Query 019521
Match_columns 340
No_of_seqs 227 out of 2436
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 02:25:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 8.9E-71 1.9E-75 521.6 26.9 295 25-339 277-574 (574)
2 KOG1158 NADP/FAD dependent oxi 100.0 4.4E-70 9.5E-75 545.4 31.3 310 20-339 326-645 (645)
3 cd06204 CYPOR NADPH cytochrome 100.0 1.9E-67 4.2E-72 515.9 35.7 307 23-339 83-416 (416)
4 cd06202 Nitric_oxide_synthase 100.0 2.3E-67 5E-72 513.9 35.9 304 25-340 88-403 (406)
5 cd06203 methionine_synthase_re 100.0 1.9E-67 4.2E-72 513.4 34.3 301 24-339 82-398 (398)
6 cd06207 CyPoR_like NADPH cytoc 100.0 1E-66 2.2E-71 506.4 35.1 305 23-339 74-382 (382)
7 COG0369 CysJ Sulfite reductase 100.0 4.8E-65 1E-69 509.8 34.3 294 27-339 291-587 (587)
8 cd06206 bifunctional_CYPOR The 100.0 6.8E-64 1.5E-68 486.9 34.6 302 23-339 72-384 (384)
9 cd06199 SiR Cytochrome p450- l 100.0 4.2E-60 9E-65 456.4 33.0 289 25-339 66-360 (360)
10 PRK10953 cysJ sulfite reductas 100.0 1.6E-59 3.4E-64 475.9 35.0 289 28-339 308-600 (600)
11 PRK06214 sulfite reductase; Pr 100.0 1.1E-58 2.3E-63 461.4 35.6 292 28-339 235-530 (530)
12 TIGR01931 cysJ sulfite reducta 100.0 2.3E-58 5E-63 469.1 34.8 290 27-339 304-597 (597)
13 PLN03115 ferredoxin--NADP(+) r 100.0 5.5E-42 1.2E-46 328.6 20.3 225 102-339 123-367 (367)
14 cd06182 CYPOR_like NADPH cytoc 100.0 9.1E-41 2E-45 309.6 24.2 229 102-339 32-267 (267)
15 cd06208 CYPOR_like_FNR These f 100.0 5.3E-38 1.2E-42 294.0 22.7 224 102-339 41-286 (286)
16 PLN03116 ferredoxin--NADP+ red 100.0 4.4E-38 9.5E-43 297.3 22.2 225 102-339 57-307 (307)
17 cd06200 SiR_like1 Cytochrome p 100.0 1E-37 2.3E-42 285.8 21.6 210 102-339 32-245 (245)
18 TIGR03224 benzo_boxA benzoyl-C 100.0 1.4E-36 3E-41 297.1 22.8 222 102-339 176-411 (411)
19 cd06201 SiR_like2 Cytochrome p 100.0 4.3E-35 9.3E-40 274.7 19.6 202 103-339 85-289 (289)
20 PF00667 FAD_binding_1: FAD bi 100.0 3.6E-31 7.7E-36 238.6 10.5 136 21-157 84-219 (219)
21 cd00322 FNR_like Ferredoxin re 100.0 5.6E-29 1.2E-33 223.5 15.1 186 102-309 23-213 (223)
22 PRK10926 ferredoxin-NADP reduc 100.0 5.7E-29 1.2E-33 228.4 14.0 185 102-309 31-228 (248)
23 cd06189 flavin_oxioreductase N 100.0 6.6E-29 1.4E-33 224.3 13.9 181 102-309 26-212 (224)
24 cd06188 NADH_quinone_reductase 100.0 1.3E-28 2.8E-33 230.2 15.2 179 117-309 86-271 (283)
25 cd06195 FNR1 Ferredoxin-NADP+ 100.0 1.4E-28 3.1E-33 224.5 14.3 203 102-339 25-241 (241)
26 PRK08051 fre FMN reductase; Va 100.0 1.7E-28 3.6E-33 223.0 14.3 181 102-309 30-217 (232)
27 PRK11872 antC anthranilate dio 100.0 9.2E-29 2E-33 236.9 13.2 180 102-309 137-323 (340)
28 cd06211 phenol_2-monooxygenase 100.0 1.7E-28 3.6E-33 223.7 14.2 182 102-309 36-226 (238)
29 cd06209 BenDO_FAD_NAD Benzoate 100.0 1.7E-28 3.7E-33 222.1 13.9 179 102-309 31-215 (228)
30 cd06190 T4MO_e_transfer_like T 100.0 1.7E-28 3.7E-33 222.6 13.2 184 102-309 24-218 (232)
31 PRK05464 Na(+)-translocating N 100.0 1.6E-28 3.5E-33 240.8 13.9 180 116-309 209-395 (409)
32 PRK13289 bifunctional nitric o 100.0 3E-28 6.6E-33 238.2 14.5 179 102-309 185-380 (399)
33 PRK07609 CDP-6-deoxy-delta-3,4 100.0 2.3E-28 4.9E-33 234.2 13.3 180 102-308 132-319 (339)
34 PRK10684 HCP oxidoreductase, N 100.0 2.4E-28 5.2E-33 233.4 12.5 183 102-309 37-225 (332)
35 TIGR01941 nqrF NADH:ubiquinone 100.0 8E-28 1.7E-32 235.6 15.2 180 116-309 205-391 (405)
36 cd06187 O2ase_reductase_like T 100.0 8.5E-28 1.9E-32 216.6 14.3 181 102-309 24-212 (224)
37 cd06210 MMO_FAD_NAD_binding Me 100.0 7.4E-28 1.6E-32 219.0 14.0 182 102-309 35-223 (236)
38 PRK08345 cytochrome-c3 hydroge 100.0 1E-27 2.2E-32 224.8 14.4 179 102-309 38-234 (289)
39 cd06212 monooxygenase_like The 100.0 9.1E-28 2E-32 217.9 13.6 181 102-309 30-219 (232)
40 cd06191 FNR_iron_sulfur_bindin 100.0 9.5E-28 2.1E-32 217.6 13.4 178 102-308 28-218 (231)
41 cd06213 oxygenase_e_transfer_s 99.9 2.2E-27 4.8E-32 214.7 14.1 178 103-309 29-215 (227)
42 cd06194 FNR_N-term_Iron_sulfur 99.9 5.9E-27 1.3E-31 211.1 14.8 181 102-309 24-209 (222)
43 PRK05713 hypothetical protein; 99.9 4.8E-27 1E-31 222.6 12.7 175 102-309 119-296 (312)
44 cd06184 flavohem_like_fad_nad_ 99.9 1E-26 2.2E-31 213.0 14.3 179 102-309 37-231 (247)
45 cd06215 FNR_iron_sulfur_bindin 99.9 8.3E-27 1.8E-31 211.2 13.2 180 102-309 28-219 (231)
46 cd06216 FNR_iron_sulfur_bindin 99.9 1.1E-26 2.3E-31 212.4 13.3 180 102-309 46-232 (243)
47 cd06196 FNR_like_1 Ferredoxin 99.9 1.3E-26 2.8E-31 208.3 11.7 176 102-309 28-208 (218)
48 cd06221 sulfite_reductase_like 99.9 3.5E-26 7.6E-31 210.5 14.4 180 102-310 28-213 (253)
49 cd06217 FNR_iron_sulfur_bindin 99.9 3.3E-26 7.2E-31 207.8 12.6 182 102-309 31-223 (235)
50 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 4.4E-26 9.5E-31 219.5 13.0 185 102-309 33-229 (352)
51 PRK08221 anaerobic sulfite red 99.9 8.2E-26 1.8E-30 209.2 14.2 174 102-309 33-214 (263)
52 cd06198 FNR_like_3 NAD(P) bind 99.9 7.2E-26 1.6E-30 203.3 13.2 175 102-309 23-203 (216)
53 PTZ00274 cytochrome b5 reducta 99.9 6.5E-26 1.4E-30 215.2 12.2 181 103-305 83-281 (325)
54 cd06214 PA_degradation_oxidore 99.9 2E-25 4.2E-30 203.5 14.6 182 102-309 33-228 (241)
55 cd06218 DHOD_e_trans FAD/NAD b 99.9 1.6E-25 3.6E-30 205.2 14.0 172 102-310 25-203 (246)
56 cd06183 cyt_b5_reduct_like Cyt 99.9 1.3E-25 2.9E-30 203.4 13.1 183 102-308 29-223 (234)
57 TIGR02911 sulfite_red_B sulfit 99.9 2.3E-25 5E-30 205.9 13.4 174 102-309 31-212 (261)
58 cd06185 PDR_like Phthalate dio 99.9 2.8E-25 6.2E-30 198.5 13.3 171 102-309 26-198 (211)
59 PTZ00319 NADH-cytochrome B5 re 99.9 2.6E-25 5.6E-30 209.5 13.6 192 102-309 64-290 (300)
60 COG1018 Hmp Flavodoxin reducta 99.9 1.2E-24 2.7E-29 200.7 14.0 179 102-311 35-220 (266)
61 COG2871 NqrF Na+-transporting 99.9 1.4E-24 3E-29 195.2 13.0 185 116-314 210-401 (410)
62 PRK06222 ferredoxin-NADP(+) re 99.9 2.7E-24 5.8E-29 200.9 12.1 172 102-309 28-203 (281)
63 PRK00054 dihydroorotate dehydr 99.9 4.2E-24 9E-29 196.3 12.7 166 102-309 32-203 (250)
64 COG0543 UbiB 2-polyprenylpheno 99.9 9.7E-24 2.1E-28 194.0 13.9 177 102-310 36-215 (252)
65 cd06220 DHOD_e_trans_like2 FAD 99.9 7.7E-24 1.7E-28 192.6 12.6 165 101-309 23-189 (233)
66 cd06219 DHOD_e_trans_like1 FAD 99.9 8.3E-24 1.8E-28 194.1 12.5 171 102-308 27-201 (248)
67 cd06192 DHOD_e_trans_like FAD/ 99.9 1.3E-23 2.8E-28 192.1 12.6 171 102-310 25-201 (243)
68 cd06197 FNR_like_2 FAD/NAD(P) 99.9 1.9E-23 4.1E-28 188.5 12.0 157 103-308 27-211 (220)
69 KOG0534 NADH-cytochrome b-5 re 99.9 5.8E-23 1.3E-27 189.1 14.8 170 105-301 85-267 (286)
70 PLN02252 nitrate reductase [NA 99.9 7.4E-23 1.6E-27 215.5 14.4 191 103-308 666-877 (888)
71 COG4097 Predicted ferric reduc 99.9 7.3E-23 1.6E-27 190.2 10.7 175 102-309 243-423 (438)
72 PRK05802 hypothetical protein; 99.9 1.2E-22 2.7E-27 192.7 12.0 168 103-309 96-276 (320)
73 PTZ00306 NADH-dependent fumara 99.9 7E-22 1.5E-26 215.3 13.2 185 102-309 948-1151(1167)
74 PRK12778 putative bifunctional 99.8 3.9E-21 8.5E-26 201.9 13.0 172 102-309 28-203 (752)
75 cd06186 NOX_Duox_like_FAD_NADP 99.8 1.1E-20 2.4E-25 168.7 9.9 160 102-308 25-197 (210)
76 cd06193 siderophore_interactin 99.8 1.6E-20 3.6E-25 170.9 9.7 169 103-308 28-219 (235)
77 PRK12779 putative bifunctional 99.8 3.1E-19 6.7E-24 190.2 14.4 180 103-309 678-869 (944)
78 PF00175 NAD_binding_1: Oxidor 99.8 3.2E-19 7E-24 142.5 8.9 104 189-304 1-109 (109)
79 PRK12775 putative trifunctiona 99.8 5.3E-19 1.1E-23 189.8 12.6 171 102-309 28-203 (1006)
80 PLN02292 ferric-chelate reduct 99.7 7.8E-16 1.7E-20 158.2 12.8 172 103-298 353-549 (702)
81 PLN02844 oxidoreductase/ferric 99.6 1.1E-15 2.4E-20 157.5 13.3 174 103-297 340-537 (722)
82 PLN02631 ferric-chelate reduct 99.6 8.7E-16 1.9E-20 157.6 10.3 142 103-263 336-492 (699)
83 KOG3378 Globins and related he 99.4 1.7E-13 3.8E-18 123.0 3.0 176 103-312 182-371 (385)
84 PF08030 NAD_binding_6: Ferric 98.9 3.7E-09 7.9E-14 89.7 8.2 72 185-262 2-78 (156)
85 KOG0039 Ferric reductase, NADH 98.9 7.5E-09 1.6E-13 106.9 10.2 126 103-241 383-537 (646)
86 PRK06567 putative bifunctional 98.6 6.8E-08 1.5E-12 102.3 7.0 81 103-198 820-907 (1028)
87 PF00970 FAD_binding_6: Oxidor 98.6 1E-08 2.2E-13 80.4 -0.3 66 102-179 30-98 (99)
88 COG2375 ViuB Siderophore-inter 97.9 0.0003 6.4E-09 64.6 12.9 167 115-322 85-252 (265)
89 PF08022 FAD_binding_8: FAD-bi 94.3 0.0064 1.4E-07 48.2 -1.6 62 102-176 30-102 (105)
90 PF08021 FAD_binding_9: Sidero 93.2 0.04 8.8E-07 44.6 1.2 52 116-178 66-117 (117)
91 KOG4723 Uncharacterized conser 69.6 7.2 0.00016 34.6 4.2 115 216-340 19-140 (248)
92 COG3937 Uncharacterized conser 49.3 13 0.00029 29.3 2.1 40 293-333 17-56 (108)
93 PF04954 SIP: Siderophore-inte 44.6 65 0.0014 25.7 5.6 95 186-308 3-101 (119)
94 PF04703 FaeA: FaeA-like prote 43.7 67 0.0015 22.8 4.8 26 311-336 22-47 (62)
95 PF11272 DUF3072: Protein of u 41.7 69 0.0015 22.3 4.4 41 290-331 9-54 (57)
96 PRK12446 undecaprenyldiphospho 39.9 45 0.00097 32.1 4.6 25 185-209 2-28 (352)
97 KOG2536 MAM33, mitochondrial m 33.1 47 0.001 30.6 3.3 42 30-73 215-256 (263)
98 PF11074 DUF2779: Domain of un 29.7 65 0.0014 26.5 3.4 59 38-98 47-115 (130)
99 PF00782 DSPc: Dual specificit 26.5 2.5E+02 0.0055 22.1 6.4 58 270-329 57-114 (133)
100 PRK10310 PTS system galactitol 24.8 42 0.00091 25.7 1.3 11 188-198 5-15 (94)
101 PF13580 SIS_2: SIS domain; PD 24.6 1.4E+02 0.0031 24.3 4.6 26 270-295 19-44 (138)
102 PF06753 Bradykinin: Bradykini 24.0 18 0.0004 18.9 -0.6 9 194-202 6-14 (19)
103 KOG3363 Uncharacterized conser 23.4 1.3E+02 0.0029 25.8 4.1 50 286-336 113-166 (196)
104 PRK14841 undecaprenyl pyrophos 23.3 3E+02 0.0066 25.0 6.8 29 285-313 89-117 (233)
105 PF02330 MAM33: Mitochondrial 22.0 72 0.0016 28.1 2.5 43 29-73 157-199 (204)
106 KOG3219 Transcription initiati 21.0 2.3E+02 0.005 25.0 5.2 52 283-334 130-184 (195)
107 PF10925 DUF2680: Protein of u 20.8 2.6E+02 0.0057 19.5 4.6 30 301-330 18-47 (59)
108 COG3414 SgaB Phosphotransferas 20.6 53 0.0012 25.3 1.1 12 188-199 4-15 (93)
109 PF15335 CAAP1: Caspase activi 20.3 35 0.00075 24.5 0.0 45 2-52 16-61 (64)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=8.9e-71 Score=521.61 Aligned_cols=295 Identities=49% Similarity=0.851 Sum_probs=280.7
Q ss_pred CCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCCC
Q 019521 25 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP 104 (340)
Q Consensus 25 ~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~p 104 (340)
-+|.|+|+++++++|+||++ +|+++||..|+.|++|+.||++|+++++.+|.++|++|+.+++||++|+|++|+|+++|
T Consensus 277 ~~~~p~sl~~~lk~~~D~~S-vPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp 355 (574)
T KOG1159|consen 277 LLPNPLSLLNLLKYVLDFNS-VPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLP 355 (574)
T ss_pred ccCCchhHHHHHHHhccccc-CcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCC
Confidence 38889999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCC-CC
Q 019521 105 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PP 183 (340)
Q Consensus 105 ~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~-~~ 183 (340)
.++|++.+|.++||+|||||+|.. ..++|+|++|+|+|..++.|.|+||+||++|++ |+.|.+.+..|.+..| +.
T Consensus 356 ~~yl~d~~P~IrPR~fSIas~~~~--~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~--g~~i~~~v~~g~l~~p~~~ 431 (574)
T KOG1159|consen 356 IDYLLDLLPVIRPRAFSIASSPGA--HHLELLVAIVEYKTILKEPRRGLCSNWLASLKP--GDEIPIKVRPGTLYFPSDL 431 (574)
T ss_pred HHHHHHhccccccceeeeccCCCC--CceeEEEEEEEEeeeccccccchhHHHHhhcCC--CCeEEEEEecCccccCCCC
Confidence 999999999999999999999975 349999999999999999999999999999999 9999999999999999 77
Q ss_pred CCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEEEecCC
Q 019521 184 SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ 262 (340)
Q Consensus 184 ~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~ 262 (340)
++|+||||+|||||||||+++++..++. ....||||||+++ ||+|.+||.+..+. ..+.|||||+
T Consensus 432 ~~PlImVGPGTGvAPfRa~i~er~~q~~----~~~~lFfGCR~K~~Df~y~~eW~~~~~~----------~~~~AFSRDq 497 (574)
T KOG1159|consen 432 NKPLIMVGPGTGVAPFRALIQERIYQGD----KENVLFFGCRNKDKDFLYEDEWTELNKR----------AFHTAFSRDQ 497 (574)
T ss_pred CCCeEEEcCCCCcccHHHHHHHHHhhcc----CCceEEEecccCCccccccchhhhhhcc----------hhhhhccccc
Confidence 9999999999999999999999998544 4569999999999 99999999988665 4556999999
Q ss_pred CCccchhhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 019521 263 PQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339 (340)
Q Consensus 263 ~~~~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~w 339 (340)
++|.||||.+++.++.+|+++.+ ++.|||||+++.|+++|+++|.+|+.+.+|.++|.|. |++.|++.+||+.|+|
T Consensus 498 e~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 498 EQKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred ccceeHHHHHHHhhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 99999999999999999999985 9999999999999999999999999999999888777 9999999999999999
No 2
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4.4e-70 Score=545.38 Aligned_cols=310 Identities=41% Similarity=0.767 Sum_probs=291.4
Q ss_pred CCCCCCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCC
Q 019521 20 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 99 (340)
Q Consensus 20 ~~~~~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fp 99 (340)
-+.+.|++.|+|++++|+||+||++ +|++++++.||.||+|+.||++|+.|+++.|..+|.+++....++++|||++||
T Consensus 326 ~~~~~p~~~~~t~~~~l~~~ldi~~-~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fp 404 (645)
T KOG1158|consen 326 AKKPHPFPLPTTLRTALTHYLDITG-PPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFP 404 (645)
T ss_pred cccCCCCCCCCcHHHHHHHhccccC-CCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCC
Confidence 3455678999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCC-CccCCCCccccccCCCCCCcEEE--EEeecC
Q 019521 100 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIP--AWFQKG 176 (340)
Q Consensus 100 s~~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~--v~~~~g 176 (340)
+|++|+++|+..+|.++||+|||||||..+++.++++|.+|.|.++.+ ..+.|+||+||+++++ |+.+. +.....
T Consensus 405 s~kpP~~~ll~~lp~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~--~~~~~~~~~~~~s 482 (645)
T KOG1158|consen 405 SCKPPLPHLLELLPRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKP--GEKVPNPVPVGKS 482 (645)
T ss_pred CCCCCHHHHHHhCccccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCC--ccccCcceeeccc
Confidence 999999999999999999999999999999999999999999998775 6678999999999999 99988 555567
Q ss_pred CCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC---CCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCC
Q 019521 177 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG---PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKG 251 (340)
Q Consensus 177 ~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~---~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~ 251 (340)
.|++| ++++|+||||+||||||||||+|++.....++ ..+ +|||||||+.+ |++|++||+++.+. |.++
T Consensus 483 ~frlp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~-~~l~---- 556 (645)
T KOG1158|consen 483 MFRLPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKA-GILT---- 556 (645)
T ss_pred ceecCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhc-Ccch----
Confidence 89999 89999999999999999999999999986654 234 89999999999 99999999999877 8887
Q ss_pred CcEEEEEecCC-CCccchhhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 019521 252 GGFYVAFSRKQ-PQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQ 329 (340)
Q Consensus 252 ~~~~~a~Sr~~-~~~~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 329 (340)
++.+||||++ +++.||||.+++.+++||++|.+ +++|||||++++|+++|.++|.+|+++.+++++++|.+++++|+
T Consensus 557 -~l~~A~SReq~~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk 635 (645)
T KOG1158|consen 557 -RLDVAFSREQTPKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLK 635 (645)
T ss_pred -hheeeeeccCCCCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhh
Confidence 8999999998 77999999999999999999966 99999999996699999999999999999999999999999999
Q ss_pred HCCCEEEeec
Q 019521 330 RAGRYHVEAW 339 (340)
Q Consensus 330 ~~~R~~~d~w 339 (340)
+++||++|||
T Consensus 636 ~~~Ry~~DVw 645 (645)
T KOG1158|consen 636 KSKRYIEDVW 645 (645)
T ss_pred hccccccccC
Confidence 9999999999
No 3
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=1.9e-67 Score=515.94 Aligned_cols=307 Identities=41% Similarity=0.754 Sum_probs=284.8
Q ss_pred CCCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCC
Q 019521 23 KNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQ 102 (340)
Q Consensus 23 ~~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~ 102 (340)
..|+|.|+|++++|++||||++ +|++.||+.||.||+|+.+|++|++|++ +|.++|.+|+.++++|++|+|.+||+++
T Consensus 83 ~~~~~~~~tl~~~l~~~~Dl~~-~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~~f~s~~ 160 (416)
T cd06204 83 KVPFPCPTTYRTALRHYLDITA-PVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQDFPSAK 160 (416)
T ss_pred CCCCCCCccHHHHHHhhEEeCC-CCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHHhCcccC
Confidence 3568999999999999999999 9999999999999999999999999998 9999999999999999999999999999
Q ss_pred ---CCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCC-----------------
Q 019521 103 ---MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD----------------- 162 (340)
Q Consensus 103 ---~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~----------------- 162 (340)
+|+++|++.+|+++||+|||||+|..+++.++|+|++|+|.++.++.+.|+||+||.++.
T Consensus 161 ~~~~pl~~ll~~lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~ 240 (416)
T cd06204 161 PTPPPFDFLIELLPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGP 240 (416)
T ss_pred CCCCCHHHHHHhCccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccc
Confidence 999999999999999999999999878899999999999999888889999999999776
Q ss_pred ----CCCCcEEEEEeecCCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC-CCCCEEEEEeccCCc-hhhhHHH
Q 019521 163 ----PQQGIYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNED-DFLYREL 235 (340)
Q Consensus 163 ----~~~G~~v~v~~~~g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~~-d~ly~~e 235 (340)
+ |+.|.+.++.|.|.+| +..+|+||||+|||||||+||++++......+ ..++++||||||+++ |++|++|
T Consensus 241 ~~~~~--g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~e 318 (416)
T cd06204 241 RKKGG--GSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDE 318 (416)
T ss_pred cccCC--CCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHHH
Confidence 7 9999999999999998 66799999999999999999999987543211 247899999999994 9999999
Q ss_pred HHHhHhcCCCccccCCCcEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCC
Q 019521 236 WLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGE 315 (340)
Q Consensus 236 L~~~~~~~g~l~~~~~~~~~~a~Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~ 315 (340)
|++|.+..+++ +++++|||++..++|||+.+.+..+.+++++.+++.||||||+..|+++|.++|.++++++++
T Consensus 319 l~~~~~~~~~~------~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~ 392 (416)
T cd06204 319 LEEYAKLGGLL------ELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQGG 392 (416)
T ss_pred HHHHHHcCCce------EEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHHHHhCC
Confidence 99998873456 899999998877899999999988899888877899999999844999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCEEEeec
Q 019521 316 ASRDSAANWLKALQRAGRYHVEAW 339 (340)
Q Consensus 316 ~~~~~a~~~~~~l~~~~R~~~d~w 339 (340)
+++++|++|+++|+++|||++|||
T Consensus 393 ~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 393 MTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred CCHHHHHHHHHHHHHcCCeeEecC
Confidence 999999999999999999999999
No 4
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=2.3e-67 Score=513.89 Aligned_cols=304 Identities=36% Similarity=0.648 Sum_probs=278.4
Q ss_pred CCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCCC
Q 019521 25 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP 104 (340)
Q Consensus 25 ~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~p 104 (340)
+++.++|++++|++||||++ +|++.||+.||.||+|+.+|++|++|++ +.++|.+|+.+++++++|+|.+||++++|
T Consensus 88 ~~~~~~tl~~ll~~~lDl~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f~s~~~~ 164 (406)
T cd06202 88 ERLPPCTLRQALTRYLDITT-PPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEFPSLQVP 164 (406)
T ss_pred CCCCCccHHHHHHhhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhCCcCCCC
Confidence 45679999999999999999 9999999999999999999999999997 88899999999999999999999999999
Q ss_pred HHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCC--CCccCCCCccccccCCCCCCcEEEEEeec-CCCCCC
Q 019521 105 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY--KRKRTGLCSVWLAGLDPQQGIYIPAWFQK-GSLPRP 181 (340)
Q Consensus 105 ~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~--~~~~~G~~S~~L~~l~~~~G~~v~v~~~~-g~F~l~ 181 (340)
+++|++.+|+++||+|||||+|..+++.++|+|+++.|.++. ++.+.|+||+||+++++ |+.|.+.++. |.|.+|
T Consensus 165 ~~~ll~~lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~~~~~~~F~lp 242 (406)
T cd06202 165 ASLLLTQLPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTP--GDTVPCFVRSAPSFHLP 242 (406)
T ss_pred HHHHHHhCcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCC--CCEEEEEEeeCCccCCC
Confidence 999999999999999999999987789999999999998753 34578999999999999 9999999865 489998
Q ss_pred -CCCCCeEEEeCCcchhhHHHHHHHHHHhc-----CCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcE
Q 019521 182 -PPSVPLILIGPGTGCAPFRGFVEERAIQS-----SSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGF 254 (340)
Q Consensus 182 -~~~~pii~Ia~GtGIAPf~s~l~~~~~~~-----~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~ 254 (340)
+..+|+||||+|||||||+||++++.... .....++++||||||+++ |++|++||+++.+. +.+. ++
T Consensus 243 ~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~-~~~~-----~~ 316 (406)
T cd06202 243 EDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNK-GVLT-----EV 316 (406)
T ss_pred CCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHc-CCCc-----eE
Confidence 77799999999999999999999986431 111348999999999994 99999999999988 6664 89
Q ss_pred EEEEecCCC-CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 019521 255 YVAFSRKQP-QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAG 332 (340)
Q Consensus 255 ~~a~Sr~~~-~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~ 332 (340)
+++|||++. .++||||.+.++.+.+++++. .++.||||||+ .|+++|.++|.+|+++++++++++|++|+++|+++|
T Consensus 317 ~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~-~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~l~~~g 395 (406)
T cd06202 317 YTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGDV-TMAEDVSQTIQRILAEHGNMSAEEAEEFILKLRDEN 395 (406)
T ss_pred EEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCC-chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 999999865 589999999999999999884 59999999998 899999999999999999999999999999999999
Q ss_pred CEEEeecC
Q 019521 333 RYHVEAWS 340 (340)
Q Consensus 333 R~~~d~w~ 340 (340)
||++|||+
T Consensus 396 Ry~~dvw~ 403 (406)
T cd06202 396 RYHEDIFG 403 (406)
T ss_pred CeEEEecc
Confidence 99999996
No 5
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=1.9e-67 Score=513.43 Aligned_cols=301 Identities=34% Similarity=0.649 Sum_probs=277.4
Q ss_pred CCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCC
Q 019521 24 NTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQM 103 (340)
Q Consensus 24 ~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~ 103 (340)
.++|.++|++++|++||||++ +|+++||+.||.||+|+.+|++|.+|++.++.++|.+|+.+.++|++|||++||++++
T Consensus 82 ~~~p~~~tl~~ll~~~~Dl~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~~ 160 (398)
T cd06203 82 VHIPKVVTLRTILTWCLDIRA-IPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCRP 160 (398)
T ss_pred CCCCCCccHHHHHHHhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCCC
Confidence 357788999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCC-----CCCCcEEEEEee-cCC
Q 019521 104 PIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD-----PQQGIYIPAWFQ-KGS 177 (340)
Q Consensus 104 p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~-----~~~G~~v~v~~~-~g~ 177 (340)
|++++++.+|+++||+|||||+|..+++.++|+|+++.+++ .|+||+||+++. + |+.|.+.++ .|.
T Consensus 161 pl~~ll~~lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~--G~~v~i~~~~~g~ 232 (398)
T cd06203 161 PLSLLIEHLPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSH--GVKVPFYLRSSSR 232 (398)
T ss_pred CHHHHHHhCccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCC--CCEEEEEEecCCC
Confidence 99999999999999999999999776899999999997754 699999999887 8 999999995 678
Q ss_pred CCCC-C-CCCCeEEEeCCcchhhHHHHHHHHHHhcC---CCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCC
Q 019521 178 LPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSS---SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKG 251 (340)
Q Consensus 178 F~l~-~-~~~pii~Ia~GtGIAPf~s~l~~~~~~~~---~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~ 251 (340)
|.+| + ..+|+||||+|||||||+||++++..... ....++++||||||+++ |++|++||++|.+. +.+.
