Query 019520
Match_columns 340
No_of_seqs 291 out of 1809
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:25:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02370 acyl-ACP thioesterase 100.0 3E-110 6E-115 829.6 33.3 336 1-336 1-337 (419)
2 PF12590 Acyl-thio_N: Acyl-ATP 100.0 5E-65 1.1E-69 420.5 9.2 124 1-125 1-129 (129)
3 PF01643 Acyl-ACP_TE: Acyl-ACP 100.0 5.9E-46 1.3E-50 350.5 15.1 199 136-336 1-201 (261)
4 COG3884 FatA Acyl-ACP thioeste 100.0 8.4E-31 1.8E-35 239.2 10.2 187 137-337 2-189 (250)
5 PRK10800 acyl-CoA thioesterase 100.0 6.9E-27 1.5E-31 197.3 18.8 128 138-272 2-129 (130)
6 TIGR02799 thio_ybgC tol-pal sy 99.9 3.7E-25 8E-30 184.5 16.6 124 139-270 1-125 (126)
7 COG0824 FcbC Predicted thioest 99.9 2.5E-24 5.4E-29 185.2 18.1 132 136-275 3-134 (137)
8 TIGR00051 acyl-CoA thioester h 99.9 4.7E-24 1E-28 174.6 16.1 117 142-265 1-117 (117)
9 PF13279 4HBT_2: Thioesterase- 99.9 6.1E-21 1.3E-25 158.1 17.1 119 145-272 1-121 (121)
10 PRK07531 bifunctional 3-hydrox 99.9 4.5E-21 9.7E-26 196.2 17.7 136 136-279 343-478 (495)
11 cd00586 4HBT 4-hydroxybenzoyl- 99.8 4.5E-17 9.7E-22 129.1 15.4 110 139-255 1-110 (110)
12 cd03442 BFIT_BACH Brown fat-in 99.4 4E-11 8.8E-16 98.5 16.0 113 137-265 6-123 (123)
13 cd03440 hot_dog The hotdog fol 99.0 1.1E-08 2.4E-13 75.6 13.6 97 141-251 3-99 (100)
14 PF03061 4HBT: Thioesterase su 98.9 4.1E-08 8.9E-13 74.4 12.2 79 153-245 1-79 (79)
15 cd03443 PaaI_thioesterase PaaI 98.7 7.9E-07 1.7E-11 71.9 14.5 102 136-252 11-112 (113)
16 PF01643 Acyl-ACP_TE: Acyl-ACP 98.7 1.2E-07 2.6E-12 89.8 10.4 96 136-251 163-259 (261)
17 PLN02370 acyl-ACP thioesterase 98.4 1.1E-06 2.5E-11 88.5 10.5 94 140-253 303-402 (419)
18 PRK10694 acyl-CoA esterase; Pr 98.4 1.4E-05 3E-10 68.6 15.2 111 140-266 13-131 (133)
19 COG1607 Acyl-CoA hydrolase [Li 98.0 0.00046 9.9E-09 61.1 15.3 113 141-268 16-132 (157)
20 TIGR00369 unchar_dom_1 unchara 97.7 0.0015 3.3E-08 53.9 14.2 98 140-252 19-116 (117)
21 COG3884 FatA Acyl-ACP thioeste 97.7 0.00017 3.6E-09 67.2 8.4 88 138-251 152-239 (250)
22 TIGR02286 PaaD phenylacetic ac 97.4 0.0061 1.3E-07 50.1 13.9 96 141-253 18-113 (114)
23 PLN02647 acyl-CoA thioesterase 97.3 0.0042 9E-08 63.4 13.6 117 143-266 98-221 (437)
24 PRK10293 acyl-CoA esterase; Pr 97.0 0.038 8.2E-07 47.6 14.3 100 140-254 37-136 (136)
25 cd00586 4HBT 4-hydroxybenzoyl- 96.9 0.00027 5.9E-09 55.3 0.2 31 303-333 3-33 (110)
26 PRK10254 thioesterase; Provisi 96.8 0.094 2E-06 45.3 15.4 100 140-254 37-136 (137)
27 PRK11688 hypothetical protein; 96.6 0.076 1.7E-06 46.3 13.9 110 141-253 41-153 (154)
28 COG5496 Predicted thioesterase 96.6 0.13 2.8E-06 43.9 14.1 110 134-258 2-118 (130)
29 KOG3328 HGG motif-containing t 96.2 0.068 1.5E-06 46.8 11.0 100 140-253 40-139 (148)
30 COG2050 PaaI HGG motif-contain 96.2 0.23 5.1E-06 42.4 14.1 104 139-256 36-139 (141)
31 cd03449 R_hydratase (R)-hydrat 96.1 0.085 1.9E-06 43.3 10.7 57 194-251 68-126 (128)
32 PRK07531 bifunctional 3-hydrox 95.7 0.0043 9.3E-08 64.1 1.4 30 302-331 347-376 (495)
33 PLN02322 acyl-CoA thioesterase 95.6 0.77 1.7E-05 40.5 14.9 102 140-255 29-135 (154)
34 COG4109 Predicted transcriptio 94.7 0.23 5E-06 49.4 9.8 100 135-251 329-428 (432)
35 cd01288 FabZ FabZ is a 17kD be 94.6 1.2 2.7E-05 36.6 12.8 83 159-253 48-130 (131)
36 PLN02647 acyl-CoA thioesterase 94.5 1.3 2.9E-05 45.4 15.2 115 138-266 290-414 (437)
37 cd03455 SAV4209 SAV4209 is a S 94.5 0.32 6.9E-06 40.3 9.0 55 196-251 67-122 (123)
38 KOG4366 Predicted thioesterase 94.4 0.02 4.3E-07 51.9 1.7 102 145-255 57-161 (213)
39 cd00556 Thioesterase_II Thioes 94.4 0.26 5.7E-06 38.5 8.0 58 194-252 41-98 (99)
40 PF14539 DUF4442: Domain of un 94.2 0.86 1.9E-05 38.7 11.2 99 138-252 30-131 (132)
41 PRK13691 (3R)-hydroxyacyl-ACP 94.2 0.62 1.3E-05 41.4 10.6 61 197-258 85-149 (166)
42 cd03441 R_hydratase_like (R)-h 93.4 0.88 1.9E-05 37.0 9.6 56 194-250 66-125 (127)
43 PRK00006 fabZ (3R)-hydroxymyri 93.2 4.8 0.0001 34.3 16.3 59 195-255 87-146 (147)
44 cd03447 FAS_MaoC FAS_MaoC, the 93.1 1.2 2.5E-05 37.6 10.1 54 197-251 69-123 (126)
45 PRK13692 (3R)-hydroxyacyl-ACP 93.0 1.3 2.8E-05 39.0 10.6 60 199-259 87-150 (159)
46 cd03453 SAV4209_like SAV4209_l 92.8 1.2 2.6E-05 37.1 9.6 52 198-250 70-125 (127)
47 cd03454 YdeM YdeM is a Bacillu 92.8 0.68 1.5E-05 39.0 8.2 51 201-252 81-138 (140)
48 cd00493 FabA_FabZ FabA/Z, beta 92.6 4.7 0.0001 32.9 13.0 85 154-248 42-126 (131)
49 cd03446 MaoC_like MoaC_like 92.4 0.9 2E-05 38.1 8.5 51 201-252 83-139 (140)
50 cd03451 FkbR2 FkbR2 is a Strep 91.4 1.2 2.7E-05 37.5 8.3 55 198-253 81-142 (146)
51 PRK04424 fatty acid biosynthes 91.4 2.4 5.3E-05 38.2 10.6 59 193-253 123-181 (185)
52 TIGR02447 yiiD_Cterm thioester 91.0 9.2 0.0002 32.7 13.9 99 141-254 26-137 (138)
53 TIGR01750 fabZ beta-hydroxyacy 90.4 9.7 0.00021 32.0 13.8 86 156-252 53-139 (140)
54 PF13452 MaoC_dehydrat_N: N-te 90.0 1.5 3.3E-05 36.4 7.5 52 194-246 73-131 (132)
55 PF13622 4HBT_3: Thioesterase- 89.3 3.5 7.6E-05 38.1 10.1 57 196-255 34-90 (255)
56 cd03445 Thioesterase_II_repeat 89.0 4.2 9.2E-05 32.5 9.0 54 196-251 39-92 (94)
57 PRK08190 bifunctional enoyl-Co 88.4 3.9 8.4E-05 42.2 10.5 66 195-261 82-149 (466)
58 cd03452 MaoC_C MaoC_C The C-t 88.3 2.9 6.2E-05 35.7 8.1 51 201-252 81-137 (142)
59 cd03440 hot_dog The hotdog fol 87.3 0.24 5.3E-06 35.5 0.7 29 304-332 4-32 (100)
60 PLN02864 enoyl-CoA hydratase 86.6 3.8 8.3E-05 40.0 8.8 60 196-255 94-157 (310)
61 cd03442 BFIT_BACH Brown fat-in 83.5 0.8 1.7E-05 36.9 2.2 30 302-331 9-38 (123)
62 TIGR00189 tesB acyl-CoA thioes 77.2 11 0.00024 35.3 8.0 55 196-252 44-98 (271)
63 PF07977 FabA: FabA-like domai 74.7 50 0.0011 27.7 12.0 102 139-248 27-138 (138)
64 PRK13188 bifunctional UDP-3-O- 71.8 47 0.001 34.5 11.4 58 196-255 402-461 (464)
65 PF03756 AfsA: A-factor biosyn 70.1 63 0.0014 26.9 12.7 88 153-253 40-132 (132)
66 cd03448 HDE_HSD HDE_HSD The R 69.0 29 0.00063 29.0 7.8 48 196-248 70-117 (122)
67 cd01289 FabA_like Domain of un 68.7 72 0.0016 27.0 12.2 88 154-251 45-134 (138)
68 cd03444 Thioesterase_II_repeat 68.0 35 0.00076 27.6 7.8 56 196-252 48-103 (104)
69 COG2030 MaoC Acyl dehydratase 65.6 39 0.00084 29.5 8.1 59 195-254 93-155 (159)
70 PRK10526 acyl-CoA thioesterase 64.6 34 0.00073 32.9 8.2 55 196-252 55-109 (286)
71 COG0764 FabA 3-hydroxymyristoy 61.9 1.1E+02 0.0023 26.8 10.1 62 194-256 85-146 (147)
72 PF01575 MaoC_dehydratas: MaoC 60.2 19 0.00042 29.6 5.0 34 194-227 74-107 (122)
73 cd03450 NodN NodN (nodulation 58.6 1E+02 0.0022 26.7 9.4 29 196-224 85-113 (149)
74 COG1946 TesB Acyl-CoA thioeste 54.2 2.2E+02 0.0048 27.8 12.4 133 100-254 148-283 (289)
75 KOG4366 Predicted thioesterase 51.7 3.8 8.3E-05 37.4 -0.6 17 309-325 59-76 (213)
76 PF13622 4HBT_3: Thioesterase- 51.4 1.3E+02 0.0028 27.6 9.5 54 198-252 200-254 (255)
77 cd01287 FabA FabA, beta-hydrox 51.0 1.7E+02 0.0036 25.5 12.7 92 154-254 50-147 (150)
78 TIGR00189 tesB acyl-CoA thioes 48.3 1.1E+02 0.0023 28.6 8.6 55 197-252 215-269 (271)
79 PLN02864 enoyl-CoA hydratase 48.3 86 0.0019 30.6 8.1 51 197-252 254-304 (310)
80 TIGR02278 PaaN-DH phenylacetic 47.6 59 0.0013 35.2 7.4 50 201-251 604-659 (663)
81 PRK11563 bifunctional aldehyde 47.4 63 0.0014 35.0 7.6 49 202-251 617-671 (675)
82 PRK13693 (3R)-hydroxyacyl-ACP 46.5 1.9E+02 0.004 24.7 9.4 52 199-251 81-139 (142)
83 PF02551 Acyl_CoA_thio: Acyl-C 41.5 1.8E+02 0.004 25.1 8.0 53 198-251 77-130 (131)
84 PLN02868 acyl-CoA thioesterase 38.8 1.1E+02 0.0025 30.7 7.6 55 196-252 181-235 (413)
85 PF11456 DUF3019: Protein of u 33.1 1.2E+02 0.0026 24.8 5.5 35 231-265 65-99 (102)
86 PRK10526 acyl-CoA thioesterase 30.2 2.4E+02 0.0051 27.0 7.9 60 194-254 224-283 (286)
87 PF14765 PS-DH: Polyketide syn 27.9 3.7E+02 0.0081 24.7 8.7 56 194-250 227-284 (295)
88 COG0231 Efp Translation elonga 23.2 4.7E+02 0.01 22.3 8.0 88 190-279 16-110 (131)
No 1
>PLN02370 acyl-ACP thioesterase
Probab=100.00 E-value=2.8e-110 Score=829.62 Aligned_cols=336 Identities=81% Similarity=1.254 Sum_probs=316.9
Q ss_pred ChhccccccccccCCCCCCCcccccCCCCCCcCCccccCC-CCcceeeccccCCCccCCcceeeccCccccCCCCCCCCC
Q 019520 1 MVATAAASAFFPVSSPSGDSVAKTKNLGSANLGGIKSKSS-SGSLQVKANAQAPSKINGTSVGLTTPAESLKNGDISTSS 79 (340)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (340)
|||++|+|||||||+|++++++.++|.++++++|||+||+ +|||||||||||+|||||++|+|+++++++|++|++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (419)
T PLN02370 1 MVATAATSSFFPVPSPSGDAKAKKFGSGSASLGGIKSKSASSGALQVKANAQAPPKINGSPVGLTGSVEIVKTDEDVVSS 80 (419)
T ss_pred CchhhhhcccccCCCCCCCcccccCCCCcccccccccCCCCCCceeeeccccCCCcccCceeecccccccccccccCCCC
Confidence 9999999999999999999977788889999999999999 889999999999999999999999999999999997769
Q ss_pred CCcccccccCCChHHHHHHHHHHHHHhhhhhhhccCCCCCCCccccCcccCccccCCeeEEEEEEeecCCCCCCCCcCHH
Q 019520 80 PPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRSDMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIE 159 (340)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vf~~~~~VR~~D~Da~GhV~~~ 159 (340)
|||||||||||||||||||||||||||||||||+|||++|||||+||||+|+|+||+++|+++|+||+||||++|++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~f~Ir~yEvD~~g~lsl~ 160 (419)
T PLN02370 81 PAPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRSDMLIDPFGIGRIVQDGLVFRQNFSIRSYEIGADRTASIE 160 (419)
T ss_pred CCCcchhhcCCcHHHHHHHHHHHHHhhhhhhhhhcccCCCCcccccccccCceeccCcEEEEEEEEeeEEECCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECC
Q 019520 160 TLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAK 239 (340)
Q Consensus 160 ~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~ 239 (340)
.+++|||+++.+|++.+|++++||+...+|.+.|++|||++++|+|+|+|+|||+|+|+||+.+++++++.|+|+|+|.+
T Consensus 161 ~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~~I~~~R~P~~gD~V~V~Twv~~~~k~~~~Rdf~I~D~~ 240 (419)
T PLN02370 161 TLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRMQVLVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVRDCK 240 (419)
T ss_pred HHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEEEEEEEeCcCCCCCCEEEEEEEEeeCCCCEEEEEEEEEECC
Confidence 99999999999999999998888987778999999999999999999999999999999999999999999999999965
Q ss_pred CCcEEEEEEEEEEEEECCCCcccCCCHHHHHhhccccCCCCCCCcccCCCCCCCCCCcccceeccCCCCCCCCCccCCcc
Q 019520 240 TGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVN 319 (340)
Q Consensus 240 ~Gevia~A~S~wVlvD~~tRRpvrIP~evre~i~~y~~~~~~~i~~~~rkl~kl~~~~~~~~~~~~tVr~SDLD~NgHVN 319 (340)
+|+++++|.|+||+||++||||+|||+++++.+.+|..+..+.+++..+|++++++.++++.+..++|||+|||.|||||
T Consensus 241 ~Ge~la~A~SvWV~mD~~TRRpvRIP~Evr~~i~~y~~~~~~~i~~~~~kl~~l~~~~~~~~~~~~~VRysDLD~NgHVN 320 (419)
T PLN02370 241 TGETLTRASSVWVMMNKLTRRLSKIPEEVRGEIEPYFLNSDPVVNEDSRKLPKLDDKTADYIRKGLTPRWSDLDVNQHVN 320 (419)
T ss_pred CCeEEEEEEEEEEEEECCCCcccCCCHHHHHhhhhcccccccccccccccCCccccccccceeeeeeecHHHCcccCccc
Confidence 79999999999999999999999999999999999987766666656778888776444455667999999999999999
Q ss_pred hHHHHHHHHHhcccccc
Q 019520 320 NVKYIGWILEVDFLFSL 336 (340)
Q Consensus 320 Nv~Yi~wild~lP~e~~ 336 (340)
|++|++|++|++|.+++
T Consensus 321 NvkYi~Wild~lP~e~l 337 (419)
T PLN02370 321 NVKYIGWILESAPPPIM 337 (419)
T ss_pred cHHHHHHHHhhCchhhh
Confidence 99999999999998864
No 2
>PF12590 Acyl-thio_N: Acyl-ATP thioesterase; InterPro: IPR021113 This entry represents the N-terminal domain of acyl-ATP thioesterases from bacteria and eukaryotes. These proteins are typically between 120 and 131 amino acids in length. The plant acyl-acyl carrier protein (ACP) thioesterases (TEs) play an essential role in chain termination during de novo fatty acid synthesis [].; GO: 0016790 thiolester hydrolase activity
Probab=100.00 E-value=5e-65 Score=420.49 Aligned_cols=124 Identities=73% Similarity=1.036 Sum_probs=116.0
Q ss_pred ChhccccccccccCCCCCCCcc--cccCC--CCCCcCCccccCC-CCcceeeccccCCCccCCcceeeccCccccCCCCC
Q 019520 1 MVATAAASAFFPVSSPSGDSVA--KTKNL--GSANLGGIKSKSS-SGSLQVKANAQAPSKINGTSVGLTTPAESLKNGDI 75 (340)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (340)
|||++|+|||||||++++++++ +++|+ +++|+||||+|++ +||||||||+||+|||||++|+|+++++.++++++
T Consensus 1 MvAtaAaSaFFpvps~~~~~~~~s~~~G~~p~sl~~rgik~k~~~sg~~qvKanaqA~pKiNG~~v~l~~~~~~~~~~~~ 80 (129)
T PF12590_consen 1 MVATAAASAFFPVPSPSPSPKASSGKLGNGPDSLDVRGIKAKSASSGGLQVKANAQAPPKINGSKVGLKTGSEGTKEDDS 80 (129)
T ss_pred ChhhhhhhhccCCCCCCCCCccccccCCCCCCcccccccccCcCCCCCeeeecCCcCCCcccCccccccccccccccccc
Confidence 9999999999999999999887 78888 6777789999999 88999999999999999999999997777666665
Q ss_pred CCCCCCcccccccCCChHHHHHHHHHHHHHhhhhhhhccCCCCCCCcccc
Q 019520 76 STSSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRSDMLVD 125 (340)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (340)
++||+|||||||||||||||||||||||||||||||||||+||||||+|
T Consensus 81 -~~s~~pRTFiNQLPDWSMLLAAITTIFlAAEKQW~mLDwKpkRPDML~D 129 (129)
T PF12590_consen 81 -SSSPAPRTFINQLPDWSMLLAAITTIFLAAEKQWTMLDWKPKRPDMLVD 129 (129)
T ss_pred -CCCCCchhHhhhCccHHHHHHHHHHHHHHhhhhhhhhcccCCCcccccC
Confidence 7899999999999999999999999999999999999999999999998
No 3
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=100.00 E-value=5.9e-46 Score=350.46 Aligned_cols=199 Identities=37% Similarity=0.687 Sum_probs=140.5
Q ss_pred CeeEEEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEE
Q 019520 136 GFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVV 215 (340)
Q Consensus 136 g~vf~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V 215 (340)
|.+|+++++|+++|||.+|++++..+++|||+++..|+..+|+..++||.+++|.+.|++|||+|+++++.|+|++||+|
T Consensus 1 g~~y~~~~~v~~~e~d~~~~l~l~~l~~~~qe~a~~h~~~lG~~~~~~~~~~~l~~~~~~Wvl~r~~i~i~r~P~~~e~i 80 (261)
