Query 019522
Match_columns 340
No_of_seqs 469 out of 1493
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 03:07:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 3.4E-28 1.2E-32 218.5 25.7 260 57-330 46-342 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.9 1.5E-25 5.1E-30 202.0 21.0 264 36-312 23-321 (451)
3 4gc0_A D-xylose-proton symport 99.9 1.7E-22 5.9E-27 184.1 22.9 269 38-312 9-343 (491)
4 2gfp_A EMRD, multidrug resista 99.9 5.2E-24 1.8E-28 187.5 12.3 242 53-310 16-264 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 4.3E-21 1.5E-25 174.9 24.1 137 67-212 49-190 (491)
6 2cfq_A Lactose permease; trans 99.8 8.4E-20 2.9E-24 162.9 8.9 261 51-325 21-301 (417)
7 2xut_A Proton/peptide symporte 99.7 7.7E-17 2.6E-21 148.0 14.9 168 40-215 15-195 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.9E-11 6.5E-16 109.7 17.0 149 57-215 272-430 (451)
9 3o7q_A L-fucose-proton symport 99.3 1.7E-10 5.8E-15 103.1 20.4 144 57-213 278-427 (438)
10 2cfq_A Lactose permease; trans 99.1 6.1E-10 2.1E-14 99.0 13.6 144 71-221 258-402 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 4.4E-09 1.5E-13 95.4 16.4 146 58-215 304-468 (491)
12 4gc0_A D-xylose-proton symport 98.9 1.3E-08 4.3E-13 92.3 12.3 165 58-228 298-472 (491)
13 2gfp_A EMRD, multidrug resista 98.7 6.2E-09 2.1E-13 91.0 2.7 123 58-191 220-351 (375)
14 2xut_A Proton/peptide symporte 98.4 3E-06 1E-10 77.4 12.9 107 74-185 337-464 (524)
15 2g9p_A Antimicrobial peptide l 56.2 2.6 9E-05 19.2 0.2 13 92-104 3-15 (26)
16 3v5u_A Uncharacterized membran 20.1 3.7E+02 0.013 22.2 8.7 22 57-78 183-204 (320)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.96 E-value=3.4e-28 Score=218.54 Aligned_cols=260 Identities=13% Similarity=0.158 Sum_probs=183.9
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hh---hccchHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKILMIGRI 132 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~---~~~~~~~~l~~~r~ 132 (340)
.+..|.+.+++|.++.+.|++.+...++..+++++.|+++||+|||+++..+.++.+++. +. +++++++.+++.|+
T Consensus 46 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (438)
T 3o7q_A 46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF 125 (438)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 677999999999999999999999999999999999999999999999999999999988 77 78899999999999
Q ss_pred HHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh-cccCCC------------
Q 019522 133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV-DSFSLG------------ 196 (340)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~-~~~~~~------------ 196 (340)
+.|++.+...+...+ ++.|. ++|++..+......+ +|..+++.++..+. +..+ .
T Consensus 126 l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~--------~g~~~g~~~~~~l~~~~~~-~~~~~~~~~~~~~ 195 (438)
T 3o7q_A 126 IIAAGLGCLETAANP-FVTVLGPESSGHFRLNLAQTFNS--------FGAIIAVVFGQSLILSNVP-HQSQDVLDKMSPE 195 (438)
T ss_dssp HHHHHHHHHHHHHHH-HHHHSSCSTTHHHHHHHHHHHHH--------HHHHHHHHHTTHHHHTSSC-CCCHHHHHHSCHH
T ss_pred HHHhhHHHhhhhHHH-HHHHHcCchhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcccc-cccccccccCCcc
Confidence 999999999888867 88776 555554444444433 44455555555444 2222 2
Q ss_pred ------------cchhhhhHHHHHHHHHHHHh-cccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhH
Q 019522 197 ------------PVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSM 263 (340)
Q Consensus 197 ------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (340)
|++.|...+....+...... .+.||++++++++++ .++.++..++++|+|+++.......+.....