T Consensus 233 F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~-~~~~---- 307 (398)
T cd06203 233 FRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEE-GILT---- 307 (398)
T ss_pred cCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHc-CCCc----
Confidence 9998 5 67899999999999999999999886321 11348999999999995 99999999999988 6664
Q ss_pred CcEEEEEecCCC---CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 019521 252 GGFYVAFSRKQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKA 327 (340)
Q Consensus 252 ~~~~~a~Sr~~~---~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 327 (340)
+++++|||++. .++||||.+.+..+.+++++. +++.||||||+..|+++|+++|.+|+++++|+++++|++|+++
T Consensus 308 -~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~ 386 (398)
T cd06203 308 -RLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLAR 386 (398)
T ss_pred -eEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 79999999877 489999999999999999875 4899999999768999999999999999999999999999999
Q ss_pred HHHCCCEEEeec
Q 019521 328 LQRAGRYHVEAW 339 (340)
Q Consensus 328 l~~~~R~~~d~w 339 (340)
|+++|||++|+|
T Consensus 387 l~~~gRy~~dvw 398 (398)
T cd06203 387 LRKEDRYLEDVW 398 (398)
T ss_pred HHHcCCeeeecC
Confidence 999999999999
No 6
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=1e-66 Score=506.43 Aligned_cols=305 Identities=46% Similarity=0.782 Sum_probs=282.3
Q ss_pred CCCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCC
Q 019521 23 KNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQ 102 (340)
Q Consensus 23 ~~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~ 102 (340)
..++|.|+|++++|++||||++ +|+++||+.||.||+|+.+|++|.++++.++.+.|.+| ++++++|+|.+||+++
T Consensus 74 ~~~~~~~~t~~~ll~~~~dl~~-~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~ 149 (382)
T cd06207 74 KPPFPEPISVRQLLKKFLDIFG-KPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVR 149 (382)
T ss_pred CCCCCCCccHHHHHHhhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCC
Confidence 3568999999999999999999 99999999999999999999999999999999999888 7899999999999999
Q ss_pred CCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCC-
Q 019521 103 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP- 181 (340)
Q Consensus 103 ~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~- 181 (340)
+|++.+++.+|+++||+|||||+|..+++.++|+|+++.|.++.++.+.|+||+||.++++ |+.|.+.+|.|.|.+|
T Consensus 150 ~~~~~ll~~lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~~p~g~F~lp~ 227 (382)
T cd06207 150 PTLEQLLELCPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKV--GQRVTVFIKKSSFKLPK 227 (382)
T ss_pred CCHHHHHHhCcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCC--CCEEEEEEECCcccCCC
Confidence 9999999999999999999999997678999999999999998888889999999999999 9999999999999998
Q ss_pred CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC-CCCCEEEEEeccCC-chhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521 182 PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 182 ~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S 259 (340)
+..+|+||||+|||||||+||++++......+ ..++++||||||++ .|++|++||++|.+. +... +++++||
T Consensus 228 ~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~-~~~~-----~~~~a~S 301 (382)
T cd06207 228 DPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKS-GVLT-----TLGTAFS 301 (382)
T ss_pred CCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhC-CCCc-----eEEEEec
Confidence 66799999999999999999999987642111 34899999999999 599999999999987 5543 8999999
Q ss_pred cCCCCccchhhhHHHhHHHHHHhhcCC-CEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEee
Q 019521 260 RKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEA 338 (340)
Q Consensus 260 r~~~~~~yVqd~l~~~~~~l~~~l~~~-~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~ 338 (340)
|++..++|||+.+.+..+.+++++.++ +.||||||+..|+++|+++|.+++++++++++++|++|+++|+++|||++||
T Consensus 302 rd~~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 381 (382)
T cd06207 302 RDQPKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEA 381 (382)
T ss_pred CCCCCceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 998889999999999988999888765 4999999993399999999999999999999999999999999999999999
Q ss_pred c
Q 019521 339 W 339 (340)
Q Consensus 339 w 339 (340)
|
T Consensus 382 w 382 (382)
T cd06207 382 W 382 (382)
T ss_pred C
Confidence 9
No 7
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-65 Score=509.80 Aligned_cols=294 Identities=41% Similarity=0.730 Sum_probs=277.9
Q ss_pred cCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCCCHH
Q 019521 27 EVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPID 106 (340)
Q Consensus 27 ~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~p~~ 106 (340)
+.++++.++|++|+|++. .| |.|+..++.|+.++..++.|..++ ..++..|.. +++++|+|.+||++++|.+
T Consensus 291 ~~~~~~~~~l~~~~e~~~-~~-~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~ 362 (587)
T COG0369 291 GETLPLVEALKSHFEFTS-AP-KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAE 362 (587)
T ss_pred CCcchHHHHHHHheeccc-ch-HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHH
Confidence 788999999999999999 87 999999999999999999999887 566777775 8999999999999999999
Q ss_pred HHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecC-CCCCC-CCC
Q 019521 107 WLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLPRP-PPS 184 (340)
Q Consensus 107 ~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g-~F~l~-~~~ 184 (340)
.++..+|+++||.|||||++..++++|+|+|++|+|.+. ++.+.|+||+||+++.+ .|+.|.+.++.+ .|++| ++.
T Consensus 363 ~li~~l~~lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~-~g~~i~v~v~~n~nf~lp~~~~ 440 (587)
T COG0369 363 ELIDLLPPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLE-EGDTIPVFVQPNKNFRLPEDPE 440 (587)
T ss_pred HHHHhCccCCCeeeEeccCCCCCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhc-CCCeEEEEeccCCccccCCCCC
Confidence 999999999999999999999999999999999999997 55899999999997643 299999999888 89999 777
Q ss_pred CCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCC
Q 019521 185 VPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP 263 (340)
Q Consensus 185 ~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~ 263 (340)
+||||||+||||||||||+|++...+.+ +++|||||||+.+ ||+|++||+++.+. |.++ ++..||||++.
T Consensus 441 ~PiIMIG~GTGIAPFRafvq~r~~~~~~---gk~wLfFG~R~~~~DfLY~~Ewe~~~~~-G~~~-----~l~~AfSRdq~ 511 (587)
T COG0369 441 TPIIMIGPGTGIAPFRAFVQERAANGAE---GKNWLFFGCRHFTEDFLYQEEWEEYLKD-GVLT-----RLDLAFSRDQE 511 (587)
T ss_pred CceEEEcCCCCchhHHHHHHHHHhcccc---CceEEEecCCCCccchhhHHHHHHHHhc-CCce-----eEEEEEeecCC
Confidence 9999999999999999999999999877 7999999999988 99999999999999 8776 99999999999
Q ss_pred CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 019521 264 QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339 (340)
Q Consensus 264 ~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~w 339 (340)
+|.||||+|++++++||+++.+++.|||||+++.|+++|.++|.+|+.+.++++.++|.+++++|++++||++|||
T Consensus 512 ~KiYVQd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 512 EKIYVQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred CCccHHHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 9999999999999999999999999999997789999999999999999999999999999999999999999999
No 8
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=6.8e-64 Score=486.90 Aligned_cols=302 Identities=31% Similarity=0.562 Sum_probs=275.1
Q ss_pred CCCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCC
Q 019521 23 KNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQ 102 (340)
Q Consensus 23 ~~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~ 102 (340)
+.|++.|+|++++|++|+||++ +|+++||+.||.||+|+.+|++|..+++ ++|.+++.++++|++|+|.+||+++
T Consensus 72 ~~p~~~~~tl~~~l~~~~Di~~-~p~~~~l~~la~~~~~~~~k~~l~~~~~----~~~~~~~~~~~~~~~d~l~~f~s~~ 146 (384)
T cd06206 72 GLPLGTPISVSELLSSYVELSQ-PATRRQLAALAEATRCPDTKALLERLAG----EAYAAEVLAKRVSVLDLLERFPSIA 146 (384)
T ss_pred CCCCCCCEEHHHHHHhhccccC-CCCHHHHHHHHHHCCCHHHHHHHHHhhh----hHHHHHHHhcCCCHHHHHHhCCCCC
Confidence 3567889999999999999999 9999999999999999999999998853 5788889899999999999999999
Q ss_pred CCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCC-CccCCCCccccccCCCCCCcEEEEE--eecCCCC
Q 019521 103 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIPAW--FQKGSLP 179 (340)
Q Consensus 103 ~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~v~--~~~g~F~ 179 (340)
+|+++++..+|+++||+|||||+|..+++.++|+|+++.+.++.+ +.+.|.||+||.++++ |+.|.+. ++.|.|.
T Consensus 147 ~~~~~~l~~~p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~i~~p~g~F~ 224 (384)
T cd06206 147 LPLATFLAMLPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRP--GDSIHVSVRPSHSAFR 224 (384)
T ss_pred CCHHHHHHhCcccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCC--CCeEEEEEecCCCccC
Confidence 999999999999999999999999766789999999999887554 5678999999999999 9999976 5678999
Q ss_pred CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC-CCCCEEEEEeccCC-chhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521 180 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYV 256 (340)
Q Consensus 180 l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~eL~~~~~~~g~l~~~~~~~~~~ 256 (340)
++ +..+|+||||+|||||||+||++++......+ ..++++||||||+. .|++|++||++|.+. +++ ++++
T Consensus 225 l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~~------~l~~ 297 (384)
T cd06206 225 PPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAA-GVV------SVRR 297 (384)
T ss_pred CCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHC-CCe------EEEE
Confidence 98 66789999999999999999999987642211 23789999999999 599999999999987 889 9999
Q ss_pred EEecCCCC-ccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHC
Q 019521 257 AFSRKQPQ-KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEG----EASRDSAANWLKALQRA 331 (340)
Q Consensus 257 a~Sr~~~~-~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~ 331 (340)
++||++.. ++|||+.+.+..+.+++++.+++.||||||+ .|+++|.++|.+++.+++ |++.++|++|+++|+++
T Consensus 298 a~Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~-~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~ 376 (384)
T cd06206 298 AYSRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGDG-RMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNK 376 (384)
T ss_pred EecccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECCC-chHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHc
Confidence 99998764 8999999999888898888778999999999 799999999999999999 99999999999999999
Q ss_pred CCEEEeec
Q 019521 332 GRYHVEAW 339 (340)
Q Consensus 332 ~R~~~d~w 339 (340)
|||++|+|
T Consensus 377 gry~~dvw 384 (384)
T cd06206 377 GRYATDVF 384 (384)
T ss_pred CCeeeecC
Confidence 99999999
No 9
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=4.2e-60 Score=456.39 Aligned_cols=289 Identities=33% Similarity=0.583 Sum_probs=260.2
Q ss_pred CCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCC--CCC
Q 019521 25 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP--SVQ 102 (340)
Q Consensus 25 ~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fp--s~~ 102 (340)
++|.++|++++|++||||++ + +++.|+.+|+++.++++|.. ++.++|.+ +++++|+|++|| +++
T Consensus 66 ~~~~~~t~~~~l~~~~dl~~-~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 66 VGGGTLPLREALIKHYEITT-L----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred CCCCcccHHHHHHhhhhhcc-C----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 46789999999999999999 4 45569999999988888775 57777754 589999999999 999
Q ss_pred CCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccC-CCCCCcEEEEEeecC-CCCC
Q 019521 103 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGL-DPQQGIYIPAWFQKG-SLPR 180 (340)
Q Consensus 103 ~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l-~~~~G~~v~v~~~~g-~F~l 180 (340)
+|..+++..+|+++||+|||||+|..+++.++|+|++|+|.+. .+.+.|+||+||+++ ++ |+.|.++++.| .|.+
T Consensus 132 ~~~gq~l~l~~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~--Gd~v~v~~~~~~~F~l 208 (360)
T cd06199 132 LTAEELLDLLRPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKE--GDTVPVFVQPNPHFRL 208 (360)
T ss_pred CCHHHHHHhCcCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCC--CCEEEEEEecCCCcCC
Confidence 9999999999999999999999997778899999999999874 466789999999975 58 99999998665 7999
Q ss_pred C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521 181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258 (340)
Q Consensus 181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~ 258 (340)
| +..+|+||||+|||||||+||++++...... ++++||||||+++ |++|++||+++.+. +... +++++|
T Consensus 209 p~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~---~~~~L~~G~R~~~~D~~y~~el~~~~~~-~~~~-----~~~~a~ 279 (360)
T cd06199 209 PEDPDAPIIMVGPGTGIAPFRAFLQEREATGAK---GKNWLFFGERHFATDFLYQDELQQWLKD-GVLT-----RLDTAF 279 (360)
T ss_pred CCCCCCCEEEEecCcChHHHHHHHHHHHhccCC---CcEEEEEcCCCCccchhHHHHHHHHHHc-CCCe-----EEEEEE
Confidence 8 6678999999999999999999999876544 8999999999985 99999999999987 4433 899999
Q ss_pred ecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEee
Q 019521 259 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEA 338 (340)
Q Consensus 259 Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~ 338 (340)
||++..++|||+.+.++.+.+++++.+++.||||||++.|+++|+++|.+|+++++++++++|++|+++|+++|||++|+
T Consensus 280 Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 359 (360)
T cd06199 280 SRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDV 359 (360)
T ss_pred ccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 99988889999999999999998887789999999987899999999999999999999999999999999999999999
Q ss_pred c
Q 019521 339 W 339 (340)
Q Consensus 339 w 339 (340)
|
T Consensus 360 w 360 (360)
T cd06199 360 Y 360 (360)
T ss_pred C
Confidence 9
No 10
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=1.6e-59 Score=475.93 Aligned_cols=289 Identities=30% Similarity=0.529 Sum_probs=263.5
Q ss_pred CcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCCCHHH
Q 019521 28 VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDW 107 (340)
Q Consensus 28 ~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~p~~~ 107 (340)
.++|++++|++|+||+. |++.||+.++.++.++. |.++.. +.+.+.+|.. +++++|||++|| ++++.+.
T Consensus 308 ~~~tl~~~l~~~~dl~~--~~~~~l~~~a~~~~~~~----l~~~~~--~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q 376 (600)
T PRK10953 308 KTLPLAEALQWHFELTV--NTANIVENYATLTRSET----LLPLVG--DKAALQHYAA--TTPIVDMVRFAP-AQLDAEQ 376 (600)
T ss_pred CCCCHHHHHHHhcccCC--CcHHHHHHHHHhCCCHH----HHHHhc--CHHHHHHHhc--CCCHHHHHHhCC-CCCCHHH
Confidence 47899999999999998 57899999999998754 333443 5566777764 699999999998 6899999
Q ss_pred HHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecC-CCCCC-CCC
Q 019521 108 LVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG-SLPRP-PPS 184 (340)
Q Consensus 108 l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g-~F~l~-~~~ 184 (340)
++..+|+++||+|||||+|..++++++|+|++|+|.. .++.+.|+||+||. .+++ |+.|.+.++.| .|++| ++.
T Consensus 377 ~l~ll~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~--Gd~v~v~~~~~~~F~lp~~~~ 453 (600)
T PRK10953 377 LIGLLRPLTPRLYSIASSQAEVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEE--EGEVRVFIEHNDNFRLPANPE 453 (600)
T ss_pred HHHhCCCCCCeeeecccCCCCCCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCC--CCEEEEEeccCCcccCCCCCC
Confidence 9999999999999999999777899999999999985 47788999999998 5899 99999999765 89999 778
Q ss_pred CCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCC
Q 019521 185 VPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP 263 (340)
Q Consensus 185 ~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~ 263 (340)
+|+||||+||||||||||++++...... +++|||||||+.. |++|++||++|.+. |.++ +++++|||++.
T Consensus 454 ~piImIg~GTGIAPfrsflq~r~~~~~~---~~~~LffG~R~~~~D~lY~~El~~~~~~-g~l~-----~l~~afSRd~~ 524 (600)
T PRK10953 454 TPVIMIGPGTGIAPFRAFMQQRAADGAP---GKNWLFFGNPHFTEDFLYQVEWQRYVKE-GLLT-----RIDLAWSRDQK 524 (600)
T ss_pred CCEEEEecCcCcHHHHHHHHHHHHcCCC---CCeEEEeeccCCccchhHHHHHHHHHHc-CCcc-----eEEEEECCCCC
Confidence 9999999999999999999999887655 8999999999966 99999999999998 8887 89999999998
Q ss_pred CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 019521 264 QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339 (340)
Q Consensus 264 ~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~w 339 (340)
+++||||+|.++.+++|+++.++++|||||+++.|+++|.++|.+|+++++|+++++|++|+++|+++|||++|||
T Consensus 525 ~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 525 EKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred CCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 8999999999999999999988999999999878999999999999999999999999999999999999999999
No 11
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=1.1e-58 Score=461.43 Aligned_cols=292 Identities=34% Similarity=0.584 Sum_probs=260.0
Q ss_pred CcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCCCHHH
Q 019521 28 VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDW 107 (340)
Q Consensus 28 ~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~p~~~ 107 (340)
.++|++++|++|+||++ +| +.||+.|+.+++++. |++|+.|++.+..+.. ....+++|+|++||++++|+++
T Consensus 235 ~~~tlr~~L~~~~Dl~~-~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~-----~~~~~vldvL~~fp~~~~~~~~ 306 (530)
T PRK06214 235 GGKTLREALLEDVSLGP-AP-DGLFELLSYITGGAA-RKKARALAAGEDPDGD-----AATLDVLAALEKFPGIRPDPEA 306 (530)
T ss_pred CCccHHHHHHHheeccC-CC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhh-----hhhCcHHHHHHhCCCCCCCHHH
Confidence 58999999999999999 65 789999999998776 8888888763322221 1246899999999999999999
Q ss_pred HHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecC-CCCCC-CCC
Q 019521 108 LVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG-SLPRP-PPS 184 (340)
Q Consensus 108 l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g-~F~l~-~~~ 184 (340)
+++.+|+++||+|||||+|..+++.++|+|++|+|.+ .++.+.|+||+||. ++++ |+.|.++++.+ .|.+| +..
T Consensus 307 lle~lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~--Gd~V~v~i~~~~gF~lp~~~~ 383 (530)
T PRK06214 307 FVEALDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAP--GTRVRVYVQKAHGFALPADPN 383 (530)
T ss_pred HHhhcCCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCC--CCEEEEEecCCCCCccCCCCC
Confidence 9999999999999999999767899999999999985 46778999999997 7999 99999988433 49998 677
Q ss_pred CCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCC
Q 019521 185 VPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP 263 (340)
Q Consensus 185 ~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~ 263 (340)
+|+||||+|||||||+||++++...... ++++||||||+.+ |++|++||++|.+. +.++ +++++|||++.
T Consensus 384 ~PiImIg~GTGIAPfrsfLq~r~~~~~~---g~~~LffG~R~~~~D~ly~dEL~~l~~~-g~l~-----~l~~afSRd~~ 454 (530)
T PRK06214 384 TPIIMVGPGTGIAPFRAFLHERAATKAP---GRNWLFFGHQRSATDFFYEDELNGLKAA-GVLT-----RLSLAWSRDGE 454 (530)
T ss_pred CCEEEEcCCeeHHHHHHHHHHHHHhcCC---CCeEEEEEecCChhhhHHHHHHHHHHHh-CCce-----EEEEEEecCCC
Confidence 8999999999999999999998876544 8899999998876 99999999999987 6664 79999999988
Q ss_pred CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 019521 264 QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339 (340)
Q Consensus 264 ~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~w 339 (340)
+++|||+.|.++.+++++++.++++||||||++.|+++|+++|.+|+++++++++++|++|+++|+++|||++|||
T Consensus 455 ~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~~gRY~~Dvw 530 (530)
T PRK06214 455 EKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRYQADVY 530 (530)
T ss_pred CCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 8999999999999999998877999999999757989999999999999999999999999999999999999999
No 12
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=2.3e-58 Score=469.14 Aligned_cols=290 Identities=33% Similarity=0.586 Sum_probs=262.5
Q ss_pred cCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCCCHH
Q 019521 27 EVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPID 106 (340)
Q Consensus 27 ~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~p~~ 106 (340)
+.++|++++|++|+||+. +++.||+.+|.+|+|+..++.+ + +.+.+.+|+. +++++|+|.+|| ++++.+
T Consensus 304 ~~~~tl~~~l~~~~dl~~--~~~~~l~~la~~~~~~~l~~~~----~--~~~~~~~y~~--~~~~~dvl~~fp-~~~~~g 372 (597)
T TIGR01931 304 GKTIPLFEALITHFELTQ--NTKPLLKAYAELTGNKELKALI----A--DNEKLKAYIQ--NTPLIDLIRDYP-ADLDAE 372 (597)
T ss_pred CCCcCHHHHHHhceeCCC--CCHHHHHHHHHhcCCHHHHHHh----c--CHHHHHHHHc--CCCHHHHHHHCC-CCCCHH
Confidence 457899999999999998 5799999999999998655433 3 5667888885 789999999999 788888
Q ss_pred HHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeec-CCCCCC-CC
Q 019521 107 WLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK-GSLPRP-PP 183 (340)
Q Consensus 107 ~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~-g~F~l~-~~ 183 (340)
.++.++|++.||+|||||+|..+++.++|+|++|+|.. .++.+.|.||+||++ +++ |++|.+.++. |.|++| ++
T Consensus 373 q~v~ll~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~~l~~--Gd~v~v~~~~~~~F~lp~~~ 449 (597)
T TIGR01931 373 QLISLLRPLTPRLYSISSSQSEVGDEVHLTVGVVRYQA-HGRARLGGASGFLAERLKE--GDTVPVYIEPNDNFRLPEDP 449 (597)
T ss_pred HHHHhCcccCCceeeeccCcccCCCEEEEEEEEEEecC-CCCccccchhHHHHhhCCC--CCEEEEEEeeCCcccCCCCC
Confidence 88999999999999999999777889999999999975 577889999999996 999 9999999865 479998 77
Q ss_pred CCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEEEecCC
Q 019521 184 SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ 262 (340)
Q Consensus 184 ~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~ 262 (340)
.+|+||||+|||||||+||++++...... ++++||||||+.. |++|++||++|.+. +.++ +++++|||++
T Consensus 450 ~~piImIg~GTGIAPfrsflq~r~~~~~~---g~~~LffG~R~~~~D~ly~~El~~~~~~-~~l~-----~l~~afSRd~ 520 (597)
T TIGR01931 450 DTPIIMIGPGTGVAPFRAFMQERAEDGAK---GKNWLFFGNPHFTTDFLYQVEWQNYLKK-GVLT-----KMDLAFSRDQ 520 (597)
T ss_pred CCCEEEEcCCcCchhHHHHHHHHHHccCC---CCEEEEECCCCCCcchhHHHHHHHHHHc-CCCc-----eeEEEEecCC
Confidence 89999999999999999999999877655 8999999999955 99999999999988 7775 7999999987
Q ss_pred CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 019521 263 PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339 (340)
Q Consensus 263 ~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~w 339 (340)
..++||||+|.++.+++++++.++++|||||++..|+++|.++|.+++++++++++++|++|+++|+++|||++|||
T Consensus 521 ~~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 521 AEKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred CCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 77999999999999999998878999999995559999999999999999999999999999999999999999999
No 13
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=5.5e-42 Score=328.63 Aligned_cols=225 Identities=26% Similarity=0.418 Sum_probs=192.8
Q ss_pred CCCHHHHHHhcCC-------CCcceeecCCCCCC---CCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEE
Q 019521 102 QMPIDWLVQLVPP-------LKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPA 171 (340)
Q Consensus 102 ~~p~~~l~~~lp~-------~~pR~YSIaS~p~~---~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v 171 (340)
..|||++....|. ..+|+|||||+|.. +++.++|+|+.+.|.+..+....|.||+||+++++ ||.|.+
T Consensus 123 f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~--Gd~V~v 200 (367)
T PLN03115 123 YREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKP--GAEVKI 200 (367)
T ss_pred cCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCC--cCEEEE
Confidence 4789998877653 35799999999843 25789999999988876667788999999999999 999999
Q ss_pred EeecCCCC-CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC--CCCCEEEEEeccCCchhhhHHHHHHhHhcCC-Cc
Q 019521 172 WFQKGSLP-RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VF 246 (340)
Q Consensus 172 ~~~~g~F~-l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-~l 246 (340)
.+|.|.|. +| +..+|+||||+|||||||+||++++....... ..++++||||||+.+|++|.+||++|.+.++ ++
T Consensus 201 ~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f 280 (367)
T PLN03115 201 TGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENF 280 (367)
T ss_pred EeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCE
Confidence 99999765 56 66789999999999999999999876543211 1368999999999999999999999987644 78
Q ss_pred cccCCCcEEEEEecCCC----CccchhhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHH
Q 019521 247 SEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSA 321 (340)
Q Consensus 247 ~~~~~~~~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a 321 (340)
+++.++||++. .++|||+.+.++.+++++++.. +++||+|||+ +|.++|.++|.++....+ + ++
T Consensus 281 ------~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp~-~M~~~V~~~l~~l~~~~g-~---~~ 349 (367)
T PLN03115 281 ------RLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGLK-GMEKGIDDIMVSLAAKDG-I---DW 349 (367)
T ss_pred ------EEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCCH-HHHHHHHHHHHHHHHHhC-c---cH
Confidence 99999999864 4789999999999999988754 7899999998 999999999999998864 3 58
Q ss_pred HHHHHHHHHCCCEEEeec
Q 019521 322 ANWLKALQRAGRYHVEAW 339 (340)
Q Consensus 322 ~~~~~~l~~~~R~~~d~w 339 (340)
++++++|+++|||+.|+|
T Consensus 350 ~~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 350 FEYKKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHHHHCCCeEEecC
Confidence 999999999999999998
No 14
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=9.1e-41 Score=309.62 Aligned_cols=229 Identities=43% Similarity=0.738 Sum_probs=200.6
Q ss_pred CCCHHHHHHhcCC-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecC-CCC
Q 019521 102 QMPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLP 179 (340)
Q Consensus 102 ~~p~~~l~~~lp~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g-~F~ 179 (340)
..||||+...+|. ..+|+|||+|.|....+.++|+|+.+.+++.......|.+|+||+++++ |+.|.+.+|.| .|.
T Consensus 32 ~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~--Gd~v~v~~p~G~~f~ 109 (267)
T cd06182 32 YQPGDHLGVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQL--GAKVTVFIRPAPSFR 109 (267)
T ss_pred cCCCCEEEEecCCCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCC--CCEEEEEEecCCccc
Confidence 3799998887765 4699999999986556899999999877665555667999999999999 99999999999 899
Q ss_pred CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC-CCCCEEEEEeccCC-chhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521 180 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYV 256 (340)
Q Consensus 180 l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~eL~~~~~~~g~l~~~~~~~~~~ 256 (340)
++ +..+|+||||+|||||||++|++++....... ..++++||||+|+. +|++|.++|++|.+...++ ++++
T Consensus 110 l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~------~~~~ 183 (267)
T cd06182 110 LPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALT------RLDV 183 (267)
T ss_pred CCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcc------eEEE
Confidence 98 65789999999999999999999998741100 12789999999999 7999999999999874567 8999
Q ss_pred EEecCCCC-ccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCc-cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCE
Q 019521 257 AFSRKQPQ-KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRY 334 (340)
Q Consensus 257 a~Sr~~~~-~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~-M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~ 334 (340)
++||++.. ++||++.+.+..+.+++.+.+++.||+|||+ . |++.+.+.|.++++++++++.++|++++++|++.|||
T Consensus 184 ~~S~~~~~~~~~v~~~l~~~~~~l~~~l~~~~~vyvCGp~-~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (267)
T cd06182 184 AFSREQAEPKVYVQDKLKEHAEELRRLLNEGAHIYVCGDA-KSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRY 262 (267)
T ss_pred EEccCCCCCceehHHHHHHhHHHHHHHHhcCCEEEEECCc-ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCe
Confidence 99997664 7899999988777777777667799999999 7 9999999999999999999999999999999999999
Q ss_pred EEeec
Q 019521 335 HVEAW 339 (340)
Q Consensus 335 ~~d~w 339 (340)
++|+|
T Consensus 263 ~~~~~ 267 (267)
T cd06182 263 VEDVW 267 (267)
T ss_pred EEecC
Confidence 99999
No 15
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=5.3e-38 Score=294.01 Aligned_cols=224 Identities=29% Similarity=0.465 Sum_probs=186.3
Q ss_pred CCCHHHHHHhcCC--------CCcceeecCCCCCC---CCCeEEEEEEEEEecCCCC-CccCCCCccccccCCCCCCcEE
Q 019521 102 QMPIDWLVQLVPP--------LKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYI 169 (340)
Q Consensus 102 ~~p~~~l~~~lp~--------~~pR~YSIaS~p~~---~~~~v~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v 169 (340)
..||||+...+|. ..+|+|||||+|.. +++.++|+|+.+.+.++.. ..+.|.+|+||+++++ |+.|
T Consensus 41 ~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v 118 (286)
T cd06208 41 YLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKP--GDDV 118 (286)
T ss_pred ccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCC--CCEE
Confidence 4689997776553 23799999999853 2478999999987655332 4556999999999999 9999
Q ss_pred EEEeecCCCCC-C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCC--CCCCCEEEEEeccCCchhhhHHHHHHhHhcCC-
Q 019521 170 PAWFQKGSLPR-P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS--GPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG- 244 (340)
Q Consensus 170 ~v~~~~g~F~l-~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~--~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g- 244 (340)
.+.+|.|.|.+ + +..+|+||||+|||||||+||++++...... ...++++|+||+|+.+|++|.++|+++.+.++
T Consensus 119 ~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~ 198 (286)
T cd06208 119 QITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPD 198 (286)
T ss_pred EEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCC
Confidence 99999998765 4 4567999999999999999999998875210 12268999999999999999999999998644
Q ss_pred CccccCCCcEEEEEecCCC----CccchhhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHH
Q 019521 245 VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRD 319 (340)
Q Consensus 245 ~l~~~~~~~~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~ 319 (340)
++ +++.++||++. .++||++.+.+..+.+++.+.. +..||+|||+ .|+++|.+.|.+++. +..
T Consensus 199 ~~------~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp~-~m~~~v~~~L~~~~~-----~~~ 266 (286)
T cd06208 199 NF------RIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGLK-GMEPGVDDALTSVAE-----GGL 266 (286)
T ss_pred cE------EEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCCc-hHHHHHHHHHHHHHh-----ccH
Confidence 67 89999998754 4789999999887777776664 5699999998 999999999999987 236
Q ss_pred HHHHHHHHHHHCCCEEEeec
Q 019521 320 SAANWLKALQRAGRYHVEAW 339 (340)
Q Consensus 320 ~a~~~~~~l~~~~R~~~d~w 339 (340)
+|++++.+|+++|||..|+|
T Consensus 267 ~~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 267 AWEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred HHHHHHHHHHHcCCeEEecC
Confidence 89999999999999999999
No 16
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=4.4e-38 Score=297.31 Aligned_cols=225 Identities=27% Similarity=0.414 Sum_probs=185.0
Q ss_pred CCCHHHHHHhcCCC---------CcceeecCCCCCCC---CCeEEEEEEEEEecCCCCCc----cCCCCccccccCCCCC
Q 019521 102 QMPIDWLVQLVPPL---------KTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRK----RTGLCSVWLAGLDPQQ 165 (340)
Q Consensus 102 ~~p~~~l~~~lp~~---------~pR~YSIaS~p~~~---~~~v~l~V~~v~~~~~~~~~----~~G~~S~~L~~l~~~~ 165 (340)
..||||+...+|.. ..|+|||||+|..+ +..++|+|+.+.|.++.... +.|.+|+||+++++
T Consensus 57 f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~-- 134 (307)
T PLN03116 57 YWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKP-- 134 (307)
T ss_pred eecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCC--
Confidence 37899987776632 47999999999432 23899999988766543222 68999999999999
Q ss_pred CcEEEEEeecCCCCC-C--CCCCCeEEEeCCcchhhHHHHHHHHHHhcCC--CCCCCEEEEEeccCCchhhhHHHHHHhH
Q 019521 166 GIYIPAWFQKGSLPR-P--PPSVPLILIGPGTGCAPFRGFVEERAIQSSS--GPAAPIIFFFGCRNEDDFLYRELWLSHS 240 (340)
Q Consensus 166 G~~v~v~~~~g~F~l-~--~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~--~~~~~~~L~~G~R~~~d~ly~~eL~~~~ 240 (340)
|+.|.+.+|.|.|.+ + +..+|+||||+|||||||+||++++...... ...++++||||+|+.+|++|.+||++|.