T PF01643_consen 1 GLVYEKEFTVRYYECDPNGRLKLSALLNYFQEAATEHAESLGFGMDYFGSTPELKKQGLAWVLSRYQIEIHRYPRWGEKI 80 (261)
T ss_dssp ---EEEEEE--GGGB-TTSBB-HHHHHHHHHHHHHHHHHHTT-SHHH------HHCTTEEEEEEEEEEEESS--BTT-EE
T ss_pred CceEEEEEEEcceeeCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcccchhhhhHhhcCcEEEEEEEEEEEEecCCCCCEE
Confidence 67899999999999999999999999999999999999999975444433445899999999999999999999999999
Q ss_pred EEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEECCCCcccCCCHHHHHhhccccCCCCCCCcccCCCCCCC--
Q 019520 216 NVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKL-- 293 (340)
Q Consensus 216 ~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlvD~~tRRpvrIP~evre~i~~y~~~~~~~i~~~~rkl~kl-- 293 (340)
+|+||+.+.++.++.|+|.|+|.++|+++++|+|.||+||++||||+|+|+++.+.+.++..+.. .+....+++++
T Consensus 81 ~i~Tw~~~~~~~~~~R~f~i~d~~~G~~l~~a~s~WvliD~~trr~~ri~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 158 (261)
T PF01643_consen 81 TIETWPSGFKRFFAYRDFEIYDAEDGELLARATSIWVLIDLETRRPVRIPEEIIEEYGPFFPDEL--PEEDIRKLPKIPK 158 (261)
T ss_dssp EEEEEEEEE-SSEEEEEEEEE--TTS-EEEEEEEEEEEEETTT-SEE---GGCTCCGGGGB------T-EESSS------
T ss_pred EEEEEeccCCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEhhhCCcccCCHHHHhhhhhhccccc--ccccccccccccc
Confidence 99999999999999999999993389999999999999999999999999988776643333321 11122233333
Q ss_pred CCCcccceeccCCCCCCCCCccCCcchHHHHHHHHHhcccccc
Q 019520 294 GDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILEVDFLFSL 336 (340)
Q Consensus 294 ~~~~~~~~~~~~tVr~SDLD~NgHVNNv~Yi~wild~lP~e~~ 336 (340)
....+.....+++|||||||+||||||++|++|++|+||.+++
T Consensus 159 ~~~~~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~~~ 201 (261)
T PF01643_consen 159 NPPEEPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPEEFL 201 (261)
T ss_dssp ----TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-HHHH
T ss_pred cCChhhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcchhh
Confidence 2222344567899999999999999999999999999999865
No 4
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=99.97 E-value=8.4e-31 Score=239.16 Aligned_cols=187 Identities=24% Similarity=0.363 Sum_probs=153.8
Q ss_pred eeEEEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEE
Q 019520 137 FIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVN 216 (340)
Q Consensus 137 ~vf~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~ 216 (340)
.++++.+.|.+++.|+.|++..+..+.+..++|..+...+|.+. ...+.+.++.|+|.|+.+++.|+|.++|.|+
T Consensus 2 ~~~k~~~~vP~~~~d~~g~i~~~~~l~l~~~i~~~Qsi~lg~~~-----~~~lee~~l~WiV~~~~i~~ir~pef~e~it 76 (250)
T COG3884 2 SVDKQNMPVPFYWPDAVGDIDITSRLRLDLQIRGIQSIGLGQLD-----VAGLEEYHLLWIVRRTEIDVIRPPEFGEMIT 76 (250)
T ss_pred cchhhcCCCccchhhhcCCcchhhhhhhhhhhcceeecccchhh-----hhhHhhcCceEEEEEEEEEEeeccccCCcce
Confidence 35667888999999999999999999999999988877776421 2347789999999999999999999999999
Q ss_pred EEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEECCCCcccCCCHHHHHhhccccCCCCCCCcccCCCCC-CCCC
Q 019520 217 VETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLP-KLGD 295 (340)
Q Consensus 217 V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlvD~~tRRpvrIP~evre~i~~y~~~~~~~i~~~~rkl~-kl~~ 295 (340)
|+||+..+.++++.|+|++.+ .|+.++++.+.|++||.+||||.++++++.+.+..-...+.... ...+. .++
T Consensus 77 i~t~~~s~~~ffcyrrf~~~~--~gg~Lie~~a~wilmn~dTrkp~ri~~d~la~~~~t~~~k~~r~---~~~l~~~~e- 150 (250)
T COG3884 77 IETWCSSISNFFCYRRFRLDG--RGGGLIEIEAFWILMNRDTRKPARITDDLLAPFNLTTEKKRLRW---PKYLSSRLE- 150 (250)
T ss_pred EEEeeccccceEEEEEEEEec--CCCcEEEEEEEEEEEccccccceeccHHHhhhhcccchhheecc---ccccCcccc-
Confidence 999999999999999999998 58889999999999999999999999999765543221111111 11121 122
Q ss_pred CcccceeccCCCCCCCCCccCCcchHHHHHHHHHhccccccc
Q 019520 296 STADYVRRGLTPRWSDLDVNQHVNNVKYIGWILEVDFLFSLY 337 (340)
Q Consensus 296 ~~~~~~~~~~tVr~SDLD~NgHVNNv~Yi~wild~lP~e~~~ 337 (340)
..+...+.|||+|||+|+||||++|++|++|.++.+++-
T Consensus 151 ---~s~~~~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~ 189 (250)
T COG3884 151 ---ASEIHDFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLK 189 (250)
T ss_pred ---ccccccceeEEEeeccccccccceehHHHHHHHhhhhHh
Confidence 223467999999999999999999999999999987764
No 5
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.95 E-value=6.9e-27 Score=197.35 Aligned_cols=128 Identities=17% Similarity=0.233 Sum_probs=118.8
Q ss_pred eEEEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEE
Q 019520 138 IFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNV 217 (340)
Q Consensus 138 vf~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V 217 (340)
+|..+++|||+|||++|||+|++|++|||+|+.+|+..+|+. . ..+.+.|++|++++++|+|++|+++||+|+|
T Consensus 2 ~f~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~-----~-~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v 75 (130)
T PRK10800 2 LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFS-----Q-QALLAERVAFVVRKMTVEYYAPARLDDMLEV 75 (130)
T ss_pred ceEEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCC-----H-HHHHhCCCEEEEEEEEEEEcCcccCCCEEEE
Confidence 577899999999999999999999999999999999998762 2 3466789999999999999999999999999
Q ss_pred EEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEECCCCcccCCCHHHHHhh
Q 019520 218 ETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEI 272 (340)
Q Consensus 218 ~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlvD~~tRRpvrIP~evre~i 272 (340)
+||+.++|+.++...|++++. +|+++++|.++||++|.+++||++||+++++.+
T Consensus 76 ~t~v~~~~~~s~~~~~~i~~~-~g~~~a~~~~~~v~~d~~~~r~~~iP~~l~~~~ 129 (130)
T PRK10800 76 QSEITSMRGTSLTFTQRIVNA-EGTLLNEAEVLIVCVDPLKMKPRALPKSIVAEF 129 (130)
T ss_pred EEEEEeeCcEEEEEEEEEEcC-CCeEEEEEEEEEEEEECCCCcCcCCCHHHHHhh
Confidence 999999999999889999985 899999999999999999999999999998765
No 6
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=99.93 E-value=3.7e-25 Score=184.51 Aligned_cols=124 Identities=18% Similarity=0.229 Sum_probs=114.7
Q ss_pred EEEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHh-hCCcEEEEEeeEEEEcccCCCCCEEEE
Q 019520 139 FRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMA-KKNLIWVVTRMQVVVDRYPTWNDVVNV 217 (340)
Q Consensus 139 f~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~-~~gl~WVV~r~~Ie~~r~p~~gD~V~V 217 (340)
|+.+++|||+|||++|||+++.|++|||+|+..++.++|+. . ..+. +.|.+|++++++|+|++|+++||.|.|
T Consensus 1 f~~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~-----~-~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v 74 (126)
T TIGR02799 1 FRWPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFE-----Q-SALLEETGLVFVVRSMELDYLKPARLDDLLTV 74 (126)
T ss_pred CcceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCC-----H-HHHhhcCCcEEEEEEEEEEEcCcccCCCEEEE
Confidence 45689999999999999999999999999999999999872 2 3453 569999999999999999999999999
Q ss_pred EEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEECCCCcccCCCHHHHH
Q 019520 218 ETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQ 270 (340)
Q Consensus 218 ~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlvD~~tRRpvrIP~evre 270 (340)
+||+.++++.++.+.|.|++ +|+++++|.++||++|.+++||+++|+++++
T Consensus 75 ~~~v~~~~~~~~~~~~~i~~--~g~~~a~~~~~~v~vd~~~~~~~~~p~~~~~ 125 (126)
T TIGR02799 75 TTRVVELKGASLVFAQEVRR--GDTLLCEATVEVACVDASDMRPRRLPAELRA 125 (126)
T ss_pred EEEEEecCceEEEEEEEEEe--CCEEEEEEEEEEEEEECCCCcCcCCCHHHhh
Confidence 99999999999999999995 6899999999999999999999999999875
No 7
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=99.93 E-value=2.5e-24 Score=185.20 Aligned_cols=132 Identities=20% Similarity=0.286 Sum_probs=122.1
Q ss_pred CeeEEEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEE
Q 019520 136 GFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVV 215 (340)
Q Consensus 136 g~vf~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V 215 (340)
...|+.+++|||+|||++|||+|++|+.|||+|++++++.+|+. ..++.+.|+.|+|++++|+|++|.++||.+
T Consensus 3 ~~~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~------~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l 76 (137)
T COG0824 3 SFPFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFD------YADLEEGGIAFVVVEAEIDYLRPARLGDVL 76 (137)
T ss_pred CcceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCC------HHHHhhCCcEEEEEEEEeEECCCccCCCEE
Confidence 35678899999999999999999999999999999999998762 245777789999999999999999999999
Q ss_pred EEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEECCCCcccCCCHHHHHhhccc
Q 019520 216 NVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPY 275 (340)
Q Consensus 216 ~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlvD~~tRRpvrIP~evre~i~~y 275 (340)
+|+||+.++|+.++...|+|++. ++++++|.+++|++|.+++||+++|+++++.+..+
T Consensus 77 ~v~~~v~~~~~~s~~~~~~i~~~--~~l~a~~~~~~V~v~~~~~kp~~~P~~~~~~l~~~ 134 (137)
T COG0824 77 TVRTRVEELGGKSLTLGYEIVNE--DELLATGETTLVCVDLKTGKPVPLPPELREALEAL 134 (137)
T ss_pred EEEEEEEeecCeEEEEEEEEEeC--CEEEEEEEEEEEEEECCCCCcccCCHHHHHHHHHh
Confidence 99999999999999999999985 49999999999999999999999999999988764
No 8
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=99.92 E-value=4.7e-24 Score=174.64 Aligned_cols=117 Identities=13% Similarity=0.174 Sum_probs=107.8
Q ss_pred EEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEEEE
Q 019520 142 NFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWV 221 (340)
Q Consensus 142 ~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~Twv 221 (340)
+++||++|||++|||+++.|++|+|+|+.+|++.+|+ + ..++.+.|++|++++++++|++|+++||.|+|+||+
T Consensus 1 ~~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~-----~-~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~ 74 (117)
T TIGR00051 1 PVRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGF-----P-QSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQI 74 (117)
T ss_pred CEEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCC-----C-HHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEE
Confidence 3789999999999999999999999999999999876 2 245778899999999999999999999999999999
Q ss_pred EEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEECCCCcccCCC
Q 019520 222 SASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMP 265 (340)
Q Consensus 222 ~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlvD~~tRRpvrIP 265 (340)
.++|+.++.+.|+|++. +|++++.+.++||++|.+++|+++||
T Consensus 75 ~~~~~~s~~~~~~i~~~-~~~~~~~~~~~~v~~d~~~~r~~~ip 117 (117)
T TIGR00051 75 EELNGFSFVFSQEIFNE-DEALLKAATVIVVCVDPKKQKPVAIP 117 (117)
T ss_pred EecCcEEEEEEEEEEeC-CCcEEEeeEEEEEEEECCCCeEcCCC
Confidence 99999999999999985 67888888888999999999999987
No 9
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=99.87 E-value=6.1e-21 Score=158.15 Aligned_cols=119 Identities=20% Similarity=0.295 Sum_probs=100.0
Q ss_pred eecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEEEEEEe
Q 019520 145 IRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSAS 224 (340)
Q Consensus 145 VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~ 224 (340)
|||+||| +|||+|++|++|+++|+.+++...|+ ...+...|+++++++.+|+|++|.++||.++|++++.++
T Consensus 1 Vr~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~-------~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~ 72 (121)
T PF13279_consen 1 VRWSDTD-NGHVNNARYLRYFEEAREEFLEELGL-------YDELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEI 72 (121)
T ss_dssp --GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTS-------CHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEE
T ss_pred CCHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcch-------hhHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEE
Confidence 7999999 99999999999999999999998886 145778899999999999999999999999999999999
Q ss_pred CCcEEEEEEEEEECCCCcE--EEEEEEEEEEEECCCCcccCCCHHHHHhh
Q 019520 225 GKNGMRRDWLIRNAKTGET--LTRATSLWVMMNKLTRRLSKMPDEVRQEI 272 (340)
Q Consensus 225 gr~~~~R~f~I~d~~~Gev--ia~A~S~wVlvD~~tRRpvrIP~evre~i 272 (340)
++.++...|.|++.++|+. +|+|.+++|++|.++ |+.++|++++++|
T Consensus 73 ~~~s~~~~~~i~~~~~g~~~~~a~~~~~~v~~d~~~-r~~~~P~~~~~~l 121 (121)
T PF13279_consen 73 GGKSFRFEQEIFRPADGKGELAATGRTVMVFVDYKT-RSVPIPDELREAL 121 (121)
T ss_dssp ESSEEEEEEEEEECSTTEEEEEEEEEEEEEEEETTT-CE-B--HHHHHHH
T ss_pred CCcEEEEEEEEEEcCCCceEEEEEEEEEEEEEeCCC-CcCCCCHHHHhcC
Confidence 9999999999998435655 999999999999999 6999999999864
No 10
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.86 E-value=4.5e-21 Score=196.24 Aligned_cols=136 Identities=10% Similarity=0.070 Sum_probs=123.4
Q ss_pred CeeEEEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEE
Q 019520 136 GFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVV 215 (340)
Q Consensus 136 g~vf~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V 215 (340)
..+++.+++|+++|||++|||+|.+|++|||+++.+|+..+|+. ......+.+|++++++|+|++|+++||.|
T Consensus 343 ~~~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~-------~~~~~~~~~~vvv~~~i~y~rp~~~gD~v 415 (495)
T PRK07531 343 QPLRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVD-------AAYVAAGHSYYTVETHIRHLGEAKAGQAL 415 (495)
T ss_pred CceEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCC-------HHHHhcCCcEEEEEEEEEEcccCCCCCEE
Confidence 44567899999999999999999999999999999999998862 22344589999999999999999999999
Q ss_pred EEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEECCCCcccCCCHHHHHhhccccCCC
Q 019520 216 NVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNS 279 (340)
Q Consensus 216 ~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlvD~~tRRpvrIP~evre~i~~y~~~~ 279 (340)
+|+||+..+++.++.+.|+|++ .+|+++++|.++||++|.++||++++|+++++.+..+..+.
