (66%), Gaps = 32/312 (10%)
Query: 34 GIKSKSSSGSLQVKA-NAQAPSK-INGTSVGLTTPAESLKNGDISTSSPPPRTFINQLPD 91
G+K +SS LQ++A NAQ K INGT T ESLK +LPD
Sbjct: 24 GMKPRSSD--LQLRAGNAQTSLKMINGTKFSYT---ESLK----------------KLPD 62
Query: 92 WSMLLAAITTIFLAAEKQWMMLDWKPRRS--DMLVDPFGIGKIVQDGFIFRQNFSIRSYE 149
WSML A ITTIF AAEKQW L+WKP+ + +L D FG G +FR+ F+IRSYE
Sbjct: 63 WSMLFAVITTIFSAAEKQWTNLEWKPKPNPPQLLDDHFG-----PHGLVFRRTFAIRSYE 117
Query: 150 IGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYP 209
+G D + SI +MNHLQE ALNH + G+L GFG T M+K++LIWVV R V V+RYP
Sbjct: 118 VGPDRSTSIVAVMNHLQEAALNHAKSVGILGDGFGTTLEMSKRDLIWVVKRTHVAVERYP 177
Query: 210 TWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVR 269
W D V VE WV ASG NG R D+L+R+ KTGE LTR TSL VMMN TRRLSK+P+EVR
Sbjct: 178 AWGDTVEVECWVGASGNNGRRHDFLVRDCKTGEILTRCTSLSVMMNTRTRRLSKIPEEVR 237
Query: 270 QEIEPYFLNSDPVVDEDSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILE 329
EI P F+++ V DE+ +K KL DSTADY++ GLTPRW+DLD+NQHVNN+KY+ WILE
Sbjct: 238 GEIGPAFIDNVAVKDEEIKKPQKLNDSTADYIQGGLTPRWNDLDINQHVNNIKYVDWILE 297
Query: 330 V--DFLFSLYLV 339
D +F + +
Sbjct: 298 TVPDSIFESHHI 309
>sp|Q41635|FATB_UMBCA Lauroyl-acyl carrier protein thioesterase, chloroplastic
OS=Umbellularia californica GN=FATB1 PE=1 SV=1
Length = 382
Score = 310 bits (794), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 163/313 (52%), Positives = 208/313 (66%), Gaps = 34/313 (10%)
Query: 34 GIKSKSSSGSLQVKANAQAPSK---INGTSVGLTTPAESLKNGDISTSSPPPRTFINQLP 90
G+K +SS LQ++A AP+ INGT T ESLK +LP
Sbjct: 24 GMKPRSSD--LQLRA-GNAPTSLKMINGTKFSYT---ESLK----------------RLP 61
Query: 91 DWSMLLAAITTIFLAAEKQWMMLDWKPRRS--DMLVDPFGIGKIVQDGFIFRQNFSIRSY 148
DWSML A ITTIF AAEKQW L+WKP+ +L D FG+ G +FR+ F+IRSY
Sbjct: 62 DWSMLFAVITTIFSAAEKQWTNLEWKPKPKLPQLLDDHFGL-----HGLVFRRTFAIRSY 116
Query: 149 EIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRY 208
E+G D + SI +MNH+QE LNH + G+L GFG T M+K++L+WVV R V V+RY
Sbjct: 117 EVGPDRSTSILAVMNHMQEATLNHAKSVGILGDGFGTTLEMSKRDLMWVVRRTHVAVERY 176
Query: 209 PTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEV 268
PTW D V VE W+ ASG NGMRRD+L+R+ KTGE LTR TSL V+MN TRRLS +PDEV
Sbjct: 177 PTWGDTVEVECWIGASGNNGMRRDFLVRDCKTGEILTRCTSLSVLMNTRTRRLSTIPDEV 236
Query: 269 RQEIEPYFLNSDPVVDEDSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWIL 328
R EI P F+++ V D++ +KL KL DSTADY++ GLTPRW+DLDVNQHVNN+KY+ W+
Sbjct: 237 RGEIGPAFIDNVAVKDDEIKKLQKLNDSTADYIQGGLTPRWNDLDVNQHVNNLKYVAWVF 296
Query: 329 EV--DFLFSLYLV 339
E D +F + +
Sbjct: 297 ETVPDSIFESHHI 309
>sp|Q9SV64|FATA2_ARATH Oleoyl-acyl carrier protein thioesterase 2, chloroplastic
OS=Arabidopsis thaliana GN=FATA2 PE=2 SV=1
Length = 367
