Query 019523
Match_columns 339
No_of_seqs 310 out of 2487
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:26:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02374 pyruvate dehydrogenas 100.0 3.7E-84 8.1E-89 632.3 35.8 339 1-339 95-433 (433)
2 COG1071 AcoA Pyruvate/2-oxoglu 100.0 1E-82 2.2E-87 601.0 33.4 311 1-317 36-348 (358)
3 PLN02269 Pyruvate dehydrogenas 100.0 2.2E-77 4.7E-82 574.3 32.9 320 1-330 39-362 (362)
4 CHL00149 odpA pyruvate dehydro 100.0 3.1E-77 6.6E-82 571.3 32.4 313 1-313 29-341 (341)
5 KOG0225 Pyruvate dehydrogenase 100.0 2E-77 4.4E-82 546.7 29.0 325 1-337 68-394 (394)
6 TIGR03182 PDH_E1_alph_y pyruva 100.0 1.1E-75 2.5E-80 556.2 31.0 305 1-312 11-315 (315)
7 TIGR03181 PDH_E1_alph_x pyruva 100.0 1.1E-69 2.4E-74 520.1 30.7 299 1-316 33-332 (341)
8 PF00676 E1_dh: Dehydrogenase 100.0 2.7E-69 5.8E-74 509.1 27.4 296 1-304 3-300 (300)
9 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 1.6E-68 3.5E-73 503.4 31.0 288 1-295 5-293 (293)
10 KOG1182 Branched chain alpha-k 100.0 1.1E-58 2.4E-63 420.1 20.9 309 1-316 95-405 (432)
11 PRK09404 sucA 2-oxoglutarate d 100.0 5.8E-54 1.3E-58 448.9 29.8 299 1-312 198-527 (924)
12 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 1.1E-46 2.4E-51 392.6 28.6 296 2-303 199-522 (929)
13 cd02016 TPP_E1_OGDC_like Thiam 100.0 7.3E-47 1.6E-51 346.6 18.6 237 7-249 1-264 (265)
14 PRK12270 kgd alpha-ketoglutara 100.0 2.1E-31 4.5E-36 272.4 26.3 290 4-298 505-821 (1228)
15 PRK12315 1-deoxy-D-xylulose-5- 100.0 3.9E-32 8.4E-37 277.1 17.8 208 10-238 28-250 (581)
16 KOG0450 2-oxoglutarate dehydro 99.9 3.1E-26 6.8E-31 226.1 19.3 304 2-312 259-589 (1017)
17 KOG0451 Predicted 2-oxoglutara 99.9 8.1E-26 1.8E-30 218.8 16.4 297 1-302 166-497 (913)
18 COG0567 SucA 2-oxoglutarate de 99.9 1.3E-23 2.9E-28 215.5 21.1 301 4-314 187-512 (906)
19 cd02006 TPP_Gcl Thiamine pyrop 99.9 2.7E-24 5.9E-29 192.2 9.3 159 61-234 7-197 (202)
20 TIGR00232 tktlase_bact transke 99.9 9E-22 2E-26 203.5 28.4 143 93-240 103-251 (653)
21 cd02012 TPP_TK Thiamine pyroph 99.9 4.2E-23 9.1E-28 191.0 16.2 137 94-240 99-236 (255)
22 PRK12754 transketolase; Review 99.9 1.2E-22 2.6E-27 209.0 21.0 142 94-239 108-254 (663)
23 cd02013 TPP_Xsc_like Thiamine 99.9 5.9E-24 1.3E-28 189.2 9.4 158 61-234 3-182 (196)
24 cd02007 TPP_DXS Thiamine pyrop 99.9 3.7E-23 8E-28 183.8 13.3 124 95-235 70-194 (195)
25 PTZ00089 transketolase; Provis 99.9 8E-22 1.7E-26 204.1 22.5 158 94-255 110-277 (661)
26 cd02004 TPP_BZL_OCoD_HPCL Thia 99.9 5E-23 1.1E-27 179.4 11.1 148 64-230 1-171 (172)
27 cd02015 TPP_AHAS Thiamine pyro 99.9 4.8E-23 1E-27 181.8 10.1 152 62-232 1-175 (186)
28 PRK05899 transketolase; Review 99.9 1.4E-21 3E-26 201.9 21.9 143 94-241 112-258 (624)
29 PRK11864 2-ketoisovalerate fer 99.9 1.9E-21 4.1E-26 181.8 19.8 233 50-296 14-297 (300)
30 PRK12753 transketolase; Review 99.9 1.7E-21 3.6E-26 201.5 20.4 142 94-239 108-254 (663)
31 cd02011 TPP_PK Thiamine pyroph 99.9 4.1E-22 8.8E-27 179.0 13.4 186 27-236 1-208 (227)
32 cd02017 TPP_E1_EcPDC_like Thia 99.9 6.1E-21 1.3E-25 182.8 21.8 141 94-238 112-324 (386)
33 COG3959 Transketolase, N-termi 99.9 4.9E-21 1.1E-25 168.4 18.8 130 93-233 112-243 (243)
34 COG0021 TktA Transketolase [Ca 99.9 1.4E-20 3E-25 187.2 24.3 140 94-238 110-255 (663)
35 cd02002 TPP_BFDC Thiamine pyro 99.9 5.4E-22 1.2E-26 173.6 11.2 149 62-230 1-178 (178)
36 PF00456 Transketolase_N: Tran 99.9 3E-21 6.4E-26 184.0 16.6 142 94-240 105-252 (332)
37 PLN02790 transketolase 99.9 5.6E-21 1.2E-25 197.6 19.9 141 94-239 99-246 (654)
38 cd02010 TPP_ALS Thiamine pyrop 99.9 3.5E-22 7.5E-27 175.1 8.4 149 65-232 2-171 (177)
39 cd02003 TPP_IolD Thiamine pyro 99.9 9.1E-22 2E-26 176.4 11.3 150 66-234 3-187 (205)
40 cd02008 TPP_IOR_alpha Thiamine 99.9 5.5E-21 1.2E-25 167.6 13.6 159 56-230 4-176 (178)
41 PRK05444 1-deoxy-D-xylulose-5- 99.9 1.2E-20 2.6E-25 193.3 17.6 136 94-239 111-250 (580)
42 cd02014 TPP_POX Thiamine pyrop 99.9 2.8E-21 6.2E-26 169.4 10.7 152 62-232 2-174 (178)
43 COG0028 IlvB Thiamine pyrophos 99.8 2.7E-21 5.9E-26 196.1 10.2 150 63-233 360-533 (550)