T Consensus 416 ~I~t~v~~~~~~s~~~~~~i~~-~~g~l~A~g~~~~v~vD~~trr~~~iP~e~r~~l~~~~~~~ 478 (495)
T PRK07531 416 HVETQLLSGDEKRLHLFHTLYD-AGGELIATAEHMLLHVDLKAGKAVPAPAAVLAALKPIAEAH 478 (495)
T ss_pred EEEEEEEecCCcEEEEEEEEEC-CCCcEEEEEEEEEEEEECCCCccCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999998 48999999999999999999999999999999888765443
No 11
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.75 E-value=4.5e-17 Score=129.13 Aligned_cols=110 Identities=21% Similarity=0.239 Sum_probs=101.4
Q ss_pred EEEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEE
Q 019520 139 FRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVE 218 (340)
Q Consensus 139 f~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~ 218 (340)
|+.++.|+++|||.+||+++..|++|+++++..++...|+. ...+...+..|++.+.+++|.+|+.+||+|+|+
T Consensus 1 ~~~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~ 74 (110)
T cd00586 1 FTLEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLG------YDELEEQGLGLVVVELEIDYLRPLRLGDRLTVE 74 (110)
T ss_pred CcEEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCC------HHHHHhCCceEEEEEeEeeEcCccCCCCEEEEE
Confidence 45689999999999999999999999999999999998863 234567899999999999999999999999999
Q ss_pred EEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEE
Q 019520 219 TWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMN 255 (340)
Q Consensus 219 Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlvD 255 (340)
+|+.+.++.++.+.+.+++. +|++++++.+.|+++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~-~g~~~a~~~~~~~~~d 110 (110)
T cd00586 75 TRVLRLGRKSFTFEQEIFRE-DGELLATAETVLVCVD 110 (110)
T ss_pred EEEEecCcEEEEEEEEEECC-CCeEEEEEEEEEEEeC
Confidence 99999999999999999985 7999999999999987
No 12
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.36 E-value=4e-11 Score=98.48 Aligned_cols=113 Identities=15% Similarity=0.085 Sum_probs=94.4
Q ss_pred eeEEEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEee-EEEEcccCCCCCEE
Q 019520 137 FIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRM-QVVVDRYPTWNDVV 215 (340)
Q Consensus 137 ~vf~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~-~Ie~~r~p~~gD~V 215 (340)
-.+...+.|++.+||+.|+++.+.|+.++++++..++... . +...+.... +++|.+|..+||.|
T Consensus 6 ~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~-------------~--~~~~~~~~~~~~~f~~p~~~gd~l 70 (123)
T cd03442 6 TELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRH-------------A--GGRVVTASVDRIDFLKPVRVGDVV 70 (123)
T ss_pred cceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHH-------------h--CCcEEEEEECceEEcCccccCcEE
Confidence 4566789999999999999999999999999987665421 1 112444455 79999999999999
Q ss_pred EEEEEEEEeCCcEEEEEEEEEECC----CCcEEEEEEEEEEEEECCCCcccCCC
Q 019520 216 NVETWVSASGKNGMRRDWLIRNAK----TGETLTRATSLWVMMNKLTRRLSKMP 265 (340)
Q Consensus 216 ~V~Twv~~~gr~~~~R~f~I~d~~----~Gevia~A~S~wVlvD~~tRRpvrIP 265 (340)
.+++++.+.|+.++..++++++.+ +++++++|..++|++| .++||.++|
T Consensus 71 ~i~~~v~~~g~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~-~~~~~~~~p 123 (123)
T cd03442 71 ELSARVVYTGRTSMEVGVEVEAEDPLTGERRLVTSAYFTFVALD-EDGKPRPVP 123 (123)
T ss_pred EEEEEEEEecCCeEEEEEEEEEecCCCCcEEEEEEEEEEEEEEC-CCCCeeeCC
Confidence 999999999999999999999752 2479999999999999 568998887
No 13
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=99.03 E-value=1.1e-08 Score=75.57 Aligned_cols=97 Identities=21% Similarity=0.217 Sum_probs=87.5
Q ss_pred EEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEEE
Q 019520 141 QNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETW 220 (340)
Q Consensus 141 ~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~Tw 220 (340)
..++|+++|+|.+++++...++.++++++..++...+ ..+..+++.+++++|.+++..||.|.++++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~ 69 (100)
T cd03440 3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLG-------------GRGLGAVTLSLDVRFLRPVRPGDTLTVEAE 69 (100)
T ss_pred EEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhc-------------cCCCeEEEEEEEeEEecCCCCCCEEEEEEE
Confidence 4789999999999999999999999999999987542 156789999999999999999999999999
Q ss_pred EEEeCCcEEEEEEEEEECCCCcEEEEEEEEE
Q 019520 221 VSASGKNGMRRDWLIRNAKTGETLTRATSLW 251 (340)
Q Consensus 221 v~~~gr~~~~R~f~I~d~~~Gevia~A~S~w 251 (340)
+...++..+.....+.+. +|++++.+...+
T Consensus 70 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 99 (100)
T cd03440 70 VVRVGRSSVTVEVEVRNE-DGKLVATATATF 99 (100)
T ss_pred EEeccccEEEEEEEEECC-CCCEEEEEEEEe
Confidence 999999988888899885 799999997765
No 14
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=98.89 E-value=4.1e-08 Score=74.38 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=71.1
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEE
Q 019520 153 DGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRD 232 (340)
Q Consensus 153 ~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~ 232 (340)
+|+|+.+.|+.|+++++..++...+. .+...++.+.+++|.+|.+.||.|++++++.+.|+.++...
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~-------------~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~ 67 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGG-------------DGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVE 67 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHS-------------STEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhcc-------------CCcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEE
Confidence 59999999999999999999987653 16789999999999999999999999999999999999999
Q ss_pred EEEEECCCCcEEE
Q 019520 233 WLIRNAKTGETLT 245 (340)
Q Consensus 233 f~I~d~~~Gevia 245 (340)
+++++. ++++||
T Consensus 68 ~~v~~~-~~~~~~ 79 (79)
T PF03061_consen 68 VEVYSE-DGRLCA 79 (79)
T ss_dssp EEEEET-TSCEEE
T ss_pred EEEEEC-CCcEEC
Confidence 999995 787775
No 15
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=98.70 E-value=7.9e-07 Score=71.86 Aligned_cols=102 Identities=10% Similarity=0.036 Sum_probs=88.5
Q ss_pred CeeEEEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEE
Q 019520 136 GFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVV 215 (340)
Q Consensus 136 g~vf~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V 215 (340)
+...+..+++...+||..|+++...|..+++.++...+.... ..+...++.+++++|.+|+.. +.|
T Consensus 11 ~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~-------------~~~~~~~~~~~~i~f~~p~~~-~~v 76 (113)
T cd03443 11 PGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSAL-------------PPGALAVTVDLNVNYLRPARG-GDL 76 (113)
T ss_pred CCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhcc-------------CCCCceEEEEEEEeEEcCCCC-CeE
Confidence 345667899999999999999999999999999987765431 134568889999999999999 999
Q ss_pred EEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 019520 216 NVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (340)
Q Consensus 216 ~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wV 252 (340)
.+++++.+.|+.....+..+++. +|+++++|+..|+
T Consensus 77 ~~~~~v~~~g~~~~~~~~~~~~~-~~~~~a~a~~~~~ 112 (113)
T cd03443 77 TARARVVKLGRRLAVVEVEVTDE-DGKLVATARGTFA 112 (113)
T ss_pred EEEEEEEecCceEEEEEEEEECC-CCCEEEEEEEEEe
Confidence 99999999999999889999984 6999999999886
No 16
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=98.67 E-value=1.2e-07 Score=89.78 Aligned_cols=96 Identities=18% Similarity=0.333 Sum_probs=70.1
Q ss_pred CeeEEEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEE
Q 019520 136 GFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVV 215 (340)
Q Consensus 136 g~vf~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V 215 (340)
...+..+++||++|+|.||||||..|++|+.++--. ++.+ .-.+.++.|.|+++..+||.|
T Consensus 163 ~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~----------------~~~~---~~~~~~i~I~y~~E~~~gd~i 223 (261)
T PF01643_consen 163 EPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPE----------------EFLE---KYQIKSIDINYKKEIRYGDTI 223 (261)
T ss_dssp TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-H----------------HHHC---CEEEEEEEEEE-S--BTT-EE
T ss_pred hhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcc----------------hhhc---cCCcEEEEEEEccccCCCCEE
Confidence 456788999999999999999999999999887422 1111 245789999999999999999
Q ss_pred EEEEEEEEeC-CcEEEEEEEEEECCCCcEEEEEEEEE
Q 019520 216 NVETWVSASG-KNGMRRDWLIRNAKTGETLTRATSLW 251 (340)
Q Consensus 216 ~V~Twv~~~g-r~~~~R~f~I~d~~~Gevia~A~S~w 251 (340)
.+.+.+.... .......+.|.+. +|++++++.+.|
T Consensus 224 ~~~~~~~~~~~~~~~~~~h~i~~~-~g~~~~~~~~~W 259 (261)
T PF01643_consen 224 TSYTEVEKDEEEDGLSTLHEIRNE-DGEEVARARTEW 259 (261)
T ss_dssp EEEEEEEEECCTTEEEEEEEEECT--TCEEEEEEEEE
T ss_pred EEEEEEcccccCCceEEEEEEEcC-CCceEEEEEEEE
Confidence 9999876443 3345566888885 599999999999
No 17
>PLN02370 acyl-ACP thioesterase
Probab=98.44 E-value=1.1e-06 Score=88.53 Aligned_cols=94 Identities=17% Similarity=0.260 Sum_probs=68.6
Q ss_pred EEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEE
Q 019520 140 RQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVET 219 (340)
Q Consensus 140 ~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~T 219 (340)
+..++|||+|+|.||||||..|++|+.|+.-. ++.+ ...+.++.|+|++..++||.|.+.+
T Consensus 303 ~~~~~VRysDLD~NgHVNNvkYi~Wild~lP~----------------e~l~---~~~l~~i~I~Y~kE~~~gd~V~s~~ 363 (419)
T PLN02370 303 RKGLTPRWSDLDVNQHVNNVKYIGWILESAPP----------------PIME---SHELAAITLEYRRECGRDSVLQSLT 363 (419)
T ss_pred eeeeeecHHHCcccCccccHHHHHHHHhhCch----------------hhhh---cceEEEEEEEEcccCCCCCEEEEEE
Confidence 34599999999999999999999999997421 1111 1246899999999999999999887
Q ss_pred EEEEe--CC---cE-EEEEEEEEECCCCcEEEEEEEEEEE
Q 019520 220 WVSAS--GK---NG-MRRDWLIRNAKTGETLTRATSLWVM 253 (340)
Q Consensus 220 wv~~~--gr---~~-~~R~f~I~d~~~Gevia~A~S~wVl 253 (340)
...+. +. .. ......+.. ++|++++++++.|-=
T Consensus 364 ~~~~~~~~~~~~~~~~~~~h~~~~-~dG~e~a~a~t~Wr~ 402 (419)
T PLN02370 364 AVSGTGIGNLGTAGDVECQHLLRL-EDGAEIVRGRTEWRP 402 (419)
T ss_pred eecccccccccCCCcceEEEEEEc-CCCeEEEEEEEEEEE
Confidence 75321 11 11 112233444 489999999999963
No 18
>PRK10694 acyl-CoA esterase; Provisional
Probab=98.41 E-value=1.4e-05 Score=68.64 Aligned_cols=111 Identities=15% Similarity=0.056 Sum_probs=88.8
Q ss_pred EEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEee-EEEEcccCCCCCEEEEE
Q 019520 140 RQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRM-QVVVDRYPTWNDVVNVE 218 (340)
Q Consensus 140 ~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~-~Ie~~r~p~~gD~V~V~ 218 (340)
...+.+...+++..|.++=..+|.|+.+++.-.+... .+-.++.+++ .++|.+|.+.||.|+++
T Consensus 13 ~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~---------------~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~ 77 (133)
T PRK10694 13 VLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEI---------------AHGRVVTVRVEGMTFLRPVAVGDVVCCY 77 (133)
T ss_pred EEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHH---------------cCCceEEEEECceEECCCcccCcEEEEE
Confidence 3457899999999999999999999999876555432 1234677777 67999999999999999
Q ss_pred EEEEEeCCcEEEEEEEEEECC-----CC--cEEEEEEEEEEEEECCCCcccCCCH
Q 019520 219 TWVSASGKNGMRRDWLIRNAK-----TG--ETLTRATSLWVMMNKLTRRLSKMPD 266 (340)
Q Consensus 219 Twv~~~gr~~~~R~f~I~d~~-----~G--evia~A~S~wVlvD~~tRRpvrIP~ 266 (340)
.++...|+.++....+++.+. .| ..++++..++|.+| +.+||.++|+
T Consensus 78 a~V~~~g~sS~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd-~~g~p~~vp~ 131 (133)
T PRK10694 78 ARCVKTGTTSISINIEVWVKKVASEPIGQRYKATEALFTYVAVD-PEGKPRALPV 131 (133)
T ss_pred EEEEEccCceEEEEEEEEEeecccCCCCcEEEEEEEEEEEEEEC-CCCCEEeCCC
Confidence 999999999998777777421 12 34677888888898 5789998874
No 19
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=97.96 E-value=0.00046 Score=61.07 Aligned_cols=113 Identities=13% Similarity=0.075 Sum_probs=88.8
Q ss_pred EEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEEE
Q 019520 141 QNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETW 220 (340)
Q Consensus 141 ~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~Tw 220 (340)
....+-..|++++|.++=..+|.|+.+++.-.+... ..+..--+.==++.|.+|.+.||.|.+..+
T Consensus 16 ~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~--------------a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~ 81 (157)
T COG1607 16 LRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRH--------------AGGRVVTASVDSVDFKKPVRVGDIVCLYAR 81 (157)
T ss_pred EEEEecCCccCcccccccHHHHHHHHHHHHHHHHHH--------------hCCeEEEEEeceEEEccccccCcEEEEEEE
Confidence 578899999999999999999999999986655432 123222233346899999999999999999
Q ss_pred EEEeCCcEEEEEEEEEEC--C--CCcEEEEEEEEEEEEECCCCcccCCCHHH
Q 019520 221 VSASGKNGMRRDWLIRNA--K--TGETLTRATSLWVMMNKLTRRLSKMPDEV 268 (340)
Q Consensus 221 v~~~gr~~~~R~f~I~d~--~--~Gevia~A~S~wVlvD~~tRRpvrIP~ev 268 (340)
+...|+.++...-+++.+ . ..+..+.|.-++|-+|-+ +||.++|++.