T Consensus 135 Gd~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~ 214 (307)
T PLN03116 135 GDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYL 214 (307)
T ss_pred CCEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHH
Confidence 999999999999876 4 3457999999999999999999988764321 0126899999999999999999999998
Q ss_pred hcCC-CccccCCCcEEEEEecCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCC
Q 019521 241 LNDG-VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGE 315 (340)
Q Consensus 241 ~~~g-~l~~~~~~~~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~ 315 (340)
+.++ ++ +++.++||++. .++||++.+.+..+.++..+.+++.+|+|||+ .|++++.+.|.+++.+. |
T Consensus 215 ~~~~~~~------~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp~-~mv~~v~~~L~~~~~~~-g 286 (307)
T PLN03116 215 KDYPDNF------RYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLK-GMMPGIQDTLKRVAEER-G 286 (307)
T ss_pred HhCCCcE------EEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCCH-HHHHHHHHHHHHHHHHc-C
Confidence 8754 68 89999999754 36799999988777766655557899999998 99999999999987765 4
Q ss_pred CCHHHHHHHHHHHHHCCCEEEeec
Q 019521 316 ASRDSAANWLKALQRAGRYHVEAW 339 (340)
Q Consensus 316 ~~~~~a~~~~~~l~~~~R~~~d~w 339 (340)
+ +|++.+..|+++|||++|+|
T Consensus 287 ~---~~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 287 E---SWEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred c---cHHHHHHHHHHcCceEEecC
Confidence 4 36689999999999999999
No 17
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=1e-37 Score=285.81 Aligned_cols=210 Identities=30% Similarity=0.407 Sum_probs=177.6
Q ss_pred CCCHHHHHHhcCC-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecC-CC
Q 019521 102 QMPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG-SL 178 (340)
Q Consensus 102 ~~p~~~l~~~lp~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g-~F 178 (340)
..||||+...++. ..+|+|||||+|. ++.++|+|+.+... ..+.|.+|+||++ +++ |+.|.+.+|.| .|
T Consensus 32 f~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~~----~~~~G~~S~~L~~~~~~--Gd~v~i~gp~gg~F 103 (245)
T cd06200 32 WQAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRHA----DGGLGLGSGWLTRHAPI--GASVALRLRENPGF 103 (245)
T ss_pred ccCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEeccC----CCCCeeechhhhhCCCC--CCEEEEEecCCCcc
Confidence 3689998777664 6789999999984 47899999876321 1235999999986 589 99999999765 78
Q ss_pred CCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521 179 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVA 257 (340)
Q Consensus 179 ~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a 257 (340)
.+++..+|+||||+|||||||+||++++..... ++++||||+|+.+ |++|.+||++|.+...++ +++++
T Consensus 104 ~~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~----~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~------~~~~~ 173 (245)
T cd06200 104 HLPDDGRPLILIGNGTGLAGLRSHLRARARAGR----HRNWLLFGERQAAHDFFCREELEAWQAAGHLA------RLDLA 173 (245)
T ss_pred cCCCCCCCEEEEecCcChHHHHHHHHHHHhccC----CCeEEEEecCCccccHhHHHHHHHHHHCCCcc------eEEEE
Confidence 887556899999999999999999999886532 5799999999996 999999999998874555 88999
Q ss_pred EecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEe
Q 019521 258 FSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVE 337 (340)
Q Consensus 258 ~Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d 337 (340)
+|+++..++||++.+.+..+.+++++..++.||+|||+++|++++++.|.+++++. .+++|+++|||.+|
T Consensus 174 ~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~~~l~~~~~~~----------~~~~~~~~~r~~~d 243 (245)
T cd06200 174 FSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQGMAPGVDAVLDEILGEE----------AVEALLAAGRYRRD 243 (245)
T ss_pred EccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECCchhhhHHHHHHHHHHHHHH----------HHHHHHHCCCeEEe
Confidence 99987778999999998877777666567899999997789999999999999852 38899999999999
Q ss_pred ec
Q 019521 338 AW 339 (340)
Q Consensus 338 ~w 339 (340)
+|
T Consensus 244 ~~ 245 (245)
T cd06200 244 VY 245 (245)
T ss_pred cC
Confidence 99
No 18
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=1.4e-36 Score=297.12 Aligned_cols=222 Identities=26% Similarity=0.387 Sum_probs=183.4
Q ss_pred CCCHHHHHHhcCC-------CCcceeecCCCCCCC---CCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEE
Q 019521 102 QMPIDWLVQLVPP-------LKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPA 171 (340)
Q Consensus 102 ~~p~~~l~~~lp~-------~~pR~YSIaS~p~~~---~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v 171 (340)
..||||+...+|. ..+|+|||+|+|... .+.++|+|+++.. +..+....|.+|+||+++++ ||+|.+
T Consensus 176 ~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~--Gd~v~v 252 (411)
T TIGR03224 176 VLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKK--GDKVQV 252 (411)
T ss_pred ccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCC--cCEEEE
Confidence 4789998887764 247999999987321 1479999998864 23455668999999999999 999999
Q ss_pred EeecCC-CCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCcccc
Q 019521 172 WFQKGS-LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEA 249 (340)
Q Consensus 172 ~~~~g~-F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~ 249 (340)
.+|.|. |.++ ...+|+||||+|||||||+||++++......+..++++||||+|+.+|++|.+||+++.+. .+
T Consensus 253 ~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~--~~--- 327 (411)
T TIGR03224 253 IGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKD--FI--- 327 (411)
T ss_pred EeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcCCCCCEEEEEecCccccchHHHHHHHHHhc--Cc---
Confidence 999996 6666 4568999999999999999999998764221123799999999999999999999999865 35
Q ss_pred CCCcEEEEEecCCC-CccchhhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 019521 250 KGGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKA 327 (340)
Q Consensus 250 ~~~~~~~a~Sr~~~-~~~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 327 (340)
++++++||++. .++|||+.+.+..+.+++++.. ++.||+|||+ +|.+++.+.|.++..+. +++ +++++++
T Consensus 328 ---~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp~-~M~~~v~~~L~~~~~~~-~~~---~~~~~~~ 399 (411)
T TIGR03224 328 ---DINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGLK-GMEEGVLDAFRDVCATN-GLS---WETLEPR 399 (411)
T ss_pred ---eEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECCH-HHHHHHHHHHHHHHHHc-CcC---HHHHHHH
Confidence 67779998654 5899999999888888877754 6899999998 99999999999998765 333 5779999
Q ss_pred HHHCCCEEEeec
Q 019521 328 LQRAGRYHVEAW 339 (340)
Q Consensus 328 l~~~~R~~~d~w 339 (340)
|+++|||+.|+|
T Consensus 400 l~~~~r~~~e~~ 411 (411)
T TIGR03224 400 LRAEGRLHLETY 411 (411)
T ss_pred HHHCCCeEEecC
Confidence 999999999999
No 19
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=4.3e-35 Score=274.68 Aligned_cols=202 Identities=33% Similarity=0.510 Sum_probs=170.8
Q ss_pred CCHHHHHHhcCC-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEe-ecCCCCC
Q 019521 103 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF-QKGSLPR 180 (340)
Q Consensus 103 ~p~~~l~~~lp~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~-~~g~F~l 180 (340)
.|||++....+. ..+|+|||+|+|. .+.++|+|+. .+.|.+|+||.++++ |+.|.+.+ +.|.|.+
T Consensus 85 ~pGQ~v~v~~~g~~~~R~YSias~p~--~g~l~l~Vk~---------~~~G~~S~~L~~l~~--Gd~v~v~~~~~g~F~~ 151 (289)
T cd06201 85 EAGDLLGILPPGSDVPRFYSLASSSS--DGFLEICVRK---------HPGGLCSGYLHGLKP--GDTIKAFIRPNPSFRP 151 (289)
T ss_pred CccCEEEEecCCCCCCceEecCCCCC--CCeEEEEEEe---------CCCccchhhHhhCCC--cCEEEEEeccCCCccC
Confidence 588987665554 3579999999984 4789999853 467999999999999 99999986 5778988
Q ss_pred CCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521 181 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 181 ~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S 259 (340)
+...+|+||||+|||||||+||+++... . .+++||||+|+++ |++|++||++|.+.+.++ +++.++|
T Consensus 152 ~~~~~~lvlIAgGtGIaP~~s~l~~~~~---~---~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~------~~~~~~s 219 (289)
T cd06201 152 AKGAAPVILIGAGTGIAPLAGFIRANAA---R---RPMHLYWGGRDPASDFLYEDELDQYLADGRLT------QLHTAFS 219 (289)
T ss_pred CCCCCCEEEEecCcCHHHHHHHHHhhhc---c---CCEEEEEEecCcccchHHHHHHHHHHHcCCCc------eEEEEEC
Confidence 7556899999999999999999998632 2 6899999999996 999999999998874455 7888999
Q ss_pred cCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 019521 260 RKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339 (340)
Q Consensus 260 r~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~w 339 (340)
|+.. ++|||+.+....+.+.+.+.+++.||+|||+ .|++++.+.|.+|+.+++ ++ +.+|+++|||.+|+|
T Consensus 220 ~~~~-~g~v~~~l~~~~~~l~~~~~~~~~vyiCGp~-~M~~~v~~~L~~i~~~~~-~~-------~~~~~~~g~~~~d~y 289 (289)
T cd06201 220 RTPD-GAYVQDRLRADAERLRRLIEDGAQIMVCGSR-AMAQGVAAVLEEILAPQP-LS-------LDELKLQGRYAEDVY 289 (289)
T ss_pred CCCC-cccchhHHHHhHHHHHHHHHCCcEEEEECCH-HHHHHHHHHHHHHHHHcC-cC-------HHHHHHCCCEEeecC
Confidence 8754 7899999888777777667678999999998 999999999999998753 22 788899999999998
No 20
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=99.97 E-value=3.6e-31 Score=238.60 Aligned_cols=136 Identities=51% Similarity=0.821 Sum_probs=119.6
Q ss_pred CCCCCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCC
Q 019521 21 IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPS 100 (340)
Q Consensus 21 ~~~~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps 100 (340)
..+.++|.++||+++|++|+||++ +|++.||+.||.||+|+.+|++|++|++.+|.++|.+|+.+.+++++|+|.+||+
T Consensus 84 ~~~~~~~~~~tl~~~l~~~~Di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~dil~~fps 162 (219)
T PF00667_consen 84 SVKPPFPSPITLRDLLTHYLDITS-PPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDILEDFPS 162 (219)
T ss_dssp SCCSSSSSSEEHHHHHHHTB-TSS-B--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHHHHHSTT
T ss_pred ccccccccceeeeeeeeeeeeccc-ccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHHHhhCcc
Confidence 346789999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccc
Q 019521 101 VQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW 157 (340)
Q Consensus 101 ~~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~ 157 (340)
+++|+++|++.+|+++||+|||||+|..+++.++|+|++|+|.+..++.+.|+||+|
T Consensus 163 ~~~pl~~ll~~lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 163 CKPPLEELLELLPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp BTC-HHHHHHHS-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred cCCCHHHhhhhCCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999999999999999999999999999999998999999999987
No 21
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.96 E-value=5.6e-29 Score=223.51 Aligned_cols=186 Identities=26% Similarity=0.389 Sum_probs=148.6
Q ss_pred CCCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCC
Q 019521 102 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 178 (340)
Q Consensus 102 ~~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F 178 (340)
..||||+...+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.++++ |+.|.+.+|.|.|
T Consensus 23 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~---------~~G~~s~~l~~~~~--G~~v~i~gP~G~~ 90 (223)
T cd00322 23 FKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIV---------PGGPFSAWLHDLKP--GDEVEVSGPGGDF 90 (223)
T ss_pred cCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEe---------CCCchhhHHhcCCC--CCEEEEECCCccc
Confidence 3699999988875 67999999999853 47899999654 46999999999999 9999999999998
Q ss_pred CCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521 179 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 257 (340)
Q Consensus 179 ~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a 257 (340)
.++ ...++++|||+||||||++++++++...... ++++|+||+|+.+|++|.+||+++.+.+.++ +++++
T Consensus 91 ~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~ 161 (223)
T cd00322 91 FLPLEESGPVVLIAGGIGITPFRSMLRHLAADKPG---GEITLLYGARTPADLLFLDELEELAKEGPNF------RLVLA 161 (223)
T ss_pred ccCcccCCcEEEEecCCchhHHHHHHHHHHhhCCC---CcEEEEEecCCHHHhhHHHHHHHHHHhCCCe------EEEEE
Confidence 765 6678999999999999999999999876544 7899999999999999999999999865677 88999
Q ss_pred EecCCCCccchhhhHHHhHHHHHHhh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 258 FSRKQPQKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 258 ~Sr~~~~~~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
++++.....+.+..+........... ..+..+|+|||+ .|++.+++.|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp~-~m~~~~~~~L~~~ 213 (223)
T cd00322 162 LSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGPP-AMAKAVREALVSL 213 (223)
T ss_pred ecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 99876543333322211111111111 237899999999 9999998888764
No 22
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.96 E-value=5.7e-29 Score=228.38 Aligned_cols=185 Identities=16% Similarity=0.170 Sum_probs=144.5
Q ss_pred CCCHHHHHHhcC--C-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeec-CC
Q 019521 102 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQK-GS 177 (340)
Q Consensus 102 ~~p~~~l~~~lp--~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~-g~ 177 (340)
..||||+...++ . ...|+|||+|+|. .+.++|+|+.+ +.|.+|+||.++++ |++|.+.+|. |.
T Consensus 31 ~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~---------~~G~~S~~L~~l~~--Gd~v~i~gp~~g~ 97 (248)
T PRK10926 31 FTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTV---------PEGKLSPRLAALKP--GDEVQVVSEAAGF 97 (248)
T ss_pred CCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEe---------CCCCcChHHHhCCC--CCEEEEecCCCcc
Confidence 368999877663 2 2469999999984 35799998653 57999999999999 9999999986 45
Q ss_pred CCCC-C-CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcC-CCccccCCCcE
Q 019521 178 LPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGF 254 (340)
Q Consensus 178 F~l~-~-~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~-g~l~~~~~~~~ 254 (340)
|.++ . ..+|++|||+|||||||+||++++...... .+++|+||+|+.+|++|++||+++.+.+ .++ ++
T Consensus 98 f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~~---~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~------~v 168 (248)
T PRK10926 98 FVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLERF---KNLVLVHAARYAADLSYLPLMQELEQRYEGKL------RI 168 (248)
T ss_pred eEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCCC---CcEEEEEeCCcHHHHHHHHHHHHHHHhCcCCE------EE
Confidence 6665 3 347999999999999999999998755443 7899999999999999999999998764 378 89
Q ss_pred EEEEecCCC---CccchhhhHHHh-HHHHHH-hh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 255 YVAFSRKQP---QKVYVQHKMLEQ-SQRIWN-LL-LSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 255 ~~a~Sr~~~---~~~yVqd~l~~~-~~~l~~-~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
..++||++. .+++|++.+.+. ...... .+ .++..+|+|||+ +|++++.+.|.+.
T Consensus 169 ~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~-~Mv~~~~~~l~~~ 228 (248)
T PRK10926 169 QTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNP-QMVRDTQQLLKET 228 (248)
T ss_pred EEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCH-HHHHHHHHHHHHh
Confidence 999998653 257787766432 112111 11 236899999999 9999998877653
No 23
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.96 E-value=6.6e-29 Score=224.30 Aligned_cols=181 Identities=26% Similarity=0.348 Sum_probs=150.4
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCCCCC
Q 019521 102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR 180 (340)
Q Consensus 102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~l 180 (340)
..||||+...+|....|+|||+|.|. ..+.++|+|+. ...|.+|++|. .+++ |++|.+.+|.|.|.+
T Consensus 26 ~~pGQ~v~l~~~~~~~r~ySi~s~~~-~~~~l~~~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~ 93 (224)
T cd06189 26 FLAGQYLDLLLDDGDKRPFSIASAPH-EDGEIELHIRA---------VPGGSFSDYVFEELKE--NGLVRIEGPLGDFFL 93 (224)
T ss_pred cCCCCEEEEEcCCCCceeeecccCCC-CCCeEEEEEEe---------cCCCccHHHHHHhccC--CCEEEEecCCccEEe
Confidence 47999998888877899999999985 35789999854 35699999997 5999 999999999999888
Q ss_pred C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521 181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S 259 (340)
+ ...++++|||+|||||||++++++....... .+++|+||+|+.+|++|.+||+++.+.+.++ +++.++|
T Consensus 94 ~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s 164 (224)
T cd06189 94 REDSDRPLILIAGGTGFAPIKSILEHLLAQGSK---RPIHLYWGARTEEDLYLDELLEAWAEAHPNF------TYVPVLS 164 (224)
T ss_pred ccCCCCCEEEEecCcCHHHHHHHHHHHHhcCCC---CCEEEEEecCChhhccCHHHHHHHHHhCCCe------EEEEEeC
Confidence 7 5578999999999999999999999876544 7899999999999999999999998865778 8888898
Q ss_pred cCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 260 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 260 r~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
++++ .++|+++.+.+... -..+..+|+|||+ .|++++.+.|.+.
T Consensus 165 ~~~~~~~g~~g~v~~~l~~~~~-----~~~~~~v~vCGp~-~m~~~~~~~l~~~ 212 (224)
T cd06189 165 EPEEGWQGRTGLVHEAVLEDFP-----DLSDFDVYACGSP-EMVYAARDDFVEK 212 (224)
T ss_pred CCCcCCccccccHHHHHHhhcc-----CccccEEEEECCH-HHHHHHHHHHHHc
Confidence 8643 45788876654311 0136789999999 9999998888654
No 24
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.96 E-value=1.3e-28 Score=230.24 Aligned_cols=179 Identities=21% Similarity=0.352 Sum_probs=140.9
Q ss_pred cceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCcch
Q 019521 117 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGC 196 (340)
Q Consensus 117 pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~~~~~pii~Ia~GtGI 196 (340)
.|+|||+|+|. ..+.++|+|++........+...|.+|+||.++++ |++|.+.+|.|.|.+++..+|+||||+||||
T Consensus 86 ~R~ySias~p~-~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~l~~~~~~~vlIAgGtGI 162 (283)
T cd06188 86 SRAYSLANYPA-EEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKP--GDKVTASGPFGEFFIKDTDREMVFIGGGAGM 162 (283)
T ss_pred ccccCcCCCCC-CCCeEEEEEEEeccCCccCCCCCceehhHHhcCCC--CCEEEEECccccccccCCCCcEEEEEecccH
Confidence 49999999985 35789999976533221113457999999999999 9999999999999887556899999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCC------Cccchhh
Q 019521 197 APFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYVQH 270 (340)
Q Consensus 197 APf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~~~yVqd 270 (340)
|||++|++++...... ..+++||||+|+.+|++|.+||+++.+.+.++ ++++++|++.. .++||++
T Consensus 163 tP~~s~l~~~~~~~~~--~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~~~~G~v~~ 234 (283)
T cd06188 163 APLRSHIFHLLKTLKS--KRKISFWYGARSLKELFYQEEFEALEKEFPNF------KYHPVLSEPQPEDNWDGYTGFIHQ 234 (283)
T ss_pred hHHHHHHHHHHhcCCC--CceEEEEEecCCHHHhhHHHHHHHHHHHCCCe------EEEEEECCCCccCCCCCcceeecH
Confidence 9999999998764321 16899999999999999999999998765778 88888887541 3578888
Q ss_pred hHHHhHHHHHHhh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 271 KMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 271 ~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
.+.+.. +.... ..+..+|+|||+ +|++++.+.|.+.
T Consensus 235 ~~~~~~--~~~~~~~~~~~vyiCGP~-~m~~~~~~~l~~~ 271 (283)
T cd06188 235 VLLENY--LKKHPAPEDIEFYLCGPP-PMNSAVIKMLDDL 271 (283)
T ss_pred HHHHHH--hccCCCCCCeEEEEECCH-HHHHHHHHHHHHc
Confidence 765542 11111 125689999998 9999998888764
No 25
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.96 E-value=1.4e-28 Score=224.47 Aligned_cols=203 Identities=21% Similarity=0.298 Sum_probs=158.7
Q ss_pred CCCHHHHHHhcCCC----CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEE-eecC
Q 019521 102 QMPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKG 176 (340)
Q Consensus 102 ~~p~~~l~~~lp~~----~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~-~~~g 176 (340)
..||||+...+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||.++++ |+.|.+. +|.|
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~l~~--Gd~v~v~~gP~G 91 (241)
T cd06195 25 FQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILV---------PDGPLTPRLFKLKP--GDTIYVGKKPTG 91 (241)
T ss_pred cCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEe---------cCCCCchHHhcCCC--CCEEEECcCCCC
Confidence 47899988877643 5799999999854 7899998543 56999999999999 9999999 9999
Q ss_pred CCCCC-C-CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhc-CCCccccCCCc
Q 019521 177 SLPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN-DGVFSEAKGGG 253 (340)
Q Consensus 177 ~F~l~-~-~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~-~g~l~~~~~~~ 253 (340)
.|.++ . ..++++|||+|||||||++++++....... .+++|+||+|+++|++|.+||+++.+. ++++ +
T Consensus 92 ~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~------~ 162 (241)
T cd06195 92 FLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWERF---DKIVLVHGVRYAEELAYQDEIEALAKQYNGKF------R 162 (241)
T ss_pred ceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCCC---CcEEEEEccCCHHHhhhHHHHHHHHhhcCCCE------E
Confidence 99887 4 468999999999999999999998865443 789999999999999999999999875 4678 8
Q ss_pred EEEEEecCCCC---ccchhhhHHH-hHHHHHHh-h-cCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 019521 254 FYVAFSRKQPQ---KVYVQHKMLE-QSQRIWNL-L-LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKA 327 (340)
Q Consensus 254 ~~~a~Sr~~~~---~~yVqd~l~~-~~~~l~~~-l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 327 (340)
++.++|+++.. ++|+++.+.. ......+. . .++..+|+|||+ +|++++.+.|.+..... +..
T Consensus 163 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~-~m~~~~~~~l~~~G~~~-----~~~------ 230 (241)
T cd06195 163 YVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNP-QMIDDTQELLKEKGFSK-----NHR------ 230 (241)
T ss_pred EEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCH-HHHHHHHHHHHHcCCCc-----ccc------
Confidence 88889987653 5788887653 11221111 1 236899999999 99999988887653322 111
Q ss_pred HHHCCCEEEeec
Q 019521 328 LQRAGRYHVEAW 339 (340)
Q Consensus 328 l~~~~R~~~d~w 339 (340)
.+.++++.|.|
T Consensus 231 -~~~~~~~~E~~ 241 (241)
T cd06195 231 -RKPGNITVEKY 241 (241)
T ss_pred -CCCceEEEecC
Confidence 44577877765
No 26
>PRK08051 fre FMN reductase; Validated
Probab=99.96 E-value=1.7e-28 Score=223.03 Aligned_cols=181 Identities=20% Similarity=0.264 Sum_probs=146.4
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccc-ccCCCCCCcEEEEEeecCCCCC
Q 019521 102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQGIYIPAWFQKGSLPR 180 (340)
Q Consensus 102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~~~G~~v~v~~~~g~F~l 180 (340)
..||||+...++....|+|||+|.|. ..+.++|+|+.+ ..|..|.++ .++++ |+.|.+.+|.|.|.+
T Consensus 30 ~~pGQ~v~l~~~~~~~r~ySias~p~-~~~~l~~~v~~~---------~~~~~~~~~~~~l~~--G~~v~v~gP~G~~~~ 97 (232)
T PRK08051 30 FRAGQYLMVVMGEKDKRPFSIASTPR-EKGFIELHIGAS---------ELNLYAMAVMERILK--DGEIEVDIPHGDAWL 97 (232)
T ss_pred cCCCCEEEEEcCCCcceeecccCCCC-CCCcEEEEEEEc---------CCCcchHHHHHHcCC--CCEEEEEcCCCceEc
Confidence 47999998888887889999999984 357899998643 335555555 58999 999999999999877
Q ss_pred C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521 181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S 259 (340)
+ +..+|+||||+||||||+++++++....... .+++|+||+|+.+|.+|.+||+++.+.++++ +++.++|
T Consensus 98 ~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~~---~~v~l~~g~r~~~~~~~~~el~~l~~~~~~~------~~~~~~~ 168 (232)
T PRK08051 98 REESERPLLLIAGGTGFSYARSILLTALAQGPN---RPITLYWGGREEDHLYDLDELEALALKHPNL------HFVPVVE 168 (232)
T ss_pred cCCCCCcEEEEecCcCcchHHHHHHHHHHhCCC---CcEEEEEEeccHHHhhhhHHHHHHHHHCCCc------EEEEEeC
Confidence 6 5568999999999999999999999876544 7899999999999999999999999876778 8888888
Q ss_pred cCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHH-HHH
Q 019521 260 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTF-EEI 309 (340)
Q Consensus 260 r~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L-~~i 309 (340)
++++ .++++++.+.+... + ..+..+|+|||+ +|++++.+.| .+.
T Consensus 169 ~~~~~~~~~~g~v~~~l~~~~~---~--~~~~~vyicGp~-~m~~~v~~~l~~~~ 217 (232)
T PRK08051 169 QPEEGWQGKTGTVLTAVMQDFG---S--LAEYDIYIAGRF-EMAKIARELFCRER 217 (232)
T ss_pred CCCCCcccceeeehHHHHhhcc---C--cccCEEEEECCH-HHHHHHHHHHHHHc
Confidence 7643 36777776643311 0 125689999999 9999998877 554
No 27
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.96 E-value=9.2e-29 Score=236.94 Aligned_cols=180 Identities=21% Similarity=0.311 Sum_probs=149.5
Q ss_pred CCCHHHHHHhcCCCC-cceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCCCC
Q 019521 102 QMPIDWLVQLVPPLK-TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLP 179 (340)
Q Consensus 102 ~~p~~~l~~~lp~~~-pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~ 179 (340)
..||||+...+|+.. .|+|||+|+|. +.+.++|+|+. ...|.+|+||. .+++ |+.|.+.+|.|.|.
T Consensus 137 ~~pGQ~v~l~~~~~~~~R~ySias~p~-~~~~l~~~ik~---------~~~G~~s~~L~~~l~~--G~~v~i~gP~G~f~ 204 (340)
T PRK11872 137 FLPGQYARLQIPGTDDWRSYSFANRPN-ATNQLQFLIRL---------LPDGVMSNYLRERCQV--GDEILFEAPLGAFY 204 (340)
T ss_pred cCCCCEEEEEeCCCCceeecccCCCCC-CCCeEEEEEEE---------CCCCcchhhHhhCCCC--CCEEEEEcCcceeE
Confidence 368999888888654 79999999985 35889999864 35799999996 6999 99999999999998
Q ss_pred CCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521 180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 180 l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S 259 (340)
++...+|+||||+|||||||++|++++...... .+++||||+|+++|++|.+||++|.+.++++ +++.+.|
T Consensus 205 l~~~~~~~vliagGtGiaP~~s~l~~~~~~~~~---~~v~l~~g~r~~~dl~~~~el~~~~~~~~~~------~~~~~~s 275 (340)
T PRK11872 205 LREVERPLVFVAGGTGLSAFLGMLDELAEQGCS---PPVHLYYGVRHAADLCELQRLAAYAERLPNF------RYHPVVS 275 (340)
T ss_pred eCCCCCcEEEEeCCcCccHHHHHHHHHHHcCCC---CcEEEEEecCChHHhccHHHHHHHHHHCCCc------EEEEEEe
Confidence 874458999999999999999999998876544 6899999999999999999999998876888 8888888
Q ss_pred cCCC----CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 260 RKQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 260 r~~~----~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
++++ .+++|++.+.+. .+. .+..+|+|||+ .|++++.+.|.+.
T Consensus 276 ~~~~~~~g~~g~v~~~l~~~------~l~~~~~~vy~CGp~-~mv~~~~~~L~~~ 323 (340)
T PRK11872 276 KASADWQGKRGYIHEHFDKA------QLRDQAFDMYLCGPP-PMVEAVKQWLDEQ 323 (340)
T ss_pred CCCCcCCCceeeccHHHHHh------hcCcCCCEEEEeCCH-HHHHHHHHHHHHc
Confidence 7543 467888776543 122 24689999999 9999998888654
No 28
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.96 E-value=1.7e-28 Score=223.70 Aligned_cols=182 Identities=20% Similarity=0.315 Sum_probs=149.4
Q ss_pred CCCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCCCC
Q 019521 102 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLP 179 (340)
Q Consensus 102 ~~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~ 179 (340)
..||||+...+|.. ..|+|||+|.|.. .+.++|+|+. .+.|.+|+||. .+++ |++|.+.+|.|.|.
T Consensus 36 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~ 103 (238)
T cd06211 36 FQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRL---------VPGGIATTYVHKQLKE--GDELEISGPYGDFF 103 (238)
T ss_pred cCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEE---------CCCCcchhhHhhcCCC--CCEEEEECCccceE
Confidence 47999998888866 6899999999853 5789999854 35799999997 7999 99999999999998
Q ss_pred CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521 180 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258 (340)
Q Consensus 180 l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~ 258 (340)
++ ...+++||||+||||||+++++++....... .+++|+||+|+.+|++|.+||+++.+.+.++ +++.++
T Consensus 104 ~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~ 174 (238)
T cd06211 104 VRDSDQRPIIFIAGGSGLSSPRSMILDLLERGDT---RKITLFFGARTRAELYYLDEFEALEKDHPNF------KYVPAL 174 (238)
T ss_pred ecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCCC---CcEEEEEecCChhhhccHHHHHHHHHhCCCe------EEEEEE
Confidence 77 5558999999999999999999998876544 6899999999999999999999998765678 888889
Q ss_pred ecCCC------CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 259 SRKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 259 Sr~~~------~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
||+.. .++|+++.+.+.... -.++..+|+|||+ .|++++.+.|.+.
T Consensus 175 s~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyvCGp~-~m~~~~~~~L~~~ 226 (238)
T cd06211 175 SREPPESNWKGFTGFVHDAAKKHFKN----DFRGHKAYLCGPP-PMIDACIKTLMQG 226 (238)
T ss_pred CCCCCCcCcccccCcHHHHHHHhccc----ccccCEEEEECCH-HHHHHHHHHHHHc
Confidence 98642 357777765543110 1136799999999 9999998888764
No 29
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.96 E-value=1.7e-28 Score=222.10 Aligned_cols=179 Identities=23% Similarity=0.339 Sum_probs=148.8
Q ss_pred CCCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecCCCC
Q 019521 102 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP 179 (340)
Q Consensus 102 ~~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F~ 179 (340)
..||||+...+|.. ..|+|||+|.|.. +.++|+|+. ...|.+|+||.+ +++ |+.|.+.+|.|.|.