T Consensus 196 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (438)
T 3o7q_A 196 QLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK-QGSFSASLSRLARIRHWRWAVLAQFCYVGAQ 274 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS-TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc-ccchhhhHHHHHhChHHHHHHHHHHHHHHHH
Confidence 66777655544444333332 334544333211111 1222345567889999888766655544444
Q ss_pred HHHHHhhcccc-ccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHH
Q 019522 264 YTFVFLWTPAL-SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLP 330 (340)
Q Consensus 264 ~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 330 (340)
.. ...+.|.| .++..|.+. +.......++.++++++.+++.||+++|+ .+........+...+.
T Consensus 275 ~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--~~~~~~~~~~~~~~~~ 342 (438)
T 3o7q_A 275 TA-CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--VLAAYALIAMALCLIS 342 (438)
T ss_dssp HH-HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHH
Confidence 44 57888998 877767655 45666778889999999999999999884 4544444444444433
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=1.5e-25 Score=202.04 Aligned_cols=264 Identities=12% Similarity=0.116 Sum_probs=181.7
Q ss_pred cchhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHH
Q 019522 36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT 111 (340)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~ 111 (340)
++.+++.+.......+..+++ .+.+|.+.+++ .++.+.|++.+...++..+++++.|+++||+|||+++..+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 344455555555555555554 57789999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHh-hhhc----cchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHH
Q 019522 112 YILSC-ITKH----SPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG 183 (340)
Q Consensus 112 ~~~~~-~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~ 183 (340)
.+++. ++++ +++++.+++.|+++|++.+...+...+ ++.|. ++|++..+..... ..+|..+|+.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~----~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIVSVWNCA----HNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHH-HHHTTCTTTHHHHHHHHHHHH----HHHHHTSHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHH-HHHHHCCchhhhHHHHHHHHH----HHHHHHHHHHHHH
Confidence 99988 7788 899999999999999999999888877 87776 5566644443333 3344444444444
Q ss_pred hhhhhhhcccC-CCcchhhhhHHHHHHHHHHHHhcccccccCCC-----cc-chH---H---HH--H--HHH-HHHHHhh
Q 019522 184 LFGNLLVDSFS-LGPVAPFDAAACFLAIGMVIILSSWTENYGDP-----SE-SKD---L---LT--Q--FRG-AAVAIAS 245 (340)
Q Consensus 184 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~---~---~~--~--~~~-~~~~~~~ 245 (340)
. +.+..+ |+ ..|++.+++.++..++.....+|++.+. ++ +++ . .+ + .++ ..++.+|
T Consensus 177 ~----l~~~~g~w~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (451)
T 1pw4_A 177 L----GMAWFNDWH--AALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP 250 (451)
T ss_dssp H----HHHHTCCST--TCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSS
T ss_pred H----HHHHhccHH--HHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHc
Confidence 3 333344 55 5566666555444333322333322110 00 000 0 00 0 000 1345677
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhC--CCCc
Q 019522 246 DEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARS--PPRV 312 (340)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~ 312 (340)
+|+++...+...+.....+. ...+.|.|.++..+.+. +.......++.+++.++.+++.||+ ++|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 321 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 321 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 88888776665555554444 57889999988777766 3566777888999999999999999 7774
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.91 E-value=1.7e-22 Score=184.07 Aligned_cols=269 Identities=13% Similarity=0.064 Sum_probs=163.2
Q ss_pred hhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCC--------hhhhHHHHHHHHhhhhhhhhhhhhccccccchHHH
Q 019522 38 FKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFG--------KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC 105 (340)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s--------~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l 105 (340)
+.+.+..+..+..+.+++| ++.+|.+.++++.+ ..+.|++.+...++..++++++|+++||+|||+++
T Consensus 9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l 88 (491)
T 4gc0_A 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3344444445556677777 34477777776432 34567888888888888999999999999999999
Q ss_pred HHHHHHHHHHh-hhh------------------ccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHH
Q 019522 106 VTYCLTYILSC-ITK------------------HSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWL 163 (340)
Q Consensus 106 ~~~~~~~~~~~-~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~ 163 (340)
..+.+++.++. +++ +++|++.++++|+++|++.|...+.... +++|. ++|++..+..