Score = 211 bits (537), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 140/211 (66%), Gaps = 8/211 (3%)
Query: 125 DPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFG 184
D G++++DGF +++ F +RSYE+G + TA+IET+ N LQE A NHV G GF
Sbjct: 69 DRLRFGRLMEDGFSYKEKFIVRSYEVGINKTATIETIANLLQEVACNHVQNVGFSTDGFA 128
Query: 185 ATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETL 244
T M K +LIWV RM + + +YP W+DVV +ETW + G+ G RRDW++++ TGE +
Sbjct: 129 TTLTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDCATGEVI 188
Query: 245 TRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVV---DEDS---RKLPKLGDSTA 298
RATS WVMMN+ TRRL ++ DEVR E F +P + +E++ +K+PKL D A
Sbjct: 189 GRATSKWVMMNQDTRRLQRVTDEVRDEY-LVFCPPEPRLAFPEENNSSLKKIPKLEDP-A 246
Query: 299 DYVRRGLTPRWSDLDVNQHVNNVKYIGWILE 329
Y GL PR +DLD+NQHVNNV YIGW+LE
Sbjct: 247 QYSMLGLKPRRADLDMNQHVNNVTYIGWVLE 277
>sp|Q42561|FATA1_ARATH Oleoyl-acyl carrier protein thioesterase 1, chloroplastic
OS=Arabidopsis thaliana GN=FATA PE=1 SV=1
Length = 362
Score = 207 bits (527), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 138/213 (64%), Gaps = 8/213 (3%)
Query: 123 LVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAG 182
L D +G + +DG +++ F +RSYE+G++ TA++ET+ N LQE NH + G G
Sbjct: 68 LADQLRLGSLTEDGLSYKEKFVVRSYEVGSNKTATVETIANLLQEVGCNHAQSVGFSTDG 127
Query: 183 FGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGE 242
F T M K +LIWV RM + + +YP W DVV +ETW + G+ G RRDW+++++ TGE
Sbjct: 128 FATTTTMRKLHLIWVTARMHIEIYKYPAWGDVVEIETWCQSEGRIGTRRDWILKDSVTGE 187
Query: 243 TLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVV---DEDSR---KLPKLGDS 296
RATS WVMMN+ TRRL K+ D+VR E F +P + +E++R K+PKL D
Sbjct: 188 VTGRATSKWVMMNQDTRRLQKVSDDVRDEY-LVFCPQEPRLAFPEENNRSLKKIPKLEDP 246
Query: 297 TADYVRRGLTPRWSDLDVNQHVNNVKYIGWILE 329
A Y GL PR +DLD+NQHVNNV YIGW+LE
Sbjct: 247 -AQYSMIGLKPRRADLDMNQHVNNVTYIGWVLE 278
>sp|Q42712|FATA_CORSA Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment)
OS=Coriandrum sativum GN=FATA PE=2 SV=1
Length = 369
Score = 205 bits (522), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 138/216 (63%), Gaps = 6/216 (2%)
Query: 119 RSDMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGL 178
RS L + +G + +DG +++ F +R YE+G + TA++ET+ N LQE NH + G
Sbjct: 62 RSSSLAEKLRLGSLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGGNHAQSVGF 121
Query: 179 LDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNA 238
GF TP M K +LIWV RM + + RYP W+DVV +ETW + G+ G RRDW+I++
Sbjct: 122 STDGFATTPTMRKLHLIWVTARMHIEIYRYPAWSDVVEIETWCQSEGRIGTRRDWIIKDF 181
Query: 239 KTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVV---DEDSRKLPKLG- 294
T E + RATS WVMMN+ TRRL K+ D+VR E F P + +E+++ L K+
Sbjct: 182 ATDEVIGRATSKWVMMNQDTRRLQKVSDDVRDEY-LVFCPKTPRLSFPEENNKSLKKISK 240