T Consensus 31 ~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~---------~~~G~~s~~l~~~l~~--G~~v~v~gP~G~~~ 97 (228)
T cd06209 31 FLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRL---------LPGGAMSSYLRDRAQP--GDRLTLTGPLGSFY 97 (228)
T ss_pred cCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEE---------cCCCcchhhHHhccCC--CCEEEEECCcccce
Confidence 36899988888765 4899999998854 789999854 357999999987 999 99999999999987
Q ss_pred CCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521 180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 180 l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S 259 (340)
++...++++|||+||||||+++++++....... ++++|+||+|+.+|++|.++|+++.+.++++ +++.++|
T Consensus 98 ~~~~~~~~vlia~GtGIaP~~~ll~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s 168 (228)
T cd06209 98 LREVKRPLLMLAGGTGLAPFLSMLDVLAEDGSA---HPVHLVYGVTRDADLVELDRLEALAERLPGF------SFRTVVA 168 (228)
T ss_pred ecCCCCeEEEEEcccCHhHHHHHHHHHHhcCCC---CcEEEEEecCCHHHhccHHHHHHHHHhCCCe------EEEEEEc
Confidence 764458999999999999999999998876543 7899999999999999999999998766778 8888999
Q ss_pred cCCC---CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 260 RKQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 260 r~~~---~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
++.. .++|+++.+.+. .+. .+..+|+|||+ .|++++++.|.+.
T Consensus 169 ~~~~~~~~~g~v~~~~~~~------~~~~~~~~v~icGp~-~m~~~~~~~l~~~ 215 (228)
T cd06209 169 DPDSWHPRKGYVTDHLEAE------DLNDGDVDVYLCGPP-PMVDAVRSWLDEQ 215 (228)
T ss_pred CCCccCCCcCCccHHHHHh------hccCCCcEEEEeCCH-HHHHHHHHHHHHc
Confidence 8654 456888766553 122 35789999998 9999998888653
No 30
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.96 E-value=1.7e-28 Score=222.58 Aligned_cols=184 Identities=18% Similarity=0.191 Sum_probs=147.9
Q ss_pred CCCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecCCCC
Q 019521 102 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP 179 (340)
Q Consensus 102 ~~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F~ 179 (340)
..||||+...+|.. .+|+|||+|.|.. .+.++|+|+. ...|.+|.||.+ +++ |+.|.+.+|.|.|.
T Consensus 24 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~---------~~~G~~s~~l~~~~~~--g~~v~v~gP~G~~~ 91 (232)
T cd06190 24 FLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKR---------KPGGAASNALFDNLEP--GDELELDGPYGLAY 91 (232)
T ss_pred cCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEE---------cCCCcchHHHhhcCCC--CCEEEEECCcccce
Confidence 47899999988877 7899999998853 5789999854 356999999985 799 99999999999987
Q ss_pred CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521 180 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258 (340)
Q Consensus 180 l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~ 258 (340)
++ +..++++|||+||||||+++++++....... +..+++|+||+|+.+|++|.+||+++.+...++ +++.++
T Consensus 92 ~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~ 164 (232)
T cd06190 92 LRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYL-SDRPVDLFYGGRTPSDLCALDELSALVALGARL------RVTPAV 164 (232)
T ss_pred ecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccC-CCCeEEEEEeecCHHHHhhHHHHHHHHHhCCCE------EEEEEe
Confidence 76 5567999999999999999999998875210 127899999999999999999999998864567 788888
Q ss_pred ecCCC--------CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 259 SRKQP--------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 259 Sr~~~--------~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
|++.. .++++++.+.+.... ...+..||+|||+ .|.+++.+.|.+.
T Consensus 165 s~~~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyiCGp~-~m~~~v~~~l~~~ 218 (232)
T cd06190 165 SDAGSGSAAGWDGPTGFVHEVVEATLGD----RLAEFEFYFAGPP-PMVDAVQRMLMIE 218 (232)
T ss_pred CCCCCCcCCCccCCcCcHHHHHHhhccC----CccccEEEEECCH-HHHHHHHHHHHHh
Confidence 87643 246777665443111 1236899999998 8998888777664
No 31
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.96 E-value=1.6e-28 Score=240.79 Aligned_cols=180 Identities=20% Similarity=0.337 Sum_probs=145.7
Q ss_pred CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCcc
Q 019521 116 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTG 195 (340)
Q Consensus 116 ~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~~~~~pii~Ia~GtG 195 (340)
..|+|||+|.|.. .+.++|+|+++.+....++.+.|.+|+||.++++ ||.|.+.+|.|.|.+++..+|+||||+|||
T Consensus 209 ~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~f~~~~~~~~ivlIAgGtG 285 (409)
T PRK05464 209 VIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGAG 285 (409)
T ss_pred eeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCC--CCEEEEEccccCcEecCCCceEEEEEeccC
Confidence 5799999999853 5789999998766655566778999999999999 999999999999987655689999999999
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCC------Cccchh
Q 019521 196 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYVQ 269 (340)
Q Consensus 196 IAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~~~yVq 269 (340)
||||+||+++....... ..+++||||+|+.+|++|.+||+++.+.++++ ++++++|++.. .+++++
T Consensus 286 IaP~~sml~~~l~~~~~--~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~g~~G~v~ 357 (409)
T PRK05464 286 MAPMRSHIFDQLKRLKS--KRKISFWYGARSLREMFYVEDFDQLAAENPNF------KWHVALSDPLPEDNWTGYTGFIH 357 (409)
T ss_pred hhHHHHHHHHHHhCCCC--CceEEEEEecCCHHHhhHHHHHHHHHHhCCCe------EEEEEEcCCCCCCCCCCccceeC
Confidence 99999999987765322 26899999999999999999999998776888 88888887532 357788
Q ss_pred hhHHHhHHHHHHhh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 270 HKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 270 d~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
+.+.+.. +.+.. ..+..+|+|||+ +|++++.+.|.+.
T Consensus 358 ~~l~~~~--l~~~~~~~~~~vyiCGP~-~m~~av~~~L~~~ 395 (409)
T PRK05464 358 NVLYENY--LKDHEAPEDCEYYMCGPP-MMNAAVIKMLKDL 395 (409)
T ss_pred HHHHHhh--hhhcCCCCCeEEEEECCH-HHHHHHHHHHHHc
Confidence 7765431 11111 136789999998 9999998887654
No 32
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.95 E-value=3e-28 Score=238.18 Aligned_cols=179 Identities=18% Similarity=0.240 Sum_probs=144.2
Q ss_pred CCCHHHHHHhcC--C--C-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeec
Q 019521 102 QMPIDWLVQLVP--P--L-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK 175 (340)
Q Consensus 102 ~~p~~~l~~~lp--~--~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~ 175 (340)
..||||+...++ + . .+|+|||+|+|. .+.++|+|+. ...|.+|+||.+ +++ |+.|.+.+|.
T Consensus 185 ~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~---------~~~G~~S~~L~~~l~~--Gd~v~v~gP~ 251 (399)
T PRK13289 185 FKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKR---------EAGGKVSNYLHDHVNV--GDVLELAAPA 251 (399)
T ss_pred CCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEE---------CCCCeehHHHhhcCCC--CCEEEEEcCc
Confidence 368999888764 2 2 359999999985 3689999853 356999999985 999 9999999999
Q ss_pred CCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcE
Q 019521 176 GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGF 254 (340)
Q Consensus 176 g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~ 254 (340)
|.|.++ ...+|+||||+||||||++||++++...... .+++||||+|+.+|++|++||+++.+.++++ ++
T Consensus 252 G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~eL~~l~~~~~~~------~~ 322 (399)
T PRK13289 252 GDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQPK---RPVHFIHAARNGGVHAFRDEVEALAARHPNL------KA 322 (399)
T ss_pred cccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCCC---CCEEEEEEeCChhhchHHHHHHHHHHhCCCc------EE
Confidence 999987 5678999999999999999999998876544 7899999999999999999999998875688 89
Q ss_pred EEEEecCCCC---------ccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 255 YVAFSRKQPQ---------KVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 255 ~~a~Sr~~~~---------~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
+.++|++... .++++. +.+.+.+. .+..+|+|||+ .|++++.+.|.+.
T Consensus 323 ~~~~s~~~~~~~~~~~~~~~g~i~~------~~l~~~~~~~~~~vyiCGp~-~m~~~v~~~L~~~ 380 (399)
T PRK13289 323 HTWYREPTEQDRAGEDFDSEGLMDL------EWLEAWLPDPDADFYFCGPV-PFMQFVAKQLLEL 380 (399)
T ss_pred EEEECCCccccccCCcccccCcccH------HHHHhhCCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 9999985431 133332 12222332 37899999998 9999998887654
No 33
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.95 E-value=2.3e-28 Score=234.20 Aligned_cols=180 Identities=19% Similarity=0.299 Sum_probs=149.7
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCCCCC
Q 019521 102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR 180 (340)
Q Consensus 102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~l 180 (340)
..||||+...+|....|+|||+|+|.. .+.++|+|+. .+.|.+|+||. .+++ |+.|.+.+|.|.|.+
T Consensus 132 ~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~---------~~~G~~s~~l~~~l~~--G~~v~v~gP~G~~~~ 199 (339)
T PRK07609 132 YLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRH---------MPGGVFTDHVFGALKE--RDILRIEGPLGTFFL 199 (339)
T ss_pred cCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEe---------cCCCccHHHHHHhccC--CCEEEEEcCceeEEe
Confidence 368999988888777899999999853 5789999854 46799999996 6999 999999999999988
Q ss_pred C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521 181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S 259 (340)
+ ...+|+||||+|||||||+||++++...... .+++||||+|+.+|+++.++|++|.+.++++ +++.++|
T Consensus 200 ~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~~---~~i~l~~g~r~~~dl~~~e~l~~~~~~~~~~------~~~~~~s 270 (339)
T PRK07609 200 REDSDKPIVLLASGTGFAPIKSIVEHLRAKGIQ---RPVTLYWGARRPEDLYLSALAEQWAEELPNF------RYVPVVS 270 (339)
T ss_pred cCCCCCCEEEEecCcChhHHHHHHHHHHhcCCC---CcEEEEEecCChHHhccHHHHHHHHHhCCCe------EEEEEec
Confidence 7 5678999999999999999999999876544 7899999999999998899999998765788 8888999
Q ss_pred cCC------CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHH
Q 019521 260 RKQ------PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 308 (340)
Q Consensus 260 r~~------~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 308 (340)
|+. ..++|+++.+.+.... ..+..+|+|||+ .|++.+.+.|.+
T Consensus 271 ~~~~~~~~~g~~G~v~~~~~~~~~~-----~~~~~vy~CGp~-~m~~~~~~~l~~ 319 (339)
T PRK07609 271 DALDDDAWTGRTGFVHQAVLEDFPD-----LSGHQVYACGSP-VMVYAARDDFVA 319 (339)
T ss_pred CCCCCCCccCccCcHHHHHHhhccc-----ccCCEEEEECCH-HHHHHHHHHHHH
Confidence 842 1367888776543111 136789999998 999998888766
No 34
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.95 E-value=2.4e-28 Score=233.43 Aligned_cols=183 Identities=15% Similarity=0.234 Sum_probs=144.6
Q ss_pred CCCHHHHHHhcCC--CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCCC
Q 019521 102 QMPIDWLVQLVPP--LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 178 (340)
Q Consensus 102 ~~p~~~l~~~lp~--~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F 178 (340)
..||||+...++. ...|+|||+|.|.. .+.++|+|+. ...|.+|+||. ++++ |++|.+.+|.|.|
T Consensus 37 f~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~---------~~~G~~S~~L~~~l~~--Gd~v~v~gP~G~f 104 (332)
T PRK10684 37 YRAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRR---------IDDGVGSQWLTRDVKR--GDYLWLSDAMGEF 104 (332)
T ss_pred cCCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEE---------cCCCcchhHHHhcCCC--CCEEEEeCCcccc
Confidence 4699998887764 24699999999853 4679999853 46799999996 7999 9999999999999
Q ss_pred CCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521 179 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 257 (340)
Q Consensus 179 ~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a 257 (340)
.++ ...+++||||+|||||||+||+++....... .+++|+||+|+.+|++|.+||+++.+.++++ ++++.
T Consensus 105 ~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~~---~~v~l~y~~r~~~~~~~~~el~~l~~~~~~~------~~~~~ 175 (332)
T PRK10684 105 TCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQ---ADVQVIFNVRTPQDVIFADEWRQLKQRYPQL------NLTLV 175 (332)
T ss_pred ccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCC---CCEEEEEeCCChHHhhhHHHHHHHHHHCCCe------EEEEE
Confidence 987 5668999999999999999999998765444 7899999999999999999999998876777 77777
Q ss_pred EecCCCCccchhhhHHHhHHHHHHhhc--CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 258 FSRKQPQKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 258 ~Sr~~~~~~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
.+++.. +++.+..+.+. .+.+.+. .+..+|+|||+ +|++.+.+.|.+.
T Consensus 176 ~~~~~~-~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP~-~m~~~v~~~l~~~ 225 (332)
T PRK10684 176 AENNAT-EGFIAGRLTRE--LLQQAVPDLASRTVMTCGPA-PYMDWVEQEVKAL 225 (332)
T ss_pred eccCCC-CCccccccCHH--HHHHhcccccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 665432 34444444321 1112222 26789999998 9999988877664
No 35
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.95 E-value=8e-28 Score=235.59 Aligned_cols=180 Identities=21% Similarity=0.356 Sum_probs=143.0
Q ss_pred CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCcc
Q 019521 116 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTG 195 (340)
Q Consensus 116 ~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~~~~~pii~Ia~GtG 195 (340)
..|+|||+|+|.. .+.++|+|+++.+....++.+.|.+|+||.++++ ||.|.+.+|.|.|.+.+..+|+||||+|||
T Consensus 205 ~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~l~~~~~~lvlIAgGtG 281 (405)
T TIGR01941 205 TVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGAG 281 (405)
T ss_pred cceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCC--cCEEEEEeccCCCeecCCCCCEEEEecCcC
Confidence 4699999999853 5789999988754433334678999999999999 999999999999987655689999999999
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCC------Cccchh
Q 019521 196 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYVQ 269 (340)
Q Consensus 196 IAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~~~yVq 269 (340)
||||++|+++....... ..+++||||+|+++|++|.+||+++.+.++++ ++++++|++.. .+++++
T Consensus 282 IaP~lsmi~~~l~~~~~--~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~g~~G~v~ 353 (405)
T TIGR01941 282 MAPMRSHIFDQLKRLKS--KRKISFWYGARSLREMFYQEDFDQLEAENPNF------VWHVALSDPQPEDNWTGYTGFIH 353 (405)
T ss_pred cchHHHHHHHHHhcCCC--CCeEEEEEecCCHHHHhHHHHHHHHHHhCCCe------EEEEEeCCCCccCCCCCccceeC
Confidence 99999999987764321 26899999999999999999999998776888 88888887532 356787
Q ss_pred hhHHHhHHHHHHhh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 270 HKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 270 d~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
+.+.+.. +.+.. ..+..+|+|||+ +|++++.+.|.+.
T Consensus 354 ~~l~~~~--l~~~~~~~~~~vylCGP~-~m~~av~~~L~~~ 391 (405)
T TIGR01941 354 NVLYENY--LKDHDAPEDCEFYMCGPP-MMNAAVIKMLEDL 391 (405)
T ss_pred HHHHHhh--hcccCCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence 7665331 11111 136789999998 9999998887654
No 36
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.95 E-value=8.5e-28 Score=216.64 Aligned_cols=181 Identities=21% Similarity=0.250 Sum_probs=148.4
Q ss_pred CCCHHHHHHhcCCCC--cceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecCCC
Q 019521 102 QMPIDWLVQLVPPLK--TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSL 178 (340)
Q Consensus 102 ~~p~~~l~~~lp~~~--pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F 178 (340)
..||||+...+|... .|+|||+|.|.+ .+.++|+|+. ...|.+|+||.+ +++ |+.|.+.+|.|.|
T Consensus 24 ~~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~ 91 (224)
T cd06187 24 FWAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRA---------VPGGRVSNALHDELKV--GDRVRLSGPYGTF 91 (224)
T ss_pred cCCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEe---------CCCCcchHHHhhcCcc--CCEEEEeCCccce
Confidence 368999888887654 799999999854 4789999853 246999999987 999 9999999999998
Q ss_pred CCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521 179 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 257 (340)
Q Consensus 179 ~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a 257 (340)
.++ +..++++|||+|||||||+++++++...... .+++|+|++|+.+|++|.++|+.+.+.+.++ ++..+
T Consensus 92 ~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~~~---~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~ 162 (224)
T cd06187 92 YLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRGEP---RPVHLFFGARTERDLYDLEGLLALAARHPWL------RVVPV 162 (224)
T ss_pred EecCCCCCCEEEEecCcCHHHHHHHHHHHHhcCCC---CCEEEEEecCChhhhcChHHHHHHHHhCCCe------EEEEE
Confidence 887 5468999999999999999999998876543 7899999999999999999999998765677 78778
Q ss_pred EecCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 258 FSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 258 ~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
+++++. .++|+++.+.+... -.++..+|+|||+ .|++++++.|++.
T Consensus 163 ~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~v~vcGp~-~~~~~v~~~l~~~ 212 (224)
T cd06187 163 VSHEEGAWTGRRGLVTDVVGRDGP-----DWADHDIYICGPP-AMVDATVDALLAR 212 (224)
T ss_pred eCCCCCccCCCcccHHHHHHHhcc-----ccccCEEEEECCH-HHHHHHHHHHHHc
Confidence 887543 46788877654311 0136899999998 9999988888653
No 37
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.95 E-value=7.4e-28 Score=218.96 Aligned_cols=182 Identities=17% Similarity=0.224 Sum_probs=147.9
Q ss_pred CCCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecCCCC
Q 019521 102 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP 179 (340)
Q Consensus 102 ~~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F~ 179 (340)
..||||+...+|.. .+|+|||+|.|.. .+.++|+|+. ...|.+|+||.+ +++ |+.|.+.+|.|.|.
T Consensus 35 ~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~f~ 102 (236)
T cd06210 35 FVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRL---------LPGGAFSTYLETRAKV--GQRLNLRGPLGAFG 102 (236)
T ss_pred cCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEE---------cCCCccchhhhhCcCC--CCEEEEecCcceee
Confidence 46899998877753 5899999999853 4789999854 346999999986 999 99999999999998
Q ss_pred CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521 180 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258 (340)
Q Consensus 180 l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~ 258 (340)
++ ...++++|||+||||||++++++++...... .+++||||+|+.+|.+|.++|+++.+.++++ +++.++
T Consensus 103 l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~ 173 (236)
T cd06210 103 LRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGEP---QEARLFFGVNTEAELFYLDELKRLADSLPNL------TVRICV 173 (236)
T ss_pred ecCCCCccEEEEccCcchhHHHHHHHHHHhcCCC---ceEEEEEecCCHHHhhhHHHHHHHHHhCCCe------EEEEEE
Confidence 87 5567999999999999999999998876544 7899999999999999999999999776788 888898
Q ss_pred ecCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 259 SRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 259 Sr~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
||+.. ..+++++.+.+.... ......+|+|||+ .|++++++.|.+.
T Consensus 174 s~~~~~~~~~~g~~~~~l~~~l~~----~~~~~~vyicGp~-~m~~~~~~~l~~~ 223 (236)
T cd06210 174 WRPGGEWEGYRGTVVDALREDLAS----SDAKPDIYLCGPP-GMVDAAFAAAREA 223 (236)
T ss_pred cCCCCCcCCccCcHHHHHHHhhcc----cCCCcEEEEeCCH-HHHHHHHHHHHHc
Confidence 87543 356776655433111 1235789999998 9999998888753
No 38
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.95 E-value=1e-27 Score=224.85 Aligned_cols=179 Identities=18% Similarity=0.209 Sum_probs=143.0
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC-CCC
Q 019521 102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 180 (340)
Q Consensus 102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F~l 180 (340)
..||||+...+|....|+|||+|+|. ..+.++|+|+. .|.+|+||.++++ |+.|.+.+|.|. |.+
T Consensus 38 ~~pGQ~v~l~~~~~~~~pySias~p~-~~~~l~l~Ik~-----------~G~~S~~L~~l~~--Gd~v~v~gP~G~~f~~ 103 (289)
T PRK08345 38 FKPGQFVQVTIPGVGEVPISICSSPT-RKGFFELCIRR-----------AGRVTTVIHRLKE--GDIVGVRGPYGNGFPV 103 (289)
T ss_pred cCCCCEEEEEcCCCCceeeEecCCCC-CCCEEEEEEEe-----------CChHHHHHHhCCC--CCEEEEeCCCCCCCCc
Confidence 36999998888876679999999985 35789999853 3899999999999 999999999997 666
Q ss_pred C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521 181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S 259 (340)
+ ...+|++|||+|||||||++|++++...... ..+++|+||+|+.+|++|++||+++.+.++++ +++.++|
T Consensus 104 ~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~--~~~v~l~~~~r~~~d~~~~deL~~l~~~~~~~------~~~~~~s 175 (289)
T PRK08345 104 DEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWK--YGNITLIYGAKYYEDLLFYDELIKDLAEAENV------KIIQSVT 175 (289)
T ss_pred ccccCceEEEEecccchhHHHHHHHHHHhcCCC--CCcEEEEEecCCHHHhhHHHHHHHHHhcCCCE------EEEEEec
Confidence 5 4457999999999999999999998875421 27899999999999999999999997765788 8888899
Q ss_pred cCCCC---------------ccchhhhHHHhHHHHHHhh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 260 RKQPQ---------------KVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 260 r~~~~---------------~~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
+++.. ++++++.+.+. .. .++..+|+|||+ .|++++.+.|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP~-~m~~~v~~~L~~~ 234 (289)
T PRK08345 176 RDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGPP-VMYKFVFKELINR 234 (289)
T ss_pred CCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECCH-HHHHHHHHHHHHc
Confidence 85432 23333333221 11 125789999999 9999998888764
No 39
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.95 E-value=9.1e-28 Score=217.89 Aligned_cols=181 Identities=24% Similarity=0.381 Sum_probs=147.4
Q ss_pred CCCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecCCCC
Q 019521 102 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP 179 (340)
Q Consensus 102 ~~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F~ 179 (340)
..||||+...+|.. ..|+|||+|.|.. .+.++|+|+. ...|.+|+||.+ +++ |++|.+.+|.|.|.
T Consensus 30 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~ 97 (232)
T cd06212 30 FFAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKK---------YPGGLFSSFLDDGLAV--GDPVTVTGPYGTCT 97 (232)
T ss_pred cCCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEE---------CCCCchhhHHhhcCCC--CCEEEEEcCcccce
Confidence 36999988888754 6899999999853 4789999854 357999999985 999 99999999999998
Q ss_pred CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521 180 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258 (340)
Q Consensus 180 l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~ 258 (340)
++ ...+++||||+||||||+++++++....... .+++|+||+|+.+|++|.+||+++.+.+.++ ++..++
T Consensus 98 ~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~ 168 (232)
T cd06212 98 LRESRDRPIVLIGGGSGMAPLLSLLRDMAASGSD---RPVRFFYGARTARDLFYLEEIAALGEKIPDF------TFIPAL 168 (232)
T ss_pred ecCCCCCcEEEEecCcchhHHHHHHHHHHhcCCC---CcEEEEEeccchHHhccHHHHHHHHHhCCCE------EEEEEE
Confidence 77 5568999999999999999999999876544 7899999999999999999999998765778 788888
Q ss_pred ecCCC------CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 259 SRKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 259 Sr~~~------~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
|++.. ..+++++.+.+.... + ++..+|+|||+ .|++++.+.|.+.
T Consensus 169 s~~~~~~~~~~~~g~~~~~~~~~~~~----~-~~~~v~~CGp~-~~~~~v~~~l~~~ 219 (232)
T cd06212 169 SESPDDEGWSGETGLVTEVVQRNEAT----L-AGCDVYLCGPP-PMIDAALPVLEMS 219 (232)
T ss_pred CCCCCCCCCcCCcccHHHHHHhhccC----c-cCCEEEEECCH-HHHHHHHHHHHHc
Confidence 88542 246776655432111 1 36789999999 9999988877654
No 40
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.95 E-value=9.5e-28 Score=217.65 Aligned_cols=178 Identities=17% Similarity=0.308 Sum_probs=142.8
Q ss_pred CCCHHHHHHhcC--C-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCC
Q 019521 102 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS 177 (340)
Q Consensus 102 ~~p~~~l~~~lp--~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~ 177 (340)
..||||+...++ . ..+|+|||+|.|. .+.++|+|+. ...|.+|+||. ++++ |+.|.+.+|.|.
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~ 94 (231)
T cd06191 28 FRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKR---------VPGGRVSNYLREHIQP--GMTVEVMGPQGH 94 (231)
T ss_pred CCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEE---------CCCCccchHHHhcCCC--CCEEEEeCCccc
Confidence 369999887764 2 3579999999985 5889999854 35699999998 6999 999999999999
Q ss_pred CCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521 178 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 256 (340)
Q Consensus 178 F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~ 256 (340)
|.++ ....+++|||+||||||+++++++....... .++.|+||+|+++|++|.+||+++.+.++++ +++.
T Consensus 95 f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~ 165 (231)
T cd06191 95 FVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAPE---SDFTLIHSARTPADMIFAQELRELADKPQRL------RLLC 165 (231)
T ss_pred eEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCCC---CCEEEEEecCCHHHHhHHHHHHHHHHhCCCe------EEEE
Confidence 9887 5568999999999999999999998876444 7899999999999999999999998765788 8999
Q ss_pred EEecCCCC------ccchhhhHHHhHHHHHHhhc--CCCEEEEeCCCCccHHHHHHHHHH
Q 019521 257 AFSRKQPQ------KVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEE 308 (340)
Q Consensus 257 a~Sr~~~~------~~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~ 308 (340)
++||+... ++++.+.+.+. ++. .+..+|+|||+ .|++++++.|.+
T Consensus 166 ~~s~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~vyicGp~-~mv~~~~~~l~~ 218 (231)
T cd06191 166 IFTRETLDSDLLHGRIDGEQSLGAA------LIPDRLEREAFICGPA-GMMDAVETALKE 218 (231)
T ss_pred EECCCCCCccccCCcccccHHHHHH------hCccccCCeEEEECCH-HHHHHHHHHHHH
Confidence 99986432 23333322221 222 25799999999 999998887755
No 41
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.95 E-value=2.2e-27 Score=214.74 Aligned_cols=178 Identities=20% Similarity=0.338 Sum_probs=145.0
Q ss_pred CCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCCCCC
Q 019521 103 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR 180 (340)
Q Consensus 103 ~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~l 180 (340)
.||||+...+|.. ..|+|||+|+|.. .+.++|+|+. ...|.+|+||. .+++ |+.|.+.+|.|.|.+
T Consensus 29 ~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~ 96 (227)
T cd06213 29 KAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRK---------VPGGAFSGWLFGADRT--GERLTVRGPFGDFWL 96 (227)
T ss_pred CCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEE---------CCCCcchHHHHhcCCC--CCEEEEeCCCcceEe
Confidence 5899988887765 4899999999853 5789999854 35699999995 6899 999999999999988
Q ss_pred CCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhc-CCCccccCCCcEEEEEe
Q 019521 181 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN-DGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 181 ~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~-~g~l~~~~~~~~~~a~S 259 (340)
++..+++||||+|||||||+++++++...... .+++++||+|+++|.+|.+||+++.+. ..++ +++.++|
T Consensus 97 ~~~~~~~lliagG~GiaP~~~~~~~~~~~~~~---~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~~------~~~~~~s 167 (227)
T cd06213 97 RPGDAPILCIAGGSGLAPILAILEQARAAGTK---RDVTLLFGARTQRDLYALDEIAAIAARWRGRF------RFIPVLS 167 (227)
T ss_pred CCCCCcEEEEecccchhHHHHHHHHHHhcCCC---CcEEEEEeeCCHHHhccHHHHHHHHHhccCCe------EEEEEec
Confidence 74457999999999999999999999876544 689999999999999999999999864 2567 7888888
Q ss_pred cCCC------CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 260 RKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 260 r~~~------~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
++.. .++++++.+.+. +..+..+|+|||+ .|++++++.|.+.
T Consensus 168 ~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp~-~~~~~~~~~l~~~ 215 (227)
T cd06213 168 EEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGPP-AMIDAAIAVLRAL 215 (227)
T ss_pred CCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 7642 235776655432 2347899999998 9999988887663
No 42
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.95 E-value=5.9e-27 Score=211.10 Aligned_cols=181 Identities=21% Similarity=0.257 Sum_probs=144.3
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecCCCCC
Q 019521 102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPR 180 (340)
Q Consensus 102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F~l 180 (340)
..||||+...+|....|+|||+|+|.. .+.++|+|+. ...|.+|.||.+ +++ |+.|.+.+|.|.|.+
T Consensus 24 ~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~~~~ 91 (222)
T cd06194 24 YLPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRR---------KPNGAFSGWLGEEARP--GHALRLQGPFGQAFY 91 (222)
T ss_pred cCCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEe---------ccCCccchHHHhccCC--CCEEEEecCcCCeec
Confidence 368999988888878899999999854 3789999853 356999999987 699 999999999998766
Q ss_pred C--CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521 181 P--PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258 (340)
Q Consensus 181 ~--~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~ 258 (340)
. ...++++|||+||||||++++++++...... .+++|+||+|+.+|++|.+||+++.+.++++ +++.+.
T Consensus 92 ~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~ 162 (222)
T cd06194 92 RPEYGEGPLLLVGAGTGLAPLWGIARAALRQGHQ---GEIRLVHGARDPDDLYLHPALLWLAREHPNF------RYIPCV 162 (222)
T ss_pred cCCCCCCCEEEEecCcchhhHHHHHHHHHhcCCC---ccEEEEEecCChhhccCHHHHHHHHHHCCCe------EEEEEE
Confidence 4 5567999999999999999999998876544 7899999999999999999999998755778 888888
Q ss_pred ecCCCCc-c-chhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 259 SRKQPQK-V-YVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 259 Sr~~~~~-~-yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
++++... + ++.+ +.+. +. ...++..+|+|||+ .|++++++.|.+.