T Consensus 89 ~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~-~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 89 KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPM-YIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCHHhhhhhHHhh
Confidence 99999999877 665 4789999999999999999999888856 88887 5666644444
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhhhhh--cccCCCcchhhhhHHHHHHHHHHHHhccccccc------CCCccchHHHHH
Q 019522 164 SITFSKAIFLGNGLVAILSGLFGNLLV--DSFSLGPVAPFDAAACFLAIGMVIILSSWTENY------GDPSESKDLLTQ 235 (340)
Q Consensus 164 ~~~~~~~~~~g~~ig~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 235 (340)
..... .|..++..++........ ....+.|+..+.......++..... ...||++ ++++++++..++
T Consensus 168 ~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~~ 242 (491)
T 4gc0_A 168 QFAII----FGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILRK 242 (491)
T ss_dssp HHHHH----HHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHHH
T ss_pred hhhhh----hhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhHHHHhHHH
Confidence 44443 333333333332222111 0112446666666666555555444 4556542 222222111111
Q ss_pred HHH----------------------HHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh--hHHHHHHH
Q 019522 236 FRG----------------------AAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH--GFIFATFM 291 (340)
Q Consensus 236 ~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 291 (340)
... ......+.++.........+.+...+.....+.|.+.++....+. ........
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (491)
T 4gc0_A 243 IMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVG 322 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHH
Confidence 100 001122234444433444444444444445566655544322222 23445567
Q ss_pred HHHHHHHHHHHHHHhhCCCCc
Q 019522 292 LASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 292 ~~~~~~~~~~g~l~dr~g~~~ 312 (340)
+..+++.++.+++.||+|||+
T Consensus 323 ~~~~~~~~~~~~l~dr~Grr~ 343 (491)
T 4gc0_A 323 VINLTFTVLAIMTVDKFGRKP 343 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCSHH
T ss_pred HHHHHHHHHHHHHHHhhcCcc
Confidence 778899999999999999995
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.91 E-value=5.2e-24 Score=187.49 Aligned_cols=242 Identities=12% Similarity=0.075 Sum_probs=175.2
Q ss_pred HhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHH
Q 019522 53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGR 131 (340)
Q Consensus 53 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r 131 (340)
.....|..|.+.+++|.|+.+.+++.+...+...+.+++.|+++||+|||+++..+..+.+++. +.+++++++.+++.|
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAAS 95 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3444688999999999999999999999999999999999999999999999999999999988 778899999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHH
Q 019522 132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL 208 (340)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 208 (340)
++.|++.+...+...+ ++.|. ++|++..+......+ +|..+++.++..+.+..+ |+..+.+.++..