44 TIGR03186 AKGDH_not_PDH alpha- 99.8 7.1E-20 1.5E-24 191.2 20.6 213 19-239 99-396 (889)
45 TIGR00759 aceE pyruvate dehydr 99.8 8.1E-20 1.8E-24 188.9 20.3 141 94-237 183-394 (885)
46 cd00568 TPP_enzymes Thiamine p 99.8 2.4E-21 5.3E-26 167.3 7.7 118 94-230 40-168 (168)
47 PRK06163 hypothetical protein; 99.8 1.4E-20 3.1E-25 167.9 12.9 166 62-251 13-189 (202)
48 TIGR01504 glyox_carbo_lig glyo 99.8 4.1E-21 9E-26 197.2 9.6 156 61-233 368-557 (588)
49 cd02001 TPP_ComE_PpyrDC Thiami 99.8 9.4E-21 2E-25 162.8 10.2 114 99-232 41-156 (157)
50 cd02005 TPP_PDC_IPDC Thiamine 99.8 1.1E-20 2.3E-25 166.5 10.1 151 62-232 2-175 (183)
51 TIGR00204 dxs 1-deoxy-D-xylulo 99.8 8.9E-20 1.9E-24 187.6 18.1 199 21-239 37-282 (617)
52 cd03372 TPP_ComE Thiamine pyro 99.8 7.7E-20 1.7E-24 160.5 14.2 116 99-235 41-159 (179)
53 PRK12474 hypothetical protein; 99.8 3.1E-20 6.6E-25 188.2 11.6 151 61-230 340-518 (518)
54 PRK07418 acetolactate synthase 99.8 1.8E-20 4E-25 193.5 10.2 152 61-232 386-560 (616)
55 cd03371 TPP_PpyrDC Thiamine py 99.8 4.6E-20 1E-24 163.1 10.8 118 99-235 47-167 (188)
56 cd02009 TPP_SHCHC_synthase Thi 99.8 1.4E-20 3E-25 164.6 7.3 145 66-230 5-174 (175)
57 PRK09107 acetolactate synthase 99.8 1.9E-20 4.1E-25 192.6 9.3 152 61-232 379-555 (595)
58 PRK07586 hypothetical protein; 99.8 2.9E-20 6.3E-25 188.2 10.3 151 61-230 336-514 (514)
59 PRK06154 hypothetical protein; 99.8 3.9E-20 8.5E-25 189.2 11.3 156 61-232 380-556 (565)
60 TIGR03846 sulfopy_beta sulfopy 99.8 6.8E-20 1.5E-24 161.1 10.7 114 99-233 41-158 (181)
61 PRK06725 acetolactate synthase 99.8 4.2E-20 9.1E-25 189.1 10.6 153 61-232 372-546 (570)
62 PRK11269 glyoxylate carboligas 99.8 2.8E-20 6E-25 191.3 9.0 158 61-233 369-558 (591)
63 PRK08979 acetolactate synthase 99.8 3.8E-20 8.3E-25 189.6 10.0 152 61-232 371-547 (572)
64 cd03375 TPP_OGFOR Thiamine pyr 99.8 9E-20 1.9E-24 161.9 10.8 138 78-233 29-186 (193)
65 PRK07979 acetolactate synthase 99.8 4.7E-20 1E-24 189.1 10.3 156 61-232 371-549 (574)
66 TIGR02418 acolac_catab acetola 99.8 5.9E-20 1.3E-24 187.0 10.8 155 61-234 358-533 (539)
67 PRK05858 hypothetical protein; 99.8 6.1E-20 1.3E-24 187.0 10.9 153 61-233 357-532 (542)
68 PRK07524 hypothetical protein; 99.8 4.6E-20 1E-24 187.6 10.0 155 62-235 358-533 (535)
69 PRK07525 sulfoacetaldehyde ace 99.8 4.1E-20 8.9E-25 190.0 9.3 159 61-235 385-566 (588)
70 TIGR03457 sulphoacet_xsc sulfo 99.8 5.8E-20 1.2E-24 188.6 10.1 158 61-234 380-560 (579)
71 PRK06965 acetolactate synthase 99.8 5.8E-20 1.3E-24 188.8 9.6 153 61-232 387-563 (587)
72 PF02775 TPP_enzyme_C: Thiamin 99.8 4.6E-20 9.9E-25 157.7 7.1 116 96-228 24-153 (153)
73 PRK06466 acetolactate synthase 99.8 1.1E-19 2.4E-24 186.3 11.0 153 61-232 373-549 (574)
74 TIGR03393 indolpyr_decarb indo 99.8 7E-20 1.5E-24 186.4 9.3 152 61-231 355-527 (539)
75 PRK09124 pyruvate dehydrogenas 99.8 1.2E-19 2.5E-24 186.2 10.7 153 61-232 358-531 (574)
76 PRK06048 acetolactate synthase 99.8 9.4E-20 2E-24 186.4 9.9 153 61-232 365-539 (561)
77 CHL00099 ilvB acetohydroxyacid 99.8 9.8E-20 2.1E-24 187.0 10.1 152 61-232 382-556 (585)
78 PRK08273 thiamine pyrophosphat 99.8 1.1E-19 2.4E-24 187.1 10.0 156 60-233 364-548 (597)
79 cd03376 TPP_PFOR_porB_like Thi 99.8 3.8E-19 8.2E-24 162.5 12.4 166 55-237 4-206 (235)
80 PRK08527 acetolactate synthase 99.8 1.6E-19 3.5E-24 184.7 10.7 154 61-234 364-541 (563)
81 PRK08617 acetolactate synthase 99.8 9.1E-20 2E-24 186.1 8.7 154 61-234 364-539 (552)
82 PRK06546 pyruvate dehydrogenas 99.8 1.7E-19 3.7E-24 184.9 10.6 154 61-233 358-532 (578)
83 PRK07710 acetolactate synthase 99.8 1E-19 2.3E-24 186.4 8.8 153 61-232 374-549 (571)
84 PRK06456 acetolactate synthase 99.8 1.5E-19 3.2E-24 185.3 9.9 155 61-234 371-548 (572)
85 PLN02470 acetolactate synthase 99.8 1.1E-19 2.3E-24 186.8 8.7 152 61-232 376-558 (585)
86 PRK12571 1-deoxy-D-xylulose-5- 99.8 2.2E-18 4.8E-23 177.9 18.4 199 21-239 45-291 (641)
87 PRK06457 pyruvate dehydrogenas 99.8 1.6E-19 3.4E-24 184.2 9.8 153 61-232 346-520 (549)
88 TIGR02720 pyruv_oxi_spxB pyruv 99.8 2.6E-19 5.6E-24 183.6 10.8 156 61-233 358-534 (575)
89 PRK07092 benzoylformate decarb 99.8 3.6E-19 7.9E-24 180.9 11.8 151 61-230 358-529 (530)