T Consensus 163 ~~~~~~~~~~~~~~-~~~~---~~-~~~~~~~vyicGp~-~m~~~~~~~L~~~ 209 (222)
T cd06194 163 SEGSQGDPRVRAGR-IAAH---LP-PLTRDDVVYLCGAP-SMVNAVRRRAFLA 209 (222)
T ss_pred ccCCCCCcccccch-hhhh---hc-cccCCCEEEEeCCH-HHHHHHHHHHHHc
Confidence 8865432 1 1221 1111 11 12347899999998 9999998888764
No 43
>PRK05713 hypothetical protein; Provisional
Probab=99.94 E-value=4.8e-27 Score=222.58 Aligned_cols=175 Identities=18% Similarity=0.165 Sum_probs=139.8
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecC-CCCC
Q 019521 102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLPR 180 (340)
Q Consensus 102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g-~F~l 180 (340)
..||||+...++....|+|||+|.|.. .+.++|+|+. ...|.+|.||.++++ |++|.+.+|.| .|.+
T Consensus 119 ~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~---------~~~G~~s~~l~~l~~--Gd~v~l~~p~gg~~~~ 186 (312)
T PRK05713 119 YRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDC---------SRPGAFCDAARQLQV--GDLLRLGELRGGALHY 186 (312)
T ss_pred cCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEE---------cCCCccchhhhcCCC--CCEEEEccCCCCceEe
Confidence 368999887777667899999999853 5789999854 357999999999999 99999999987 4555
Q ss_pred C-C-CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521 181 P-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258 (340)
Q Consensus 181 ~-~-~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~ 258 (340)
+ + ..+|+||||||||||||+||+++....... .+++|+||+|+.+|++|.+||++|.+.++++ ++..+.
T Consensus 187 ~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~---~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~ 257 (312)
T PRK05713 187 DPDWQERPLWLLAAGTGLAPLWGILREALRQGHQ---GPIRLLHLARDSAGHYLAEPLAALAGRHPQL------SVELVT 257 (312)
T ss_pred cCCCCCCcEEEEecCcChhHHHHHHHHHHhcCCC---CcEEEEEEcCchHHhhhHHHHHHHHHHCCCc------EEEEEE
Confidence 5 3 568999999999999999999998876544 7899999999999999999999998766788 777666
Q ss_pred ecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 259 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 259 Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
++ ++++.+.+. . ....+..+|+|||+ +|++++.+.|.+.
T Consensus 258 ~~------~~~~~l~~~----~-~~~~~~~vyiCGp~-~mv~~~~~~L~~~ 296 (312)
T PRK05713 258 AA------QLPAALAEL----R-LVSRQTMALLCGSP-ASVERFARRLYLA 296 (312)
T ss_pred Cc------chhhhhhhc----c-CCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence 53 244433221 0 01235789999999 9999998888653
No 44
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.94 E-value=1e-26 Score=213.01 Aligned_cols=179 Identities=20% Similarity=0.314 Sum_probs=143.4
Q ss_pred CCCHHHHHHhcC--C---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeec
Q 019521 102 QMPIDWLVQLVP--P---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK 175 (340)
Q Consensus 102 ~~p~~~l~~~lp--~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~ 175 (340)
..||||+...++ . ...|+|||+|.|.. +.++|+|+. ...|.+|+||.+ +++ |++|.+.+|.
T Consensus 37 ~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~ 103 (247)
T cd06184 37 FLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKR---------EPGGLVSNYLHDNVKV--GDVLEVSAPA 103 (247)
T ss_pred CCCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCC
Confidence 468999877764 2 46899999999853 588888753 356999999987 999 9999999999
Q ss_pred CCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcE
Q 019521 176 GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGF 254 (340)
Q Consensus 176 g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~ 254 (340)
|.|.++ ...++++|||+|||||||+++++++...... .+++||||+|++++.+|.++|+++.+.+.++ ++
T Consensus 104 G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~~---~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~ 174 (247)
T cd06184 104 GDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGPG---RPVTFIHAARNSAVHAFRDELEELAARLPNL------KL 174 (247)
T ss_pred CceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCCC---CcEEEEEEcCchhhHHHHHHHHHHHhhCCCe------EE
Confidence 999887 4678999999999999999999999876444 7899999999999999999999998765778 89
Q ss_pred EEEEecCCCC--------ccchhhhHHHhHHHHHH-hhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 255 YVAFSRKQPQ--------KVYVQHKMLEQSQRIWN-LLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 255 ~~a~Sr~~~~--------~~yVqd~l~~~~~~l~~-~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
+.++|++... .++++.. .+.+ ...++..+|+|||+ .|++++++.|.+.
T Consensus 175 ~~~~s~~~~~~~~~~~~~~g~~~~~------~l~~~~~~~~~~v~icGp~-~m~~~v~~~l~~~ 231 (247)
T cd06184 175 HVFYSEPEAGDREEDYDHAGRIDLA------LLRELLLPADADFYLCGPV-PFMQAVREGLKAL 231 (247)
T ss_pred EEEECCCCcccccccccccCccCHH------HHhhccCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 9999986432 2333321 2222 12347899999999 9999988888653
No 45
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.94 E-value=8.3e-27 Score=211.16 Aligned_cols=180 Identities=22% Similarity=0.328 Sum_probs=142.0
Q ss_pred CCCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCC
Q 019521 102 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS 177 (340)
Q Consensus 102 ~~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~ 177 (340)
..||||+...+|. ...|+|||+|.|. +.+.++|+|+. ...|.+|.||. .+++ |+.+.+.+|.|.
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-~~~~l~~~vk~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~ 95 (231)
T cd06215 28 YKPGQFLTLELEIDGETVYRAYTLSSSPS-RPDSLSITVKR---------VPGGLVSNWLHDNLKV--GDELWASGPAGE 95 (231)
T ss_pred cCCCCeEEEEEecCCCeEEEeeecccCCC-CCCcEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCcce
Confidence 4789998777652 2479999999985 35679999854 35699999996 7999 999999999999
Q ss_pred CCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521 178 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 256 (340)
Q Consensus 178 F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~ 256 (340)
|.++ ...+++||||+||||||+++++++....... .+++|||++|+++|++|.++|+++.+.+.++ ++..
T Consensus 96 f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~ 166 (231)
T cd06215 96 FTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRPD---ADIVFIHSARSPADIIFADELEELARRHPNF------RLHL 166 (231)
T ss_pred eEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCC---CcEEEEEecCChhhhhHHHHHHHHHHHCCCe------EEEE
Confidence 9887 4468999999999999999999998876544 7899999999999999999999998865778 7888
Q ss_pred EEecCCCC-----ccchhhhHHHhHHHHHHhhcC--CCEEEEeCCCCccHHHHHHHHHHH
Q 019521 257 AFSRKQPQ-----KVYVQHKMLEQSQRIWNLLLS--KASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 257 a~Sr~~~~-----~~yVqd~l~~~~~~l~~~l~~--~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
+.++++.. .+++...+ +.+.+.+ +..+|+|||+ .|++++.+.|.+.
T Consensus 167 ~~~~~~~~~~~~~~g~~~~~~------l~~~~~~~~~~~v~icGp~-~m~~~~~~~l~~~ 219 (231)
T cd06215 167 ILEQPAPGAWGGYRGRLNAEL------LALLVPDLKERTVFVCGPA-GFMKAVKSLLAEL 219 (231)
T ss_pred EEccCCCCcccccCCcCCHHH------HHHhcCCccCCeEEEECCH-HHHHHHHHHHHHc
Confidence 88875441 23443321 1112222 4789999998 9999888777653
No 46
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.94 E-value=1.1e-26 Score=212.43 Aligned_cols=180 Identities=19% Similarity=0.338 Sum_probs=143.5
Q ss_pred CCCHHHHHHhcC--C-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecCC
Q 019521 102 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGS 177 (340)
Q Consensus 102 ~~p~~~l~~~lp--~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~ 177 (340)
..||||+...+| + ..+|+|||+|.|....+.++|+|+. ..+|.+|.||.+ +++ |++|.+.+|.|.
T Consensus 46 ~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~ 114 (243)
T cd06216 46 HRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKA---------QPDGLVSNWLVNHLAP--GDVVELSQPQGD 114 (243)
T ss_pred cCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEE---------cCCCcchhHHHhcCCC--CCEEEEECCcee
Confidence 368999888774 2 3579999999984135889999864 356999999984 899 999999999999
Q ss_pred CCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521 178 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 256 (340)
Q Consensus 178 F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~ 256 (340)
|.++ +..++++|||+||||||+++++++....... .+++|+||+|+.+|.+|.+||+++.+.++++ +++.
T Consensus 115 f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~~~---~~i~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~ 185 (243)
T cd06216 115 FVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARGPT---ADVVLLYYARTREDVIFADELRALAAQHPNL------RLHL 185 (243)
T ss_pred eecCCCCCCCEEEEecCccHhHHHHHHHHHHhcCCC---CCEEEEEEcCChhhhHHHHHHHHHHHhCCCe------EEEE
Confidence 9988 4468999999999999999999999876533 7899999999999999999999998654778 8888
Q ss_pred EEecCCCCccchhhhHHHhHHHHHHhhc--CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 257 AFSRKQPQKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 257 a~Sr~~~~~~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
.+|++ ...+++.....+ +... ++..+|+|||+ .|.+++.+.|.+.
T Consensus 186 ~~s~~-~~~g~~~~~~l~------~~~~~~~~~~vyvcGp~-~m~~~~~~~l~~~ 232 (243)
T cd06216 186 LYTRE-ELDGRLSAAHLD------AVVPDLADRQVYACGPP-GFLDAAEELLEAA 232 (243)
T ss_pred EEcCC-ccCCCCCHHHHH------HhccCcccCeEEEECCH-HHHHHHHHHHHHC
Confidence 88876 334555432211 1222 25799999998 9999998888664
No 47
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.94 E-value=1.3e-26 Score=208.33 Aligned_cols=176 Identities=15% Similarity=0.218 Sum_probs=136.6
Q ss_pred CCCHHHHHHhcCC----CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC
Q 019521 102 QMPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS 177 (340)
Q Consensus 102 ~~p~~~l~~~lp~----~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~ 177 (340)
..||||+...++. ...|+|||+|.|.. +.++|+|+++ ...|..|.||.++++ |+.|.+.+|.|.
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~--~~l~~~vk~~--------~~~g~~s~~l~~l~~--G~~v~i~gP~G~ 95 (218)
T cd06196 28 FTPGQATEVAIDKPGWRDEKRPFTFTSLPED--DVLEFVIKSY--------PDHDGVTEQLGRLQP--GDTLLIEDPWGA 95 (218)
T ss_pred CCCCCEEEEEeeCCCCCccccccccccCCCC--CeEEEEEEEc--------CCCCcHhHHHHhCCC--CCEEEEECCccc
Confidence 4799998877753 35899999999853 7899998643 123678999999999 999999999999
Q ss_pred CCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521 178 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 257 (340)
Q Consensus 178 F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a 257 (340)
|.+. +|+||||+|||||||+++++++...... .+++|+||+|+.+|++|.+||++|.. + ++..+
T Consensus 96 ~~~~---~~~vlia~GtGiaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~----~------~~~~~ 159 (218)
T cd06196 96 IEYK---GPGVFIAGGAGITPFIAILRDLAAKGKL---EGNTLIFANKTEKDIILKDELEKMLG----L------KFINV 159 (218)
T ss_pred eEec---CceEEEecCCCcChHHHHHHHHHhCCCC---ceEEEEEecCCHHHHhhHHHHHHhhc----c------eEEEE
Confidence 8653 5899999999999999999999875433 67999999999999999999999853 4 66777
Q ss_pred EecCCCCccchhhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHH
Q 019521 258 FSRKQPQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 258 ~Sr~~~~~~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
+|++... .|.+..+.+ +.+.+.+.. ++.+|+|||+ .|++++.+.|.+.
T Consensus 160 ~s~~~~~-~~~~g~~~~--~~l~~~~~~~~~~vyiCGp~-~m~~~~~~~l~~~ 208 (218)
T cd06196 160 VTDEKDP-GYAHGRIDK--AFLKQHVTDFNQHFYVCGPP-PMEEAINGALKEL 208 (218)
T ss_pred EcCCCCC-CeeeeEECH--HHHHHhcCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 8886542 333333321 122223333 5789999999 9999998888664
No 48
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.94 E-value=3.5e-26 Score=210.51 Aligned_cols=180 Identities=20% Similarity=0.263 Sum_probs=146.1
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC-CCC
Q 019521 102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 180 (340)
Q Consensus 102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F~l 180 (340)
..||||+...+|....|+|||+|+|.. .+.++|+|+. .|.+|+||.++++ |+.+.+.+|.|. |.+
T Consensus 28 ~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~--G~~v~i~gP~G~~f~~ 93 (253)
T cd06221 28 FKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKP--GDTVGLRGPFGNGFPV 93 (253)
T ss_pred cCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCC--CCEEEEECCcCCCccc
Confidence 469999988888766799999999853 4789999852 3889999999999 999999999997 555
Q ss_pred CC-CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521 181 PP-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 181 ~~-~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S 259 (340)
+. ..+|+||||+||||||+++|++++...... ..+++|+|++|+.+|++|+++|+++.+. .++ ++.+++|
T Consensus 94 ~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~--~~~i~Li~~~r~~~~~~~~~~L~~l~~~-~~~------~~~~~~s 164 (253)
T cd06221 94 EEMKGKDLLLVAGGLGLAPLRSLINYILDNRED--YGKVTLLYGARTPEDLLFKEELKEWAKR-SDV------EVILTVD 164 (253)
T ss_pred ccccCCeEEEEccccchhHHHHHHHHHHhcccc--CCcEEEEEecCChHHcchHHHHHHHHhc-CCe------EEEEEeC
Confidence 53 678999999999999999999999875321 2789999999999999999999999987 778 8888888
Q ss_pred cCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHH
Q 019521 260 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV 310 (340)
Q Consensus 260 r~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~ 310 (340)
++.+ ..+++++.+.+.. ....+..||+|||+ .|++++.+.|.+..
T Consensus 165 ~~~~~~~~~~g~v~~~l~~~~-----~~~~~~~vyicGp~-~mv~~~~~~L~~~G 213 (253)
T cd06221 165 RAEEGWTGNVGLVTDLLPELT-----LDPDNTVAIVCGPP-IMMRFVAKELLKLG 213 (253)
T ss_pred CCCCCccCCccccchhHHhcC-----CCcCCcEEEEECCH-HHHHHHHHHHHHcC
Confidence 7543 3466766554431 00137899999998 99999988887653
No 49
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.94 E-value=3.3e-26 Score=207.75 Aligned_cols=182 Identities=18% Similarity=0.272 Sum_probs=143.5
Q ss_pred CCCHHHHHHhcC--CC--CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecC
Q 019521 102 QMPIDWLVQLVP--PL--KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG 176 (340)
Q Consensus 102 ~~p~~~l~~~lp--~~--~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g 176 (340)
..||||+...+| .- ..|+|||+|.|.. .+.++|+|+. ...|.+|.||.+ +++ |+.|.+.+|.|
T Consensus 31 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~---------~~~G~~s~~l~~~l~~--Gd~v~i~gP~G 98 (235)
T cd06217 31 FLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKR---------VPGGEVSPYLHDEVKV--GDLLEVRGPIG 98 (235)
T ss_pred cCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEeCCce
Confidence 468999988875 22 3499999999853 4789999854 356899999985 899 99999999999
Q ss_pred CCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEE
Q 019521 177 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY 255 (340)
Q Consensus 177 ~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~ 255 (340)
.|.++ ...++++|||+||||||+++++++....... .+++++||+|+.+|.+|.+||.++.+.++++ +++
T Consensus 99 ~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~~---~~i~l~~~~r~~~~~~~~~el~~~~~~~~~~------~~~ 169 (235)
T cd06217 99 TFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGWP---VPFRLLYSARTAEDVIFRDELEQLARRHPNL------HVT 169 (235)
T ss_pred eeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCCC---ceEEEEEecCCHHHhhHHHHHHHHHHHCCCe------EEE
Confidence 98876 4468999999999999999999998876544 7899999999999999999999998865678 888
Q ss_pred EEEecCCC-----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 256 VAFSRKQP-----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 256 ~a~Sr~~~-----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
.++||+.. .++++.+.+.+. +... .++..+|+|||+ +|.+++.+.|.+.
T Consensus 170 ~~~s~~~~~~~~~~~g~~~~~~l~~---~~~~-~~~~~v~icGp~-~m~~~v~~~l~~~ 223 (235)
T cd06217 170 EALTRAAPADWLGPAGRITADLIAE---LVPP-LAGRRVYVCGPP-AFVEAATRLLLEL 223 (235)
T ss_pred EEeCCCCCCCcCCcCcEeCHHHHHh---hCCC-ccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 88888622 234444433221 1000 236899999998 9999998888764
No 50
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.93 E-value=4.4e-26 Score=219.46 Aligned_cols=185 Identities=17% Similarity=0.290 Sum_probs=141.5
Q ss_pred CCCHHHHHHhcC--C-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCC
Q 019521 102 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS 177 (340)
Q Consensus 102 ~~p~~~l~~~lp--~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~ 177 (340)
..||||+...++ . ...|+|||+|.|. .+.++|+|+.+ ..|.+|+||. ++++ |+.|.+.+|.|.
T Consensus 33 ~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~---------~~G~~S~~l~~~l~~--Gd~v~v~gP~G~ 99 (352)
T TIGR02160 33 FAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKI---------PGGLFSTWANDEIRP--GDTLEVMAPQGL 99 (352)
T ss_pred CCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEe---------CCCcchHHHHhcCCC--CCEEEEeCCcee
Confidence 368999988774 2 3479999999984 47899998643 5699999996 7999 999999999999
Q ss_pred CCCC-C--CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCC-CccccCCCc
Q 019521 178 LPRP-P--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGG 253 (340)
Q Consensus 178 F~l~-~--~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-~l~~~~~~~ 253 (340)
|.++ . ..+++||||+|||||||++|+++....... .+++|+||+|+++|++|.+||+++.+.++ ++ +
T Consensus 100 f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~------~ 170 (352)
T TIGR02160 100 FTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEPR---STFTLVYGNRRTASVMFAEELADLKDKHPQRF------H 170 (352)
T ss_pred eecCCCccccccEEEEeccccHhHHHHHHHHHHhcCCC---ceEEEEEEeCCHHHHHHHHHHHHHHHhCcCcE------E
Confidence 9876 3 247999999999999999999998776444 78999999999999999999999987644 47 7
Q ss_pred EEEEEecCCCCccchhhhHH-HhHHHHH-Hhh--cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 254 FYVAFSRKQPQKVYVQHKML-EQSQRIW-NLL--LSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 254 ~~~a~Sr~~~~~~yVqd~l~-~~~~~l~-~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
++.++|++.....+....+. .....+. ++. .....+|+|||+ .|++++++.|.+.
T Consensus 171 ~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~-~m~~~v~~~L~~~ 229 (352)
T TIGR02160 171 LAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQ-AMVDDAEQALTGL 229 (352)
T ss_pred EEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 88889986542221122211 1111111 111 125689999998 9999999988765
No 51
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.93 E-value=8.2e-26 Score=209.18 Aligned_cols=174 Identities=18% Similarity=0.222 Sum_probs=137.9
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC-CCC
Q 019521 102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 180 (340)
Q Consensus 102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F~l 180 (340)
..||||+...+|...+|+|||++.+ .+.++|+|+. .|.+|+||.++++ |+.|.+.+|.|. |.+
T Consensus 33 ~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~-----------~G~~S~~L~~l~~--Gd~v~v~gP~G~~f~~ 96 (263)
T PRK08221 33 VKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRR-----------VGKVTDEIFNLKE--GDKLFLRGPYGNGFPV 96 (263)
T ss_pred CCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEe-----------CCchhhHHHhCCC--CCEEEEECCCCCCccc
Confidence 4699999888887777999999975 3789999852 3899999999999 999999999997 777
Q ss_pred C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521 181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S 259 (340)
+ ...+|+||||+|||||||+|++++....... ..+++|+||+|+.+|++|++||++|.+. + .+.++++
T Consensus 97 ~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~--~~~v~L~~g~r~~~~l~~~~el~~~~~~---~------~~~~~~~ 165 (263)
T PRK08221 97 DTYKGKELIVVAGGTGVAPVKGLMRYFYENPQE--IKSLDLILGFKNPDDILFKEDLKRWREK---I------NLILTLD 165 (263)
T ss_pred CccCCccEEEEcccccHHHHHHHHHHHHhCccc--CceEEEEEecCCHHHhhHHHHHHHHhhc---C------cEEEEec
Confidence 6 5568999999999999999999998764321 2589999999999999999999999875 3 3445555
Q ss_pred cCCC----CccchhhhHHHhHHHHHHhhc--CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 260 RKQP----QKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 260 r~~~----~~~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
++.. ..+++++.+.+. .+. .+..+|+|||+ .|++++.+.|.+.
T Consensus 166 ~~~~~~~~~~G~v~~~l~~~------~~~~~~~~~vylCGp~-~mv~~~~~~L~~~ 214 (263)
T PRK08221 166 EGEEGYRGNVGLVTKYIPEL------TLKDIDNMQVIVVGPP-IMMKFTVLEFLKR 214 (263)
T ss_pred CCCCCCccCccccChhhHhc------cCCCcCCeEEEEECCH-HHHHHHHHHHHHc
Confidence 5432 245666544331 111 36789999999 9999998888654
No 52
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.93 E-value=7.2e-26 Score=203.26 Aligned_cols=175 Identities=18% Similarity=0.282 Sum_probs=139.1
Q ss_pred CCCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCC
Q 019521 102 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS 177 (340)
Q Consensus 102 ~~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~ 177 (340)
..||||+...+|. ...|+|||+|.|.. .+.++|+|+. .|.+|.+|. ++++ |+.|.+.+|.|.
T Consensus 23 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~-----------~G~~t~~l~~~l~~--G~~v~i~gP~G~ 88 (216)
T cd06198 23 HRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKA-----------LGDYTRRLAERLKP--GTRVTVEGPYGR 88 (216)
T ss_pred cCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEe-----------CChHHHHHHHhCCC--CCEEEEECCCCC
Confidence 3699998887774 57899999998853 4789999853 378999998 8999 999999999999
Q ss_pred CCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521 178 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 257 (340)
Q Consensus 178 F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a 257 (340)
|.++...++++|||+||||||+++++++....... .+++|+||+|+.+|.+|.++|+++.+. .++ ++++.
T Consensus 89 ~~~~~~~~~~vlia~GtGiap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~-~~~------~~~~~ 158 (216)
T cd06198 89 FTFDDRRARQIWIAGGIGITPFLALLEALAARGDA---RPVTLFYCVRDPEDAVFLDELRALAAA-AGV------VLHVI 158 (216)
T ss_pred CcccccCceEEEEccccCHHHHHHHHHHHHhcCCC---ceEEEEEEECCHHHhhhHHHHHHHHHh-cCe------EEEEE
Confidence 98873378999999999999999999998876543 789999999999999999999999887 466 67766
Q ss_pred EecCCCCccchhhhHHHhHHHHHHhh--cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 258 FSRKQPQKVYVQHKMLEQSQRIWNLL--LSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 258 ~Sr~~~~~~yVqd~l~~~~~~l~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
.+++.. .......+ .+.. ..+..+|+|||+ .|++++++.|.+.
T Consensus 159 ~~~~~~-~~~~~~~~-------~~~~~~~~~~~vyicGp~-~m~~~v~~~l~~~ 203 (216)
T cd06198 159 DSPSDG-RLTLEQLV-------RALVPDLADADVWFCGPP-GMADALEKGLRAL 203 (216)
T ss_pred eCCCCc-ccchhhhh-------hhcCCCcCCCeEEEECcH-HHHHHHHHHHHHc
Confidence 655332 11222211 0111 236899999998 9999998888763
No 53
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.93 E-value=6.5e-26 Score=215.17 Aligned_cols=181 Identities=17% Similarity=0.178 Sum_probs=136.5
Q ss_pred CCHHHHHHhcC-C-----CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecC
Q 019521 103 MPIDWLVQLVP-P-----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG 176 (340)
Q Consensus 103 ~p~~~l~~~lp-~-----~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g 176 (340)
.|||++....+ . ...|+|||+|.|.. .+.++|+|+. ...|.+|+||.++++ ||+|.+.+|.+
T Consensus 83 ~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~---------~~~G~~S~~L~~lk~--Gd~v~v~GP~f 150 (325)
T PTZ00274 83 KPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKR---------KKDGLMTNHLFGMHV--GDKLLFRSVTF 150 (325)
T ss_pred CCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEE---------cCCCcccHHHhcCCC--CCEEEEeCCee
Confidence 58888764333 1 24799999999853 5789999854 468999999999999 99999999877
Q ss_pred CCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCC--C-CCCCEEEEEeccCCchhhhHHHHHHhHhcCC-CccccCC
Q 019521 177 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS--G-PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKG 251 (340)
Q Consensus 177 ~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~--~-~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-~l~~~~~ 251 (340)
.|.++ +..++++|||||||||||++|+++...+... . ...+++|+||+|+.+|++|++||+++++.++ ++
T Consensus 151 ~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~di~~~~eL~~La~~~~~~f----- 225 (325)
T PTZ00274 151 KIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRF----- 225 (325)
T ss_pred ecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHHhhHHHHHHHHHHhCCCcE-----
Confidence 77665 5557999999999999999999998775321 0 1258999999999999999999999987655 58
Q ss_pred CcEEEEEecCCC------CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHH
Q 019521 252 GGFYVAFSRKQP------QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWST 305 (340)
Q Consensus 252 ~~~~~a~Sr~~~------~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~ 305 (340)
+++.+.|++.. ..++|.+.+... +..... .+..+|+|||+ +|++.+...
T Consensus 226 -~v~~~ls~~~~~~~w~g~~G~V~~~ll~~---~~~~~~~~~~~vylCGPp-~Mm~av~~~ 281 (325)
T PTZ00274 226 -KVYYTIDQAVEPDKWNHFLGYVTKEMVRR---TMPAPEEKKKIIMLCGPD-QLLNHVAGT 281 (325)
T ss_pred -EEEEEeCCCCcccCCCCCCCccCHHHHHH---hcCCCccCCcEEEEeCCH-HHHHHhcCC
Confidence 88888886421 245665543211 110011 13579999999 999888554
No 54
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.93 E-value=2e-25 Score=203.55 Aligned_cols=182 Identities=22% Similarity=0.325 Sum_probs=141.9
Q ss_pred CCCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCC
Q 019521 102 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS 177 (340)
Q Consensus 102 ~~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~ 177 (340)
..|||++...+|. ..+|+|||+|.+.. +.++|+|+.+ ..|.+|.||. ++++ |+.+.+.+|.|.
T Consensus 33 ~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~---------~~G~~s~~l~~~~~~--G~~v~i~gP~G~ 99 (241)
T cd06214 33 YRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRV---------PGGRFSNWANDELKA--GDTLEVMPPAGR 99 (241)
T ss_pred cCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEc---------CCCccchhHHhccCC--CCEEEEeCCccc
Confidence 3689998888862 36899999998854 4799998543 5699999997 7999 999999999999
Q ss_pred CCCC-C-CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCC-CccccCCCcE
Q 019521 178 LPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGF 254 (340)
Q Consensus 178 F~l~-~-~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-~l~~~~~~~~ 254 (340)
|.++ + ..+++||||+||||||++++++++...... .+++|+|++|+.+|++|.+||+++.+.++ ++ ++
T Consensus 100 ~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~------~~ 170 (241)
T cd06214 100 FTLPPLPGARHYVLFAAGSGITPVLSILKTALAREPA---SRVTLVYGNRTEASVIFREELADLKARYPDRL------TV 170 (241)
T ss_pred cccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCCC---CcEEEEEEeCCHHHhhHHHHHHHHHHhCcCce------EE
Confidence 9887 4 478999999999999999999998876544 78999999999999999999999976533 67 67
Q ss_pred EEEEecCCCC----ccchhhhHHHhHHHHH-Hhh--cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 255 YVAFSRKQPQ----KVYVQHKMLEQSQRIW-NLL--LSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 255 ~~a~Sr~~~~----~~yVqd~l~~~~~~l~-~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
..++|+++.. .+.+.+.+. .... +.+ .++..||+|||+ .|++.+.+.|.+.
T Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~v~icGp~-~mv~~v~~~l~~~ 228 (241)
T cd06214 171 IHVLSREQGDPDLLRGRLDAAKL---NALLKNLLDATEFDEAFLCGPE-PMMDAVEAALLEL 228 (241)
T ss_pred EEEecCCCCCcccccCccCHHHH---HHhhhhhcccccCcEEEEECCH-HHHHHHHHHHHHc
Confidence 7788876442 223322221 1111 111 236899999999 8999998887653
No 55
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.93 E-value=1.6e-25 Score=205.21 Aligned_cols=172 Identities=22% Similarity=0.277 Sum_probs=137.1
Q ss_pred CCCHHHHHHhcCC----CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC
Q 019521 102 QMPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS 177 (340)
Q Consensus 102 ~~p~~~l~~~lp~----~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~ 177 (340)
..||||+...+|. ...|+|||+|.|.. .+.++|+|+.+ |.+|+||.++++ |++|.+.+|.|.
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~-----------G~~s~~l~~l~~--Gd~v~i~gP~G~ 90 (246)
T cd06218 25 AKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVV-----------GKGTRLLSELKA--GDELDVLGPLGN 90 (246)
T ss_pred CCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEE-----------CcchHHHhcCCC--CCEEEEEecCCC
Confidence 4689988887764 46899999998843 47899998642 788999999999 999999999995
Q ss_pred -CCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521 178 -LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 256 (340)
Q Consensus 178 -F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~ 256 (340)
|.+++..+++||||+||||||++++++++... . .+++|||++|+.+|.+|++||+++.. .+..
T Consensus 91 ~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~--~---~~v~l~~~~r~~~d~~~~~eL~~l~~-----------~~~~ 154 (246)
T cd06218 91 GFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAER--G---IKVTVLLGFRSADDLFLVEEFEALGA-----------EVYV 154 (246)
T ss_pred CcCCCCCCCcEEEEecccCHHHHHHHHHHHHhc--C---CceEEEEEccchhhhhhHHHHHhhCC-----------cEEE
Confidence 76665568999999999999999999998763 2 67999999999999999999998843 2222
Q ss_pred EEecCC--CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHH
Q 019521 257 AFSRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV 310 (340)
Q Consensus 257 a~Sr~~--~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~ 310 (340)
++++. ..++|+++.+.+.... ..+..||+|||+ .|++++++.|.+..