T Consensus 96 ~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~ 164 (375)
T 2gfp_A 96 AMQGMGTGVGGVMART-LPRDLYERTQLRHANSLLNMGIL--------VSPLLAPLIGGLLDTMWN--WRACYLFLLVLC 164 (375)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHTSSCCSHHHHHHHHHH--------HHHHHHHHHHHHSSCHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHH-HHHHHCCHHHHHHHHHHHHHHHH--------HHHHhhHHHHHHHHHhcc--HHHHHHHHHHHH
Confidence 9999999998888766 77765 667775554444333 444555555555544434 557777766666
Q ss_pred HHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hH
Q 019522 209 AIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GF 285 (340)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 285 (340)
++..+......||++++++++++ .+++.++.+|+|+++.......+....... ...+.|.|.++..|.++ +.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~ 239 (375)
T 2gfp_A 165 AGVTFSMARWMPETRPVDAPRTR----LLTSYKTLFGNSGFNCYLLMLIGGLAGIAA-FEACSGVLMGAVLGLSSMTVSI 239 (375)
T ss_dssp HHHHCCCCCSSCCCSTTTCCCCC----TTTCSTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccCCCCccccc----HHHHHHHHhcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHH
Confidence 55554343455555433322211 112334567788887766655555444444 57889999887666655 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC
Q 019522 286 IFATFMLASMLGSSLASRLMARSPP 310 (340)
Q Consensus 286 ~~~~~~~~~~~~~~~~g~l~dr~g~ 310 (340)
......++.+++.++.+++.||.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 240 LFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677888888888888888765
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.88 E-value=4.3e-21 Score=174.86 Aligned_cols=137 Identities=21% Similarity=0.122 Sum_probs=102.5
Q ss_pred hCCChhhhHHHHHHHHhhhhhhhhhhhhcccc-ccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhh
Q 019522 67 YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSA 144 (340)
Q Consensus 67 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (340)
+|.++.+.+++.+...++..+++++.|+++|| +|||+++..+.++.+++. ++++++|++.+++.|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 899999999999999988 7889999999999999999999999888
Q ss_pred hhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHH
Q 019522 145 FESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 145 ~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
..+ ++.|. ++|++ +...+..+.... +|..+++.+++.+.+..+ |+..|++.++..++..
T Consensus 129 ~~~-~~~~~~~~~~~~r--~~~~~~~~~~~~----~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 129 VST-LVGTLYDEHDRRR--DAGFSIFVFGIN----LGAFIAPLIVGAAQEAAG--YHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHH-HHHHHSSSCTTHH--HHHHHHHHHHHH----HHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHcCcccccc--eeeehHHHHHHH----HHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHH
Confidence 766 77775 33222 112222333333 444555555555555455 4466766654444433
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.80 E-value=8.4e-20 Score=162.92 Aligned_cols=261 Identities=15% Similarity=0.091 Sum_probs=138.4
Q ss_pred HHHhhhhHHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh----hhhccchHH
Q 019522 51 AGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHSPQYK 125 (340)
Q Consensus 51 ~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~----~~~~~~~~~ 125 (340)
...+...|++|.+. +++|.|+.+.|.+.+...++..+++++.|+++||+|||+++..+..+.++.. ...+.+...
T Consensus 21 ~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2cfq_A 21 FIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ 100 (417)
T ss_dssp HHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344467777755 4689999999999999999999999999999999999999998887765422 112222211
Q ss_pred -HHHHHHHHHHHHhhhhhhhhhh---hhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchh
Q 019522 126 -ILMIGRILGGIATSLLFSAFES---WLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAP 200 (340)
Q Consensus 126 -~l~~~r~l~G~~~~~~~~~~~~---~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~ 200 (340)
.+...+.+.|++.+...+...+ .+..|. ++++...+.... +..+|..+++.++.++.+ .+ |+..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------~~~~g~~~~~~l~~~l~~-~~--~~~~ 169 (417)
T 2cfq_A 101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM--------FGCVGWALGASIVGIMFT-IN--NQFV 169 (417)
T ss_dssp TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSS--------STTTHHHHHHHHHHHHHH-HC--SHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHH--------HHHHHHHHHHHHHHHHHH-hc--hhHH
Confidence 1233444444444333322222 133222 223332222221 222444455555555443 23 4466
Q ss_pred hhhHHHHHHHHHHHHhcccccccCCC--ccc--hHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhcccccc
Q 019522 201 FDAAACFLAIGMVIILSSWTENYGDP--SES--KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP 276 (340)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (340)