90 PRK08611 pyruvate oxidase; Pro 99.8 1.7E-19 3.6E-24 185.0 9.4 154 61-233 358-532 (576)
91 PRK08978 acetolactate synthase 99.8 2.4E-19 5.2E-24 182.9 10.1 155 61-234 351-528 (548)
92 PRK06112 acetolactate synthase 99.8 2.9E-19 6.3E-24 183.4 10.1 154 61-233 386-562 (578)
93 PRK08155 acetolactate synthase 99.8 3.4E-19 7.4E-24 182.3 10.6 153 61-232 369-544 (564)
94 PRK08322 acetolactate synthase 99.8 3.6E-19 7.8E-24 181.5 10.7 152 62-232 357-529 (547)
95 PRK08266 hypothetical protein; 99.8 3.3E-19 7.3E-24 181.6 10.4 156 62-236 352-530 (542)
96 PRK06882 acetolactate synthase 99.8 2.8E-19 6E-24 183.4 9.6 154 61-234 371-549 (574)
97 PLN02573 pyruvate decarboxylas 99.8 3.8E-19 8.3E-24 182.3 9.8 153 61-231 379-552 (578)
98 PRK07282 acetolactate synthase 99.8 3E-19 6.4E-24 182.8 8.8 152 61-232 368-542 (566)
99 PRK13012 2-oxoacid dehydrogena 99.8 1.3E-17 2.7E-22 175.1 20.8 211 19-237 113-408 (896)
100 PRK08327 acetolactate synthase 99.8 1.2E-18 2.7E-23 178.4 13.0 158 61-231 384-567 (569)
101 PRK08199 thiamine pyrophosphat 99.8 5.4E-19 1.2E-23 180.6 10.2 154 61-233 366-540 (557)
102 PRK09628 oorB 2-oxoglutarate-a 99.8 7.4E-19 1.6E-23 163.6 9.0 155 62-233 26-203 (277)
103 PRK07789 acetolactate synthase 99.8 5.7E-19 1.2E-23 182.3 8.8 153 61-232 397-577 (612)
104 TIGR00118 acolac_lg acetolacta 99.8 5.9E-19 1.3E-23 180.4 8.8 152 61-232 362-537 (558)
105 PLN02234 1-deoxy-D-xylulose-5- 99.8 1E-17 2.2E-22 171.2 17.6 199 21-240 103-330 (641)
106 PLN02582 1-deoxy-D-xylulose-5- 99.8 1.4E-17 3.1E-22 171.5 18.2 198 21-240 70-329 (677)
107 PRK07064 hypothetical protein; 99.8 2.1E-18 4.7E-23 175.7 11.8 149 65-232 359-529 (544)
108 TIGR03394 indol_phenyl_DC indo 99.8 9.4E-19 2E-23 177.9 8.8 151 61-231 355-521 (535)
109 PRK05261 putative phosphoketol 99.8 1E-17 2.2E-22 173.2 16.4 205 19-237 47-289 (785)
110 TIGR03254 oxalate_oxc oxalyl-C 99.8 1.9E-18 4.1E-23 176.5 10.9 153 61-233 365-540 (554)
111 PRK06276 acetolactate synthase 99.8 1.3E-18 2.9E-23 178.7 9.4 153 61-232 364-544 (586)
112 PRK09405 aceE pyruvate dehydro 99.8 2.6E-17 5.7E-22 172.1 18.9 209 20-236 106-399 (891)
113 PRK09259 putative oxalyl-CoA d 99.7 5.2E-18 1.1E-22 173.8 10.9 151 61-232 372-547 (569)
114 cd02018 TPP_PFOR Thiamine pyro 99.7 5.8E-18 1.3E-22 154.9 9.8 163 58-232 7-204 (237)
115 PRK05778 2-oxoglutarate ferred 99.7 1.8E-17 4E-22 155.9 13.1 136 97-253 67-223 (301)
116 PRK11866 2-oxoacid ferredoxin 99.7 2.5E-17 5.3E-22 153.4 11.4 121 95-232 54-193 (279)
117 PRK11867 2-oxoglutarate ferred 99.7 3E-17 6.5E-22 153.7 11.7 119 97-232 66-203 (286)
118 TIGR03297 Ppyr-DeCO2ase phosph 99.7 4.8E-17 1E-21 157.0 13.2 155 62-236 172-341 (361)
119 PRK07449 2-succinyl-5-enolpyru 99.7 6.8E-18 1.5E-22 172.9 7.6 151 61-231 375-549 (568)
120 PRK11869 2-oxoacid ferredoxin 99.7 2.8E-17 6E-22 153.0 10.2 119 97-232 57-194 (280)
121 KOG0523 Transketolase [Carbohy 99.7 2.7E-16 5.8E-21 155.2 15.5 136 94-239 112-249 (632)
122 KOG4166 Thiamine pyrophosphate 99.7 1.8E-17 4E-22 157.3 6.5 154 62-235 472-651 (675)
123 PRK11865 pyruvate ferredoxin o 99.7 1E-15 2.2E-20 143.5 17.8 187 92-292 61-296 (299)
124 TIGR02177 PorB_KorB 2-oxoacid: 99.7 4.3E-16 9.3E-21 145.5 13.1 119 96-232 49-187 (287)
125 TIGR03336 IOR_alpha indolepyru 99.7 3.5E-16 7.5E-21 161.0 13.1 162 52-230 352-529 (595)
126 COG1154 Dxs Deoxyxylulose-5-ph 99.7 2.6E-15 5.6E-20 149.1 17.2 203 18-239 38-287 (627)
127 PF13292 DXP_synthase_N: 1-deo 99.7 1.6E-15 3.4E-20 138.0 13.3 194 17-230 33-270 (270)
128 PLN02225 1-deoxy-D-xylulose-5- 99.6 7.9E-14 1.7E-18 143.3 15.8 198 18-235 113-368 (701)
129 PLN02980 2-oxoglutarate decarb 99.5 1E-14 2.2E-19 164.5 9.1 154 61-234 693-892 (1655)
130 KOG1185 Thiamine pyrophosphate 99.5 1.8E-13 3.8E-18 132.4 13.6 153 62-232 380-561 (571)
131 COG3961 Pyruvate decarboxylase 99.5 1.9E-13 4.2E-18 133.6 10.2 152 62-232 363-536 (557)
132 COG3962 Acetolactate synthase 99.3 1.3E-11 2.8E-16 119.1 11.6 117 95-232 439-576 (617)
133 COG3960 Glyoxylate carboligase 99.3 5.9E-12 1.3E-16 117.2 5.6 163 61-239 369-564 (592)
134 COG1013 PorB Pyruvate:ferredox 99.1 1.5E-09 3.3E-14 102.1 14.7 120 95-232 65-205 (294)