T Consensus 155 -~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp~-~mv~~~~~~L~~~G 203 (246)
T cd06218 155 -ATDDGSAGTKGFVTDLLKELLAE-----ARPDVVYACGPE-PMLKAVAELAAERG 203 (246)
T ss_pred -EcCCCCCCcceehHHHHHHHhhc-----cCCCEEEEECCH-HHHHHHHHHHHhcC
Confidence 23332 2467888877655322 147899999998 99999999987753
No 56
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.93 E-value=1.3e-25 Score=203.44 Aligned_cols=183 Identities=17% Similarity=0.196 Sum_probs=143.3
Q ss_pred CCCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCC
Q 019521 102 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 178 (340)
Q Consensus 102 ~~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F 178 (340)
..|||++...+|. ...|+|||+|.+.. .+.++|+|+. ...|.+|.||.++++ |++|.+.+|.|.|
T Consensus 29 ~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~---------~~~G~~s~~l~~~~~--G~~v~i~gP~G~~ 96 (234)
T cd06183 29 LPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKI---------YPGGKMSQYLHSLKP--GDTVEIRGPFGKF 96 (234)
T ss_pred CCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEE---------CCCCcchhHHhcCCC--CCEEEEECCccce
Confidence 4789998888875 46899999998853 4689999854 246999999999999 9999999999999
Q ss_pred CCC-CCC-CCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcC-CCccccCCCcEE
Q 019521 179 PRP-PPS-VPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGFY 255 (340)
Q Consensus 179 ~l~-~~~-~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~-g~l~~~~~~~~~ 255 (340)
.+. ... +++||||+||||||+++++++....... ..+++|+|++|+.+|.+|.+||+++.+.+ +++ +++
T Consensus 97 ~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~--~~~i~l~~~~r~~~~~~~~~~l~~~~~~~~~~~------~~~ 168 (234)
T cd06183 97 EYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPED--KTKISLLYANRTEEDILLREELDELAKKHPDRF------KVH 168 (234)
T ss_pred eecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCc--CcEEEEEEecCCHHHhhhHHHHHHHHHhCcccE------EEE
Confidence 886 444 7999999999999999999999875311 27899999999999999999999998752 567 778
Q ss_pred EEEecCCC----CccchhhhHHHhHHHHHHh-hcCCCEEEEeCCCCccHH-HHHHHHHH
Q 019521 256 VAFSRKQP----QKVYVQHKMLEQSQRIWNL-LLSKASIYVAGSATKMPS-DVWSTFEE 308 (340)
Q Consensus 256 ~a~Sr~~~----~~~yVqd~l~~~~~~l~~~-l~~~~~iyvCG~~~~M~~-~v~~~L~~ 308 (340)
.++|+++. ..+++++.+.+.. ... ...+..+|+|||+ .|++ ++++.|.+
T Consensus 169 ~~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~icGp~-~~~~~~~~~~l~~ 223 (234)
T cd06183 169 YVLSRPPEGWKGGVGFITKEMIKEH---LPPPPSEDTLVLVCGPP-PMIEGAVKGLLKE 223 (234)
T ss_pred EEEcCCCcCCccccceECHHHHHHh---CCCCCCCCeEEEEECCH-HHHHHHHHHHHHH
Confidence 88887543 2456665432220 000 1236789999998 9999 88887764
No 57
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.93 E-value=2.3e-25 Score=205.94 Aligned_cols=174 Identities=18% Similarity=0.180 Sum_probs=136.4
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC-CCC
Q 019521 102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 180 (340)
Q Consensus 102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F~l 180 (340)
..||||+...+|...+|+|||+|.+ .+.++|+|+. .|.+|++|.++++ ||.|.+.+|.|. |.+
T Consensus 31 ~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~-----------~G~~S~~L~~l~~--Gd~v~i~gP~G~~f~~ 94 (261)
T TIGR02911 31 VKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRR-----------VGKVTDEVFTLKE--GDNLFLRGPYGNGFDV 94 (261)
T ss_pred CCCCcEEEEEecCCCccceecCCCC---CCeEEEEEEe-----------CchhhHHHHcCCC--CCEEEEecCCCCCccc
Confidence 4799999988887778999999853 4789999852 3899999999999 999999999997 777
Q ss_pred C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521 181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S 259 (340)
+ ...+|++|||+||||||++++++++...... ..+++|+||+|+.+|++|.+||++|.+. .++ ...++
T Consensus 95 ~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~--~~~v~L~~~~r~~~~~~~~~eL~~l~~~-~~~--------~~~~~ 163 (261)
T TIGR02911 95 DNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKE--IKSLNLILGFKTPDDILFKEDIAEWKGN-INL--------TLTLD 163 (261)
T ss_pred CccCCceEEEEecccCcHHHHHHHHHHHhCccc--CceEEEEEecCCHHHhhHHHHHHHHHhc-CcE--------EEEEc
Confidence 6 5568999999999999999999988764321 2679999999999999999999999875 333 33444
Q ss_pred cCCC----CccchhhhHHHhHHHHHHhhc--CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 260 RKQP----QKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 260 r~~~----~~~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
++.. ..+++++.+.+. .+. .+..+|+|||+ .|.+++++.|.+.
T Consensus 164 ~~~~~~~~~~g~v~~~l~~~------~~~~~~~~~v~lCGp~-~mv~~~~~~L~~~ 212 (261)
T TIGR02911 164 EAEEDYKGNIGLVTKYIPEL------TLKDIEEVQAIVVGPP-IMMKFTVQELLKK 212 (261)
T ss_pred CCCCCCcCCeeccCHhHHhc------cCCCccceEEEEECCH-HHHHHHHHHHHHc
Confidence 4322 245666544331 111 26789999999 9999988887664
No 58
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.93 E-value=2.8e-25 Score=198.49 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=134.2
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccC-CCCccccc-cCCCCCCcEEEEEeecCCCC
Q 019521 102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLA-GLDPQQGIYIPAWFQKGSLP 179 (340)
Q Consensus 102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~-G~~S~~L~-~l~~~~G~~v~v~~~~g~F~ 179 (340)
..||||+...+|....|+|||+|.|.+ .+.++|+|+.+ .. +.+|.||. .+++ |+.|.+.+|.|.|.
T Consensus 26 ~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~---------~~g~~~s~~l~~~~~~--Gd~v~i~gP~g~f~ 93 (211)
T cd06185 26 FEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLRE---------PASRGGSRYMHELLRV--GDELEVSAPRNLFP 93 (211)
T ss_pred CCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEec---------cCCCchHHHHHhcCCC--CCEEEEcCCccCCc
Confidence 478999998888778899999999853 58899998643 33 34799997 5899 99999999999998
Q ss_pred CCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521 180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 180 l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S 259 (340)
++...+|+||||+||||||+++++++..... .++.++||+|+.+|.+|.++|+++. . .++ .+.++
T Consensus 94 ~~~~~~~~v~ia~GtGiap~~~il~~~~~~~-----~~v~l~~~~r~~~~~~~~~~l~~~~-~-~~~--------~~~~~ 158 (211)
T cd06185 94 LDEAARRHLLIAGGIGITPILSMARALAARG-----ADFELHYAGRSREDAAFLDELAALP-G-DRV--------HLHFD 158 (211)
T ss_pred CCCCCCcEEEEeccchHhHHHHHHHHHHhCC-----CCEEEEEEeCCCcchhHHHHHhhhc-C-CcE--------EEEEC
Confidence 8744679999999999999999999987632 6799999999999999999999987 3 344 34455
Q ss_pred cCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 260 RKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 260 r~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
+.. ...++.+.+.. ..++..+|+|||+ .|++++++.|.+.
T Consensus 159 ~~~-~~~~~~~~~~~--------~~~~~~vyicGp~-~m~~~~~~~l~~~ 198 (211)
T cd06185 159 DEG-GRLDLAALLAA--------PPAGTHVYVCGPE-GMMDAVRAAAAAL 198 (211)
T ss_pred CCC-CccCHHHHhcc--------CCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 433 23344433322 2346899999998 9999998888664
No 59
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.93 E-value=2.6e-25 Score=209.50 Aligned_cols=192 Identities=17% Similarity=0.148 Sum_probs=140.9
Q ss_pred CCCHHHHHHhcCC-------CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEee
Q 019521 102 QMPIDWLVQLVPP-------LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQ 174 (340)
Q Consensus 102 ~~p~~~l~~~lp~-------~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~ 174 (340)
..||||+...++. ...|+||++|+|. ..+.++|+|+.+.-.........|.+|+||.++++ ||.|.+.+|
T Consensus 64 ~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP 140 (300)
T PTZ00319 64 LPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD-EKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKL--GDKIEMRGP 140 (300)
T ss_pred CccceEEEEEEEeCCCCccceEEeeeccCCCcc-cCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCC--CCEEEEEcc
Confidence 3589998877652 3469999999984 46889999976521111111246999999999999 999999999
Q ss_pred cCCCCCC-C---------------CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHH
Q 019521 175 KGSLPRP-P---------------PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLS 238 (340)
Q Consensus 175 ~g~F~l~-~---------------~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~ 238 (340)
.|.|.+. + ..+|++|||+|||||||++++++....... ..++.|+||+|+.+|.+|.+||++
T Consensus 141 ~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~~--~~~i~liyg~r~~~dl~~~~eL~~ 218 (300)
T PTZ00319 141 VGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKED--RTKVFLVYANQTEDDILLRKELDE 218 (300)
T ss_pred ceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCCC--CceEEEEEecCCHHHhhHHHHHHH
Confidence 9998653 1 124899999999999999999998865322 157999999999999999999999
Q ss_pred hHhcCCCccccCCCcEEEEEecCCC-----CccchhhhHHHhHHHHHHhhc------CCCEEEEeCCCCccHH-HHHHHH
Q 019521 239 HSLNDGVFSEAKGGGFYVAFSRKQP-----QKVYVQHKMLEQSQRIWNLLL------SKASIYVAGSATKMPS-DVWSTF 306 (340)
Q Consensus 239 ~~~~~g~l~~~~~~~~~~a~Sr~~~-----~~~yVqd~l~~~~~~l~~~l~------~~~~iyvCG~~~~M~~-~v~~~L 306 (340)
+.+. +++ +++.+.++++. ..++|++.+.+.. ..... ++..+|+|||+ +|++ .+.+.|
T Consensus 219 ~~~~-~~~------~~~~~~~~~~~~~~~~~~G~v~~~~l~~~---~~~~~~~~~~~~~~~vyiCGp~-~mv~~~~~~~L 287 (300)
T PTZ00319 219 AAKD-PRF------HVWYTLDREATPEWKYGTGYVDEEMLRAH---LPVPDPQNSGIKKVMALMCGPP-PMLQMAVKPNL 287 (300)
T ss_pred HhhC-CCE------EEEEEECCCCCCCcccccceeCHHHHHhh---cCCccccccccCCeEEEEECCH-HHHHHHHHHHH
Confidence 7655 788 88888887432 3467766443321 01011 24689999999 8887 456666
Q ss_pred HHH
Q 019521 307 EEI 309 (340)
Q Consensus 307 ~~i 309 (340)
.+.
T Consensus 288 ~~~ 290 (300)
T PTZ00319 288 EKI 290 (300)
T ss_pred HHc
Confidence 543
No 60
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.92 E-value=1.2e-24 Score=200.71 Aligned_cols=179 Identities=20% Similarity=0.260 Sum_probs=138.1
Q ss_pred CCCHHHHHHhcCCC---CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCC
Q 019521 102 QMPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS 177 (340)
Q Consensus 102 ~~p~~~l~~~lp~~---~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~ 177 (340)
..||||+...++.- ..|.|||+|+|.. ++.+.|+|++ ...|..|+||+ ++++ ||+|.+..|.|.
T Consensus 35 f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~---------~~~G~~S~~Lh~~lk~--Gd~l~v~~P~G~ 102 (266)
T COG1018 35 FEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKR---------EDGGGGSNWLHDHLKV--GDTLEVSAPAGD 102 (266)
T ss_pred cCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEE---------eCCCcccHHHHhcCCC--CCEEEEecCCCC
Confidence 46899998888754 7899999999964 4688999854 35599999999 9999 999999999999
Q ss_pred CCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521 178 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 256 (340)
Q Consensus 178 F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~ 256 (340)
|.++ .+..|++|||+|||||||+||++...... + .++.++|++|+++|..|++| +.+...+++.. .+..
T Consensus 103 F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~---~-~~v~l~h~~R~~~~~af~de-~~l~~~~~~~~-----~~~~ 172 (266)
T COG1018 103 FVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG---P-ADVVLVHAARTPADLAFRDE-LELAAELPNAL-----LLGL 172 (266)
T ss_pred ccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC---C-CCEEEEEecCChhhcchhhH-HHHHhhCCCCe-----eEEE
Confidence 9998 56669999999999999999999988764 2 57999999999999999999 88776655541 3443
Q ss_pred EEecCCCCccch-hhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHH
Q 019521 257 AFSRKQPQKVYV-QHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVS 311 (340)
Q Consensus 257 a~Sr~~~~~~yV-qd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~ 311 (340)
..++... .++. ...+.. .... +..+|+|||. +|.++|+..|.+...
T Consensus 173 ~~~~~~~-~g~~~~~~l~~-------~~~~~~r~~y~CGp~-~fm~av~~~l~~~g~ 220 (266)
T COG1018 173 YTERGKL-QGRIDVSRLLS-------AAPDGGREVYLCGPG-PFMQAVRLALEALGV 220 (266)
T ss_pred EEecCCc-cccccHHHHhc-------cCCCCCCEEEEECCH-HHHHHHHHHHHHcCC
Confidence 3332211 2222 122111 2222 3899999998 999999998877643
No 61
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.92 E-value=1.4e-24 Score=195.15 Aligned_cols=185 Identities=19% Similarity=0.329 Sum_probs=155.1
Q ss_pred CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCcc
Q 019521 116 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTG 195 (340)
Q Consensus 116 ~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~~~~~pii~Ia~GtG 195 (340)
..|.||+||.|.+ -+.|.|-|++...+......+.|.||+|+.+|++ ||.|.|++|.|.|...+.++++|||+||.|
T Consensus 210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKp--GDKvtisGPfGEfFaKdtdaemvFigGGAG 286 (410)
T COG2871 210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGAG 286 (410)
T ss_pred HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecC--CCeEEEeccchhhhhccCCCceEEEecCcC
Confidence 4699999999965 6889999988877666667889999999999999 999999999999988877899999999999
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCCC------ccchh
Q 019521 196 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ------KVYVQ 269 (340)
Q Consensus 196 IAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~~------~~yVq 269 (340)
.||+||-+-..+.+... .+++.+.||+|+..+.+|++|++++++.+++| +.++++|.+..+ .+++.
T Consensus 287 mapmRSHIfDqL~rlhS--kRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF------~wH~aLSdplpEDnW~g~TgFih 358 (410)
T COG2871 287 MAPMRSHIFDQLKRLHS--KRKISFWYGARSLREMFYQEDFDQLQAENPNF------HWHLALSDPLPEDNWDGYTGFIH 358 (410)
T ss_pred cCchHHHHHHHHHhhcc--cceeeeeeccchHHHhHHHHHHHHHHhhCCCc------EEEEEecCCCCcCCcccchhHHH
Confidence 99999998877765443 38899999999999999999999999888999 999999987653 35555
Q ss_pred hhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhC
Q 019521 270 HKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEG 314 (340)
Q Consensus 270 d~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~ 314 (340)
..+.++ .+.++-. +++.+|+|||+ .|..+|.+.|.+...+..
T Consensus 359 nv~~en--~Lk~h~aPEDceyYmCGPp-~mNasvikmL~dlGVE~e 401 (410)
T COG2871 359 NVLYEN--YLKDHEAPEDCEYYMCGPP-LMNASVIKMLKDLGVERE 401 (410)
T ss_pred HHHHhh--hhhcCCCchheeEEeeCcc-hhhHHHHHHHHhcCcccc
Confidence 555543 2222222 28999999999 999999999998876543
No 62
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.91 E-value=2.7e-24 Score=200.91 Aligned_cols=172 Identities=16% Similarity=0.156 Sum_probs=132.3
Q ss_pred CCCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEE-EEEeecCCCC
Q 019521 102 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLP 179 (340)
Q Consensus 102 ~~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~v~~~~g~F~ 179 (340)
..||||+...++.. .+|+|||+|++.. .+.++|+|+. .|..|.+|.++++ |+.| .+.+|.|.|.
T Consensus 28 ~~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~-----------~G~~T~~L~~l~~--Gd~v~~i~GP~G~~~ 93 (281)
T PRK06222 28 AKPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQA-----------VGKSTRKLAELKE--GDSILDVVGPLGKPS 93 (281)
T ss_pred CCCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEe-----------CCcHHHHHhcCCC--CCEEeeEEcCCCCCc
Confidence 36999998887643 4689999998743 5789999864 3899999999999 9999 7999999866
Q ss_pred CCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521 180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 180 l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S 259 (340)
..+..++++|||+|+||||+++++++..... .+++++||+|+.+|.+|.+||+++... + ++ .+
T Consensus 94 ~~~~~~~~llIaGGiGiaPl~~l~~~l~~~~-----~~v~l~~g~r~~~d~~~~~el~~~~~~---~--------~v-~~ 156 (281)
T PRK06222 94 EIEKFGTVVCVGGGVGIAPVYPIAKALKEAG-----NKVITIIGARNKDLLILEDEMKAVSDE---L--------YV-TT 156 (281)
T ss_pred ccCCCCeEEEEeCcCcHHHHHHHHHHHHHCC-----CeEEEEEecCCHHHhhcHHHHHhhCCe---E--------EE-Ec
Confidence 5533579999999999999999999876542 579999999999999999999987643 1 11 22
Q ss_pred cCC--CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 260 RKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 260 r~~--~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
.+. ..+++|++.+.+.... ..+...||+|||+ +|++.+.+.+.+.
T Consensus 157 ~d~~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP~-~M~~~v~~~l~~~ 203 (281)
T PRK06222 157 DDGSYGRKGFVTDVLKELLES----GKKVDRVVAIGPV-IMMKFVAELTKPY 203 (281)
T ss_pred CCCCcCcccchHHHHHHHhhc----CCCCcEEEEECCH-HHHHHHHHHHHhc
Confidence 222 2456787765443111 1114689999999 9999999888664
No 63
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.91 E-value=4.2e-24 Score=196.32 Aligned_cols=166 Identities=21% Similarity=0.285 Sum_probs=133.3
Q ss_pred CCCHHHHHHhcCCC---CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC-
Q 019521 102 QMPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS- 177 (340)
Q Consensus 102 ~~p~~~l~~~lp~~---~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~- 177 (340)
..||||+...+|.. .+|+|||+|+| .+.++|+|+. .|.+|+||.++++ |++|.+.+|.|.
T Consensus 32 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~--G~~v~i~gP~G~~ 95 (250)
T PRK00054 32 MKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKE--GDELDIRGPLGNG 95 (250)
T ss_pred CCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCC--CCEEEEEcccCCC
Confidence 47899988877754 68999999998 3789999853 3889999999999 999999999996
Q ss_pred CCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521 178 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 257 (340)
Q Consensus 178 F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a 257 (340)
|.++...+|+||||+||||||+++++++..... .++.|+|++|+.+|++|.+||+++.+ + ++.
T Consensus 96 f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~el~~~~~----~--------~~~ 158 (250)
T PRK00054 96 FDLEEIGGKVLLVGGGIGVAPLYELAKELKKKG-----VEVTTVLGARTKDEVIFEEEFAKVGD----V--------YVT 158 (250)
T ss_pred CCCCCCCCeEEEEeccccHHHHHHHHHHHHHcC-----CcEEEEEEcCCHHHhhhHHHHHhcCC----E--------EEE
Confidence 877655579999999999999999999987643 56999999999999999999998431 2 222
Q ss_pred EecCC--CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 258 FSRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 258 ~Sr~~--~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
+++. ..++|+++.+.+.. .+...||+|||+ .|++++.+.|.+.
T Consensus 159 -~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp~-~m~~~v~~~l~~~ 203 (250)
T PRK00054 159 -TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGPE-IMMKKVVEILKEK 203 (250)
T ss_pred -ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCCH-HHHHHHHHHHHHc
Confidence 2222 24578888765431 235689999998 9999999988774
No 64
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.91 E-value=9.7e-24 Score=194.02 Aligned_cols=177 Identities=21% Similarity=0.290 Sum_probs=145.2
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCC
Q 019521 102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP 181 (340)
Q Consensus 102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~ 181 (340)
..||||+...+|....|||||+|.+.. .+.++|.|++. ..|.+|.++..+++ ||.|.+.||.|++...
T Consensus 36 ~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~---------~~G~~T~~i~~~k~--gd~i~v~GP~G~~~~~ 103 (252)
T COG0543 36 FKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVY---------EVGKVTKYIFGLKE--GDKIRVRGPLGNGFLR 103 (252)
T ss_pred cCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEE---------eCChHHHHHhhccC--CCEEEEEcCCCCCccc
Confidence 479999999999999999999999953 57778887553 57999999999999 9999999999987665
Q ss_pred -CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe-
Q 019521 182 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS- 259 (340)
Q Consensus 182 -~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S- 259 (340)
+..+|+++||+|||+||+++++++....+.. .+++++||+|+++|+++.+||+++.+. .++.+.+
T Consensus 104 ~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~---~~V~~~~G~~~~~dl~~~~el~~~~~~----------~~~~~~~~ 170 (252)
T COG0543 104 EKIGKPVLLIAGGTGIAPLYAIAKELKEKGDA---NKVTLLYGARTAKDLLLLDELEELAEK----------EVHPVTDD 170 (252)
T ss_pred cccCCcEEEEecccCHhHHHHHHHHHHhcCCC---ceEEEEEeccChhhcccHHHHHHhhcC----------cEEEEECC
Confidence 6777899999999999999999999986532 789999999999999999999999864 2333443
Q ss_pred cCCCCccch-hhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHH
Q 019521 260 RKQPQKVYV-QHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV 310 (340)
Q Consensus 260 r~~~~~~yV-qd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~ 310 (340)
.....+++| ++.+.+... .+...+|+|||+ .|.+.+.+.+.+..
T Consensus 171 ~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp~-~M~~~v~~~~~~~g 215 (252)
T COG0543 171 GWKGRKGFVTTDVLKELLD------LEVDDVYICGPP-AMVKAVREKLKEYG 215 (252)
T ss_pred CCCccCcceeHHHHhhhcc------ccCCEEEEECCH-HHHHHHHHHHHhcC
Confidence 122257888 676655421 146899999999 99999988887754
No 65
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.91 E-value=7.7e-24 Score=192.55 Aligned_cols=165 Identities=21% Similarity=0.253 Sum_probs=130.4
Q ss_pred CCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC-CC
Q 019521 101 VQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LP 179 (340)
Q Consensus 101 ~~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F~ 179 (340)
-..||||+...+|....|+|||+|+| +.++|+|+. .|.+|+||.++++ ||.+.+.+|.|. |.
T Consensus 23 ~~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~--Gd~v~i~gP~G~~f~ 85 (233)
T cd06220 23 DFKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKE--GDKLGIRGPYGNGFE 85 (233)
T ss_pred CCCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCC--CCEEEEECcCCCCcc
Confidence 34799999888877677999999987 689999852 3899999999999 999999999997 76
Q ss_pred CCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521 180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 180 l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S 259 (340)
++ .+|+||||+||||||+++++++.... .++.|+||+|+.+|++|++||++. ..+ .+ ..+
T Consensus 86 ~~--~~~~vliAgGtGitP~~sil~~~~~~------~~i~l~~~~r~~~d~~~~~eL~~~----~~~------~~--~~~ 145 (233)
T cd06220 86 LV--GGKVLLIGGGIGIAPLAPLAERLKKA------ADVTVLLGARTKEELLFLDRLRKS----DEL------IV--TTD 145 (233)
T ss_pred CC--CCeEEEEecCcChHHHHHHHHHHHhc------CCEEEEEecCChHHChhHHHHhhC----CcE------EE--EEe
Confidence 65 57999999999999999999988764 579999999999999999999972 222 22 222
Q ss_pred c-CCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 260 R-KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 260 r-~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
. .....+++++.+.+.. ......+|+|||+ .|.+++.+.|.+.
T Consensus 146 ~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp~-~m~~~~~~~L~~~ 189 (233)
T cd06220 146 DGSYGFKGFVTDLLKELD------LEEYDAIYVCGPE-IMMYKVLEILDER 189 (233)
T ss_pred CCCCcccceehHHHhhhc------ccCCCEEEEECCH-HHHHHHHHHHHhc
Confidence 1 1123567777554331 1235689999998 9999998888764
No 66
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.90 E-value=8.3e-24 Score=194.14 Aligned_cols=171 Identities=16% Similarity=0.152 Sum_probs=131.4
Q ss_pred CCCHHHHHHhcC-CCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEE-EEEeecCCCC
Q 019521 102 QMPIDWLVQLVP-PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLP 179 (340)
Q Consensus 102 ~~p~~~l~~~lp-~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~v~~~~g~F~ 179 (340)
..||||+...++ ....|+|||+|.|.. .+.++|+|+. .|..|.+|.++++ |+.+ .+.+|.|.|.
T Consensus 27 ~~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk~-----------~G~~t~~l~~l~~--G~~v~~i~gP~G~~~ 92 (248)
T cd06219 27 AKPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQV-----------VGKSTRELATLEE--GDKIHDVVGPLGKPS 92 (248)
T ss_pred CCCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEEe-----------CCchHHHHHhcCC--CCEeeeeecCCCCCe
Confidence 368999887765 345799999998743 4789999853 3889999999999 9999 6999999876
Q ss_pred CCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521 180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 180 l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S 259 (340)
+.+..+++||||+||||||+++++++..... .+++|+||+|+.+|++|.+||+++.+. . +.+ +
T Consensus 93 ~~~~~~~~lliagG~GiaP~~~~l~~~~~~~-----~~v~l~~~~r~~~~~~~~~el~~l~~~----------~-~~~-~ 155 (248)
T cd06219 93 EIENYGTVVFVGGGVGIAPIYPIAKALKEAG-----NRVITIIGARTKDLVILEDEFRAVSDE----------L-IIT-T 155 (248)
T ss_pred ecCCCCeEEEEeCcccHHHHHHHHHHHHHcC-----CeEEEEEEcCCHHHhhhHHHHHhhcCe----------E-EEE-e
Confidence 5534579999999999999999999977642 579999999999999999999999643 2 222 3
Q ss_pred cCC--CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHH
Q 019521 260 RKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 308 (340)
Q Consensus 260 r~~--~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 308 (340)
++. ...+++++.+.+..+ + ......+|+|||+ .|++.+.+.|.+
T Consensus 156 ~~~~~~~~g~v~~~l~~~~~---~-~~~~~~vyiCGP~-~m~~~~~~~l~~ 201 (248)
T cd06219 156 DDGSYGEKGFVTDPLKELIE---S-GEKVDLVIAIGPP-IMMKAVSELTRP 201 (248)
T ss_pred CCCCCCccccchHHHHHHHh---c-cCCccEEEEECCH-HHHHHHHHHHHH
Confidence 332 235677765543321 1 1224689999999 999999888865
No 67
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.90 E-value=1.3e-23 Score=192.14 Aligned_cols=171 Identities=17% Similarity=0.153 Sum_probs=131.2
Q ss_pred CCCHHHHHHhcC---CCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCC
Q 019521 102 QMPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 178 (340)
Q Consensus 102 ~~p~~~l~~~lp---~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F 178 (340)
..||||+...+| ....|+|||+|.|.. .+.++|+|+. .|..|+||.++++ |+.+.+.+|.|.|
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~-----------~G~~t~~l~~~~~--G~~l~i~gP~G~~ 90 (243)
T cd06192 25 FRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEI-----------RGPKTKLIAELKP--GEKLDVMGPLGNG 90 (243)
T ss_pred CCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEE-----------cCchHHHHHhCCC--CCEEEEEccCCCC
Confidence 368999888774 557899999999843 5889999853 3889999999999 9999999999987
Q ss_pred CCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521 179 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 257 (340)
Q Consensus 179 ~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a 257 (340)
... +..++++|||+||||||+++++++..... .+++|+||+|+.+|.+|.+||+++. . .+ ..
T Consensus 91 ~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~el~~~~-~----------~~-~~ 153 (243)
T cd06192 91 FEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG-----NKVTVLAGAKKAKEEFLDEYFELPA-D----------VE-IW 153 (243)
T ss_pred CccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC-----CeEEEEEecCcHHHHHHHHHHHhhc-C----------eE-EE
Confidence 655 44689999999999999999999987642 6799999999999999999998872 1 12 22
Q ss_pred EecCCC--CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHH
Q 019521 258 FSRKQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV 310 (340)
Q Consensus 258 ~Sr~~~--~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~ 310 (340)
.+.+.. ..+++++... . .. ..++..+|+|||+ .|++++++.|.+..
T Consensus 154 ~~~~~~~~~~g~v~~~~~----~-~~-~~~~~~v~icGp~-~mv~~~~~~l~~~g 201 (243)
T cd06192 154 TTDDGELGLEGKVTDSDK----P-IP-LEDVDRIIVAGSD-IMMKAVVEALDEWL 201 (243)
T ss_pred EecCCCCccceeechhhh----h-hh-cccCCEEEEECCH-HHHHHHHHHHHhhc
Confidence 233322 2455554311 1 11 1235689999998 99999999988764
No 68
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.90 E-value=1.9e-23 Score=188.47 Aligned_cols=157 Identities=17% Similarity=0.271 Sum_probs=119.7
Q ss_pred CCHHHHHHhcCCC-------------------CcceeecCCCCCCCC--CeEEEEEEEEEecCCCCCccCCCCccccccC
Q 019521 103 MPIDWLVQLVPPL-------------------KTRAFSISSSPLAHP--NQVHLTVSVVSWTTPYKRKRTGLCSVWLAGL 161 (340)
Q Consensus 103 ~p~~~l~~~lp~~-------------------~pR~YSIaS~p~~~~--~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l 161 (340)
.||||+...+|.. ..|+|||||+|..++ +.++|+|+. .|.+|+||.++
T Consensus 27 ~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~~ 95 (220)
T cd06197 27 TPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQV 95 (220)
T ss_pred CCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHHh
Confidence 5788877766542 359999999996542 789999853 28999999864
Q ss_pred CCCC---CcEEEEEeecCCCCCCC----CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHH
Q 019521 162 DPQQ---GIYIPAWFQKGSLPRPP----PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 234 (340)
Q Consensus 162 ~~~~---G~~v~v~~~~g~F~l~~----~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~ 234 (340)
.... |+.|.+.+|.|.|.++. ..++++||||||||||++++++++...... ..++.|+||+|+.+|.+|.+
T Consensus 96 ~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~~--~~~v~l~~~~r~~~~~~~~~ 173 (220)
T cd06197 96 ARRLREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRNT--TWDITLLWSLREDDLPLVMD 173 (220)
T ss_pred hhcccCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcccC--CCcEEEEEEecchhhHHHHH
Confidence 3222 89999999999998862 357999999999999999999998764321 26899999999999999999
Q ss_pred HHHHhHhcCCCccccCCCcEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHH
Q 019521 235 LWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 308 (340)
Q Consensus 235 eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 308 (340)
||.++.+. .. .+... + ...||+|||+ +|++++.+.+.+
T Consensus 174 el~~~~~~--~~------~~~~~-~--------------------------~~~v~~CGP~-~m~~~~~~~~~~ 211 (220)
T cd06197 174 TLVRFPGL--PV------STTLF-I--------------------------TSEVYLCGPP-ALEKAVLEWLEG 211 (220)
T ss_pred HHHhccCC--ce------EEEEE-E--------------------------eccEEEECcH-HHHHHHHHHhhh
Confidence 99887532 11 11111 1 1179999998 999988887664
No 69
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.90 E-value=5.8e-23 Score=189.09 Aligned_cols=170 Identities=18% Similarity=0.221 Sum_probs=139.7
Q ss_pred HHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCC
Q 019521 105 IDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP 181 (340)
Q Consensus 105 ~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~ 181 (340)
++++...+|. .--|+||..|++.. .+.++|.|++ ...|.+|.||.+|+. ||+|.+++|.|.|.++
T Consensus 85 g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~---------Y~~G~mS~~l~~Lki--Gd~ve~rGP~G~~~~~ 152 (286)
T KOG0534|consen 85 GQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKV---------YPKGKMSQHLDSLKI--GDTVEFRGPIGEFKYD 152 (286)
T ss_pred ceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEe---------ccCCcccHHHhcCCC--CCEEEEecCccceEec
Confidence 4555555553 35899999999865 6899999864 466999999999999 9999999999999887
Q ss_pred -CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCC-CccccCCCcEEEEEe
Q 019521 182 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFYVAFS 259 (340)
Q Consensus 182 -~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-~l~~~~~~~~~~a~S 259 (340)
+..+.+.||||||||||+.++++++.....+ ..+++|+|++++.+|.++++||+.++.++. +| ++..+.+
T Consensus 153 ~~~~~~l~miAgGtGItPmlqii~~il~~~~d--~tki~lly~N~te~DILlr~eL~~la~~~p~rf------~~~y~v~ 224 (286)
T KOG0534|consen 153 PQKAKHLGMIAGGTGITPMLQLIRAILKDPED--TTKISLLYANKTEDDILLREELEELASKYPERF------KVWYVVD 224 (286)
T ss_pred CCCcceEEEEecccchhhHHHHHHHHhcCCCC--CcEEEEEEecCCccccchHHHHHHHHhhCcceE------EEEEEEc
Confidence 6678999999999999999999999987553 478999999999999999999999998866 78 8888888
Q ss_pred cCCC----CccchhhhHHHhHHHHHHhhcC----CCEEEEeCCCCccHHH
Q 019521 260 RKQP----QKVYVQHKMLEQSQRIWNLLLS----KASIYVAGSATKMPSD 301 (340)
Q Consensus 260 r~~~----~~~yVqd~l~~~~~~l~~~l~~----~~~iyvCG~~~~M~~~ 301 (340)
+++. ..+||...+... .+.. ...++||||+ +|.+.