|++.++..++.........||++++. +++ ++..+...++.++.+|+|+++.......... ..+.....+.|.|.+
T Consensus 170 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 248 (417)
T 2cfq_A 170 FWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVS-CTYDVFDQQFANFFT 248 (417)
T ss_dssp HTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 76655444333333322222221100 000 0000001123345678888776554433322 233333455666654
Q ss_pred CCCCch---h---hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHH
Q 019522 277 NDEEIP---H---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSV 325 (340)
Q Consensus 277 ~~~~~~---~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 325 (340)
+..+.. . +.......++.+++.++.+++.||+|+|+ .+..+....++
T Consensus 249 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~--~l~~~~~~~~~ 301 (417)
T 2cfq_A 249 SFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN--ALLLAGTIMSV 301 (417)
T ss_dssp HTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHH
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH--HHHHHHHHHHH
Confidence 433321 1 34455566778889999999999999884 44444433333
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.72 E-value=7.7e-17 Score=147.96 Aligned_cols=168 Identities=12% Similarity=0.157 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHHhhhhHHHH-HHHHhhC------CChhhhHHHHHHHHhhhhhhhhhhhhccccc-cchHHHHHHHHH
Q 019522 40 NNYLLVYSLMMAGDWLQGPYVY-YLYSTYG------FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLT 111 (340)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g------~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~ 111 (340)
+......++.........+.++ .+.+++| .++.+.|++.+...++..++.++.|+++||+ |||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~ 94 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLI 94 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3333334444333333345544 4567789 9999999999999999999999999999999 999999999999
Q ss_pred HHHHh-hhhccc-hHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 019522 112 YILSC-ITKHSP-QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (340)
Q Consensus 112 ~~~~~-~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 186 (340)
.+++. +.++++ +++.+++.|++.|++.+...+...+ ++.|. ++|++..+.... .. .+..+|..+++.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~-~~----~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 95 YCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSS-FMGDQFDQSNKSLAQKAFDM-FY----FTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHH-HHHHTCSTTTTTHHHHHHHH-HH----HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHH-HHHHHcCccchHHHHHHHHH-HH----HHHHHHHHHHHHHH
Confidence 99988 778888 9999999999999999999888766 77775 445443332111 22 23335666666666
Q ss_pred hhhhcccCCCcchhhhhHHHHHHHHHHHH
Q 019522 187 NLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (340)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (340)
..+.+..+ |+..|.+.++..++..+..
T Consensus 169 ~~l~~~~g--~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 169 PLLLKNFG--AAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp THHHHTSC--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccc--HHHHHHHHHHHHHHHHHHH
Confidence 66665545 5566777666555544443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.37 E-value=1.9e-11 Score=109.65 Aligned_cols=149 Identities=12% Similarity=0.041 Sum_probs=101.2
Q ss_pred hHHHHHHHHh-hCCChhhhHHHHHHHHhhhhhhhhhhhhccccc--cchHHHHHHHHHHH-HHh-hhhcc--chHHHHHH
Q 019522 57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACVTYCLTYI-LSC-ITKHS--PQYKILMI 129 (340)
Q Consensus 57 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~--Grr~~l~~~~~~~~-~~~-~~~~~--~~~~~l~~ 129 (340)
..+.|.+.++ +|.++.+.+.+.+...++..++.++.|++.||+ |||+.+..+..+.. ++. +..+. ++.+.+.+
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 4567777776 899999999999999888889999999999999 99999888877766 555 44554 36777778
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHH
Q 019522 130 GRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAAC 206 (340)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 206 (340)
..++.|++.+...+.... ++.|. ++|+...+....... + +|..+++.+.+.+.+..++ ...|++.++
T Consensus 352 ~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~----~---~g~~~~~~~~g~l~~~~g~--~~~~~~~~~ 421 (451)
T 1pw4_A 352 CMIVIGFLIYGPVMLIGL-HALELAPKKAAGTAAGFTGLFGY----L---GGSVAASAIVGYTVDFFGW--DGGFMVMIG 421 (451)
T ss_dssp HHHHHHHHHTHHHHHHHH-HHHHTSCTTHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHSSCS--HHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHH-HHHHHhchhhhhhHHHHHHHHHH----H---HHHHHHHHHHHHHHHhcCc--HHHHHHHHH
Confidence 888899988887776545 66665 345553333333222 2 1445555555555554554 456666555
Q ss_pred HHHHHHHHH
Q 019522 207 FLAIGMVII 215 (340)
Q Consensus 207 ~~~~~~~~~ 215 (340)
+.++..+..