135 PF09364 XFP_N: XFP N-terminal 99.1 2.2E-10 4.8E-15 108.3 6.6 201 19-238 45-288 (379)
136 KOG1184 Thiamine pyrophosphate 99.0 6.6E-10 1.4E-14 108.7 9.0 118 97-231 412-539 (561)
137 COG2609 AceE Pyruvate dehydrog 99.0 4.9E-09 1.1E-13 105.6 14.4 80 97-176 189-269 (887)
138 cd03377 TPP_PFOR_PNO Thiamine 98.8 1.1E-07 2.5E-12 91.1 13.1 157 129-292 151-361 (365)
139 COG4231 Indolepyruvate ferredo 98.4 1.8E-06 4E-11 87.1 9.6 181 31-229 343-552 (640)
140 COG3957 Phosphoketolase [Carbo 98.4 3.5E-06 7.6E-11 85.7 11.6 173 19-209 58-256 (793)
141 TIGR02176 pyruv_ox_red pyruvat 98.2 1.1E-05 2.4E-10 89.0 12.2 157 130-292 952-1161(1165)
142 COG1165 MenD 2-succinyl-6-hydr 97.9 1.8E-05 3.9E-10 79.0 6.3 110 105-234 427-549 (566)
143 PRK13030 2-oxoacid ferredoxin 97.9 4.9E-05 1.1E-09 83.1 10.2 158 54-228 425-600 (1159)
144 PRK09193 indolepyruvate ferred 97.7 0.00019 4E-09 78.5 10.6 119 97-228 478-614 (1165)
145 PRK13029 2-oxoacid ferredoxin 97.5 0.00033 7.3E-09 76.5 9.3 121 95-228 490-628 (1186)
146 cd06586 TPP_enzyme_PYR Pyrimid 96.9 0.0078 1.7E-07 50.6 9.1 105 105-228 47-152 (154)
147 cd07039 TPP_PYR_POX Pyrimidine 96.8 0.013 2.7E-07 50.6 9.8 93 130-229 65-157 (164)
148 cd07035 TPP_PYR_POX_like Pyrim 96.7 0.013 2.8E-07 49.6 9.2 77 147-228 75-153 (155)
149 TIGR03845 sulfopyru_alph sulfo 96.6 0.039 8.4E-07 47.3 11.8 107 103-228 44-152 (157)
150 PF02776 TPP_enzyme_N: Thiamin 96.5 0.022 4.7E-07 49.4 9.8 95 129-229 63-160 (172)
151 cd07038 TPP_PYR_PDC_IPDC_like 96.2 0.034 7.3E-07 47.8 8.9 92 132-228 63-160 (162)
152 cd07034 TPP_PYR_PFOR_IOR-alpha 95.9 0.05 1.1E-06 46.3 8.4 91 131-228 67-158 (160)
153 PRK07119 2-ketoisovalerate fer 95.8 0.069 1.5E-06 51.9 9.9 114 105-237 60-176 (352)
154 PRK08659 2-oxoglutarate ferred 95.6 0.094 2E-06 51.4 10.2 116 105-238 60-177 (376)
155 cd07037 TPP_PYR_MenD Pyrimidin 95.5 0.15 3.2E-06 44.0 9.9 94 131-229 63-161 (162)
156 TIGR03297 Ppyr-DeCO2ase phosph 94.9 0.16 3.5E-06 49.5 9.3 113 102-228 35-150 (361)
157 PRK08611 pyruvate oxidase; Pro 94.3 0.37 8E-06 49.9 10.9 94 130-230 70-163 (576)
158 PRK09627 oorA 2-oxoglutarate-a 94.1 0.34 7.4E-06 47.5 9.5 116 105-238 59-176 (375)
159 TIGR03710 OAFO_sf 2-oxoacid:ac 94.0 0.3 6.6E-06 50.4 9.5 111 105-232 249-362 (562)
160 KOG4166 Thiamine pyrophosphate 94.0 0.31 6.6E-06 48.0 8.8 95 127-228 153-248 (675)
161 PRK06457 pyruvate dehydrogenas 94.0 0.39 8.4E-06 49.4 10.3 95 130-231 66-160 (549)
162 TIGR03254 oxalate_oxc oxalyl-C 93.9 0.4 8.7E-06 49.3 10.1 96 130-230 67-163 (554)
163 PRK08366 vorA 2-ketoisovalerat 93.5 0.62 1.4E-05 45.9 10.3 110 105-234 61-170 (390)
164 PF01855 POR_N: Pyruvate flavo 93.5 0.27 5.9E-06 44.9 7.2 113 105-237 48-160 (230)
165 PRK08155 acetolactate synthase 93.4 0.63 1.4E-05 48.0 10.7 93 131-230 79-172 (564)
166 PRK06725 acetolactate synthase 93.4 0.51 1.1E-05 48.8 9.9 95 130-231 79-174 (570)
167 TIGR03457 sulphoacet_xsc sulfo 93.3 0.61 1.3E-05 48.3 10.5 93 130-230 66-159 (579)
168 PRK07418 acetolactate synthase 93.3 0.58 1.3E-05 48.8 10.2 93 130-230 87-181 (616)
169 PRK07979 acetolactate synthase 93.2 0.55 1.2E-05 48.5 10.0 95 130-231 69-164 (574)
170 PRK08978 acetolactate synthase 93.2 0.87 1.9E-05 46.7 11.3 93 130-230 65-159 (548)
171 PRK07525 sulfoacetaldehyde ace 93.1 0.65 1.4E-05 48.2 10.3 93 130-230 70-163 (588)
172 PRK06466 acetolactate synthase 93.1 0.62 1.3E-05 48.2 10.0 95 130-231 69-164 (574)
173 PRK06456 acetolactate synthase 93.1 0.94 2E-05 46.8 11.3 93 131-230 71-164 (572)
174 PRK07524 hypothetical protein; 93.0 0.7 1.5E-05 47.3 10.3 97 130-231 66-164 (535)
175 COG0028 IlvB Thiamine pyrophos 93.0 0.48 1E-05 48.8 9.0 96 127-230 63-160 (550)
176 TIGR01504 glyox_carbo_lig glyo 93.0 0.58 1.2E-05 48.6 9.7 94 131-231 70-164 (588)
177 PRK07064 hypothetical protein; 93.0 0.75 1.6E-05 47.1 10.4 96 130-230 68-165 (544)
178 PLN02470 acetolactate synthase 92.8 0.89 1.9E-05 47.1 10.7 94 130-231 78-173 (585)
179 PRK09259 putative oxalyl-CoA d 92.8 0.78 1.7E-05 47.4 10.3 95 130-230 74-170 (569)
180 PRK07586 hypothetical protein; 92.7 0.73 1.6E-05 46.9 9.9 95 130-231 66-161 (514)