T Consensus 82 v~~~GrTSm~V~Vev~~~~~~~~~~~~~t~~~ft~VAvd~~-gkP~~vp~~~ 132 (157)
T COG1607 82 VVYTGRTSMEVGVEVWAEDIRSGERRLATSAYFTFVAVDED-GKPTPVPREE 132 (157)
T ss_pred EeecCcccEEEEEEEEEecccCCcceEeeeEEEEEEEECCC-CCcccCCccC
Confidence 999999999887777643 1 233566788888888865 9999999754
No 20
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=97.74 E-value=0.0015 Score=53.87 Aligned_cols=98 Identities=8% Similarity=-0.078 Sum_probs=80.1
Q ss_pred EEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEE
Q 019520 140 RQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVET 219 (340)
Q Consensus 140 ~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~T 219 (340)
+..+.++...++..|.++=..++.+++.+..-.... . ...+...+-++++++|.+|++-| .|.++.
T Consensus 19 ~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~-~------------~~~~~~~vt~~l~i~f~~p~~~g-~l~a~a 84 (117)
T TIGR00369 19 EATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYL-C------------NSGGQAVVGLELNANHLRPAREG-KVRAIA 84 (117)
T ss_pred EEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHh-h------------cCCCceEEEEEEEeeeccccCCC-EEEEEE
Confidence 557888888999999999999999988886322211 1 12344567779999999999999 999999
Q ss_pred EEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 019520 220 WVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (340)
Q Consensus 220 wv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wV 252 (340)
++.+.|+.....+-+++|+ +|+++++|+.++.
T Consensus 85 ~v~~~gr~~~~~~~~i~~~-~g~~va~~~~t~~ 116 (117)
T TIGR00369 85 QVVHLGRQTGVAEIEIVDE-QGRLCALSRGTTA 116 (117)
T ss_pred EEEecCceEEEEEEEEECC-CCCEEEEEEEEEc
Confidence 9999999988888899996 8999999998763
No 21
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=97.69 E-value=0.00017 Score=67.17 Aligned_cols=88 Identities=9% Similarity=0.022 Sum_probs=67.9
Q ss_pred eEEEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEE
Q 019520 138 IFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNV 217 (340)
Q Consensus 138 vf~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V 217 (340)
.+...|.||++|+|.+|||||+.|..|+.|.-..++..+ .+ -.|+.++|.++...||+|+|
T Consensus 152 s~~~~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~---------------~~----p~r~~l~y~keva~G~~iti 212 (250)
T COG3884 152 SEIHDFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKL---------------YG----PLRLTLEYVKEVAPGEKITI 212 (250)
T ss_pred cccccceeEEEeeccccccccceehHHHHHHHhhhhHhh---------------cc----cceeEEEEEcccCCCCeEEE
Confidence 456689999999999999999999999999866544332 11 25889999999999999999
Q ss_pred EEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEE
Q 019520 218 ETWVSASGKNGMRRDWLIRNAKTGETLTRATSLW 251 (340)
Q Consensus 218 ~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~w 251 (340)
.+...+.+..- .+.. +|.+.+.+..+|
T Consensus 213 ~~e~~~~~s~~------~f~~-d~~v~~lt~i~~ 239 (250)
T COG3884 213 VYEVHPLESKH------QFTS-DGQVNALTYIVG 239 (250)
T ss_pred EEEEcccCcee------eecC-CcceEEEEEEEe
Confidence 99998765431 1222 677777776665
No 22
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=97.45 E-value=0.0061 Score=50.14 Aligned_cols=96 Identities=14% Similarity=0.018 Sum_probs=78.1
Q ss_pred EEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEEE
Q 019520 141 QNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETW 220 (340)
Q Consensus 141 ~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~Tw 220 (340)
..+.++-..++..|.++=..++.++..+....+.. .+..-+-...+++|.+|...||.|.++.+
T Consensus 18 ~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~----------------~~~~~~t~~~~i~f~rp~~~G~~l~~~a~ 81 (114)
T TIGR02286 18 VAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNS----------------YGDAAVAAQCTIDFLRPGRAGERLEAEAV 81 (114)
T ss_pred EEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcC----------------CCCceEEEEEEEEEecCCCCCCEEEEEEE
Confidence 37888889999999999999999999885432211 11113457889999999999999999999
Q ss_pred EEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEE
Q 019520 221 VSASGKNGMRRDWLIRNAKTGETLTRATSLWVM 253 (340)
Q Consensus 221 v~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVl 253 (340)
+.+.|+.....+-+++++ +|++++.++.+|-.
T Consensus 82 v~~~g~~~~~~~~~i~~~-~~~~va~~~~t~~~ 113 (114)
T TIGR02286 82 EVSRGGRTGTYDVEVVNQ-EGELVALFRGTSRR 113 (114)
T ss_pred EEEeCCcEEEEEEEEEcC-CCCEEEEEEEEEEE
Confidence 999999877777889984 89999999998854
No 23
>PLN02647 acyl-CoA thioesterase
Probab=97.31 E-value=0.0042 Score=63.39 Aligned_cols=117 Identities=14% Similarity=0.103 Sum_probs=88.2
Q ss_pred EEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEe-eEEEEcccCCCCCEEEEEEEE
Q 019520 143 FSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTR-MQVVVDRYPTWNDVVNVETWV 221 (340)
Q Consensus 143 ~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r-~~Ie~~r~p~~gD~V~V~Twv 221 (340)
..+|-.+++..|+++.+.+|.++.+++.--+....-..+ .....+..|-+. =+|+|.+|.+.||.|.|...+
T Consensus 98 ~~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~-------~~~~p~~vVTAsVD~i~F~~Pi~~g~~v~l~g~V 170 (437)
T PLN02647 98 FILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDDD-------STTRPLLLVTASVDKIVLKKPIRVDVDLKIVGAV 170 (437)
T ss_pred hhhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCCc-------ccCCcceEEEEEECcEEEcCCCcCCcEEEEEEEE
Confidence 367777899999999999999999998766654321101 112233333333 367899999999999999999
Q ss_pred EEeCCcEEEEEEEEEECC------CCcEEEEEEEEEEEEECCCCcccCCCH
Q 019520 222 SASGKNGMRRDWLIRNAK------TGETLTRATSLWVMMNKLTRRLSKMPD 266 (340)
Q Consensus 222 ~~~gr~~~~R~f~I~d~~------~Gevia~A~S~wVlvD~~tRRpvrIP~ 266 (340)
...|++++...-+++.+. ...++++|..++|.+|.+++||+++|+
T Consensus 171 t~vGrSSMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D~~~gkp~pVp~ 221 (437)
T PLN02647 171 TWVGRSSMEIQLEVIQPTKDESNTSDSVALTANFTFVARDSKTGKSAPVNR 221 (437)
T ss_pred EEecCCeEEEEEEEEEccccCCCCcEEEEEEEEEEEEEEcCCCCCeeeCCC
Confidence 999999998777777531 123688999999999987899988764
No 24
>PRK10293 acyl-CoA esterase; Provisional
Probab=96.97 E-value=0.038 Score=47.58 Aligned_cols=100 Identities=8% Similarity=-0.120 Sum_probs=80.9
Q ss_pred EEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEE
Q 019520 140 RQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVET 219 (340)
Q Consensus 140 ~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~T 219 (340)
+..+.|+-..+.+.|.++=..++.+++.+..-..... ...+...+-.+++++|.+|.+-| .|..+-
T Consensus 37 ~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~-------------~~~~~~~vTiel~infl~p~~~g-~l~a~a 102 (136)
T PRK10293 37 EATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLC-------------TEGEQKVVGLEINANHVRSAREG-RVRGVC 102 (136)
T ss_pred EEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhc-------------ccCCceEEEEEEEeEEecccCCc-eEEEEE
Confidence 4467788888999999999999999987653322211 12345678889999999999877 699999
Q ss_pred EEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 019520 220 WVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMM 254 (340)
Q Consensus 220 wv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlv 254 (340)
++.+.||.-+..+-+++|+ +|++++.++.++.++
T Consensus 103 ~vv~~Gr~~~~~~~~v~d~-~g~l~A~~~~t~~i~ 136 (136)
T PRK10293 103 KPLHLGSRHQVWQIEIFDE-KGRLCCSSRLTTAIL 136 (136)
T ss_pred EEEecCCCEEEEEEEEEeC-CCCEEEEEEEEEEEC
Confidence 9999999988888999996 899999999998763
No 25
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=96.87 E-value=0.00027 Score=55.31 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=27.7
Q ss_pred ccCCCCCCCCCccCCcchHHHHHHHHHhccc
Q 019520 303 RGLTPRWSDLDVNQHVNNVKYIGWILEVDFL 333 (340)
Q Consensus 303 ~~~tVr~SDLD~NgHVNNv~Yi~wild~lP~ 333 (340)
..++|+++|+|.||||||..|++|+.++...
T Consensus 3 ~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~ 33 (110)
T cd00586 3 LEIRVRFGDTDAAGHVNNARYLRYFEEAREE 33 (110)
T ss_pred EEEEEEEhhcCCCCEEchhHHHHHHHHHHHH
Confidence 3577999999999999999999999998753
No 26
>PRK10254 thioesterase; Provisional
Probab=96.80 E-value=0.094 Score=45.27 Aligned_cols=100 Identities=7% Similarity=-0.054 Sum_probs=81.7
Q ss_pred EEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEE
Q 019520 140 RQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVET 219 (340)
Q Consensus 140 ~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~T 219 (340)
+..+.++-..+.+.|.++=..++.+++.+..-..... ...+...+=.+++++|.||.+-| .|..+.
T Consensus 37 ~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~-------------~~~g~~~vTiel~in~Lrp~~~g-~l~a~a 102 (137)
T PRK10254 37 EAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLM-------------TRDGQCVVGTELNATHHRPVSEG-KVRGVC 102 (137)
T ss_pred EEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhh-------------CCCCCeEEEEEEEeEEeccCcCC-eEEEEE
Confidence 3456777778999999999999999988765444321 13456788899999999999876 799999
Q ss_pred EEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 019520 220 WVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMM 254 (340)
Q Consensus 220 wv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlv 254 (340)
.+.+.||.-...+-+|+|+ +|++++.++.+..++
T Consensus 103 ~vi~~Gr~~~v~~~~v~d~-~g~l~a~~~~t~~i~ 136 (137)
T PRK10254 103 QPLHLGRQNQSWEIVVFDE-QGRRCCTCRLGTAVL 136 (137)
T ss_pred EEEecCcCEEEEEEEEEcC-CCCEEEEEEEEEEEe
Confidence 9999999988888999995 899999999887654
No 27
>PRK11688 hypothetical protein; Provisional
Probab=96.63 E-value=0.076 Score=46.25 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=77.4
Q ss_pred EEEEeecCCCC--CCCCcCHHHHHHHHHHHHHHHHHHcCCC-CcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEE
Q 019520 141 QNFSIRSYEIG--ADGTASIETLMNHLQETALNHVMTAGLL-DAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNV 217 (340)
Q Consensus 141 ~~~~VR~~D~D--a~GhV~~~~yl~ylqeAa~~h~~~lGl~-~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V 217 (340)
..++++-..++ +.|.++=..++.++..+....+...... ..+.. ..+.......-+-++++++|.+|.+ |+.|++
T Consensus 41 ~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~-~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~a 118 (154)
T PRK11688 41 LSFKMQPELVGNIAQSILHGGVIASVLDVAGGLVCVGGILARHEDIS-EEELRQRLSRLGTIDLRVDYLRPGR-GERFTA 118 (154)
T ss_pred EEeeCCHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhhccccccccc-ccccccccccceEEEEEEEeeccCC-CCeEEE
Confidence 45677777785 6799999999999888765544332110 00000 0000011122356799999999996 999999
Q ss_pred EEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEE
Q 019520 218 ETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVM 253 (340)
Q Consensus 218 ~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVl 253 (340)
+.++.+.|+.....+-+|++. +|+++|+++.+|..
T Consensus 119 ~a~v~~~g~r~~~~~~~i~~~-~g~lvA~a~~t~~v 153 (154)
T PRK11688 119 TSSVLRAGNKVAVARMELHNE-QGVHIASGTATYLV 153 (154)
T ss_pred EEEEEEccCCEEEEEEEEECC-CCCEEEEEEEEEEe
Confidence 999999999887778899985 89999999998863
No 28
>COG5496 Predicted thioesterase [General function prediction only]
Probab=96.56 E-value=0.13 Score=43.95 Aligned_cols=110 Identities=10% Similarity=0.116 Sum_probs=86.2
Q ss_pred cCCeeEEEEEEeecCCCCCC-------CCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEc
Q 019520 134 QDGFIFRQNFSIRSYEIGAD-------GTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVD 206 (340)
Q Consensus 134 ~~g~vf~~~~~VR~~D~Da~-------GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~ 206 (340)
.+++.++.++.|+-.++++- ..+.-+.++.|+++|+.+.+.. .| ..|.+-|-++..++=.
T Consensus 2 ~~g~~~e~~~lv~dn~t~~~~~~~~~~~VlATp~mi~~~E~a~~el~~~------------~L-d~g~ttVG~ev~vrHl 68 (130)
T COG5496 2 MDGLTLEGEFLVRDNHTVPPAEGSGMLNVLATPAMIGFMENASYELLQP------------YL-DNGETTVGTEVLVRHL 68 (130)
T ss_pred CCceeeEEEEEecccccCchhHhCCccceeehHHHHHHHHHHHHHHHHh------------hC-cCCcceeeEEEEeeec
Confidence 46788999999999888832 2234456789999998887753 12 4688899999999999
Q ss_pred ccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEECCC
Q 019520 207 RYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLT 258 (340)
Q Consensus 207 r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlvD~~t 258 (340)
.+.--|.+|+|.+.+.++.+......-+.. .+|+.+.+|+-+-+.+|.++
T Consensus 69 a~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~--~~~~~Ig~g~h~R~iv~~~k 118 (130)
T COG5496 69 AATPPGLTVTIGARLEKVEGRKVKFRIIAM--EGGDKIGEGTHTRVIVPREK 118 (130)
T ss_pred cCCCCCCeEEEEEEEEEEeccEEEEEEEEe--eCCcEEeeeEEEEEEecHHH
Confidence 999999999999999999776654433344 37999999999999988553
No 29
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=96.24 E-value=0.068 Score=46.78 Aligned_cols=100 Identities=12% Similarity=0.047 Sum_probs=82.4
Q ss_pred EEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEE
Q 019520 140 RQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVET 219 (340)
Q Consensus 140 ~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~T 219 (340)
+.+++|....|++++.++......+.+......+- +.+....-|-+++.|.|..+...||.|.|+.
T Consensus 40 ~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~--------------~~~~~~~gvsvdLsvsyL~~AklGe~l~i~a 105 (148)
T KOG3328|consen 40 SCELKVTPDHLNRFKTLHGGATATLVDLITSAALL--------------MTSGFKPGVSVDLSVSYLSSAKLGEELEIEA 105 (148)
T ss_pred EEEEEeCHHHcCccccccccchhhHHHHHhhHHHH--------------hccCCCCceEEEEEhhhccccCCCCeEEEEE
Confidence 45899999999999999999888888877654322 1223344677899999999999999999999
Q ss_pred EEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEE
Q 019520 220 WVSASGKNGMRRDWLIRNAKTGETLTRATSLWVM 253 (340)
Q Consensus 220 wv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVl 253 (340)
.+.+.|+.-...+.+++...+|++++.++-+-.+
T Consensus 106 ~~vr~Gk~la~t~v~l~~K~t~kiia~grhtk~~ 139 (148)
T KOG3328|consen 106 TVVRVGKTLAFTDVELRRKSTGKIIAKGRHTKYF 139 (148)
T ss_pred EEeecCceEEEEEEEEEEcCCCeEEEecceEEEe
Confidence 9999999988888889987789999988865444
No 30
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.20 E-value=0.23 Score=42.39 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=84.1
Q ss_pred EEEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEE
Q 019520 139 FRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVE 218 (340)
Q Consensus 139 f~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~ 218 (340)
-+..+.+.-..+.+.|.++=..++..++.+..-......- ....-+=+.++++|.||.+-|+ |+.+
T Consensus 36 ~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~-------------~~~~~~ti~l~i~flr~~~~g~-v~a~ 101 (141)
T COG2050 36 AEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLG-------------VVALAVTLELNINFLRPVKEGD-VTAE 101 (141)
T ss_pred EEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccC-------------ccceeEEEEEEehhccCCCCCe-EEEE
Confidence 3456777778888999999999999999998766654321 1112267899999999999999 9999
Q ss_pred EEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEC
Q 019520 219 TWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNK 256 (340)
Q Consensus 219 Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlvD~ 256 (340)
..+.+.|+.-...+-++++.+.|++++.++.++..++.