T Consensus 225 ~~~~~w~~~~g~It~~~i~~------~l~~~~~~~~~~liCGPp-~m~~~ 267 (286)
T KOG0534|consen 225 QPPEIWDGSVGFITKDLIKE------HLPPPKEGETLVLICGPP-PMING 267 (286)
T ss_pred CCcccccCccCccCHHHHHh------hCCCCCCCCeEEEEECCH-HHHhH
Confidence 8763 367776433322 2322 4799999999 99874
No 70
>PLN02252 nitrate reductase [NADPH]
Probab=99.89 E-value=7.4e-23 Score=215.51 Aligned_cols=191 Identities=18% Similarity=0.147 Sum_probs=141.8
Q ss_pred CCHHHHHHhcC--C-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCC
Q 019521 103 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 179 (340)
Q Consensus 103 ~p~~~l~~~lp--~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~ 179 (340)
.||||+...++ . ...|+|||+|.+.. .+.++|+|+++......+....|.+|+||.++++ |+.|.+.+|.|.|.
T Consensus 666 ~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~v--Gd~V~V~GP~G~f~ 742 (888)
T PLN02252 666 PVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPI--GDTIDVKGPLGHIE 742 (888)
T ss_pred CCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCC--CCEEEEecCcccee
Confidence 47787766653 2 35799999999853 5789999987622111122246999999999999 99999999999764
Q ss_pred C--------C-C--CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcC-CCcc
Q 019521 180 R--------P-P--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFS 247 (340)
Q Consensus 180 l--------~-~--~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~-g~l~ 247 (340)
+ + . ..++++|||+||||||++++++++...... ..+++||||+|+.+|++|++||+++.+.+ ++|
T Consensus 743 y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~d--~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~- 819 (888)
T PLN02252 743 YAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPED--KTEMSLVYANRTEDDILLREELDRWAAEHPDRL- 819 (888)
T ss_pred ecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccCC--CCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCE-
Confidence 3 2 1 247999999999999999999998765321 27899999999999999999999998765 578
Q ss_pred ccCCCcEEEEEecCC-C----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHH-HHHHHHH
Q 019521 248 EAKGGGFYVAFSRKQ-P----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSD-VWSTFEE 308 (340)
Q Consensus 248 ~~~~~~~~~a~Sr~~-~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~-v~~~L~~ 308 (340)
+++.++|++. . .+++|++.+.+.. ......+..+|+|||+ +|.+. ++..|.+
T Consensus 820 -----~v~~vls~~~~~~w~g~~GrV~~~ll~~~---l~~~~~~~~vyiCGPp-~Mi~~av~~~L~~ 877 (888)
T PLN02252 820 -----KVWYVVSQVKREGWKYSVGRVTEAMLREH---LPEGGDETLALMCGPP-PMIEFACQPNLEK 877 (888)
T ss_pred -----EEEEEecCCCcCCCCCcCCcCCHHHHHHh---cccCCCCeEEEEeCCH-HHHHHHHHHHHHH
Confidence 8888888753 1 3567766443221 1111235789999999 99874 6666654
No 71
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.88 E-value=7.3e-23 Score=190.23 Aligned_cols=175 Identities=17% Similarity=0.203 Sum_probs=137.8
Q ss_pred CCCHHHHHHhcCCC----CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecC
Q 019521 102 QMPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG 176 (340)
Q Consensus 102 ~~p~~~l~~~lp~~----~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g 176 (340)
.-+|||....++.. .|+|||||++... .++++.|+. .|..|.-|. ++++ |+++.+.+|+|
T Consensus 243 ~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~--sel~FsIK~-----------LGD~Tk~l~dnLk~--G~k~~vdGPYG 307 (438)
T COG4097 243 YQAGQFAFLKIEIEEFRMRPHPFTIACSHEG--SELRFSIKA-----------LGDFTKTLKDNLKV--GTKLEVDGPYG 307 (438)
T ss_pred ccCCceEEEEeccccccCCCCCeeeeeCCCC--ceEEEEehh-----------hhhhhHHHHHhccC--CceEEEecCcc
Confidence 46788877777654 4999999999753 478888753 599999998 5999 99999999999
Q ss_pred CCCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521 177 SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 256 (340)
Q Consensus 177 ~F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~ 256 (340)
.|...+....-|+||||+|||||+|+++....++.. .++.|||+||+.+|-+|.+||+++.+..+++ .++.
T Consensus 308 ~F~~~~g~~~QVWIAGGIGITPFis~l~~l~~~~s~---~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~------~lHi 378 (438)
T COG4097 308 KFDFERGLNTQVWIAGGIGITPFISMLFTLAERKSD---PPVHLFYCSRNWEEALYAEELRALAQKLPNV------VLHI 378 (438)
T ss_pred eeecccCCcccEEEecCcCcchHHHHHHhhcccccC---CceEEEEEecCCchhHHHHHHHHHHhcCCCe------EEEE
Confidence 999874333489999999999999999998886655 8999999999999999999999999855777 6776
Q ss_pred EEecCCCCccchh-hhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 257 AFSRKQPQKVYVQ-HKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 257 a~Sr~~~~~~yVq-d~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
..|. +++|+. +.+....+. .....||+|||. +|++++++.|++.
T Consensus 379 iDSs---~~g~l~~e~ler~~~~-----~~~~sv~fCGP~-~m~dsL~r~l~~~ 423 (438)
T COG4097 379 IDSS---KDGYLDQEDLERYPDR-----PRTRSVFFCGPI-KMMDSLRRDLKKQ 423 (438)
T ss_pred ecCC---CCCccCHHHhhccccc-----cCcceEEEEcCH-HHHHHHHHHHHHc
Confidence 4333 356663 333322111 114589999998 9999988888775
No 72
>PRK05802 hypothetical protein; Provisional
Probab=99.88 E-value=1.2e-22 Score=192.68 Aligned_cols=168 Identities=13% Similarity=0.084 Sum_probs=128.6
Q ss_pred CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecC--C
Q 019521 103 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG--S 177 (340)
Q Consensus 103 ~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g--~ 177 (340)
.||||+...+|. ...|+|||+|+|. ..+.++|+|++ .|..|++|.++++ |+.|.+.+|.| .
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~-~~g~l~l~ik~-----------~G~~T~~L~~l~~--Gd~l~v~GP~GnG~ 161 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADT-EENIIKVAIEI-----------RGVKTKKIAKLNK--GDEILLRGPYWNGI 161 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCC-CCCEEEEEEEe-----------cChhHHHHhcCCC--CCEEEEeCCCCcCc
Confidence 699999887753 3469999999985 35889999864 4899999999999 99999999985 4
Q ss_pred CCCC----CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCc
Q 019521 178 LPRP----PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGG 253 (340)
Q Consensus 178 F~l~----~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~ 253 (340)
|.++ ...+++++||+|+||||++++++++..+. .+++|+||+|+++|++|.++|+++... . .
T Consensus 162 F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~-----~~v~li~g~r~~~~~~~~~el~~~~~~---~------~ 227 (320)
T PRK05802 162 LGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG-----NKIIVIIDKGPFKNNFIKEYLELYNIE---I------I 227 (320)
T ss_pred CCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC-----CcEEEEEeCCCHHHHHHHHHHHHhhCc---e------E
Confidence 6553 23468999999999999999999987653 469999999999999999999998644 1 1
Q ss_pred EEEEEecCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 254 FYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 254 ~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
+..... +.. .+++|++.+.+. +...||+|||. .|.+.|.+.+.+.
T Consensus 228 ~~~~~d-dG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP~-~M~k~v~~~l~~~ 276 (320)
T PRK05802 228 ELNLLD-DGELSEEGKDILKEIIKKE---------DINLIHCGGSD-ILHYKIIEYLDKL 276 (320)
T ss_pred EEEecc-cCCCCccccchHHHHhcCC---------CCCEEEEECCH-HHHHHHHHHHhhh
Confidence 111111 211 133444444321 24789999998 9999999988774
No 73
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.87 E-value=7e-22 Score=215.28 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=140.9
Q ss_pred CCCHHHHHHhcC--C-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecC--
Q 019521 102 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-- 176 (340)
Q Consensus 102 ~~p~~~l~~~lp--~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g-- 176 (340)
..||||+...++ + ...|+|||+|.|. ..+.++|+|+ ...|.+|+||.++++ |++|.+.+|.|
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr----------~~~G~~S~~L~~l~~--Gd~v~v~gp~G~~ 1014 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILAR----------GDKGTLKEWISALRP--GDSVEMKACGGLR 1014 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEE----------cCCChhHHHHhhCCC--CCEEEEeCCcCcc
Confidence 378999887764 2 2469999999995 4578999874 246999999999999 99999999655
Q ss_pred --------CCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCC-Cc
Q 019521 177 --------SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VF 246 (340)
Q Consensus 177 --------~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-~l 246 (340)
.|.++ ...+|+||||+|||||||++|++++..........+++||||+|+.+|++|++||++|.+.++ +|
T Consensus 1015 ~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f 1094 (1167)
T PTZ00306 1015 IERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKF 1094 (1167)
T ss_pred ccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCE
Confidence 35555 556899999999999999999998876531011268999999999999999999999987644 58
Q ss_pred cccCCCcEEEEEecCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 247 SEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 247 ~~~~~~~~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
++++++|+++. ..++|++.+.+. +......+..+|+|||+ +|.+.+++.|.+.
T Consensus 1095 ------~~~~~ls~~~~~w~~~~G~i~~~~l~~---~l~~~~~~~~vyiCGP~-~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1095 ------KCHFVLNNPPEGWTDGVGFVDRALLQS---ALQPPSKDLLVAICGPP-VMQRAVKADLLAL 1151 (1167)
T ss_pred ------EEEEEECCCCcccCCCCCCCCHHHHHH---hcCCCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence 88999987543 246666543222 11111235789999999 9999998888664
No 74
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.85 E-value=3.9e-21 Score=201.94 Aligned_cols=172 Identities=18% Similarity=0.212 Sum_probs=134.8
Q ss_pred CCCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEE-EEEeecCCCC
Q 019521 102 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLP 179 (340)
Q Consensus 102 ~~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~v~~~~g~F~ 179 (340)
..||||+...++.. .+|+|||+|.+.. .+.++|+|+++ |..|.+|.++++ |+.| .+.+|.|.|.
T Consensus 28 ~~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~v-----------G~~T~~L~~l~~--Gd~v~~v~GP~G~~~ 93 (752)
T PRK12778 28 RKPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQEV-----------GLSTTKLCELNE--GDYITDVVGPLGNPS 93 (752)
T ss_pred CCCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEEc-----------CchHHHHhcCCC--CCEeCeEeCCCCCCc
Confidence 36999998887643 4689999998853 57899999653 899999999999 9999 7999999877
Q ss_pred CCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521 180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259 (340)
Q Consensus 180 l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S 259 (340)
.....++++|||+|+||||+++++++..... .++++|||+|+.+|++|.+||+++... + .++ +
T Consensus 94 ~~~~~~~~llvaGG~GiaPl~~l~~~l~~~~-----~~v~l~~g~r~~~~l~~~~el~~~~~~---~--------~~~-t 156 (752)
T PRK12778 94 EIENYGTVVCAGGGVGVAPMLPIVKALKAAG-----NRVITILGGRSKELIILEDEMRESSDE---V--------IIM-T 156 (752)
T ss_pred cCCCCCeEEEEECCEeHHHHHHHHHHHHHCC-----CeEEEEeccCCHHHhhhHHHHHhhcCe---E--------EEE-E
Confidence 6533479999999999999999999887653 579999999999999999999988643 2 111 2
Q ss_pred cCC--CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 260 RKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 260 r~~--~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
.+. ..+++|++.+.+.... ..+...||+|||+ +|++.+.+.+.+.
T Consensus 157 ~dg~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP~-~M~~~v~~~l~~~ 203 (752)
T PRK12778 157 DDGSYGRKGLVTDGLEEVIKR----ETKVDKVFAIGPA-IMMKFVCLLTKKY 203 (752)
T ss_pred CCCCCCCcccHHHHHHHHhhc----CCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 222 2467888866543211 1124579999999 9999998887653
No 75
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.83 E-value=1.1e-20 Score=168.72 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=122.3
Q ss_pred CCCHHHHHHhcCCC----CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCC------CCCCcEEEE
Q 019521 102 QMPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD------PQQGIYIPA 171 (340)
Q Consensus 102 ~~p~~~l~~~lp~~----~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~------~~~G~~v~v 171 (340)
..||||+...+|.. +.|+|||+|.|....+.++|+|+. ..|.+|..+..+. . |+.+.+
T Consensus 25 ~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~----------~~G~~t~~~~~~~~~~~~~~--~~~v~v 92 (210)
T cd06186 25 WKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRA----------KKGFTTRLLRKALKSPGGGV--SLKVLV 92 (210)
T ss_pred cCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEe----------cCChHHHHHHHHHhCcCCCc--eeEEEE
Confidence 46899999888864 789999999985435889999853 2388888777775 6 899999
Q ss_pred EeecCCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC-CCCCEEEEEeccCCch-hhhHHHHHHhHhcCCCccc
Q 019521 172 WFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNEDD-FLYRELWLSHSLNDGVFSE 248 (340)
Q Consensus 172 ~~~~g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~~d-~ly~~eL~~~~~~~g~l~~ 248 (340)
.+|.|.+..+ ...+++||||+||||||++++++++....... ...++.|+|++|+.+| ..|.++|.+..+. ....
T Consensus 93 ~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~~~~~~~~~l~~~~~~-~~~~- 170 (210)
T cd06186 93 EGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLEWFLDELRAAQEL-EVDG- 170 (210)
T ss_pred ECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHHHhHHHHHHHHhhhhc-cCCc-
Confidence 9999988744 55679999999999999999999998764200 1278999999999997 5799999862111 1100
Q ss_pred cCCCcEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHH
Q 019521 249 AKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 308 (340)
Q Consensus 249 ~~~~~~~~a~Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 308 (340)
++.+.+++ +|+|||+ .|.+++++...+
T Consensus 171 ----~~~i~~T~----------------------------v~~CGp~-~~~~~~~~~~~~ 197 (210)
T cd06186 171 ----EIEIYVTR----------------------------VVVCGPP-GLVDDVRNAVAK 197 (210)
T ss_pred ----eEEEEEee----------------------------EEEECch-hhccHHHHHHhh
Confidence 12333332 8999998 999999887776
No 76
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.83 E-value=1.6e-20 Score=170.91 Aligned_cols=169 Identities=15% Similarity=0.131 Sum_probs=121.0
Q ss_pred CCHHHHHHhcCC----------------------CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccC-CCCccccc
Q 019521 103 MPIDWLVQLVPP----------------------LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLA 159 (340)
Q Consensus 103 ~p~~~l~~~lp~----------------------~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~-G~~S~~L~ 159 (340)
.||||+...+|. ...|+|||+|.+. ..+.++|.|.. ... |.+|+||.
T Consensus 28 ~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~-~~~~l~~~v~~---------~~~~G~~s~~l~ 97 (235)
T cd06193 28 GPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDP-EAGELDIDFVL---------HGDEGPASRWAA 97 (235)
T ss_pred CCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcC-CCCEEEEEEEe---------CCCCCchHHHHh
Confidence 589998777653 3469999999874 35889999853 234 99999999
Q ss_pred cCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHh
Q 019521 160 GLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSH 239 (340)
Q Consensus 160 ~l~~~~G~~v~v~~~~g~F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~ 239 (340)
++++ ||.|.+.+|.|.|.++...++++|||+||||||+++++++.... .+++++|++|+.+|.++.++
T Consensus 98 ~l~~--Gd~v~v~gP~G~~~~~~~~~~~vlia~GtGi~p~~~il~~~~~~------~~~~~~~~~~~~~d~~~l~~---- 165 (235)
T cd06193 98 SAQP--GDTLGIAGPGGSFLPPPDADWYLLAGDETALPAIAAILEELPAD------ARGTALIEVPDAADEQPLPA---- 165 (235)
T ss_pred hCCC--CCEEEEECCCCCCCCCCCcceEEEEeccchHHHHHHHHHhCCCC------CeEEEEEEECCHHHccccCC----
Confidence 9999 99999999999998875557999999999999999999977542 57999999999976543222
Q ss_pred HhcCCCccccCCCcEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHH
Q 019521 240 SLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 308 (340)
Q Consensus 240 ~~~~g~l~~~~~~~~~~a~Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 308 (340)
. .++ +++.+.+.+.. .......+. .. .....++..+|+|||+ .|++.+++.|.+
T Consensus 166 --~-~~~------~~~~~~~~~~~-~~~~~~~~~---~~-~~~~~~~~~vyicGp~-~mv~~v~~~l~~ 219 (235)
T cd06193 166 --P-AGV------EVTWLHRGGAE-AGELALLAV---RA-LAPPAGDGYVWIAGEA-GAVRALRRHLRE 219 (235)
T ss_pred --C-CCc------EEEEEeCCCCC-cchhHHHHH---hc-ccCCCCCeEEEEEccH-HHHHHHHHHHHH
Confidence 2 345 55555443332 111111000 00 0011235799999998 999888777654
No 77
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.80 E-value=3.1e-19 Score=190.22 Aligned_cols=180 Identities=11% Similarity=0.033 Sum_probs=130.9
Q ss_pred CCHHHHHHhcC-CCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEE-EEeecCCCC-
Q 019521 103 MPIDWLVQLVP-PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP-AWFQKGSLP- 179 (340)
Q Consensus 103 ~p~~~l~~~lp-~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~-v~~~~g~F~- 179 (340)
.||||+...++ +-..|+|||+|.+. ..+.++|+|+.+ |..|.+|.++++ |+.+. +.+|.|.|.
T Consensus 678 ~PGQFv~L~~~~~ge~rP~SIas~~~-~~g~i~l~Vk~v-----------G~~T~~L~~lk~--Gd~l~~I~GPlG~~f~ 743 (944)
T PRK12779 678 QAGQFVRVLPWEKGELIPLTLADWDA-EKGTIDLVVQGM-----------GTSSLEINRMAI--GDAFSGIAGPLGRASE 743 (944)
T ss_pred CCCceEEEEeCCCCCEEeEEccCCCC-CCCEEEEEEEee-----------ccHHHHHhcCCC--cCEEeeeecCCCCCcC
Confidence 59999887764 33459999999874 357899998643 888999999999 99995 999999764
Q ss_pred CC--CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHH---HHhHhcCCC-ccccCCCc
Q 019521 180 RP--PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELW---LSHSLNDGV-FSEAKGGG 253 (340)
Q Consensus 180 l~--~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL---~~~~~~~g~-l~~~~~~~ 253 (340)
++ ...++++|||||+||||+++++++....+ .+++|+||+|+.+|++|.+++ ++|.+.++. + .
T Consensus 744 ~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g-----~~V~li~G~Rs~edl~~~del~~L~~la~~~~~~~------~ 812 (944)
T PRK12779 744 LHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG-----NHVTLISGFRAKEFLFWTGDDERVGKLKAEFGDQL------D 812 (944)
T ss_pred CccccCCCcEEEEEccEeHHHHHHHHHHHHHCC-----CCEEEEEEeCCHHHhhhHHHHHHHHHHHHHcCCCe------E
Confidence 43 23479999999999999999999887643 579999999999898887664 555554342 3 4
Q ss_pred EEEEEecCC--CCccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 254 FYVAFSRKQ--PQKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 254 ~~~a~Sr~~--~~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
++++ +.+. ..+++|++.+.+..+.....-. ....||+|||+ +|++.+.+.+.+.
T Consensus 813 v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP~-~Mmkav~~~l~~~ 869 (944)
T PRK12779 813 VIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGPP-LMMRAVSDLTKPY 869 (944)
T ss_pred EEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECCH-HHHHHHHHHHHHc
Confidence 4433 3332 2467888876543221100000 13679999999 9999998887654
No 78
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.79 E-value=3.2e-19 Score=142.53 Aligned_cols=104 Identities=23% Similarity=0.333 Sum_probs=81.2
Q ss_pred EEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCC-ccccCCCcEEEEEecCCC----
Q 019521 189 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGV-FSEAKGGGFYVAFSRKQP---- 263 (340)
Q Consensus 189 ~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~-l~~~~~~~~~~a~Sr~~~---- 263 (340)
|||+|||||||+|+++++...... .+++||||+|+.+|++|+++|+++.+.... + ++..+ ++.+.
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~------~~~~~-~~~~~~~~~ 70 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERNDN---RKVTLFYGARTPEDLLFRDELEALAQEYPNRF------HVVYV-SSPDDGWDG 70 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTCT---SEEEEEEEESSGGGSTTHHHHHHHHHHSTTCE------EEEEE-TTTTSSTTS
T ss_pred CeecceeHHHHHHHHHHHHHhCCC---CCEEEEEEEcccccccchhHHHHHHhhccccc------ccccc-cccccccCC
Confidence 799999999999999999987544 899999999999999999999999876333 5 44444 33322
Q ss_pred CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHH
Q 019521 264 QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWS 304 (340)
Q Consensus 264 ~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~ 304 (340)
.++||++.+.+.... ......+..||+|||+ +|.++|++
T Consensus 71 ~~g~v~~~~~~~~~~-~~~~~~~~~v~iCGp~-~m~~~v~~ 109 (109)
T PF00175_consen 71 FKGRVTDLLLEDLLP-EKIDPDDTHVYICGPP-PMMKAVRK 109 (109)
T ss_dssp EESSHHHHHHHHHHH-HHHCTTTEEEEEEEEH-HHHHHHHH
T ss_pred ceeehhHHHHHhhcc-cccCCCCCEEEEECCH-HHHHHhcC
Confidence 378999988655333 2222348999999998 99998864
No 79
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.79 E-value=5.3e-19 Score=189.85 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=130.4
Q ss_pred CCCHHHHHHhcCC-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccc-ccCCCCCCcEE-EEEeecCCC
Q 019521 102 QMPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQGIYI-PAWFQKGSL 178 (340)
Q Consensus 102 ~~p~~~l~~~lp~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~~~G~~v-~v~~~~g~F 178 (340)
..||||++..++. ..+|+|||++.+. ..+.++|.|++ .|..|.|| .++++ ||.| .+.+|.|.+
T Consensus 28 ~~PGQFV~l~~~~~~errplSIa~~~~-~~g~i~l~vk~-----------vG~~T~~L~~~lk~--Gd~l~~v~GPlG~~ 93 (1006)
T PRK12775 28 AEPGHFVMLRLYEGAERIPLTVADFDR-KKGTITMVVQA-----------LGKTTREMMTKFKA--GDTFEDFVGPLGLP 93 (1006)
T ss_pred CCCCeeEEEEeCCCCeeEEEEecCcCC-CCCEEEEEEEe-----------cCcHHHHHHhcCCC--CCEEeeeecCCCCC
Confidence 3699999888753 3579999999774 35789999864 38999998 58999 9999 799999976
Q ss_pred CCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521 179 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258 (340)
Q Consensus 179 ~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~ 258 (340)
......++++|||||+||||+++++++....+ .+++++||+|+.++++|.+||+.+... + +++
T Consensus 94 ~~~~~~~~vllVaGGiGIAPl~s~~r~l~~~g-----~~v~li~g~R~~~~l~~~del~~~~~~---~--------~v~- 156 (1006)
T PRK12775 94 QHIDKAGHVVLVGGGLGVAPVYPQLRAFKEAG-----ARTTGIIGFRNKDLVFWEDKFGKYCDD---L--------IVC- 156 (1006)
T ss_pred CCCCCCCeEEEEEEhHHHHHHHHHHHHHHhCC-----CcEEEEEeCCChHHcccHHHHHhhcCc---E--------EEE-
Confidence 54433478999999999999999999876643 569999999999999999999876532 2 222
Q ss_pred ecCC--CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521 259 SRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 309 (340)
Q Consensus 259 Sr~~--~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 309 (340)
+.+. ..+++|++.+.+..+. .....+|+|||+ .|++.+.+.+++.
T Consensus 157 tddgs~G~~G~vt~~l~~~l~~-----~~~d~vy~CGP~-~Mm~av~~~~~~~ 203 (1006)
T PRK12775 157 TDDGSYGKPGFVTAALKEVCEK-----DKPDLVVAIGPL-PMMNACVETTRPF 203 (1006)
T ss_pred ECCCCCCCCCChHHHHHHHhcc-----CCCCEEEEECCH-HHHHHHHHHHHHC
Confidence 2222 2467888876543111 124589999999 9999998887653
No 80
>PLN02292 ferric-chelate reductase
Probab=99.65 E-value=7.8e-16 Score=158.19 Aligned_cols=172 Identities=18% Similarity=0.207 Sum_probs=122.4
Q ss_pred CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCc-----EEEEEe
Q 019521 103 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGI-----YIPAWF 173 (340)
Q Consensus 103 ~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~-----~v~v~~ 173 (340)
.|||++...+|. .+.|||||+|+|..+++.++++|+. .|..|++|.+ ++. |+ +|.+.|
T Consensus 353 ~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~--gd~i~~~~V~VeG 419 (702)
T PLN02292 353 SPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSS--SDQIDRLAVSVEG 419 (702)
T ss_pred CCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCC--CCccccceEEEEC
Confidence 689888777775 3789999999985456789999852 4778888874 566 77 467999
Q ss_pred ecCCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC--CCCCEEEEEeccCCchhhhHHHHHH-------hHhcC
Q 019521 174 QKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLS-------HSLND 243 (340)
Q Consensus 174 ~~g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~eL~~-------~~~~~ 243 (340)
|+|.+..+ ...++++|||||+||||+++++++...+.... ...++.|+|++|+.+|..+.+++.. +.++
T Consensus 420 PYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~- 498 (702)
T PLN02292 420 PYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSF- 498 (702)
T ss_pred CccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhc-
Confidence 99987655 44579999999999999999999988754221 1267999999999999988765443 2233
Q ss_pred CCccccCCCcEEEEEecCCCCcc-chhhhHHHhHHHHHHhh-----cCCCEEEEeCCCCcc
Q 019521 244 GVFSEAKGGGFYVAFSRKQPQKV-YVQHKMLEQSQRIWNLL-----LSKASIYVAGSATKM 298 (340)
Q Consensus 244 g~l~~~~~~~~~~a~Sr~~~~~~-yVqd~l~~~~~~l~~~l-----~~~~~iyvCG~~~~M 298 (340)
.++ ++...++|+.+.+. |-++ ..+.+.+.+ .+...+.+|||+..+
T Consensus 499 ~~~------~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~ 549 (702)
T PLN02292 499 IDI------QIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPNSWL 549 (702)
T ss_pred CCc------eEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCCchH
Confidence 456 78888888765321 1111 112221221 136789999998443
No 81
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.65 E-value=1.1e-15 Score=157.50 Aligned_cols=174 Identities=18% Similarity=0.176 Sum_probs=125.0
Q ss_pred CCHHHHHHhcCCC---CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-----CCCCCC------cE
Q 019521 103 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-----LDPQQG------IY 168 (340)
Q Consensus 103 ~p~~~l~~~lp~~---~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-----l~~~~G------~~ 168 (340)
.|||++...+|.. +.|+|||+|+|..+++.++++|++ . |-.|+.|.+ +.+ | .+
T Consensus 340 ~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~----------~-gG~T~~L~~~i~~~l~~--g~~~~~~~~ 406 (722)
T PLN02844 340 APTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKC----------E-GGWTNSLYNKIQAELDS--ETNQMNCIP 406 (722)
T ss_pred CCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEe----------C-CCchHHHHHHHHhhccC--CCCcccceE
Confidence 6899988888754 689999999875556788998853 2 444555532 223 3 37
Q ss_pred EEEEeecCCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC--CCCCEEEEEeccCCchhhhHHHHHH-----hH
Q 019521 169 IPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLS-----HS 240 (340)
Q Consensus 169 v~v~~~~g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~eL~~-----~~ 240 (340)
+.+.+|+|.+..+ ...++++||||||||||+++++++...+.... ...++.|+|++|+.+|..|.+++.. +.
T Consensus 407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~~~ 486 (722)
T PLN02844 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQDICLLNPISSLLLNQSS 486 (722)
T ss_pred EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhhHHHHHHHhHHhHH
Confidence 8899999998766 44579999999999999999999998743211 1267999999999999999998763 22
Q ss_pred hcCCCccccCCCcEEEEEecCCCCccchhhhHHHh--HHHHHHhhcCCCEEEEeCCCCc
Q 019521 241 LNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQ--SQRIWNLLLSKASIYVAGSATK 297 (340)
Q Consensus 241 ~~~g~l~~~~~~~~~~a~Sr~~~~~~yVqd~l~~~--~~~l~~~l~~~~~iyvCG~~~~ 297 (340)
+. .++ +++...+|++.....+++.+... .+.++ +-.+...+.+||+...