181 PRK07710 acetolactate synthase 92.7 0.78 1.7E-05 47.4 10.1 94 130-231 80-175 (571)
182 PRK07789 acetolactate synthase 92.7 0.79 1.7E-05 47.8 10.2 95 130-231 96-191 (612)
183 PRK06112 acetolactate synthase 92.6 0.89 1.9E-05 47.0 10.4 95 130-231 76-171 (578)
184 PRK06276 acetolactate synthase 92.5 0.83 1.8E-05 47.4 10.1 94 130-230 65-159 (586)
185 TIGR00118 acolac_lg acetolacta 92.5 0.97 2.1E-05 46.5 10.5 94 130-231 66-161 (558)
186 PRK08199 thiamine pyrophosphat 92.3 1.2 2.6E-05 45.9 10.9 94 130-230 73-167 (557)
187 PRK11269 glyoxylate carboligas 92.3 0.79 1.7E-05 47.6 9.6 94 131-231 71-165 (591)
188 PRK08266 hypothetical protein; 92.3 0.97 2.1E-05 46.3 10.1 95 131-231 71-168 (542)
189 PRK07282 acetolactate synthase 92.2 1 2.2E-05 46.6 10.1 94 130-231 75-170 (566)
190 PRK09107 acetolactate synthase 92.1 0.8 1.7E-05 47.6 9.4 95 130-231 76-171 (595)
191 PRK08322 acetolactate synthase 92.1 0.97 2.1E-05 46.3 9.9 95 130-231 65-160 (547)
192 PRK09124 pyruvate dehydrogenas 91.9 1.1 2.4E-05 46.3 10.1 93 130-230 66-161 (574)
193 PRK06882 acetolactate synthase 91.9 1.2 2.5E-05 46.1 10.2 95 130-231 69-164 (574)
194 TIGR02720 pyruv_oxi_spxB pyruv 91.8 1.2 2.6E-05 46.1 10.3 94 130-231 65-159 (575)
195 cd07033 TPP_PYR_DXS_TK_like Py 91.8 1.5 3.2E-05 37.3 9.3 99 106-228 52-154 (156)
196 PRK06048 acetolactate synthase 91.7 1.2 2.7E-05 45.8 10.2 94 130-230 72-166 (561)
197 TIGR03394 indol_phenyl_DC indo 91.6 1 2.2E-05 46.2 9.4 97 130-231 65-165 (535)
198 PRK08979 acetolactate synthase 91.6 1.1 2.5E-05 46.2 9.8 95 130-231 69-164 (572)
199 PRK08273 thiamine pyrophosphat 91.4 0.97 2.1E-05 47.0 9.1 94 130-231 69-164 (597)
200 PRK06965 acetolactate synthase 91.3 1.7 3.6E-05 45.2 10.6 94 130-231 86-181 (587)
201 PRK12474 hypothetical protein; 91.2 1.4 3E-05 45.0 9.8 94 130-231 70-165 (518)
202 PRK08527 acetolactate synthase 91.0 1.5 3.3E-05 45.2 10.0 95 130-231 68-163 (563)
203 PRK08617 acetolactate synthase 90.9 1.4 3E-05 45.3 9.6 94 130-231 69-164 (552)
204 COG0674 PorA Pyruvate:ferredox 90.8 1.7 3.8E-05 42.4 9.6 108 105-231 59-166 (365)
205 PRK09622 porA pyruvate flavodo 90.7 1.7 3.7E-05 43.1 9.7 108 105-232 68-177 (407)
206 PRK05858 hypothetical protein; 90.6 1.7 3.6E-05 44.7 9.9 92 131-230 70-163 (542)
207 TIGR02418 acolac_catab acetola 90.6 1.8 3.8E-05 44.4 10.0 94 130-231 63-158 (539)
208 PRK07092 benzoylformate decarb 90.5 2.2 4.9E-05 43.6 10.7 96 130-231 75-171 (530)
209 CHL00099 ilvB acetohydroxyacid 90.4 1.8 3.9E-05 44.9 9.9 94 130-231 78-173 (585)
210 PRK06546 pyruvate dehydrogenas 89.8 2.4 5.2E-05 43.9 10.3 92 131-230 69-161 (578)
211 PRK08327 acetolactate synthase 89.7 1.4 3E-05 45.5 8.4 95 130-229 77-179 (569)
212 TIGR00173 menD 2-succinyl-5-en 89.6 1.5 3.2E-05 43.7 8.3 96 130-231 65-166 (432)
213 cd07036 TPP_PYR_E1-PDHc-beta_l 89.1 2 4.2E-05 37.2 7.6 99 105-227 56-164 (167)
214 PRK08367 porA pyruvate ferredo 88.8 3.7 8.1E-05 40.5 10.3 112 105-237 62-175 (394)
215 PLN02573 pyruvate decarboxylas 87.8 2.3 5.1E-05 44.0 8.6 98 129-231 79-182 (578)
216 TIGR03336 IOR_alpha indolepyru 87.3 4.4 9.4E-05 42.2 10.2 161 27-237 5-168 (595)
217 PRK06154 hypothetical protein; 86.9 3.4 7.3E-05 42.7 9.1 91 132-231 85-176 (565)
218 PLN02683 pyruvate dehydrogenas 85.0 5.1 0.00011 39.0 8.8 100 105-227 86-194 (356)
219 PRK11892 pyruvate dehydrogenas 84.5 5 0.00011 40.5 8.7 100 105-227 201-309 (464)
220 TIGR00204 dxs 1-deoxy-D-xylulo 83.9 5.8 0.00013 41.6 9.2 103 105-228 364-467 (617)
221 COG4032 Predicted thiamine-pyr 83.3 2.7 5.9E-05 35.3 5.2 106 105-228 54-161 (172)
222 PTZ00089 transketolase; Provis 82.1 9.4 0.0002 40.4 10.0 90 130-228 429-519 (661)
223 PF02779 Transket_pyr: Transke 81.2 6 0.00013 34.2 7.0 105 105-228 60-170 (178)
224 PLN02980 2-oxoglutarate decarb 81.0 4.9 0.00011 47.0 8.0 95 129-229 365-465 (1655)
225 TIGR00232 tktlase_bact transke 80.5 8.7 0.00019 40.5 9.0 82 140-228 430-512 (653)
226 TIGR00173 menD 2-succinyl-5-en 80.0 0.67 1.5E-05 46.1 0.6 54 61-114 366-431 (432)
227 PRK12315 1-deoxy-D-xylulose-5- 80.0 8.4 0.00018 40.0 8.6 89 130-228 345-434 (581)
228 cd01460 vWA_midasin VWA_Midasi 79.8 36 0.00078 31.8 12.0 84 131-215 166-257 (266)