T Consensus 422 ~~~~~~~~~ 430 (451)
T 1pw4_A 422 GSILAVILL 430 (451)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.32 E-value=1.7e-10 Score=103.07 Aligned_cols=144 Identities=12% Similarity=0.062 Sum_probs=97.6
Q ss_pred hHHHHHH-HHh-hCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHH
Q 019522 57 GPYVYYL-YST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL 133 (340)
Q Consensus 57 ~~~~~~~-~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l 133 (340)
..+.|.+ .++ +|.++.+.+...+...++..++.++.|+++||+|||+.+..+.++..++. +..+.++...+.. -++
T Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 356 (438)
T 3o7q_A 278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTL 356 (438)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHH
T ss_pred HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHH
Confidence 3556666 555 59999999999999888888999999999999999999999998888877 6677777665444 488
Q ss_pred HHHHhhhhhhhhhhhhhccc-c-ccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccC-CCcchhhhhHHHHHHH
Q 019522 134 GGIATSLLFSAFESWLVAEH-N-KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS-LGPVAPFDAAACFLAI 210 (340)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~-~-~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 210 (340)
.|++.+...+...+ +..|. . +++.. ..... .+ .+|..+++.+.+.+.+..+ ++ ..|.+.++..++
T Consensus 357 ~g~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~----~~-~~g~~~~~~~~g~l~~~~g~~~--~~~~~~~~~~~~ 424 (438)
T 3o7q_A 357 CSAFMSIQYPTIFS-LGIKNLGQDTKYG----SSFIV----MT-IIGGGIVTPVMGFVSDAAGNIP--TAELIPALCFAV 424 (438)
T ss_dssp HHHHHTTHHHHHHH-HHHSSCGGGHHHH----HHHHH----HT-THHHHHHHHHHHHHHHHHTSSG--GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHhhccccccch----hhHHH----HH-HHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHH
Confidence 88888888887766 54554 2 22221 11111 11 2555666666666665555 44 455555444444
Q ss_pred HHH
Q 019522 211 GMV 213 (340)
Q Consensus 211 ~~~ 213 (340)
..+
T Consensus 425 ~~~ 427 (438)
T 3o7q_A 425 IFI 427 (438)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.13 E-value=6.1e-10 Score=99.02 Aligned_cols=144 Identities=9% Similarity=0.018 Sum_probs=88.8
Q ss_pred hhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 019522 71 KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWL 149 (340)
Q Consensus 71 ~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 149 (340)
..+.+...+...+...++.++.|+++||+|||+++..+..+.+++. ..++.++.+.+++..++.+++.+...+.... +
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ 336 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK-Y 336 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH-H
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3445666666666667777889999999999999998888887776 6667777777777777888876665555544 6
Q ss_pred hccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhccccc
Q 019522 150 VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE 221 (340)
Q Consensus 150 i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (340)
+.|..+...+ ...++.....+..+|..++|.+.+.+.+..+ +...|...+++.++..+......+|
T Consensus 337 ~~~~~p~~~~----g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 337 ITSQFEVRFS----ATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHSCHHHH----HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH--HHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHCCHHHH----HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 6665222111 1111211223333555556665555554433 3455666666666555554333343
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.06 E-value=4.4e-09 Score=95.37 Aligned_cols=146 Identities=11% Similarity=-0.090 Sum_probs=89.4
Q ss_pred HHHHHHHHh-hCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHH-----HHHHHHHHHh-hhhcc---------
Q 019522 58 PYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV-----TYCLTYILSC-ITKHS--------- 121 (340)
Q Consensus 58 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~-----~~~~~~~~~~-~~~~~--------- 121 (340)
...|.+.++ ++.+..+.+.......+...+..++.|++.||+|||+... .+..+.+++. +....