T Consensus 102 a~v~~~G~~~~v~~i~v~~~~~~~lva~~~~t~~v~~~ 139 (141)
T COG2050 102 ARVLHLGRRVAVVEIEVKNDEGGRLVAKGTGTYAVLRK 139 (141)
T ss_pred EEEEeeCCEEEEEEEEEEECCCCeEEEEEEEEEEEecC
Confidence 99999999988888889964466999999999998864
No 31
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=96.12 E-value=0.085 Score=43.29 Aligned_cols=57 Identities=12% Similarity=0.044 Sum_probs=46.8
Q ss_pred cEEEEEeeEEEEcccCCCCCEEEEEEEEEEeCC--cEEEEEEEEEECCCCcEEEEEEEEE
Q 019520 194 LIWVVTRMQVVVDRYPTWNDVVNVETWVSASGK--NGMRRDWLIRNAKTGETLTRATSLW 251 (340)
Q Consensus 194 l~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr--~~~~R~f~I~d~~~Gevia~A~S~w 251 (340)
-..+....+++|.+|...||+|+++.++..... ........+.+. +|+++++|..+.
T Consensus 68 ~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~~-~g~~v~~g~~~~ 126 (128)
T cd03449 68 PGTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTNQ-NGEVVIEGEAVV 126 (128)
T ss_pred ceEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEeC-CCCEEEEEEEEE
Confidence 356677899999999999999999999987754 455666778884 799999998754
No 32
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.70 E-value=0.0043 Score=64.12 Aligned_cols=30 Identities=13% Similarity=0.071 Sum_probs=27.2
Q ss_pred eccCCCCCCCCCccCCcchHHHHHHHHHhc
Q 019520 302 RRGLTPRWSDLDVNQHVNNVKYIGWILEVD 331 (340)
Q Consensus 302 ~~~~tVr~SDLD~NgHVNNv~Yi~wild~l 331 (340)
..+++|++.|+|.||||||.+|++|+.++.
T Consensus 347 ~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar 376 (495)
T PRK07531 347 LVETKVPPAWVDYNGHMTEHRYLQVFGDTT 376 (495)
T ss_pred EEeEEECHHHcCCCCeEcHHHHHHHHHHHH
Confidence 457889999999999999999999999875
No 33
>PLN02322 acyl-CoA thioesterase
Probab=95.57 E-value=0.77 Score=40.55 Aligned_cols=102 Identities=7% Similarity=-0.116 Sum_probs=78.5
Q ss_pred EEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEE
Q 019520 140 RQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVET 219 (340)
Q Consensus 140 ~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~T 219 (340)
...+.|+...+.+.|.++=..++.+++.+.. +.... ...+...+=+++.++|.+|.+.||.|..+-
T Consensus 29 ~~~m~v~~~~~N~~G~vHGGv~atLaDta~g-~A~~~-------------~~~~~~~vTiel~infLrpa~~G~~L~Aea 94 (154)
T PLN02322 29 TGRLPVSPMCCQPFKVLHGGVSALIAESLAS-LGAHM-------------ASGFKRVAGIQLSINHLKSADLGDLVFAEA 94 (154)
T ss_pred EEEEECCHHHcCCCCCccHHHHHHHHHHHHH-HHHhh-------------ccCCCceEEEEEEEEEeccCCCCCEEEEEE
Confidence 3456777777999999999999999986653 22111 112234677999999999999999999999
Q ss_pred EEEEeCCcEEEEEEEEEECC-----CCcEEEEEEEEEEEEE
Q 019520 220 WVSASGKNGMRRDWLIRNAK-----TGETLTRATSLWVMMN 255 (340)
Q Consensus 220 wv~~~gr~~~~R~f~I~d~~-----~Gevia~A~S~wVlvD 255 (340)
.+.+.|+.....+-+|++.. +|++++.++.+..++.
T Consensus 95 ~vv~~Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~~~ 135 (154)
T PLN02322 95 TPVSTGKTIQVWEVKLWKTTDKDKANKILISSSRVTLICNL 135 (154)
T ss_pred EEEecCCCEEEEEEEEEECCCCcccCCeEEEEEEEEEEEcc
Confidence 99999999888888898831 2789999998776553
No 34
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=94.73 E-value=0.23 Score=49.41 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=83.7
Q ss_pred CCeeEEEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCE
Q 019520 135 DGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDV 214 (340)
Q Consensus 135 ~g~vf~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~ 214 (340)
.+.-+...+.|...-++..|.+++..+-..+.++....+.. ..+-..++-.+.+-|.+|....+.
T Consensus 329 ~~~~~~~t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k---------------~~~~niiIE~i~iyflk~vqid~~ 393 (432)
T COG4109 329 KGDEYGVTVEVEPQMINSLGTISNGVFTELLTEVVQRVLRK---------------KKKRNIIIENITIYFLKPVQIDSV 393 (432)
T ss_pred hccccceEEEechhhccccccchHHHHHHHHHHHHHHHHHH---------------hcCCceEEEeeeeeeecceecccE
Confidence 34455566889999999999999999999999998766653 223346788899999999999999
Q ss_pred EEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEE
Q 019520 215 VNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLW 251 (340)
Q Consensus 215 V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~w 251 (340)
++|...+.+.||.+...+++|+. +|++++.|-...
T Consensus 394 l~I~prIl~~gR~~a~idvei~~--~~~ivaKAiv~~ 428 (432)
T COG4109 394 LEIYPRILEEGRKFAKIDVEIYH--DGQIVAKAIVTV 428 (432)
T ss_pred EEEeeeeeccccccceeEEEEee--Ccchhhhheeee
Confidence 99999999999999999999997 578887776543
No 35
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=94.59 E-value=1.2 Score=36.59 Aligned_cols=83 Identities=8% Similarity=-0.025 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEEC
Q 019520 159 ETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNA 238 (340)
Q Consensus 159 ~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~ 238 (340)
.-.++++.+++..+....+. . ...+..+.+.-.+++|.++...||.+++++++...+........+++.
T Consensus 48 ~l~iE~~aQ~~~~~~~~~~~---------~-~~~~~~~l~~~~~~kf~~pv~pgd~l~i~~~v~~~~~~~~~~~~~~~~- 116 (131)
T cd01288 48 VLIIEALAQAAGILGLKSLE---------D-FEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLRRGIGKFKGKAYV- 116 (131)
T ss_pred hHHHHHHHHHHHHHhhhccc---------c-cCCcEEEEeeecccEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEEE-
Confidence 34566777776655432210 0 123344555568999999999999999999999887666666677754
Q ss_pred CCCcEEEEEEEEEEE
Q 019520 239 KTGETLTRATSLWVM 253 (340)
Q Consensus 239 ~~Gevia~A~S~wVl 253 (340)
+|+++++|+...+.
T Consensus 117 -~g~~v~~~~~~~~~ 130 (131)
T cd01288 117 -DGKLVAEAELMFAI 130 (131)
T ss_pred -CCEEEEEEEEEEEE
Confidence 68999999887664
No 36
>PLN02647 acyl-CoA thioesterase
Probab=94.50 E-value=1.3 Score=45.36 Aligned_cols=115 Identities=10% Similarity=0.023 Sum_probs=81.0
Q ss_pred eEEEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEE
Q 019520 138 IFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNV 217 (340)
Q Consensus 138 vf~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V 217 (340)
.-+..+.+...|.+..|.++=+.+|+++.+++.-.+... ..+..-.+.=-.++|.+|...||.|.+
T Consensus 290 ~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~--------------a~~~~vt~svd~v~F~~PV~vGdil~l 355 (437)
T PLN02647 290 RLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAF--------------AGLRPYFLEVDHVDFLRPVDVGDFLRF 355 (437)
T ss_pred ceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHH--------------cCCceEEEEecceEecCccccCcEEEE
Confidence 344567789999999999999999999999886443321 223334444567899999999999998
Q ss_pred EEEEEEeC-----CcEEEEEEE--EEEC--CCCcEEEEEEEEEEEEEC-CCCcccCCCH
Q 019520 218 ETWVSASG-----KNGMRRDWL--IRNA--KTGETLTRATSLWVMMNK-LTRRLSKMPD 266 (340)
Q Consensus 218 ~Twv~~~g-----r~~~~R~f~--I~d~--~~Gevia~A~S~wVlvD~-~tRRpvrIP~ 266 (340)
+..+...+ +.++...-. +.+. .+++++.++..++|..|- ..++|.++|+
T Consensus 356 ~A~V~yt~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva~d~~~~g~p~~Vp~ 414 (437)
T PLN02647 356 KSCVLYTELENSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTVRPEAAMKNGFKIRN 414 (437)
T ss_pred EEEEEEEeEEecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEEeccccCCCCccCCe
Confidence 76665544 444443322 3332 245678899999999885 3678888775
No 37
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=94.49 E-value=0.32 Score=40.33 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=44.1
Q ss_pred EEEEeeEEEEcccCCCCCEEEEEEEEEEeCCc-EEEEEEEEEECCCCcEEEEEEEEE
Q 019520 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKN-GMRRDWLIRNAKTGETLTRATSLW 251 (340)
Q Consensus 196 WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~-~~~R~f~I~d~~~Gevia~A~S~w 251 (340)
..+.+++++|.+|...||+|+++.++...... ......++.|+ +|+++++++.+.
T Consensus 67 ~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~nq-~G~~v~~g~a~v 122 (123)
T cd03455 67 ARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWARNS-EGDHVMAGTATV 122 (123)
T ss_pred ceEEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEEcC-CCCEEEeEEEEE
Confidence 45567899999999999999999999875432 45567788885 899999988654
No 38
>KOG4366 consensus Predicted thioesterase [General function prediction only]
Probab=94.44 E-value=0.02 Score=51.91 Aligned_cols=102 Identities=13% Similarity=0.033 Sum_probs=80.3
Q ss_pred eecCCCCCCC-CcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEEEEEE
Q 019520 145 IRSYEIGADG-TASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSA 223 (340)
Q Consensus 145 VR~~D~Da~G-hV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~ 223 (340)
.-..|.|-.- |+||+.|++=+.-||.+|....|+. ..+...+..-|..-..+.|.|.++.-+...|.|.+..
T Consensus 57 cls~dlDtll~HmnNArYfrElDfAR~~~~~r~~l~-------~~lr~~~~~~v~~As~~ryrr~Irpfh~y~v~sRiI~ 129 (213)
T KOG4366|consen 57 CLSTDLDTLLSHMNNARYFRELDFARVNFYCRTGLY-------LMLRSKRGPYVQGASVFRYRREIRPFHPYSVSSRIIC 129 (213)
T ss_pred eecchHHHHHHHhhhhHHHHHhhHHHHHHHHHHhHH-------HHHHhcCCCeeechhhhhhhhhcCCCCccceeeEEEE
Confidence 3346666665 9999999999999999999998862 2355566666777777889999999999999999998
Q ss_pred eCCcEEE--EEEEEEECCCCcEEEEEEEEEEEEE
Q 019520 224 SGKNGMR--RDWLIRNAKTGETLTRATSLWVMMN 255 (340)
Q Consensus 224 ~gr~~~~--R~f~I~d~~~Gevia~A~S~wVlvD 255 (340)
.....++ -.|.+. .+|=+++-+.+..++.|
T Consensus 130 WDekaiyle~rFv~~--sd~fvcala~~kq~l~d 161 (213)
T KOG4366|consen 130 WDEKAIYLESRFVIL--SDGFVCALALTKQVLKD 161 (213)
T ss_pred Echhhhhhhhheeec--cCceEeehHHHHHHHhc
Confidence 8654433 335444 47999999999999998
No 39
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=94.43 E-value=0.26 Score=38.45 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=51.4
Q ss_pred cEEEEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 019520 194 LIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (340)
Q Consensus 194 l~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wV 252 (340)
..-+...+++.|.+++..++.+..+.++...|+....++-++++. +|++++.+.....
T Consensus 41 ~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~-~G~lva~~~~~~~ 98 (99)
T cd00556 41 SGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQR-DGKLVASATQSFL 98 (99)
T ss_pred CCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEECC-CCcEEEEEEEeEc
Confidence 345778999999999999999999999999999999999999985 7999999987653
No 40
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=94.19 E-value=0.86 Score=38.72 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=66.0
Q ss_pred eEEEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEE
Q 019520 138 IFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNV 217 (340)
Q Consensus 138 vf~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V 217 (340)
.....+..++.-.+..|.++-..++...+-+....+... + ..+..|++..++++|.+|.+- .|+.
T Consensus 30 ~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~------------l-~~~~~~~~k~~~i~f~kpa~g--~v~a 94 (132)
T PF14539_consen 30 RVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSN------------L-GDKYRVWDKSAEIDFLKPARG--DVTA 94 (132)
T ss_dssp EEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHH------------S--TTEEEEEEEEEEEE-S---S---EEE
T ss_pred EEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHh------------C-CCcEEEEEEeeEEEEEeccCC--cEEE
Confidence 445677888889999999999999999999987666532 1 237788899999999999653 4555
Q ss_pred EEEEEE--eC-CcEEEEEEEEEECCCCcEEEEEEEEEE
Q 019520 218 ETWVSA--SG-KNGMRRDWLIRNAKTGETLTRATSLWV 252 (340)
Q Consensus 218 ~Twv~~--~g-r~~~~R~f~I~d~~~Gevia~A~S~wV 252 (340)
+..++. .+ +........++|. +|+++++++.+|-
T Consensus 95 ~~~~~~e~~~~~~~~~~~v~i~D~-~G~~Va~~~~t~~ 131 (132)
T PF14539_consen 95 TAELTEEQIGERGELTVPVEITDA-DGEVVAEATITWY 131 (132)
T ss_dssp EEE-TCCHCCHEEEEEEEEEEEET-TC-EEEEEEEEEE
T ss_pred EEEcCHHHhCCCcEEEEEEEEEEC-CCCEEEEEEEEEE
Confidence 555543 33 4445566778895 8999999999984
No 41
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=94.15 E-value=0.62 Score=41.42 Aligned_cols=61 Identities=11% Similarity=-0.003 Sum_probs=47.4
Q ss_pred EEEeeEEEEcccCCCCCEEEEEEEEEEeC----CcEEEEEEEEEECCCCcEEEEEEEEEEEEECCC
Q 019520 197 VVTRMQVVVDRYPTWNDVVNVETWVSASG----KNGMRRDWLIRNAKTGETLTRATSLWVMMNKLT 258 (340)
Q Consensus 197 VV~r~~Ie~~r~p~~gD~V~V~Twv~~~g----r~~~~R~f~I~d~~~Gevia~A~S~wVlvD~~t 258 (340)
+-...+++|.+|.+.||+|++++.+.... +-......++.|+ +|++++++...++.-+..+
T Consensus 85 v~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~NQ-~Ge~V~~~~~~~~~~~~~~ 149 (166)
T PRK13691 85 VQVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTND-DGELVMEAYTTLMGQQGDN 149 (166)
T ss_pred eeeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEECC-CCCEEEEEEEEEEEecCCC
Confidence 44567889999999999999999998662 2245566778884 8999999998776665443
No 42
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=93.37 E-value=0.88 Score=36.97 Aligned_cols=56 Identities=16% Similarity=-0.072 Sum_probs=45.0
Q ss_pred cEEEEEeeEEEEcccCCCCCEEEEEEEEEEeCC----cEEEEEEEEEECCCCcEEEEEEEE
Q 019520 194 LIWVVTRMQVVVDRYPTWNDVVNVETWVSASGK----NGMRRDWLIRNAKTGETLTRATSL 250 (340)
Q Consensus 194 l~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr----~~~~R~f~I~d~~~Gevia~A~S~ 250 (340)
..+++...+++|.+|.+.||+|+++.++..... .......++.+. +|+++..+.+.