229 TIGR03393 indolpyr_decarb indo 79.5 12 0.00026 38.3 9.6 96 130-231 65-166 (539)
230 PLN02234 1-deoxy-D-xylulose-5- 79.2 8.3 0.00018 40.6 8.3 105 106-234 412-518 (641)
231 PLN02582 1-deoxy-D-xylulose-5- 79.0 9.9 0.00021 40.3 8.8 105 106-234 411-517 (677)
232 PRK05444 1-deoxy-D-xylulose-5- 78.9 9.1 0.0002 39.7 8.5 101 106-228 334-436 (580)
233 PLN02225 1-deoxy-D-xylulose-5- 78.7 12 0.00026 39.8 9.2 102 105-228 435-538 (701)
234 PRK12571 1-deoxy-D-xylulose-5- 75.8 15 0.00033 38.7 9.2 100 106-228 374-476 (641)
235 PLN02790 transketolase 74.8 25 0.00053 37.2 10.4 76 147-228 433-509 (654)
236 smart00861 Transket_pyr Transk 74.7 18 0.0004 30.7 8.0 100 106-228 62-164 (168)
237 PRK05899 transketolase; Review 72.2 19 0.00041 37.7 8.9 75 145-228 405-483 (624)
238 PRK13010 purU formyltetrahydro 71.6 22 0.00047 33.6 8.3 55 127-200 92-149 (289)
239 PTZ00182 3-methyl-2-oxobutanat 70.6 24 0.00051 34.4 8.5 62 156-227 140-202 (355)
240 COG3958 Transketolase, C-termi 70.3 28 0.00061 32.9 8.5 108 100-228 55-165 (312)
241 PF04273 DUF442: Putative phos 70.0 7.9 0.00017 31.0 4.3 76 147-230 17-95 (110)
242 PRK09212 pyruvate dehydrogenas 70.0 23 0.0005 34.0 8.3 101 105-228 63-172 (327)
243 COG0299 PurN Folate-dependent 69.5 37 0.00079 30.2 8.6 81 130-228 2-85 (200)
244 COG0021 TktA Transketolase [Ca 69.4 18 0.00039 37.7 7.6 77 147-228 442-518 (663)
245 TIGR02176 pyruv_ox_red pyruvat 66.7 33 0.00071 38.8 9.7 108 105-232 63-171 (1165)
246 PRK12753 transketolase; Review 66.3 42 0.00091 35.5 9.9 82 140-228 436-518 (663)
247 TIGR00655 PurU formyltetrahydr 65.5 37 0.0008 31.9 8.4 56 127-201 83-141 (280)
248 PRK07449 2-succinyl-5-enolpyru 63.9 24 0.00052 36.4 7.5 34 130-166 74-107 (568)
249 PLN02331 phosphoribosylglycina 62.4 46 0.001 29.8 8.1 54 131-201 2-58 (207)
250 PRK12754 transketolase; Review 61.7 61 0.0013 34.4 10.0 82 140-228 436-518 (663)
251 PRK06027 purU formyltetrahydro 60.0 50 0.0011 31.1 8.3 55 127-200 88-145 (286)
252 COG2205 KdpD Osmosensitive K+ 59.0 23 0.00051 38.0 6.3 97 129-232 249-345 (890)
253 PRK11032 hypothetical protein; 56.9 46 0.00099 28.6 6.8 40 259-298 30-69 (160)
254 COG1240 ChlD Mg-chelatase subu 55.7 1.1E+02 0.0023 28.5 9.3 97 102-208 150-254 (261)
255 PRK13683 hypothetical protein; 55.1 18 0.0004 27.5 3.5 41 191-235 13-53 (87)
256 PF13519 VWA_2: von Willebrand 54.8 65 0.0014 26.4 7.5 71 129-210 99-169 (172)
257 PRK13406 bchD magnesium chelat 54.2 1.2E+02 0.0027 31.6 10.7 98 102-212 472-581 (584)
258 PF08640 U3_assoc_6: U3 small 53.6 31 0.00066 26.2 4.7 42 264-310 9-50 (83)
259 COG1303 Uncharacterized protei 52.8 32 0.0007 29.5 5.0 48 180-230 19-66 (179)
260 PF09851 SHOCT: Short C-termin 51.1 23 0.00051 21.5 3.0 27 257-284 3-29 (31)
261 CHL00144 odpB pyruvate dehydro 50.7 89 0.0019 30.0 8.5 32 192-227 139-171 (327)
262 cd01451 vWA_Magnesium_chelatas 49.0 1.7E+02 0.0036 24.9 10.0 69 130-207 99-173 (178)
263 COG3453 Uncharacterized protei 47.7 65 0.0014 26.4 5.8 47 180-230 46-96 (130)
264 COG3172 NadR Predicted ATPase/ 46.5 48 0.001 28.8 5.2 69 150-218 107-182 (187)
265 PRK05647 purN phosphoribosylgl 45.9 81 0.0018 28.0 6.9 56 130-202 3-61 (200)
266 COG3707 AmiR Response regulato 45.8 1.7E+02 0.0038 25.9 8.7 103 147-285 66-174 (194)
267 COG1107 Archaea-specific RecJ- 44.2 36 0.00077 35.3 4.7 52 146-206 404-457 (715)
268 COG4231 Indolepyruvate ferredo 44.1 3.1E+02 0.0068 28.8 11.5 166 26-238 15-181 (640)
269 COG1154 Dxs Deoxyxylulose-5-ph 41.7 1.6E+02 0.0036 30.7 9.0 94 129-235 382-478 (627)
270 PF00140 Sigma70_r1_2: Sigma-7 40.5 56 0.0012 20.6 3.7 34 257-290 2-35 (37)
271 KOG2882 p-Nitrophenyl phosphat 40.5 69 0.0015 30.4 5.7 56 135-204 34-89 (306)
272 KOG0369 Pyruvate carboxylase [ 40.1 69 0.0015 33.9 6.0 73 133-232 162-237 (1176)
273 PRK01322 6-carboxyhexanoate--C 38.0 1.7E+02 0.0037 27.0 7.7 76 145-229 157-241 (242)
274 TIGR01204 bioW 6-carboxyhexano 37.8 1.5E+02 0.0032 27.1 7.2 74 145-227 150-232 (232)
275 cd00640 Trp-synth-beta_II Tryp 36.9 2.1E+02 0.0045 25.6 8.4 40 150-201 66-105 (244)
276 PRK10490 sensor protein KdpD; 36.1 1.6E+02 0.0034 32.4 8.6 93 129-229 251-344 (895)