Query: 295 -DSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILE 329
+ A + R GL+PR +DLD+NQHVNNV YIGW+LE
Sbjct: 241 LEDPAQHSRLGLSPRRADLDMNQHVNNVAYIGWVLE 276
>sp|Q6FKA5|MED14_CANGA Mediator of RNA polymerase II transcription subunit 14 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=RGR1 PE=3 SV=1
Length = 1037
Score = 36.2 bits (82), Expect = 0.36, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 41 SGSLQVKANAQAPSKINGTSVGLTTPAESLK--NGDISTSSPP--PRTFINQLPDWSMLL 96
+G +++ QAP ++GL +P +++ N + ST+SPP P INQ+P SM++
Sbjct: 18 NGKNEMEVVEQAPIPKTNANIGLKSPVNTVEDVNQEDSTNSPPPIPHVEINQMP-LSMII 76
Query: 97 AAITTIFLAAEKQWM 111
+T + Q+M
Sbjct: 77 RNLTVYTVKEISQYM 91
>sp|Q9JI19|FIBP_MOUSE Acidic fibroblast growth factor intracellular-binding protein
OS=Mus musculus GN=Fibp PE=2 SV=1
Length = 357
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 165 LQETALNHVMTAGLLDAGFGATPAMAKKNLIWVV--TRMQVVVDRYPTWNDVVNVETWVS 222
LQ ++H T +L+ A P + + LI+ + +R ++++RY T+++ E
Sbjct: 52 LQSDTMDHYRTFHMLERLLHAPPKLLHQ-LIFQIPPSRQTLLIERYYTFDEAFVREVLGK 110
Query: 223 ASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPV 282
K G ++D + KTG TL + ++ + + +M + I+ +FL SD +
Sbjct: 111 KLSK-GTKKDLDDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRL 169
>sp|Q03573|YLF3_CAEEL Uncharacterized protein C40H1.3 OS=Caenorhabditis elegans
GN=C40H1.3 PE=4 SV=1
Length = 504
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 141 QNFSIRSYEIGADGTASIETLMNHLQETALNH 172
Q + RS ++GAD AS+ TL N+L+ +L H
Sbjct: 62 QGYDERSSDVGADPLASVRTLRNNLRVMSLEH 93
>sp|Q54801|DYR_STRPN Dihydrofolate reductase OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=dhfR PE=1 SV=2
Length = 168
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 162 MNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWV 221
+ H +ET LNH + G + + K+ + + + +D T+ DV +V W
Sbjct: 31 LQHFKETTLNHAILMGRVTFDGMGRRLLPKRETLILTRNPEEKIDGVATFQDVQSVLDWY 90
Query: 222 SASGKN 227
A KN
Sbjct: 91 QAQEKN 96
>sp|Q95218|DMBT1_RABIT Deleted in malignant brain tumors 1 protein OS=Oryctolagus cuniculus
GN=Dmbt1 PE=1 SV=2
Length = 1594
Score = 31.6 bits (70), Expect = 9.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 131 KIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGA 185
+ V DG I R+ F Y + ++ + ++ LMNH+Q + V A L GF A
Sbjct: 1282 RFVSDGSITRRGFQAEFYSLPSNDSTNLLCLMNHMQAS----VSRAYLQSLGFSA 1332
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,568,552
Number of Sequences: 539616
Number of extensions: 5075646
Number of successful extensions: 14199
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 14142
Number of HSP's gapped (non-prelim): 56
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)