T Consensus 66 ~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~-~g~~v~~g~~~ 125 (127)
T cd03441 66 DGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARNQ-GGEVVLSGEAT 125 (127)
T ss_pred ccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEeC-CCCEEEEEEEE
Confidence 457888999999999999999999999998743 345566777885 78988887654
No 43
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=93.18 E-value=4.8 Score=34.25 Aligned_cols=59 Identities=8% Similarity=0.026 Sum_probs=46.5
Q ss_pred EEEEEe-eEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEE
Q 019520 195 IWVVTR-MQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMN 255 (340)
Q Consensus 195 ~WVV~r-~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlvD 255 (340)
..++.. -+++|.+|.+.||+|+++.++...++.....+.++.. +|+++++|....++-|
T Consensus 87 ~~~l~gi~~~kF~~pv~pGd~l~i~~~i~~~~~~~v~~~~~~~~--~g~~v~~~~~~~~~~~ 146 (147)
T PRK00006 87 LVYFAGIDKARFKRPVVPGDQLILEVELLKQRRGIWKFKGVATV--DGKLVAEAELMFAIRD 146 (147)
T ss_pred EEEEeeeeEEEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEEE--CCEEEEEEEEEEEEEc
Confidence 344444 4799999999999999999998876666666667764 7999999999887644
No 44
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=93.13 E-value=1.2 Score=37.63 Aligned_cols=54 Identities=17% Similarity=-0.016 Sum_probs=42.9
Q ss_pred EEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCC-CcEEEEEEEEE
Q 019520 197 VVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKT-GETLTRATSLW 251 (340)
Q Consensus 197 VV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~-Gevia~A~S~w 251 (340)
.+.+++++|.+|...||+|+++.++.+...-.....+++++. + |+++.++....
T Consensus 69 ~~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~nq-~~g~~V~~g~~~v 123 (126)
T cd03447 69 RVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARNE-ETGELVLRGEAEV 123 (126)
T ss_pred eEEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEEC-CCCCEEEEEEEEE
Confidence 345679999999999999999999988654455667788885 5 88888887643
No 45
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=93.03 E-value=1.3 Score=39.01 Aligned_cols=60 Identities=8% Similarity=0.097 Sum_probs=47.4
Q ss_pred EeeEEEEcccCCCCCEEEEEEEEEEe----CCcEEEEEEEEEECCCCcEEEEEEEEEEEEECCCC
Q 019520 199 TRMQVVVDRYPTWNDVVNVETWVSAS----GKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTR 259 (340)
Q Consensus 199 ~r~~Ie~~r~p~~gD~V~V~Twv~~~----gr~~~~R~f~I~d~~~Gevia~A~S~wVlvD~~tR 259 (340)
...+++|.+|.+.||+|+++..+... ++-.......+++. +|++++++.++.+.-..+.+
T Consensus 87 ~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~Nq-~Ge~V~~~~~~~~~r~~~~~ 150 (159)
T PRK13692 87 VDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNE-EGDVVQETYTTLAGRAGEDG 150 (159)
T ss_pred eeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEcC-CCCEEEEEEEEEEEecCCcC
Confidence 45789999999999999999999754 22345667788884 89999999998887765543
No 46
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=92.77 E-value=1.2 Score=37.13 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=41.5
Q ss_pred EEeeEEEEcccCCCCCEEEEEEEEEEe----CCcEEEEEEEEEECCCCcEEEEEEEE
Q 019520 198 VTRMQVVVDRYPTWNDVVNVETWVSAS----GKNGMRRDWLIRNAKTGETLTRATSL 250 (340)
Q Consensus 198 V~r~~Ie~~r~p~~gD~V~V~Twv~~~----gr~~~~R~f~I~d~~~Gevia~A~S~ 250 (340)
+.++.++|.+|.+.||+|+++.++... ++.......++++. +|+++.+++..
T Consensus 70 i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~nq-~g~~v~~g~a~ 125 (127)
T cd03453 70 VVSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATDQ-AGGKKVLGRAI 125 (127)
T ss_pred eEEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEEc-CCCEEEEEEEE
Confidence 357889999999999999999999764 22345667888885 89998888764
No 47
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=92.76 E-value=0.68 Score=39.03 Aligned_cols=51 Identities=16% Similarity=-0.001 Sum_probs=41.2
Q ss_pred eEEEEcccCCCCCEEEEEEEEEEeC-------CcEEEEEEEEEECCCCcEEEEEEEEEE
Q 019520 201 MQVVVDRYPTWNDVVNVETWVSASG-------KNGMRRDWLIRNAKTGETLTRATSLWV 252 (340)
Q Consensus 201 ~~Ie~~r~p~~gD~V~V~Twv~~~g-------r~~~~R~f~I~d~~~Gevia~A~S~wV 252 (340)
.+++|.+|...||+|++++++.+.. +-.......+.|. +|++++++..+.+
T Consensus 81 ~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq-~g~~v~~~~~~~~ 138 (140)
T cd03454 81 DELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQ-RGEVVLTFEATVL 138 (140)
T ss_pred eeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcC-CCCEEEEEEehhe
Confidence 4899999999999999999998763 2245667788885 8999999987654
No 48
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=92.64 E-value=4.7 Score=32.95 Aligned_cols=85 Identities=12% Similarity=-0.037 Sum_probs=62.2
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEE
Q 019520 154 GTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDW 233 (340)
Q Consensus 154 GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f 233 (340)
+.+--...++++-+++..++...+... . ........+.--+++|.++.+-||+++++.++...+......+.
T Consensus 42 p~lPg~~~iE~~aQ~~~~~~~~~~~~~-------~-~~~~~~~l~~~~~~kf~~~v~pgd~l~i~~~i~~~~~~~~~~~~ 113 (131)
T cd00493 42 PVMPGVLGIEAMAQAAAALAGLLGLGK-------G-NPPRLGYLAGVRKVKFRGPVLPGDTLTLEVELLKVRRGLGKFDG 113 (131)
T ss_pred CCCCcHHHHHHHHHHHHHHHHhccccc-------c-cCCcEEEEEEcceeEECCCcCCCCEEEEEEEEEEeeCCEEEEEE
Confidence 456677788899998888876543210 0 12233444555799999999999999999999987765566667
Q ss_pred EEEECCCCcEEEEEE
Q 019520 234 LIRNAKTGETLTRAT 248 (340)
Q Consensus 234 ~I~d~~~Gevia~A~ 248 (340)
.++. +|++++++.
T Consensus 114 ~~~~--~g~~v~~~~ 126 (131)
T cd00493 114 RAYV--DGKLVAEAE 126 (131)
T ss_pred EEEE--CCEEEEEEE
Confidence 7776 599999988
No 49
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=92.36 E-value=0.9 Score=38.08 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=40.3
Q ss_pred eEEEEcccCCCCCEEEEEEEEEEeCC------cEEEEEEEEEECCCCcEEEEEEEEEE
Q 019520 201 MQVVVDRYPTWNDVVNVETWVSASGK------NGMRRDWLIRNAKTGETLTRATSLWV 252 (340)
Q Consensus 201 ~~Ie~~r~p~~gD~V~V~Twv~~~gr------~~~~R~f~I~d~~~Gevia~A~S~wV 252 (340)
.+++|.+|.+.||+|+++.++..... ........++++ +|++++++.+..+
T Consensus 83 ~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq-~g~~v~~~~~~~l 139 (140)
T cd03446 83 DNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQ-RGEVVQSGEMSLL 139 (140)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcC-CCCEEEEEEEeee
Confidence 48999999999999999999987631 134456677784 8999999987654
No 50
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=91.38 E-value=1.2 Score=37.51 Aligned_cols=55 Identities=13% Similarity=-0.021 Sum_probs=41.9
Q ss_pred EEeeEEEEcccCCCCCEEEEEEEEEEeCC-------cEEEEEEEEEECCCCcEEEEEEEEEEE
Q 019520 198 VTRMQVVVDRYPTWNDVVNVETWVSASGK-------NGMRRDWLIRNAKTGETLTRATSLWVM 253 (340)
Q Consensus 198 V~r~~Ie~~r~p~~gD~V~V~Twv~~~gr-------~~~~R~f~I~d~~~Gevia~A~S~wVl 253 (340)
+.-.+++|.+|.+.||+|+++..+..... .......++.+. +|+++++++.+.++
T Consensus 81 ~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq-~g~~V~~~~~~~~~ 142 (146)
T cd03451 81 LGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQ-DGEPVLSFERTALV 142 (146)
T ss_pred cCccEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECC-CCCEEEEEEehhEE
Confidence 33348999999999999999999987632 244556677774 89999999976543
No 51
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=91.35 E-value=2.4 Score=38.22 Aligned_cols=59 Identities=10% Similarity=-0.065 Sum_probs=46.3
Q ss_pred CcEEEEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEE
Q 019520 193 NLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVM 253 (340)
Q Consensus 193 gl~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVl 253 (340)
+..-+....+++|.+|...||+|.++..+...++........+.. +|+++++|....+.
T Consensus 123 ~~~~~~~i~~irF~kPV~pGD~L~~ea~v~~~~~~~~~v~~~~~v--~g~~V~ege~~~~~ 181 (185)
T PRK04424 123 AELALTGVANIRFKRPVKLGERVVAKAEVVRKKGNKYIVEVKSYV--GDELVFRGKFIMYR 181 (185)
T ss_pred CcEEEEEeeeEEEccCCCCCCEEEEEEEEEEccCCEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 444555667999999999999999999999877655544555553 79999999987765
No 52
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=91.00 E-value=9.2 Score=32.66 Aligned_cols=99 Identities=13% Similarity=0.062 Sum_probs=67.7
Q ss_pred EEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEEE
Q 019520 141 QNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETW 220 (340)
Q Consensus 141 ~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~Tw 220 (340)
....++. +++..|.++=..++..+..+.+..+... + ... ..+..-|..+.+++|.+|.+- + +..++.
T Consensus 26 v~~pl~~-n~N~~G~~hGG~l~tlad~a~~~~~~~~-~--------~~~-~~~~~~vt~~~~i~yl~P~~~-~-~~a~~~ 92 (138)
T TIGR02447 26 LSAPLAA-NINHHGTMFGGSLYTLATLSGWGLLWLR-L--------QEL-GIDGDIVIADSHIRYLAPVTG-D-PVANCE 92 (138)
T ss_pred EEeECCC-CcCCCCceehhHHHHHHHHHHHHHHHHH-H--------HHh-CCCCcEEEEEeeeEEcCCcCC-C-eEEEEE
Confidence 4556666 4899999999999999965543322110 0 011 122356788999999999974 3 555555
Q ss_pred E-------------EEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 019520 221 V-------------SASGKNGMRRDWLIRNAKTGETLTRATSLWVMM 254 (340)
Q Consensus 221 v-------------~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlv 254 (340)
+ ..-||.....+-+|++ +|+++++++.+++.+
T Consensus 93 ~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~--~~~lvA~~~g~~~~~ 137 (138)
T TIGR02447 93 APDLESWEAFLATLQRGGKARVKLEAQISS--DGKLAATFSGEYVAL 137 (138)
T ss_pred cCCHHHHHHHHHHHHhCCceEEEEEEEEEE--CCEEEEEEEEEEEEe
Confidence 5 3446777667788886 689999999988875
No 53
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=90.42 E-value=9.7 Score=32.01 Aligned_cols=86 Identities=9% Similarity=-0.025 Sum_probs=57.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEe-eEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEE
Q 019520 156 ASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTR-MQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWL 234 (340)
Q Consensus 156 V~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r-~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~ 234 (340)
+--.-+++++-+++..++... . + .....+....+.. -+++|.++.+.||++++..++..........+.+
T Consensus 53 ~Pg~l~iE~~aQ~~~~~~~~~-~-----~---~~~~~~~~~~l~~~~~~kF~~~v~pGd~l~i~~~i~~~~~~~~~~~~~ 123 (140)
T TIGR01750 53 MPGVLIVEALAQAGGVLAILS-L-----G---GEIGKGKLVYFAGIDKAKFRRPVVPGDQLILHAEFLKKRRKIGKFKGE 123 (140)
T ss_pred ChHHHHHHHHHHHHHHHhecc-c-----c---ccCCCCcEEEEeecceeEECCccCCCCEEEEEEEEEEccCCEEEEEEE
Confidence 444456777777766544211 0 0 0011223344555 5999999999999999999998776555566667
Q ss_pred EEECCCCcEEEEEEEEEE
Q 019520 235 IRNAKTGETLTRATSLWV 252 (340)
Q Consensus 235 I~d~~~Gevia~A~S~wV 252 (340)
++. +|+++++|+...+
T Consensus 124 ~~~--~g~~va~~~~~~~ 139 (140)
T TIGR01750 124 ATV--DGKVVAEAEITFA 139 (140)
T ss_pred EEE--CCEEEEEEEEEEE
Confidence 754 7999999998764
No 54
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=90.02 E-value=1.5 Score=36.39 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=38.0
Q ss_pred cEEEEEeeEEEEcccCCCCCEEEEEEEEEEeC------Cc-EEEEEEEEEECCCCcEEEE
Q 019520 194 LIWVVTRMQVVVDRYPTWNDVVNVETWVSASG------KN-GMRRDWLIRNAKTGETLTR 246 (340)
Q Consensus 194 l~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~g------r~-~~~R~f~I~d~~~Gevia~ 246 (340)
..-+-...+++|++|++.||+|++++.+..+. +. ......+++|. +|+++++
T Consensus 73 ~~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~-~Ge~v~t 131 (132)
T PF13452_consen 73 TRLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQ-DGELVAT 131 (132)
T ss_dssp GGEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-C-TTEEEEE
T ss_pred hhEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECC-CCCEEEe
Confidence 44666789999999999999999999998762 12 23556778885 8999875
No 55
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=89.26 E-value=3.5 Score=38.06 Aligned_cols=57 Identities=16% Similarity=0.077 Sum_probs=47.8
Q ss_pred EEEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEE
Q 019520 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMN 255 (340)
Q Consensus 196 WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlvD 255 (340)
..+..++++|.++...| .+++++...+.||.+..+.-++.. +|+++++|...+.--+
T Consensus 34 ~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~q--~~~~~~~a~~~f~~~~ 90 (255)
T PF13622_consen 34 FDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELSQ--DGKVVATATASFGRPE 90 (255)
T ss_dssp SEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEEE--TTEEEEEEEEEEE--T
T ss_pred CceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEEE--CCcCEEEEEEEEccCc
Confidence 78899999999999999 999999999999999999988986 6888888888765554
No 56
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=88.96 E-value=4.2 Score=32.46 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=47.1
Q ss_pred EEEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEE
Q 019520 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLW 251 (340)
Q Consensus 196 WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~w 251 (340)
..+..+++.|.+++..+..+++++....-||++..+.-.+.. +|+++..+...+
T Consensus 39 ~~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~Q--~g~~~~~a~~sf 92 (94)
T cd03445 39 RVPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQ--NGKVIFTATASF 92 (94)
T ss_pred CCeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEEE--CCEEEEEEEEEE
Confidence 346789999999999999999999999999999999888875 689988887654
No 57
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=88.38 E-value=3.9 Score=42.20 Aligned_cols=66 Identities=18% Similarity=0.077 Sum_probs=49.6
Q ss_pred EEEEEeeEEEEcccCCCCCEEEEEEEEEEe--CCcEEEEEEEEEECCCCcEEEEEEEEEEEEECCCCcc
Q 019520 195 IWVVTRMQVVVDRYPTWNDVVNVETWVSAS--GKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRL 261 (340)
Q Consensus 195 ~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~--gr~~~~R~f~I~d~~~Gevia~A~S~wVlvD~~tRRp 261 (340)
+.+....+++|.+|.+.||+|+++.++... ++.......++++. +|+++++++.++++-...-.+|
T Consensus 82 ~~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~nq-~G~~V~~g~~~~l~~~~~~~~~ 149 (466)
T PRK08190 82 GTIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCTNQ-DGEVVITGTAEVIAPTEKVRRP 149 (466)
T ss_pred ceEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEEeC-CCCEEEEEEEEeeccccccccc
Confidence 345567899999999999999999999864 33345566777884 8999999988776554443334
No 58
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=88.28 E-value=2.9 Score=35.69 Aligned_cols=51 Identities=16% Similarity=0.024 Sum_probs=40.6
Q ss_pred eEEEEcccCCCCCEEEEEEEEEEeC--C----cEEEEEEEEEECCCCcEEEEEEEEEE
Q 019520 201 MQVVVDRYPTWNDVVNVETWVSASG--K----NGMRRDWLIRNAKTGETLTRATSLWV 252 (340)
Q Consensus 201 ~~Ie~~r~p~~gD~V~V~Twv~~~g--r----~~~~R~f~I~d~~~Gevia~A~S~wV 252 (340)
.+++|.+|.+.||+|+++..+.... + ..+....++.+. +|++++++.....