277 cd01455 vWA_F11C1-5a_type Von 36.0 2.9E+02 0.0063 24.4 8.7 62 128-200 110-174 (191)
278 PLN02828 formyltetrahydrofolat 34.8 2.8E+02 0.0061 25.9 8.9 59 127-199 69-130 (268)
279 TIGR02442 Cob-chelat-sub cobal 34.4 2.1E+02 0.0047 30.0 9.0 88 103-199 538-633 (633)
280 PRK13011 formyltetrahydrofolat 34.2 2.4E+02 0.0051 26.6 8.4 52 129-199 90-144 (286)
281 COG0769 MurE UDP-N-acetylmuram 34.0 2.1E+02 0.0044 29.1 8.5 92 130-238 359-451 (475)
282 TIGR00639 PurN phosphoribosylg 33.6 1.7E+02 0.0036 25.8 6.9 54 130-199 2-57 (190)
283 TIGR03186 AKGDH_not_PDH alpha- 33.5 2.8E+02 0.0061 30.5 9.7 88 138-228 597-688 (889)
284 PLN03013 cysteine synthase 33.4 1.5E+02 0.0034 29.6 7.3 38 152-201 193-230 (429)
285 TIGR01139 cysK cysteine syntha 33.1 1.9E+02 0.0042 26.9 7.7 38 152-201 75-112 (298)
286 PF02979 NHase_alpha: Nitrile 33.0 90 0.0019 27.5 4.9 29 259-287 9-37 (188)
287 PF07295 DUF1451: Protein of u 32.8 1E+02 0.0022 26.0 5.1 40 258-297 19-58 (146)
288 cd05710 SIS_1 A subgroup of th 32.6 95 0.0021 24.7 4.8 40 127-168 46-85 (120)
289 PF05209 MinC_N: Septum format 31.9 77 0.0017 24.6 4.0 43 188-230 10-54 (99)
290 PF01380 SIS: SIS domain SIS d 31.8 82 0.0018 24.8 4.4 39 127-167 52-90 (131)
291 cd08325 CARD_CASP1-like Caspas 31.7 1.1E+02 0.0024 23.0 4.7 39 255-293 14-52 (83)
292 PRK13938 phosphoheptose isomer 31.4 1.8E+02 0.0038 25.8 6.7 40 127-168 112-151 (196)
293 PRK04346 tryptophan synthase s 31.3 4.2E+02 0.009 26.2 9.9 73 107-200 92-164 (397)
294 PF06707 DUF1194: Protein of u 31.0 3.9E+02 0.0085 23.9 9.8 79 128-214 115-198 (205)
295 COG2873 MET17 O-acetylhomoseri 30.8 71 0.0015 31.4 4.3 44 4-50 64-107 (426)
296 COG0777 AccD Acetyl-CoA carbox 30.2 1.8E+02 0.0039 27.3 6.6 66 98-168 130-206 (294)
297 cd05017 SIS_PGI_PMI_1 The memb 29.9 1E+02 0.0022 24.5 4.5 35 128-164 43-77 (119)
298 PRK13034 serine hydroxymethylt 29.8 1.1E+02 0.0025 30.1 5.8 57 4-62 72-132 (416)
299 PRK06381 threonine synthase; V 29.2 2.8E+02 0.006 26.1 8.2 39 151-201 80-118 (319)
300 COG2515 Acd 1-aminocyclopropan 29.2 2.4E+02 0.0051 27.1 7.3 108 132-255 66-176 (323)
301 KOG1201 Hydroxysteroid 17-beta 29.1 4.2E+02 0.0091 25.2 9.0 82 129-228 37-119 (300)
302 cd05014 SIS_Kpsf KpsF-like pro 28.9 1.2E+02 0.0026 24.0 4.8 39 128-168 47-85 (128)
303 cd05008 SIS_GlmS_GlmD_1 SIS (S 28.6 1.2E+02 0.0026 23.9 4.8 37 128-166 46-82 (126)
304 PF10925 DUF2680: Protein of u 28.5 1.9E+02 0.0042 20.4 5.1 32 260-291 21-52 (59)
305 PF03744 BioW: 6-carboxyhexano 28.2 1.9E+02 0.0042 26.5 6.4 74 145-227 157-239 (239)
306 cd01453 vWA_transcription_fact 27.1 4.1E+02 0.0088 22.9 8.4 66 129-208 107-173 (183)
307 cd08323 CARD_APAF1 Caspase act 26.7 70 0.0015 24.4 2.8 26 259-284 16-41 (86)
308 PF10415 FumaraseC_C: Fumarase 26.1 77 0.0017 22.0 2.7 20 262-281 28-47 (55)
309 PF08312 cwf21: cwf21 domain; 26.0 1.9E+02 0.0042 19.3 4.5 31 259-290 13-43 (46)
310 KOG3107 Predicted haloacid deh 25.8 90 0.002 30.7 4.0 26 130-162 424-449 (468)
311 PF06506 PrpR_N: Propionate ca 25.7 95 0.0021 26.6 3.9 83 131-218 78-168 (176)
312 KOG1184 Thiamine pyrophosphate 25.6 1.6E+02 0.0034 30.2 5.7 98 130-232 68-171 (561)
313 PRK06702 O-acetylhomoserine am 25.3 1E+02 0.0023 30.8 4.6 44 4-50 63-106 (432)
314 COG3960 Glyoxylate carboligase 25.2 1.6E+02 0.0036 28.5 5.5 112 128-244 66-178 (592)
315 PF13899 Thioredoxin_7: Thiore 25.2 59 0.0013 23.8 2.2 19 210-228 6-24 (82)
316 COG0133 TrpB Tryptophan syntha 25.2 6.4E+02 0.014 24.5 9.5 86 106-215 88-175 (396)
317 TIGR01275 ACC_deam_rel pyridox 25.0 3.7E+02 0.008 25.1 8.1 44 148-202 71-115 (311)
318 TIGR01117 mmdA methylmalonyl-C 24.6 1.1E+02 0.0023 31.5 4.5 19 97-115 89-107 (512)
319 TIGR00260 thrC threonine synth 24.6 3.6E+02 0.0077 25.4 8.0 45 151-207 88-132 (328)
320 PRK06988 putative formyltransf 24.3 1.8E+02 0.0039 27.6 5.8 59 133-200 5-63 (312)
321 PF03385 DUF288: Protein of un 24.3 2.3E+02 0.0049 27.8 6.3 74 257-336 74-154 (390)
322 PF14399 Transpep_BrtH: NlpC/p 23.7 3.8E+02 0.0082 24.9 7.9 45 183-231 54-98 (317)
323 TIGR00441 gmhA phosphoheptose 23.7 1.4E+02 0.003 25.0 4.5 40 127-168 78-117 (154)