T Consensus 487 ~~-~~l------kl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~~~ 537 (722)
T PLN02844 487 NQ-LNL------KLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLESF 537 (722)
T ss_pred Hh-cCc------eEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCCch
Confidence 33 355 77888999877555666666552 12222 1123678999999743
No 82
>PLN02631 ferric-chelate reductase
Probab=99.63 E-value=8.7e-16 Score=157.57 Aligned_cols=142 Identities=19% Similarity=0.233 Sum_probs=111.5
Q ss_pred CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCc--EEEEEeecC
Q 019521 103 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGI--YIPAWFQKG 176 (340)
Q Consensus 103 ~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~--~v~v~~~~g 176 (340)
.|||++...+|. .+.|+|||+|+|..+++.++++|+ ..|..|++|.+ ++. .|+ +|.+.||+|
T Consensus 336 ~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK-----------~~Gg~T~~L~~~l~~-~g~~i~V~VeGPYG 403 (699)
T PLN02631 336 TPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIR-----------RQGSWTQKLYTHLSS-SIDSLEVSTEGPYG 403 (699)
T ss_pred CCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEE-----------cCChHHHHHHHhhhc-CCCeeEEEEECCCC
Confidence 689998888775 467999999998545678999985 24888999974 432 144 677889999
Q ss_pred CCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC--CCCCEEEEEeccCCchhhhHHHHHHh------HhcCCCcc
Q 019521 177 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSH------SLNDGVFS 247 (340)
Q Consensus 177 ~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~eL~~~------~~~~g~l~ 247 (340)
.|..+ ...++++|||||+||||++|++++...+.... +.+++.|+|++|+.+|.+|.|||+.+ .++ -++
T Consensus 404 ~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~-~ni- 481 (699)
T PLN02631 404 PNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISR-LNL- 481 (699)
T ss_pred CCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhc-Cce-
Confidence 87766 55678999999999999999999998754321 23589999999999999999999863 223 467
Q ss_pred ccCCCcEEEEEecCCC
Q 019521 248 EAKGGGFYVAFSRKQP 263 (340)
Q Consensus 248 ~~~~~~~~~a~Sr~~~ 263 (340)
++...+||+++
T Consensus 482 -----~i~iyVTR~~~ 492 (699)
T PLN02631 482 -----RIEAYITREDK 492 (699)
T ss_pred -----EEEEEEcCCCC
Confidence 88888999754
No 83
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.38 E-value=1.7e-13 Score=123.01 Aligned_cols=176 Identities=21% Similarity=0.263 Sum_probs=110.5
Q ss_pred CCHHHHHH--hcCCC---CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecC
Q 019521 103 MPIDWLVQ--LVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG 176 (340)
Q Consensus 103 ~p~~~l~~--~lp~~---~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g 176 (340)
.|||++.. ..|++ .-|.||.+++.....+.+.|.|+ +...|+.|+|++ ++++ ||.|.++.|.|
T Consensus 182 ~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr---------~~A~G~VS~~~H~~~KV--GD~v~~S~PAG 250 (385)
T KOG3378|consen 182 HPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVR---------RVAGGVVSNFVHDNLKV--GDIVGVSPPAG 250 (385)
T ss_pred CCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEe---------ehhchhhHHHhhccccc--cceeeccCCCc
Confidence 57887543 34544 24666666655445688999984 446799999998 7999 99999999999
Q ss_pred CCCCC----CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCC
Q 019521 177 SLPRP----PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGG 252 (340)
Q Consensus 177 ~F~l~----~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~ 252 (340)
.|.+. +.++|++++|+|+||+|++++++....-... +++ +.--..-|.-|++-+
T Consensus 251 ~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C~~~---RP~---~~~~~~~~~K~k~~~---------------- 308 (385)
T KOG3378|consen 251 NFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLCYSS---RPF---KQWLEQLKLKYKENL---------------- 308 (385)
T ss_pred cceeehhhhccCCceEEecCCcCccccHHHHHHHHhcCCC---CcH---HHHHHHHHHHHHHHH----------------
Confidence 99875 6779999999999999999999987652221 111 000000011122111
Q ss_pred cEEEEEecCCC--CccchhhhHHHh--HHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHH
Q 019521 253 GFYVAFSRKQP--QKVYVQHKMLEQ--SQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSK 312 (340)
Q Consensus 253 ~~~~a~Sr~~~--~~~yVqd~l~~~--~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~ 312 (340)
++.-.||.+.. ++..|...+... .+.+-++-...++||.|||. .+++.|.+.|.++..+
T Consensus 309 K~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~~~~~s~~DiY~~G~~-~~M~~~~~~L~~L~~~ 371 (385)
T KOG3378|consen 309 KLKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLDLSECDIYMLGPN-NYMRFVKQELVKLGVE 371 (385)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhcCHHHhhhcChhhCceeeeCcH-HHHHHHHHHHHHhcCC
Confidence 11111222211 123333333221 22222222238999999998 8889999999987554
No 84
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.92 E-value=3.7e-09 Score=89.74 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=49.9
Q ss_pred CCeEEEeCCcchhhHHHHHHHHHHhcCCC--CCCCEEEEEeccCCchh-hhHHHHHHhHhcC--CCccccCCCcEEEEEe
Q 019521 185 VPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDF-LYRELWLSHSLND--GVFSEAKGGGFYVAFS 259 (340)
Q Consensus 185 ~pii~Ia~GtGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~-ly~~eL~~~~~~~--g~l~~~~~~~~~~a~S 259 (340)
..++|||||+||+|+++++++.......+ ...++.|+|..|+.+++ .|.++|+++.... ..+ ++.+.++
T Consensus 2 ~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~------~~~iyvT 75 (156)
T PF08030_consen 2 DNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNV------EVHIYVT 75 (156)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSE------EEEEEET
T ss_pred CEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccc------eEEEEEc
Confidence 35899999999999999999998765411 45789999999999944 6776666554321 356 6777776
Q ss_pred cCC
Q 019521 260 RKQ 262 (340)
Q Consensus 260 r~~ 262 (340)
++.
T Consensus 76 ~~~ 78 (156)
T PF08030_consen 76 RES 78 (156)
T ss_dssp T--
T ss_pred CCc
Confidence 654
No 85
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.88 E-value=7.5e-09 Score=106.94 Aligned_cols=126 Identities=20% Similarity=0.317 Sum_probs=91.3
Q ss_pred CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CC----C--CC----CcE
Q 019521 103 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LD----P--QQ----GIY 168 (340)
Q Consensus 103 ~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~----~--~~----G~~ 168 (340)
.|||++...+|. ++.+||||+|+| +++.+.++|+.+ |..|+-|.+ +. + .+ .-+
T Consensus 383 ~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~~ 449 (646)
T KOG0039|consen 383 KPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFPK 449 (646)
T ss_pred CCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCce
Confidence 579998888885 489999999999 468999999754 555555531 11 0 01 347
Q ss_pred EEEEeecCCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC-------------CCCCEEEEEeccCCchh-hhH
Q 019521 169 IPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-------------PAAPIIFFFGCRNEDDF-LYR 233 (340)
Q Consensus 169 v~v~~~~g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~-------------~~~~~~L~~G~R~~~d~-ly~ 233 (340)
+.+.||+|.=..+ ..-..++|||+|.|++||.|++++.......+ ..+++..+|-||...++ .+.
T Consensus 450 i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~ 529 (646)
T KOG0039|consen 450 ILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFK 529 (646)
T ss_pred EEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHHHH
Confidence 8899999965544 44457799999999999999999999864322 24677888888888844 456
Q ss_pred HHHHHhHh
Q 019521 234 ELWLSHSL 241 (340)
Q Consensus 234 ~eL~~~~~ 241 (340)
+.+.+..+
T Consensus 530 ~~l~~v~~ 537 (646)
T KOG0039|consen 530 GLLTEVEE 537 (646)
T ss_pred HHHHHHHH
Confidence 66665553
No 86
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.60 E-value=6.8e-08 Score=102.34 Aligned_cols=81 Identities=14% Similarity=0.065 Sum_probs=69.0
Q ss_pred CCHHHHHHhcCC-----C-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecC
Q 019521 103 MPIDWLVQLVPP-----L-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG 176 (340)
Q Consensus 103 ~p~~~l~~~lp~-----~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g 176 (340)
.||||++...+. + .||++||++.+.. .+.++|+|.+| |..|..|+++++ |+.+.+.||.|
T Consensus 820 kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvV-----------GkgT~~Ls~l~~--Gd~v~v~GPLG 885 (1028)
T PRK06567 820 KFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEV-----------GKSTSLCKTLSE--NEKVVLMGPTG 885 (1028)
T ss_pred CCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEE-----------ChHHHHHhcCCC--CCEEEEEcccC
Confidence 599999887742 2 6789999998643 57899999877 999999999999 99999999999
Q ss_pred -CCCCCCCCCCeEEEeCCcchhh
Q 019521 177 -SLPRPPPSVPLILIGPGTGCAP 198 (340)
Q Consensus 177 -~F~l~~~~~pii~Ia~GtGIAP 198 (340)
.|..+. .+.+++||||+|+||
T Consensus 886 ~pF~i~~-~k~vLLVgGGVGiAp 907 (1028)
T PRK06567 886 SPLEIPQ-NKKIVIVDFEVGNIG 907 (1028)
T ss_pred CCCCCCC-CCeEEEEEccccHHH
Confidence 577763 368999999999998
No 87
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=98.56 E-value=1e-08 Score=80.40 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=55.5
Q ss_pred CCCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCC
Q 019521 102 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 178 (340)
Q Consensus 102 ~~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F 178 (340)
..|||++...++. ...|+|||+|.|. ..+.++|+|+. ...|.+|+||.++++ ||.|.+.+|.|.|
T Consensus 30 ~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~---------~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f 97 (99)
T PF00970_consen 30 FKPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKR---------YPNGRVSRYLHQLKP--GDEVEIRGPYGNF 97 (99)
T ss_dssp STTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEE---------CTTSHHHHHHHTSCT--TSEEEEEEEESSE
T ss_pred cCcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEe---------ccCCHHHHHHHhCCC--CCEEEEEEccccc
Confidence 3689998888882 3469999999995 46799999854 478999999999999 9999999999998
Q ss_pred C
Q 019521 179 P 179 (340)
Q Consensus 179 ~ 179 (340)
.
T Consensus 98 ~ 98 (99)
T PF00970_consen 98 T 98 (99)
T ss_dssp E
T ss_pred C
Confidence 5
No 88
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=97.86 E-value=0.0003 Score=64.62 Aligned_cols=167 Identities=16% Similarity=0.217 Sum_probs=107.5
Q ss_pred CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCc
Q 019521 115 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT 194 (340)
Q Consensus 115 ~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~~~~~pii~Ia~Gt 194 (340)
.-+|.|||.+-.. ..+++.|-| | -....|.+|.|-.+.++ ||+|.+.+|.|.+..+....-++|||==|
T Consensus 85 ~~~R~YTiR~~d~-~~~e~~vDf--V------lH~~~gpas~WA~~a~~--GD~l~i~GP~g~~~p~~~~~~~lLigDet 153 (265)
T COG2375 85 PPQRTYTIRAVDA-AAGELDVDF--V------LHGEGGPASRWARTAQP--GDTLTIMGPRGSLVPPEAADWYLLIGDET 153 (265)
T ss_pred CCcccceeeeecc-cccEEEEEE--E------EcCCCCcchhhHhhCCC--CCEEEEeCCCCCCCCCCCcceEEEecccc
Confidence 3589999986542 234444443 3 22368999999999999 99999999999987776667899999999
Q ss_pred chhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCCCccchhhhHHH
Q 019521 195 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLE 274 (340)
Q Consensus 195 GIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~~~~yVqd~l~~ 274 (340)
++-.+.++|++.-.. .+...|.-..+..|. .+ +... +.+ .+.-. .|++.. + ...+..
T Consensus 154 AlPAIa~iLE~lp~~------~~~~a~lev~d~ad~---~~---l~~~-~~l------~~~Wl-~r~~~~--~-~~ll~~ 210 (265)
T COG2375 154 ALPAIARILETLPAD------TPAEAFLEVDDAADR---DE---LPSP-DDL------ELEWL-ARDDAP--T-EQLLAA 210 (265)
T ss_pred chHHHHHHHHhCCCC------CceEEEEEeCChHHh---hc---cCCC-Cce------eEEEe-cCCCcc--c-hHHHHH
Confidence 999999998876543 455777777777765 22 2222 334 33332 333221 1 112222
Q ss_pred hHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHH
Q 019521 275 QSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 322 (340)
Q Consensus 275 ~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~ 322 (340)
...+. .+.+ +.++||.|-. .+++ .+++.+.++.|+++....
T Consensus 211 a~~~~--~~P~~~~~vwiagE~-~~v~----~~Rk~L~~e~g~dk~~i~ 252 (265)
T COG2375 211 ALAQA--ALPAGDYYVWIAGEA-SAVK----AIRKFLRNERGFDKSRVR 252 (265)
T ss_pred HHhcc--cCCCCceEEEEeccH-HHHH----HHHHHHhhhcCCCHHHhh
Confidence 21110 1122 4799999997 5555 456666667777766543
No 89
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=94.32 E-value=0.0064 Score=48.19 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=4.1
Q ss_pred CCCHHHHHHhcCCC-----CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCC------CCCCcEEE
Q 019521 102 QMPIDWLVQLVPPL-----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD------PQQGIYIP 170 (340)
Q Consensus 102 ~~p~~~l~~~lp~~-----~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~------~~~G~~v~ 170 (340)
-.|||++...+|.+ +.+||||+|+|. ++.+.++|+. .|-.|..|.+.. ...+-++.
T Consensus 30 ~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~-----------~g~~T~~L~~~~~~~~~~~~~~~~v~ 96 (105)
T PF08022_consen 30 WKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKA-----------RGGWTKRLYEHLSESPSKQGNRLRVF 96 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEe-----------CCCchHHHHHHHhhhcccCCCceEEE
Confidence 36999999988854 678999999996 5889998853 355666665431 10134555
Q ss_pred EEeecC
Q 019521 171 AWFQKG 176 (340)
Q Consensus 171 v~~~~g 176 (340)
+.||+|
T Consensus 97 idGPYG 102 (105)
T PF08022_consen 97 IDGPYG 102 (105)
T ss_dssp TTSTTS
T ss_pred EECCCC
Confidence 666776
No 90
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=93.18 E-value=0.04 Score=44.57 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=30.1
Q ss_pred CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCC
Q 019521 116 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 178 (340)
Q Consensus 116 ~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F 178 (340)
..|.|||.+.... .+++.|-|.+ ....|.+|.|..+.++ ||.|.+.+|.|.|
T Consensus 66 ~~R~YTvR~~d~~-~~~l~iDfv~--------Hg~~Gpas~WA~~A~p--Gd~v~v~gP~g~~ 117 (117)
T PF08021_consen 66 VMRTYTVRRFDPE-TGELDIDFVL--------HGDEGPASRWARSARP--GDRVGVTGPRGSF 117 (117)
T ss_dssp EEEEEE--EEETT---EEEEEEE----------SS--HHHHHHHH--T--T-EEEEEEEE---
T ss_pred CCCCcCEeeEcCC-CCEEEEEEEE--------CCCCCchHHHHhhCCC--CCEEEEeCCCCCC
Confidence 5799999987532 3566665532 2234999999999999 9999999999887
No 91
>KOG4723 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.56 E-value=7.2 Score=34.59 Aligned_cols=115 Identities=8% Similarity=0.036 Sum_probs=67.2
Q ss_pred CCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCC
Q 019521 216 APIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGS 294 (340)
Q Consensus 216 ~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~ 294 (340)
++++|+.+||... .|+++.-|....+. . -+ ..+++|++.-++...+-..+.-. +.-.-.++..+|+=|=
T Consensus 19 gkltLl~d~~eT~gsFl~H~~l~~~Lka-n-~~-----~cFlaf~k~fshy~i~~rKlG~~---l~t~k~rgqlvF~dgl 88 (248)
T KOG4723|consen 19 GKLTLLLDTRETPGSFLFHYYLYHALKA-N-ES-----TCFLAFSKTFSHYAISMRKLGMD---LKTKKNRGQLVFIDGL 88 (248)
T ss_pred ccEEEEeecccCCceeeHHHHHHHHHhc-C-Cc-----EEEEEeecchhHHHHHHHHhCCc---eeecccCCcEEEEhhh
Confidence 9999999988877 99999988888765 2 33 78999998755311111111111 0000112567777664
Q ss_pred CCccHHHHHHH------HHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeecC
Q 019521 295 ATKMPSDVWST------FEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 340 (340)
Q Consensus 295 ~~~M~~~v~~~------L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~w~ 340 (340)
.-.+...+.+. ....+...++-.-.-.+++.++..+.-+..+|+|+
T Consensus 89 ~~~~~~i~~q~~kq~~~t~~~~~a~~~~ni~~v~e~~rE~~~~v~~~e~i~~ 140 (248)
T KOG4723|consen 89 SMLFAPISKQSKKQAPETKNHIKAVFAPNIQCVEENDREFENSVIIIEDIDI 140 (248)
T ss_pred hhhhCccchhhhhcCchhHHHHHhhcCcchhHHHHHHHHHhhheeeeeeeec
Confidence 31111111111 12222222333455567788888889999999995
No 92
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=49.32 E-value=13 Score=29.32 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=32.3
Q ss_pred CCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 019521 293 GSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGR 333 (340)
Q Consensus 293 G~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R 333 (340)
|.. .+...=.+.|.+-+++.|.++.++|..|+.+|.++.+
T Consensus 17 G~~-a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k 56 (108)
T COG3937 17 GLA-AETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAK 56 (108)
T ss_pred cHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 554 6666666677777889999999999999999988765
No 93
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=44.60 E-value=65 Score=25.69 Aligned_cols=95 Identities=19% Similarity=0.209 Sum_probs=54.1
Q ss_pred CeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCC--
Q 019521 186 PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP-- 263 (340)
Q Consensus 186 pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~-- 263 (340)
..+|+|=-|++-.+.+++++.-. . .+...|+-..+..|... |.. . ..+ +++-.. |+..
T Consensus 3 ~~ll~gDeTalPAi~~iLe~lp~---~---~~~~v~iev~~~~d~~~---l~~---~-~~~------~v~wv~-r~~~~~ 62 (119)
T PF04954_consen 3 RYLLVGDETALPAIARILEALPA---D---APGTVFIEVPDEADRQP---LPA---P-AGV------EVTWVP-RDGPAA 62 (119)
T ss_dssp EEEEEEEGGGHHHHHHHHHHS-T---T----EEEEEEEESSGGG--------------TEE------EEEEEE--SS--T
T ss_pred eEEEEeccccHHHHHHHHHhCCC---C---CeEEEEEEECChHhccc---CCC---C-CCC------EEEEEe-CCCCCc
Confidence 57899999999999999998742 2 66788888877776432 222 1 334 444333 4332
Q ss_pred CccchhhhHHHhHHHHHHhh--cCCCEEEEeCCCCccHHHHHHHHHH
Q 019521 264 QKVYVQHKMLEQSQRIWNLL--LSKASIYVAGSATKMPSDVWSTFEE 308 (340)
Q Consensus 264 ~~~yVqd~l~~~~~~l~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~ 308 (340)
...-+.+.+.. +. ..+..++++|-. .+.+.+++.|++
T Consensus 63 ~~~~l~~al~~-------~~~~~~~~~vW~AgE~-~~~r~lR~~l~~ 101 (119)
T PF04954_consen 63 QGSALADALRD-------LPLPAGDGYVWVAGEA-SAVRALRRHLRE 101 (119)
T ss_dssp T-HHHHHHHTT-------S---SS-EEEEEEEEH-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-------hhccCCCeEEEEEecH-HHHHHHHHHHHH
Confidence 11122222222 22 238899999998 787777776664
No 94
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=43.69 E-value=67 Score=22.79 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=21.2
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCEEE
Q 019521 311 SKEGEASRDSAANWLKALQRAGRYHV 336 (340)
Q Consensus 311 ~~~~~~~~~~a~~~~~~l~~~~R~~~ 336 (340)
++..|++...|..||..|.++|+...
T Consensus 22 A~~~gls~~~aR~yL~~Le~eG~V~~ 47 (62)
T PF04703_consen 22 ADALGLSIYQARYYLEKLEKEGKVER 47 (62)
T ss_dssp HHHHTS-HHHHHHHHHHHHHCTSEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 44558899999999999999998764
No 95
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=41.65 E-value=69 Score=22.34 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=32.0
Q ss_pred EEeCCCCccHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHC
Q 019521 290 YVAGSATKMPSDVWSTFEEIVSKEG-----EASRDSAANWLKALQRA 331 (340)
Q Consensus 290 yvCG~~~~M~~~v~~~L~~i~~~~~-----~~~~~~a~~~~~~l~~~ 331 (340)
++.|+. +|...-+.-|..+-.+.+ ++++.+|.+.|.+|+..
T Consensus 9 w~tGDe-PmT~aQ~syL~tL~e~Age~~~~~LtkaeAs~rId~L~~~ 54 (57)
T PF11272_consen 9 WVTGDE-PMTGAQASYLKTLSEEAGEPFPDDLTKAEASERIDELQAQ 54 (57)
T ss_pred ccCCCC-CCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHH
Confidence 577997 998777777777655554 46999999999999863
No 96
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=39.88 E-value=45 Score=32.07 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=21.9
Q ss_pred CCeEEEeCCcc--hhhHHHHHHHHHHh
Q 019521 185 VPLILIGPGTG--CAPFRGFVEERAIQ 209 (340)
Q Consensus 185 ~pii~Ia~GtG--IAPf~s~l~~~~~~ 209 (340)
+.+++.||||| |-|-+++.++....
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~ 28 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED 28 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC
Confidence 46899999999 89999999998864
No 97
>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]
Probab=33.10 E-value=47 Score=30.60 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=37.2
Q ss_pred ccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcC
Q 019521 30 IKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFAS 73 (340)
Q Consensus 30 ~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~ 73 (340)
--|+++|-.||+.++ .+.++...|..|-.++..|+.|..|-+
T Consensus 215 e~Lqd~fh~fLEeRG--I~esl~~FL~~ym~~Kd~rEYl~Wlks 256 (263)
T KOG2536|consen 215 EELQDSFHRFLEERG--IKESLASFLHAYMKNKDSREYLRWLKS 256 (263)
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 468999999999999 488999999999999999999888754
No 98
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=29.69 E-value=65 Score=26.45 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=38.2
Q ss_pred hccccCCCCCCHHHHHHHHHhccCH----------HHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhC
Q 019521 38 LTMDVTSASPRRYFFEVMSYFATAE----------HEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDF 98 (340)
Q Consensus 38 ~~~dl~~~~p~~~~l~~la~~~~~~----------~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~f 98 (340)
.||+-.+.-|++.++..|.+...+. -||.+|.+|+.. ..+|.+.+..=...++|++.-|
T Consensus 47 efL~~~~~DPr~~~~~~L~~~i~~~~g~ivvyN~sfE~~rL~ela~~--~p~~~~~l~~I~~r~vDL~~~f 115 (130)
T PF11074_consen 47 EFLADPGEDPRRELIEALIKAIGSIYGSIVVYNKSFEKTRLKELAEL--FPDYAEKLNSIIERTVDLLDPF 115 (130)
T ss_pred HHhccCCCCchHHHHHHHHHHhhhhcCeEEEechHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHH
Confidence 4555443378999999999887776 899999999872 3344444433233455555543
No 99
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=26.48 E-value=2.5e+02 Score=22.09 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=38.8
Q ss_pred hhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 019521 270 HKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQ 329 (340)
Q Consensus 270 d~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 329 (340)
+.+....+.+.+...+++.|||+-.. ++.++..-++ ..++...+++.++|-+++++.+
T Consensus 57 ~~~~~~~~~i~~~~~~~~~VlVHC~~-G~~RS~~v~~-ayLm~~~~~~~~~A~~~v~~~r 114 (133)
T PF00782_consen 57 EHLDQAVEFIENAISEGGKVLVHCKA-GLSRSGAVAA-AYLMKKNGMSLEEAIEYVRSRR 114 (133)
T ss_dssp GGHHHHHHHHHHHHHTTSEEEEEESS-SSSHHHHHHH-HHHHHHHTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhhhcccceeEEEeCC-CcccchHHHH-HHHHHHcCCCHHHHHHHHHHHC
Confidence 33433334444445568899998876 7776654433 5566677899999999887754
No 100
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=24.84 E-value=42 Score=25.73 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=9.6
Q ss_pred EEEeCCcchhh
Q 019521 188 ILIGPGTGCAP 198 (340)
Q Consensus 188 i~Ia~GtGIAP 198 (340)
|+++||+|+|-
T Consensus 5 ILvvCgsG~~T 15 (94)
T PRK10310 5 IIVACGGAVAT 15 (94)
T ss_pred EEEECCCchhH
Confidence 88999999964
No 101
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=24.61 E-value=1.4e+02 Score=24.29 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=17.9
Q ss_pred hhHHHhHHHHHHhhcCCCEEEEeCCC
Q 019521 270 HKMLEQSQRIWNLLLSKASIYVAGSA 295 (340)
Q Consensus 270 d~l~~~~~~l~~~l~~~~~iyvCG~~ 295 (340)
+.|.+..+.+.+.+.+++.+|+||..
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~G 44 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGNG 44 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEEST
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCc
Confidence 44555566777777789999999997
No 102
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=24.00 E-value=18 Score=18.88 Aligned_cols=9 Identities=56% Similarity=1.076 Sum_probs=6.6
Q ss_pred cchhhHHHH
Q 019521 194 TGCAPFRGF 202 (340)
Q Consensus 194 tGIAPf~s~ 202 (340)
.|++|||+=
T Consensus 6 ~gftpfrgk 14 (19)
T PF06753_consen 6 PGFTPFRGK 14 (19)
T ss_pred CCCCccccc
Confidence 578888764
No 103
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=23.40 E-value=1.3e+02 Score=25.80 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=36.4
Q ss_pred CCEEEEeCCCCccHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCEEE
Q 019521 286 KASIYVAGSATKMPSDVWSTFEEIVSKEG----EASRDSAANWLKALQRAGRYHV 336 (340)
Q Consensus 286 ~~~iyvCG~~~~M~~~v~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~~R~~~ 336 (340)
+-.|.=||+. .-+..|...+++.+++++ -++.++|-.-..=|-++|||+.
T Consensus 113 dlLIvG~Gd~-~~p~~v~~~V~~F~k~~ki~lEi~dte~A~aTfNfLNaEgR~Va 166 (196)
T KOG3363|consen 113 DLLIVGCGDK-KHPDKVRPSVRQFVKSHKIKLEIVDTENAAATFNFLNAEGRYVA 166 (196)
T ss_pred cEEEEecCCc-CCchhcCHHHHHHHHHhCcceEEecchhhhhHhhhccccccEEE
Confidence 5667779986 555666666666666654 2577778777888899999985
No 104
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.28 E-value=3e+02 Score=24.98 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=20.3
Q ss_pred CCCEEEEeCCCCccHHHHHHHHHHHHHHh
Q 019521 285 SKASIYVAGSATKMPSDVWSTFEEIVSKE 313 (340)
Q Consensus 285 ~~~~iyvCG~~~~M~~~v~~~L~~i~~~~ 313 (340)
.+..|-++|....+++++++.+.++-...
T Consensus 89 ~~irvr~iG~~~~Lp~~~~~~i~~~e~~T 117 (233)
T PRK14841 89 ERVRVRILGRKEGLPEKVLKKWQEVEEKT 117 (233)
T ss_pred cCcEEEEEeChhhCCHHHHHHHHHHHHHh
Confidence 37777888877777777777777665433
No 105
>PF02330 MAM33: Mitochondrial glycoprotein; InterPro: IPR003428 This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q.; GO: 0005759 mitochondrial matrix; PDB: 3QV0_A 1YQF_F 3JV1_A 1P32_A 3RPX_A.
Probab=22.04 E-value=72 Score=28.09 Aligned_cols=43 Identities=7% Similarity=0.163 Sum_probs=36.9
Q ss_pred cccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcC
Q 019521 29 PIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFAS 73 (340)
Q Consensus 29 ~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~ 73 (340)
.-.|.+.|..||+-++ + ...|...|..|+++..+++.+..|.+
T Consensus 157 De~Lq~~~~~yLeeRG-I-d~~la~fl~~y~~~kEq~eYi~wL~~ 199 (204)
T PF02330_consen 157 DENLQDAFMNYLEERG-I-DEELANFLHDYSTDKEQREYIRWLKN 199 (204)
T ss_dssp BHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999 4 88899999999999999888877743
No 106
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=20.97 E-value=2.3e+02 Score=24.99 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=39.2
Q ss_pred hcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCE
Q 019521 283 LLSKASIYVAGSATKMPSDVWSTFEEIVSKEGE---ASRDSAANWLKALQRAGRY 334 (340)
Q Consensus 283 l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~---~~~~~a~~~~~~l~~~~R~ 334 (340)
+.++..|.+||.++.++-+|.+.-+.+-...+. +-.....+-++.|+.+|+.
T Consensus 130 v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~rrL~~qgk~ 184 (195)
T KOG3219|consen 130 VSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREAYRRLKLQGKL 184 (195)
T ss_pred cCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHhcCCC
Confidence 345889999999988888887776666554433 4677788888888888764
No 107
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=20.78 E-value=2.6e+02 Score=19.53 Aligned_cols=30 Identities=10% Similarity=0.162 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 019521 301 DVWSTFEEIVSKEGEASRDSAANWLKALQR 330 (340)
Q Consensus 301 ~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~ 330 (340)
+.++.+.+-.++.|-+|.+.|..+...|..
T Consensus 18 e~kK~~idk~Ve~G~iTqeqAd~ik~~id~ 47 (59)
T PF10925_consen 18 ELKKQIIDKYVEAGVITQEQADAIKKHIDQ 47 (59)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 455666666778888999999999888765
No 108
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=20.60 E-value=53 Score=25.34 Aligned_cols=12 Identities=33% Similarity=0.456 Sum_probs=10.1
Q ss_pred EEEeCCcchhhH
Q 019521 188 ILIGPGTGCAPF 199 (340)
Q Consensus 188 i~Ia~GtGIAPf 199 (340)
|++|||+|++-=
T Consensus 4 IL~aCG~GvgSS 15 (93)
T COG3414 4 ILAACGNGVGSS 15 (93)
T ss_pred EEEECCCCccHH
Confidence 789999999863
No 109
>PF15335 CAAP1: Caspase activity and apoptosis inhibitor 1
Probab=20.29 E-value=35 Score=24.49 Aligned_cols=45 Identities=24% Similarity=0.481 Sum_probs=29.1
Q ss_pred hhhhhHHHHHHHHhhhCCCCCCCCCcCcccHHHHHHhccc-cCCCCCCHHHH
Q 019521 2 LKHAVSQVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMD-VTSASPRRYFF 52 (340)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~d-l~~~~p~~~~l 52 (340)
+++..+=.--+++++..|+..| .+++.++-..|+| |.+ .+.+.++
T Consensus 16 l~Q~F~~l~~kkl~~MlPd~LK-----~~~l~elk~lCl~eL~~-~S~krl~ 61 (64)
T PF15335_consen 16 LRQCFSVLKEKKLQKMLPDILK-----GCSLEELKELCLEELEG-MSEKRLL 61 (64)
T ss_pred HHHHHHHcCHHHHHHHCHHHHh-----cCCHHHHHHHHHHHHHc-ccHHHHH
Confidence 3333333455788888887666 5778888888775 455 5555544
Done!