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
T 4aps_A 304 VVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGK 383 (491)
T ss_dssp THHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTT
T ss_pred HHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 335555544 6666667777777777777788888999999999987655 6666666665 44442
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcc
Q 019522 122 PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPV 198 (340)
Q Consensus 122 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~ 198 (340)
.+.+.+.+..++.|++.+...+.... ++.|. +.|+...+....... +|..+++.+.+.+.+. + ..
T Consensus 384 ~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~~~~~~--------~g~~i~~~~~~~~~~~-~--~~ 451 (491)
T 4aps_A 384 VSPLWLVGSWALVILGEMLISPVGLS-VTTKLAPKAFNSQMMSMWFLSSS--------VGSALNAQLVTLYNAK-S--EV 451 (491)
T ss_dssp CCTHHHHHHHHHHHHHHHTTTTHHHH-HHHHHTTTTCSSSSTHHHHHHHH--------HHHHHHHHHGGGGGGS-S--TT
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcc-c--HH
Confidence 26677778889999998887777756 66654 557775554433333 4444455454444332 2 22
Q ss_pred hhhhhHHHHHHHHHHHH
Q 019522 199 APFDAAACFLAIGMVII 215 (340)
Q Consensus 199 ~~~~~~~~~~~~~~~~~ 215 (340)
..+...+.+.++..+..
T Consensus 452 ~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 452 AYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555554444444443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.89 E-value=1.3e-08 Score=92.34 Aligned_cols=165 Identities=16% Similarity=0.038 Sum_probs=93.2
Q ss_pred HHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhc-----cchHHHHH-HH
Q 019522 58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH-----SPQYKILM-IG 130 (340)
Q Consensus 58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~-----~~~~~~l~-~~ 130 (340)
.+.|.+.++.+.+..+.........+...+..++.+.+.||+|||+.+..+.....++. ..+. .++...+. ..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 377 (491)
T 4gc0_A 298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML 377 (491)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 44677888888887777666666666677778889999999999999998888777655 3221 12222222 12
Q ss_pred HHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHH
Q 019522 131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF 207 (340)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 207 (340)
-+..+.+.+. .+.. ..+.+|. +.|+...++...... ++..+++.+.|.+........++++...|++.+++
T Consensus 378 ~~~~~~~~~~-~~~~-~~~~~E~fPt~~R~~~~g~~~~~~~----~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~ 451 (491)
T 4gc0_A 378 FYVAAFAMSW-GPVC-WVLLSEIFPNAIRGKALAIAVAAQW----LANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 451 (491)
T ss_dssp HHHHHHHTTT-THHH-HHHHHHSSCTTTHHHHHHHHHHHHH----HHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhHH-HHHH-HHHHHHhCCHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 2222222222 2333 2266775 556664444433333 23323333333332211111112233567777777
Q ss_pred HHHHHHHHhcccccccCCCcc
Q 019522 208 LAIGMVIILSSWTENYGDPSE 228 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ 228 (340)
.++..++.....||++++.-|
T Consensus 452 ~~~~~i~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 452 GVLAALFMWKFVPETKGKTLE 472 (491)
T ss_dssp HHHHHHHHHHHCCCCTTCCHH
T ss_pred HHHHHHHHHheecCCCCCCHH
Confidence 777777666788999887644
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.67 E-value=6.2e-09 Score=90.99 Aligned_cols=123 Identities=11% Similarity=0.036 Sum_probs=78.1
Q ss_pred HHHHHHHH-hhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHH-HHHHh-hh--hc--cchHHHHHHH
Q 019522 58 PYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT-YILSC-IT--KH--SPQYKILMIG 130 (340)
Q Consensus 58 ~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~-~~~~~-~~--~~--~~~~~~l~~~ 130 (340)
.+.|.+.+ ++|.++.+.+.+.+...++..++.++.|++.||+|+| +..+... ...+. .. .. .++.+.+.+.