T Consensus 81 ~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq-~g~~V~~~~~~~~ 137 (142)
T cd03452 81 ENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQ-NGELVASYDILTL 137 (142)
T ss_pred ceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEec-CCCEEEEEEehHe
Confidence 4999999999999999999998762 1 135567778884 8999999886544
No 59
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=87.27 E-value=0.24 Score=35.53 Aligned_cols=29 Identities=21% Similarity=0.007 Sum_probs=25.7
Q ss_pred cCCCCCCCCCccCCcchHHHHHHHHHhcc
Q 019520 304 GLTPRWSDLDVNQHVNNVKYIGWILEVDF 332 (340)
Q Consensus 304 ~~tVr~SDLD~NgHVNNv~Yi~wild~lP 332 (340)
.+++++.|+|.++|+|+..|+.|+.++.-
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (100)
T cd03440 4 RLTVTPEDIDGGGIVHGGLLLALADEAAG 32 (100)
T ss_pred EEEeCHHHcCcCCccchHHHHHHHHHHHH
Confidence 46789999999999999999999987764
No 60
>PLN02864 enoyl-CoA hydratase
Probab=86.58 E-value=3.8 Score=40.01 Aligned_cols=60 Identities=10% Similarity=0.020 Sum_probs=48.0
Q ss_pred EEEEeeEEEEcccCCCCCEEEEEEEEEEeCCc----EEEEEEEEEECCCCcEEEEEEEEEEEEE
Q 019520 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKN----GMRRDWLIRNAKTGETLTRATSLWVMMN 255 (340)
Q Consensus 196 WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~----~~~R~f~I~d~~~Gevia~A~S~wVlvD 255 (340)
.|=.+..|+++||+..++.+++++++..+... ....+..+.+..+|+++++..++.++-.
T Consensus 94 lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~Rg 157 (310)
T PLN02864 94 LLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLRG 157 (310)
T ss_pred eeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEeC
Confidence 45568899999999999999999999987222 2456677778558999999998888765
No 61
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=83.55 E-value=0.8 Score=36.92 Aligned_cols=30 Identities=10% Similarity=0.031 Sum_probs=26.6
Q ss_pred eccCCCCCCCCCccCCcchHHHHHHHHHhc
Q 019520 302 RRGLTPRWSDLDVNQHVNNVKYIGWILEVD 331 (340)
Q Consensus 302 ~~~~tVr~SDLD~NgHVNNv~Yi~wild~l 331 (340)
...++|++.|+|..||||+..|+.|+.++.
T Consensus 9 ~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~ 38 (123)
T cd03442 9 STRELVLPEDTNHHGTIFGGWLLEWMDELA 38 (123)
T ss_pred EEEEEeCCcccCcCCcEeHHHHHHHHHHHH
Confidence 346889999999999999999999997764
No 62
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=77.21 E-value=11 Score=35.28 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=48.2
Q ss_pred EEEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 019520 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (340)
Q Consensus 196 WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wV 252 (340)
..+..+++.|.+++..+..|++++...+-||++..|.-+++. +|++|+++...+.
T Consensus 44 ~~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~Q--~g~~~~~a~asf~ 98 (271)
T TIGR00189 44 FIPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAVQ--HGKTIFTLQASFQ 98 (271)
T ss_pred CCcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEEE--CCEEEEEEEEEcc
Confidence 345689999999999999999999999999999999888876 6899998887665
No 63
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=74.71 E-value=50 Score=27.69 Aligned_cols=102 Identities=16% Similarity=0.064 Sum_probs=63.2
Q ss_pred EEEEEEeecCCCCCCC------CcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCC
Q 019520 139 FRQNFSIRSYEIGADG------TASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWN 212 (340)
Q Consensus 139 f~~~~~VR~~D~Da~G------hV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~g 212 (340)
-.-...|...|-=..| .+--.-+++.+.+++..++...+... +.+ ..........--+++|.++..-|
T Consensus 27 ~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~kF~~~v~Pg 100 (138)
T PF07977_consen 27 IVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAE-GTG-----EARKVPFLAGIRNVKFRGPVYPG 100 (138)
T ss_dssp EEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSS-SCC-----CCCEEEEEEEEEEEEE-S-B-TT
T ss_pred EEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccc-cCC-----CcceEEEeccccEEEECccEeCC
Confidence 4445556555543334 34444567788777777776554310 000 01134566777889999999999
Q ss_pred C-EEEEEEEEEE---eCCcEEEEEEEEEECCCCcEEEEEE
Q 019520 213 D-VVNVETWVSA---SGKNGMRRDWLIRNAKTGETLTRAT 248 (340)
Q Consensus 213 D-~V~V~Twv~~---~gr~~~~R~f~I~d~~~Gevia~A~ 248 (340)
| .++++..+.+ ........+..++- +|+.+++|.
T Consensus 101 ~~~l~~~v~i~~~~~~~~~~~~~~~~~~v--dg~~v~~~~ 138 (138)
T PF07977_consen 101 DKTLRIEVEIKKIRRREGGMAIFDGTAYV--DGELVAEAE 138 (138)
T ss_dssp E-EEEEEEEEEEEEEEETTEEEEEEEEEE--TTEEEEEEE
T ss_pred CcEEEEEEEEEEeecccCCEEEEEEEEEE--CCEEEEEEC
Confidence 9 9999999998 56666667777876 799998874
No 64
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=71.83 E-value=47 Score=34.53 Aligned_cols=58 Identities=7% Similarity=-0.064 Sum_probs=43.1
Q ss_pred EEEEe-eEEEEcccCCCCCEEEEEEEEEE-eCCcEEEEEEEEEECCCCcEEEEEEEEEEEEE
Q 019520 196 WVVTR-MQVVVDRYPTWNDVVNVETWVSA-SGKNGMRRDWLIRNAKTGETLTRATSLWVMMN 255 (340)
Q Consensus 196 WVV~r-~~Ie~~r~p~~gD~V~V~Twv~~-~gr~~~~R~f~I~d~~~Gevia~A~S~wVlvD 255 (340)
..+.. -+++|.+|.+.||++++++.+.. ..+.....+-.++. +|+++++|....++.+
T Consensus 402 g~LlgI~kvKF~~PV~PGDtL~I~veI~~~~~~giv~f~g~~~v--dGelVaeael~~~v~~ 461 (464)
T PRK13188 402 TYFMKIDKVKFRQKVVPGDTLIFKVELLSPIRRGICQMQGKAYV--NGKLVCEAELMAQIVK 461 (464)
T ss_pred EEEEeccEEEEcCCCCCCCEEEEEEEEEEEecCCEEEEEEEEEE--CCEEEEEEEEEEEEec
Confidence 44445 49999999999999999999876 33333344555663 7999999998887653
No 65
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=70.12 E-value=63 Score=26.89 Aligned_cols=88 Identities=10% Similarity=0.202 Sum_probs=58.3
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEEEEEEeCC-----c
Q 019520 153 DGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGK-----N 227 (340)
Q Consensus 153 ~GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr-----~ 227 (340)
.+|+..--+++-+-++......... +. ..+..+++..+.++|.++..+.-.+.|+..+..... .
T Consensus 40 ~dh~~gmll~Ea~RQa~~~~~h~~~------~v-----p~~~~~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~~ 108 (132)
T PF03756_consen 40 GDHVPGMLLLEAARQAGIALAHRFY------GV-----PLDHQFVLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRPR 108 (132)
T ss_pred CCccChHHHHHHHHHHHHHhhcccc------CC-----CCCceEEEEEEEEEEccccccCCCEEEEEEEEeccccCCccc
Confidence 4466665555555555544333211 11 234568999999999999888888888887775332 2
Q ss_pred EEEEEEEEEECCCCcEEEEEEEEEEE
Q 019520 228 GMRRDWLIRNAKTGETLTRATSLWVM 253 (340)
Q Consensus 228 ~~~R~f~I~d~~~Gevia~A~S~wVl 253 (340)
.+.....+.. +|+++++++..+-|
T Consensus 109 ~~~~~v~~~q--~g~~~a~~~~~~tc 132 (132)
T PF03756_consen 109 GLRFRVTVSQ--GGRVVATASMTFTC 132 (132)
T ss_pred eEEEEEEEEE--CCEEEEEEEEEEEC
Confidence 4555666775 79999999987753
No 66
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=69.02 E-value=29 Score=28.96 Aligned_cols=48 Identities=8% Similarity=0.102 Sum_probs=33.0
Q ss_pred EEEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEE
Q 019520 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRAT 248 (340)
Q Consensus 196 WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~ 248 (340)
-.+..+.++|.+|...||+|+++.|.. ++ ... +++...++|+++.++.
T Consensus 70 ~~~~~~~~rF~~PV~~gDtl~~~~~~~--~~-~v~--~~~~~~~~g~~v~~g~ 117 (122)
T cd03448 70 ARFKAIKVRFSSPVFPGETLRTEMWKE--GN-RVI--FQTKVVERDVVVLSNG 117 (122)
T ss_pred ceeEEEEEEEcCCccCCCEEEEEEEEe--CC-EEE--EEEEEccCCcEEEECC
Confidence 456678999999999999999999854 33 232 3343323677665554
No 67
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=68.74 E-value=72 Score=27.05 Aligned_cols=88 Identities=7% Similarity=-0.112 Sum_probs=58.7
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCC-CCEEEEEEEEEEeCC-cEEEE
Q 019520 154 GTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTW-NDVVNVETWVSASGK-NGMRR 231 (340)
Q Consensus 154 GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~-gD~V~V~Twv~~~gr-~~~~R 231 (340)
+.+--..+++++-++...+.-.... ..-.+..++..+.=-+++|+++..- ||.+.++.......+ .....
T Consensus 45 ~~~P~~l~iE~mAQa~a~~~g~~~~--------~~~~~~~~g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~~~~~~~~ 116 (138)
T cd01289 45 GRLPAWVGIEYMAQAIAAHGGLLAR--------QQGNPPRPGFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGDSGLGVF 116 (138)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHH--------hcCCCCCcEEEEEEEEEEEEcceeCCCCeeEEEeeeeeeCCCcEEEE
Confidence 6788888999999987666421110 0001223455555568899998655 999999998877653 45555
Q ss_pred EEEEEECCCCcEEEEEEEEE
Q 019520 232 DWLIRNAKTGETLTRATSLW 251 (340)
Q Consensus 232 ~f~I~d~~~Gevia~A~S~w 251 (340)
+-.++. +|+++++|+...
T Consensus 117 ~~~~~v--~~~~va~a~l~~ 134 (138)
T cd01289 117 ECTIED--QGGVLASGRLNV 134 (138)
T ss_pred EEEEEE--CCEEEEEEEEEE
Confidence 566664 689999998653
No 68
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=67.98 E-value=35 Score=27.55 Aligned_cols=56 Identities=13% Similarity=-0.028 Sum_probs=45.6
Q ss_pred EEEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 019520 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (340)
Q Consensus 196 WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wV 252 (340)
-.-..+.|.|++++...|=+..+.+....+.-+..-.=+|+++ +|+++|.+....+
T Consensus 48 ~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~~-~G~LvAs~~Q~~l 103 (104)
T cd03444 48 SASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFTR-DGELVASVAQEGL 103 (104)
T ss_pred eEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEECC-CCCEEEEEEEeee
Confidence 4566788999999998898888988888876666666789996 8999999877643
No 69
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=65.57 E-value=39 Score=29.51 Aligned_cols=59 Identities=12% Similarity=-0.058 Sum_probs=42.6
Q ss_pred EEEEEeeEEEEcccCCCCCEEEEEEEEEEeC--C--cEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 019520 195 IWVVTRMQVVVDRYPTWNDVVNVETWVSASG--K--NGMRRDWLIRNAKTGETLTRATSLWVMM 254 (340)
Q Consensus 195 ~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~g--r--~~~~R~f~I~d~~~Gevia~A~S~wVlv 254 (340)
+-.+.-..++|.+|.+.||+|..++++.... + -......+..+ +.|+....+...+++.
T Consensus 93 ~~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~~-~~g~~v~~~~~~~~~~ 155 (159)
T COG2030 93 GANLGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETVN-QEGELVLTLEATVLVL 155 (159)
T ss_pred eeeccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEEc-cCCcEEEEEEEeEeEe
Confidence 4456678899999999999999999998652 1 11222345556 3788888888777654
No 70
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=64.64 E-value=34 Score=32.87 Aligned_cols=55 Identities=11% Similarity=0.007 Sum_probs=48.7
Q ss_pred EEEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 019520 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (340)
Q Consensus 196 WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wV 252 (340)
-++..+++.|.++...+..|+.++....-||++..|.-..+. +|++|..+...+-
T Consensus 55 ~~~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGRSfstr~V~a~Q--~g~~if~~~~sF~ 109 (286)
T PRK10526 55 RLVHSFHSYFLRPGDSQKPIIYDVETLRDGNSFSARRVAAIQ--NGKPIFYMTASFQ 109 (286)
T ss_pred CCceEEEEEcCCCCCCCCCEEEEEEEEeCCCceEeEEEEEEE--CCEEEEEEEEEec
Confidence 477899999999999999999999999999999999877775 7899988877654
No 71
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=61.87 E-value=1.1e+02 Score=26.82 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=46.7
Q ss_pred cEEEEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEC
Q 019520 194 LIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNK 256 (340)
Q Consensus 194 l~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlvD~ 256 (340)
+...+.=-+++|+++..-||.+.++......++..+........ -+|+++++|+...+.++.
T Consensus 85 ~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~~~~a~-Vdg~~v~~a~~~~~~~~~ 146 (147)
T COG0764 85 LGYFLGIDNAKFKRPVLPGDQLELEVKLLKSRRLGIGKAKGVAT-VDGKVVAEAELLFAGVEK 146 (147)
T ss_pred EEEEEEecceeecCccCCCCEEEEEEEEEEecccceEEEEEEEE-ECCEEEEEEEEEEEEeec
Confidence 66667777899999999999999999998887443333222332 279999999988887653
No 72
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=60.25 E-value=19 Score=29.57 Aligned_cols=34 Identities=15% Similarity=-0.016 Sum_probs=27.2
Q ss_pred cEEEEEeeEEEEcccCCCCCEEEEEEEEEEeCCc
Q 019520 194 LIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKN 227 (340)
Q Consensus 194 l~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~ 227 (340)
....+.+++++|.+|...||+|.++.++.+....
T Consensus 74 ~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~~~ 107 (122)
T PF01575_consen 74 PPARLGRFNVRFRAPVFPGDTLTAEVEVTEKREG 107 (122)
T ss_dssp ECEEEEEEEEEESS--BTTEEEEEEEEEEEEEEE
T ss_pred cceEEEEEEEEEeccccCCCEEEEEEEEEEEEEc
Confidence 3578889999999999999999999999875433
No 73
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=58.56 E-value=1e+02 Score=26.67 Aligned_cols=29 Identities=7% Similarity=-0.274 Sum_probs=24.6
Q ss_pred EEEEeeEEEEcccCCCCCEEEEEEEEEEe
Q 019520 196 WVVTRMQVVVDRYPTWNDVVNVETWVSAS 224 (340)
Q Consensus 196 WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~ 224 (340)
..+...+++|.+|.+.||+|+++..+...