T Consensus 220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
T 2gfp_A 220 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVP 297 (375)
T ss_dssp HHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHH
Confidence 34444444 4888999999998888888888888999999999883 2333333 22232 21 22 2366677778
Q ss_pred HHHHHHHhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 019522 131 RILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD 191 (340)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~ 191 (340)
.++.|++.+...+...+ ++.|. ++|++..+...... .+|..+++.+.+.+.+
T Consensus 298 ~~l~g~~~~~~~~~~~~-~~~~~~p~~~g~~~g~~~~~~--------~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 298 AALFFFGAGMLFPLATS-GAMEPFPFLAGTAGALVGGLQ--------NIGSGVLASLSAMLPQ 351 (375)
T ss_dssp HHHHHHHHHHTSSTTHH-HHHTHHHHHHHHHHHHHHHHH--------HHHHHCCSTTCTHHHH
T ss_pred HHHHHHHHHHhhHHHHH-HHHHhCCcccchHHHHHHHHH--------HHHHHHHHHHHHHHhc
Confidence 88999999988887766 66665 44555333333222 2455555555555444
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.40 E-value=3e-06 Score=77.38 Aligned_cols=107 Identities=11% Similarity=-0.016 Sum_probs=61.5
Q ss_pred hHHHHHHHHhhhhhhhhhhhhcc----ccccc----hHHHHHHHHHHHHHh-hhhcc---------chHHHHHHHHHHHH
Q 019522 74 IGQLFIAGFGSSMLFGTIVGSLA----DKQGR----KRACVTYCLTYILSC-ITKHS---------PQYKILMIGRILGG 135 (340)
Q Consensus 74 ~g~~~~~~~~~~~~~~~~~G~l~----Dr~Gr----r~~l~~~~~~~~~~~-~~~~~---------~~~~~l~~~r~l~G 135 (340)
.+.+.....+...+.+++.+++. ||.|+ ++.+..+.++.+++. +.++. .+.+.+.+..++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 44554444444555666666654 55543 356667777777766 44442 36677778889999
Q ss_pred HHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhh
Q 019522 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF 185 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~ 185 (340)
++.+...+.... ++.|. ++|+...+....... +|..+|+.+.+.+
T Consensus 417 ~~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~~~~~~----~g~~~g~~~~g~~ 464 (524)
T 2xut_A 417 FGEVLVSATGLE-FAYSQAPKAMKGTIMSFWTLSVT----VGNLWVLLANVSV 464 (524)
T ss_dssp HHHHHHHHHHTT-THHHHCCTTCCTTTHHHHGGGHH----HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HHHHhCcHHHHhHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 999888877655 65554 667775555544443 3444444444433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=56.21 E-value=2.6 Score=19.23 Aligned_cols=13 Identities=46% Similarity=0.621 Sum_probs=10.5
Q ss_pred hhhccccccchHH
Q 019522 92 VGSLADKQGRKRA 104 (340)
Q Consensus 92 ~G~l~Dr~Grr~~ 104 (340)
.|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 6788899999864
No 16
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=20.06 E-value=3.7e+02 Score=22.18 Aligned_cols=22 Identities=9% Similarity=-0.077 Sum_probs=16.7
Q ss_pred hHHHHHHHHhhCCChhhhHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLF 78 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~ 78 (340)
.+-...+.+++|+++..+|...
T Consensus 183 v~~~~~ia~~~gis~~~iGltl 204 (320)
T 3v5u_A 183 VDGAKKIALALDISDKVIGFTL 204 (320)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHT
T ss_pred cccHHHHHHHhCCchHHHHHHH
Confidence 3446677889999999998753
Done!