T Consensus 85 ~~~g~~~~rF~~PV~~GDtl~~~~~V~~~ 113 (149)
T cd03450 85 VNYGLDKVRFPAPVPVGSRVRGRFTLLSV 113 (149)
T ss_pred EEeeccEEEeCcceeCCcEEEEEEEEEEE
Confidence 44456689999999999999999998865
No 74
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=54.18 E-value=2.2e+02 Score=27.83 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=85.1
Q ss_pred HHHHHHhhhhhhhccCCCCCCCccccCcccCccccCCeeEEEEEEeecCCCCCCCCcCHHHHHHHHHHHHHHHHHH--cC
Q 019520 100 TTIFLAAEKQWMMLDWKPRRSDMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMT--AG 177 (340)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vf~~~~~VR~~D~Da~GhV~~~~yl~ylqeAa~~h~~~--lG 177 (340)
...+..+|+.|+ -|+=-..+|+.. +...=.+.+-||...-=++-..-+..++-|+.+.-.-.... .|
T Consensus 148 ~~~~~~~~~pie------~R~~~~~~~~~~-----~k~~~~~~vWira~~~~pdd~~~~~~lLay~SD~~ll~tal~~Hg 216 (289)
T COG1946 148 VRAKFELERPIE------IRPVNLTNPFSG-----DKSSPQQQVWIRARGELPDDPRLHQALLAYLSDFTLLDTALQPHG 216 (289)
T ss_pred hhhhhcccccee------EEecccCCcccc-----ccCCcceeEEEEcCCCCCCCHHHHHHHHHHhccchhhhhhhccCC
Confidence 344445566654 233334556644 22223456888887777777777788888888775333221 12
Q ss_pred CCCcCCCChHHHhhCCcEEEEEeeEEEEcccCCCCCEEEEEEEEEEe-CCcEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 019520 178 LLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSAS-GKNGMRRDWLIRNAKTGETLTRATSLWVMM 254 (340)
Q Consensus 178 l~~~Gfg~~~el~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~-gr~~~~R~f~I~d~~~Gevia~A~S~wVlv 254 (340)
+ + +...++.-+=....+.|+||.+.+|=+.-.+..... +...+.|. .+++ ++|+++|......++-
T Consensus 217 ~---~------~~~~~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A~~~rgl~~G-~lf~-r~G~LiA~~~QEG~~r 283 (289)
T COG1946 217 L---G------FLTPGIQVASLDHSMWFHRPFRLDDWLLYAQESPSASGGRGLVRG-QLFD-RDGQLIASVVQEGLIR 283 (289)
T ss_pred C---c------cccCcceEeeccceEEEeccccCCCEEEEEeeCCcccCCcceeee-EEEc-CCCCEEEEEeeeEEEe
Confidence 1 1 124556666678889999999999988877777665 34445553 5777 4899999988777664
No 75
>KOG4366 consensus Predicted thioesterase [General function prediction only]
Probab=51.73 E-value=3.8 Score=37.43 Aligned_cols=17 Identities=41% Similarity=0.643 Sum_probs=15.3
Q ss_pred CCCCCccC-CcchHHHHH
Q 019520 309 WSDLDVNQ-HVNNVKYIG 325 (340)
Q Consensus 309 ~SDLD~Ng-HVNNv~Yi~ 325 (340)
-+|+|.-- |+||++|++
T Consensus 59 s~dlDtll~HmnNArYfr 76 (213)
T KOG4366|consen 59 STDLDTLLSHMNNARYFR 76 (213)
T ss_pred cchHHHHHHHhhhhHHHH
Confidence 39999988 999999986
No 76
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=51.44 E-value=1.3e+02 Score=27.56 Aligned_cols=54 Identities=9% Similarity=0.119 Sum_probs=40.4
Q ss_pred EEeeEEEEcccC-CCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 019520 198 VTRMQVVVDRYP-TWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (340)
Q Consensus 198 V~r~~Ie~~r~p-~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wV 252 (340)
-..+.|.|++.| .-+|-+.+++.....+.-.+.-+-+|+|+ +|+++|.+....+
T Consensus 200 tld~ti~f~~~p~~~~~Wl~~~~~~~~~~~Gr~~~~~~l~d~-~G~lvA~~~Q~~l 254 (255)
T PF13622_consen 200 TLDHTIHFHRLPFDGDEWLLLEARSPRAGNGRALMEGRLWDE-DGRLVASSRQEAL 254 (255)
T ss_dssp EEEEEEEECSHCCTTTS-EEEEEEEEEEETTEEEEEEEEEET-TS-EEEEEEEEEE
T ss_pred cceeEEEEEeCCccCCceEEEEEEEeEeCCCEEEEEEEEECC-CCCEEEEEEEEee
Confidence 677888875544 45788999998888776666677889996 8999999987654
No 77
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=50.99 E-value=1.7e+02 Score=25.48 Aligned_cols=92 Identities=11% Similarity=-0.058 Sum_probs=59.8
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHcCCCCcCCCChHHHhh-CCcEEEEEeeEEEEcccCCCCC-EEEEEEEEEEeCC----c
Q 019520 154 GTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAK-KNLIWVVTRMQVVVDRYPTWND-VVNVETWVSASGK----N 227 (340)
Q Consensus 154 GhV~~~~yl~ylqeAa~~h~~~lGl~~~Gfg~~~el~~-~gl~WVV~r~~Ie~~r~p~~gD-~V~V~Twv~~~gr----~ 227 (340)
..+--.-.++.+-++...++-..+... .-.. ........--.++|+++..-|| ++++++.+.+.++ .
T Consensus 50 pvmPG~L~iEamaQ~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~~ 122 (150)
T cd01287 50 PVMPGSLGLEAMIQLLQFYLIWLGLGT-------GVDNPRFQGAPGGPGEWKYRGQITPHNKKVTYEVHIKEVGRDGPRP 122 (150)
T ss_pred CcCchHHHHHHHHHHHHHHHhhccccc-------ccCcccceeEeccceEEEECccCcCCCEEEEEEEEEEEEEccCCcc
Confidence 334445567777777665554333210 0001 1234445556799999999999 8999999998863 4
Q ss_pred EEEEEEEEEECCCCcEEEEEEEEEEEE
Q 019520 228 GMRRDWLIRNAKTGETLTRATSLWVMM 254 (340)
Q Consensus 228 ~~~R~f~I~d~~~Gevia~A~S~wVlv 254 (340)
...-+-.++- +|+++++|...-|.+
T Consensus 123 ~~~~~~~~~v--dg~~v~~a~~~~~~~ 147 (150)
T cd01287 123 YIIADASLWV--DGLRIYEAKDIAVRL 147 (150)
T ss_pred EEEEEEEEEE--CCEEEEEEEccEEEe
Confidence 5555556665 799999998776654
No 78
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=48.31 E-value=1.1e+02 Score=28.59 Aligned_cols=55 Identities=7% Similarity=-0.097 Sum_probs=42.0
Q ss_pred EEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 019520 197 VVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (340)
Q Consensus 197 VV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wV 252 (340)
.-..+.|.|+++...+|=+..+++....+.-+..-+=+|+|+ +|+++|.+...-+
T Consensus 215 aSldhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~d~-~G~lvAs~~Qe~l 269 (271)
T TIGR00189 215 ASLDHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIFTR-DGVLIASTVQEGL 269 (271)
T ss_pred EeeeeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEECC-CCCEEEEEEeeee
Confidence 456788899998788998988888886654444444689995 9999999887654
No 79
>PLN02864 enoyl-CoA hydratase
Probab=48.27 E-value=86 Score=30.61 Aligned_cols=51 Identities=8% Similarity=0.004 Sum_probs=35.8
Q ss_pred EEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 019520 197 VVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (340)
Q Consensus 197 VV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wV 252 (340)
.+.+++++|.+|...||+|.++.|.. ++ ....+..+ + ++|+++..|.....
T Consensus 254 ~~~~~~~rF~~PV~pGdtl~~~~~~~--~~-~v~~~~~~-~-~~g~~vl~G~a~~~ 304 (310)
T PLN02864 254 AVKTISGRFLLHVYPGETLVTEMWLE--GL-RVIYQTKV-K-ERNKAVLSGYVDLR 304 (310)
T ss_pred eEEEEEEEEcCCccCCCEEEEEEEeC--CC-EEEEEEEE-e-cCCeEEEEEEEEEe
Confidence 45678999999999999999999864 32 23222333 3 47888888766543
No 80
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=47.62 E-value=59 Score=35.19 Aligned_cols=50 Identities=14% Similarity=-0.011 Sum_probs=38.9
Q ss_pred eEEEEcccCCCCCEEEEEEEEEEeC-----Cc-EEEEEEEEEECCCCcEEEEEEEEE
Q 019520 201 MQVVVDRYPTWNDVVNVETWVSASG-----KN-GMRRDWLIRNAKTGETLTRATSLW 251 (340)
Q Consensus 201 ~~Ie~~r~p~~gD~V~V~Twv~~~g-----r~-~~~R~f~I~d~~~Gevia~A~S~w 251 (340)
.+++|.+|.+.||+|+++..+.... +. ....+..+++. +|+++.++....
T Consensus 604 ~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~nq-~G~~Vl~~~~~~ 659 (663)
T TIGR02278 604 ENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVNQ-NGEPVATYDVLT 659 (663)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEcC-CCCEEEEEEEHH
Confidence 4899999999999999999998652 11 34566778884 899988887644
No 81
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=47.43 E-value=63 Score=34.97 Aligned_cols=49 Identities=16% Similarity=0.054 Sum_probs=38.6
Q ss_pred EEEEcccCCCCCEEEEEEEEEEeC-----C-cEEEEEEEEEECCCCcEEEEEEEEE
Q 019520 202 QVVVDRYPTWNDVVNVETWVSASG-----K-NGMRRDWLIRNAKTGETLTRATSLW 251 (340)
Q Consensus 202 ~Ie~~r~p~~gD~V~V~Twv~~~g-----r-~~~~R~f~I~d~~~Gevia~A~S~w 251 (340)
+++|.+|.+.||+|+++..+.... + ........+.+. +|+++.++....
T Consensus 617 ~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq-~G~~V~~~~~~~ 671 (675)
T PRK11563 617 NLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTNQ-DGELVATYDILT 671 (675)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEEC-CCCEEEEEEEHH
Confidence 799999999999999999998762 1 135666778884 899988887643
No 82
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=46.49 E-value=1.9e+02 Score=24.71 Aligned_cols=52 Identities=12% Similarity=0.007 Sum_probs=35.4
Q ss_pred EeeEEEEcccCCCC-C----EEEEEEEEEEe--CCcEEEEEEEEEECCCCcEEEEEEEEE
Q 019520 199 TRMQVVVDRYPTWN-D----VVNVETWVSAS--GKNGMRRDWLIRNAKTGETLTRATSLW 251 (340)
Q Consensus 199 ~r~~Ie~~r~p~~g-D----~V~V~Twv~~~--gr~~~~R~f~I~d~~~Gevia~A~S~w 251 (340)
.++.++|.+|...| | +++++..+... ++........+.+. +++++++|..+.
T Consensus 81 ~~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~ 139 (142)
T PRK13693 81 TEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATTG-GKKIFGRAIASA 139 (142)
T ss_pred EEEEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEEEEEEC-CcEEEEEEEEEE
Confidence 47899999999874 3 88888888865 33345556666653 555666666543
No 83
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=41.47 E-value=1.8e+02 Score=25.08 Aligned_cols=53 Identities=8% Similarity=-0.139 Sum_probs=35.6
Q ss_pred EEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEE-ECCCCcEEEEEEEEE
Q 019520 198 VTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIR-NAKTGETLTRATSLW 251 (340)
Q Consensus 198 V~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~-d~~~Gevia~A~S~w 251 (340)
=....|=|+|+.+.+|-+.-.+........+..++=+++ + ++|+++|.+....
T Consensus 77 SlDHs~wFHrpfr~ddWlLY~~~sp~A~~~Rgl~~G~~f~~-q~G~Lvas~~QEG 130 (131)
T PF02551_consen 77 SLDHSMWFHRPFRADDWLLYAIESPSASGGRGLVRGRFFDT-QDGELVASVVQEG 130 (131)
T ss_dssp EEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEE-CTTEEEEEEEEEE
T ss_pred ecceeEEEcCCCCCCCCEEEEEEcCccccCcccccCceEec-CCCCEEEEEecCC
Confidence 667888899999999988888887665444443445666 5 4899999977654
No 84
>PLN02868 acyl-CoA thioesterase family protein
Probab=38.83 E-value=1.1e+02 Score=30.66 Aligned_cols=55 Identities=11% Similarity=-0.055 Sum_probs=46.1
Q ss_pred EEEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 019520 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (340)
Q Consensus 196 WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wV 252 (340)
..+..+++.|.++...+..|++++...+-||++..|.-..+. +|++++++...+.
T Consensus 181 ~~~~s~~~~Fl~~~~~~~pv~~~V~~lr~Grs~~~r~v~~~Q--~g~~~~~~~~sf~ 235 (413)
T PLN02868 181 KLVHSLHAYFLLVGDINLPIIYQVERIRDGHNFATRRVDAIQ--KGKVIFTLFASFQ 235 (413)
T ss_pred CCceEeeeeecCCCCCCCCEEEEEEEEcCCCceEeeEEEEEE--CCeeEEEEeeccc
Confidence 346788999999988888899999999999999999888875 6888887776544
No 85
>PF11456 DUF3019: Protein of unknown function (DUF3019); InterPro: IPR021559 This is a bacterial family of uncharacterised proteins.
Probab=33.11 E-value=1.2e+02 Score=24.81 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=27.0
Q ss_pred EEEEEEECCCCcEEEEEEEEEEEEECCCCcccCCC
Q 019520 231 RDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMP 265 (340)
Q Consensus 231 R~f~I~d~~~Gevia~A~S~wVlvD~~tRRpvrIP 265 (340)
-.|.++|.+++.++|.+......+..++||-.+.|
T Consensus 65 ~~f~L~~~~~~~~la~~~v~V~~~~~k~Rrr~r~p 99 (102)
T PF11456_consen 65 TQFSLRDSDTGQPLAQVKVKVTWVSPKVRRRRRNP 99 (102)
T ss_pred eEEEEEeCCCCcEEEEEEEEEEEeccCcCCccCCC
Confidence 35888888788889988887777767777766654
No 86
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=30.21 E-value=2.4e+02 Score=27.03 Aligned_cols=60 Identities=8% Similarity=-0.092 Sum_probs=44.9
Q ss_pred cEEEEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 019520 194 LIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMM 254 (340)
Q Consensus 194 l~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~wVlv 254 (340)
..-.-..+.|.|+++.+.+|=+..+++....+.-+..-.=.|++. +|+++|.+....++-
T Consensus 224 ~~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~~~-~G~LvAs~~Qegl~r 283 (286)
T PRK10526 224 MQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQ-DGVLVASTVQEGVMR 283 (286)
T ss_pred ceEEeeeEeEEEeCCCCCCceEEEEEECCcccCCceEEEEEEECC-CCCEEEEEEeeEEEE
Confidence 334567788999999999998988888886544333333478885 999999998876653
No 87
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=27.87 E-value=3.7e+02 Score=24.75 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=41.1
Q ss_pred cEEEEEe-eEEEEcc-cCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEE
Q 019520 194 LIWVVTR-MQVVVDR-YPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSL 250 (340)
Q Consensus 194 l~WVV~r-~~Ie~~r-~p~~gD~V~V~Twv~~~gr~~~~R~f~I~d~~~Gevia~A~S~ 250 (340)
..|+-.. -++.+.+ ++..++.+.+.+.....+...+..+..++|+ +|+++++..-.
T Consensus 227 ~~~lP~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~v~d~-~G~~~~~~~gl 284 (295)
T PF14765_consen 227 RVFLPVSIERIRIFRAPPPPGDRLYVYARLVKSDDDTITGDVTVFDE-DGRVVAELEGL 284 (295)
T ss_dssp SEEEEEEEEEEEESSS--SSTSEEEEEEEEESTTTTEEEEEEEEEET-TSBEEEEEEEE
T ss_pred CEEcccEeCEEEEEeccCCCCCEEEEEEEEecccceEEEEEEEEECC-CCCEEEEEccE
Confidence 3344333 4566663 6688999999999977777788889999995 89999887753
No 88
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=23.20 E-value=4.7e+02 Score=22.29 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=57.3
Q ss_pred hhCCcEEEEEeeEEEEcccCCCCCEEEEEEEEEEeCCcEEEE-------EEEEEECCCCcEEEEEEEEEEEEECCCCccc
Q 019520 190 AKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRR-------DWLIRNAKTGETLTRATSLWVMMNKLTRRLS 262 (340)
Q Consensus 190 ~~~gl~WVV~r~~Ie~~r~p~~gD~V~V~Twv~~~gr~~~~R-------~f~I~d~~~Gevia~A~S~wVlvD~~tRRpv 262 (340)
.-.|-.|+|.+. ++.+|-+-|-.+.+...-...|+..-.+ +--+.+..+.+.+-.--..|++||.+|=-..
T Consensus 16 ~~dg~~~~V~~~--~~~KpGKg~a~vrvk~k~l~tG~~~e~~f~~~~kve~a~ie~~~~q~lY~dg~~~~FMD~etyeq~ 93 (131)
T COG0231 16 VIDGEPYVVVEI--SHVKPGKGGAFVRVKLKNLFTGKKVEKTFKADDKVEVAIVERKTAQYLYIDGDFYVFMDLETYEQY 93 (131)
T ss_pred EECCeEEEEEEE--EEccCCCCCcEEEEEEEEccCCCEEEEEEcCCCEEEEeEEeeeeEEEEEcCCCeEEEccCCCceEE
Confidence 346778999887 8899999998666665554445432211 1111222244455555567899999999998
Q ss_pred CCCHHHHHhhccccCCC
Q 019520 263 KMPDEVRQEIEPYFLNS 279 (340)
Q Consensus 263 rIP~evre~i~~y~~~~ 279 (340)
.+|.+..+....|+.+.
T Consensus 94 ~v~~~~~~d~~~~l~eg 110 (131)
T COG0231 94 ELPKDQIGDAAKFLKEG 110 (131)
T ss_pred EecchhhhhHHHhcCCC
Confidence 88888776666666554
Done!