324 PRK00278 trpC indole-3-glycero 23.6 5.8E+02 0.013 23.4 9.1 88 128-231 82-170 (260)
325 PRK00414 gmhA phosphoheptose i 23.6 1.5E+02 0.0033 25.9 4.8 40 127-168 110-149 (192)
326 cd08329 CARD_BIRC2_BIRC3 Caspa 23.5 92 0.002 24.1 3.0 30 257-286 23-52 (94)
327 smart00115 CASc Caspase, inter 23.2 3E+02 0.0065 24.9 6.9 47 182-228 33-79 (241)
328 PRK13936 phosphoheptose isomer 23.0 1.5E+02 0.0033 26.0 4.7 40 127-168 110-149 (197)
329 PF11814 DUF3335: Peptidase_C3 22.8 3.8E+02 0.0082 24.1 7.1 91 132-236 45-144 (207)
330 cd01452 VWA_26S_proteasome_sub 22.4 4.2E+02 0.0092 23.2 7.4 34 130-163 108-142 (187)
331 cd08330 CARD_ASC_NALP1 Caspase 22.0 99 0.0022 23.2 2.9 27 258-284 16-42 (82)
332 TIGR00515 accD acetyl-CoA carb 21.7 1.5E+02 0.0032 28.0 4.6 42 129-170 119-168 (285)
333 COG0044 PyrC Dihydroorotase an 21.7 3.5E+02 0.0075 27.1 7.5 92 132-228 144-254 (430)
334 TIGR01323 nitrile_alph nitrile 21.5 1.3E+02 0.0028 26.4 3.7 29 259-287 3-31 (185)
335 TIGR01658 EYA-cons_domain eyes 21.3 1.4E+02 0.0031 27.7 4.2 27 130-163 230-256 (274)
336 TIGR03590 PseG pseudaminic aci 21.3 4.7E+02 0.01 24.1 7.9 35 133-167 2-41 (279)
337 PLN02569 threonine synthase 21.2 5.9E+02 0.013 25.9 9.1 38 152-200 205-242 (484)
338 CHL00174 accD acetyl-CoA carbo 21.1 1.6E+02 0.0034 28.0 4.6 43 129-171 132-182 (296)
339 PRK08197 threonine synthase; V 20.9 7.1E+02 0.015 24.3 9.5 39 151-201 144-182 (394)
340 TIGR03436 acidobact_VWFA VWFA- 20.8 6.7E+02 0.014 23.1 9.6 87 128-217 163-254 (296)
341 COG0075 Serine-pyruvate aminot 20.7 2.3E+02 0.0049 28.0 5.8 15 217-231 157-171 (383)
342 cd08326 CARD_CASP9 Caspase act 20.2 1.1E+02 0.0024 23.2 2.8 24 260-283 19-42 (84)
343 PF13933 HRXXH: Putative pepti 20.0 2.1E+02 0.0045 26.3 5.0 30 303-332 83-123 (245)
No 1
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=3.7e-84 Score=632.26 Aligned_cols=339 Identities=94% Similarity=1.484 Sum_probs=327.2
Q ss_pred CchhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCCCCeeeeCCCCcccccccCCCHHHHHHHhhCCCCCCCc
Q 019523 1 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR 80 (339)
Q Consensus 1 m~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~~D~i~~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~ 80 (339)
|+++|.||+++.++|++||++|++|++.||||+++|++++|+++||++++||+|+++|++|+++.++|+|++++.++.+.
T Consensus 95 M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~~~mael~Gk~~g~~~ 174 (433)
T PLN02374 95 MVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR 174 (433)
T ss_pred HHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHHHHHHHHcCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCE
Q 019523 81 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPI 160 (339)
Q Consensus 81 g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpv 160 (339)
|++|++|+.++++++.+.+++||+++|.|+|+|+|.|+++...+..+++++|||++|||++++|.|+|+||+|+.|+|||
T Consensus 175 GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPv 254 (433)
T PLN02374 175 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPI 254 (433)
T ss_pred CCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999998764333334688999999999999999999999999999999
Q ss_pred EEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCCC
Q 019523 161 VFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 240 (339)
Q Consensus 161 i~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~D 240 (339)
||||+||+|+++++...+...+++++++++||+++++|||+|+++|++++++|++++|++++|+|||+.|||++||+++|
T Consensus 255 IfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~GHs~~D 334 (433)
T PLN02374 255 VFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 334 (433)
T ss_pred EEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecCCcCCCC
Confidence 99999999999998887777889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHhhCChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhcccCCCCCCCCC
Q 019523 241 PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIG 320 (339)
Q Consensus 241 ~~~yr~~~e~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~ 320 (339)
++.||+++|+++|.++|||.+|+++|++.|++|++++++|+++++++|++++++|+++|.|+++++|++||++++.++|.
T Consensus 335 ~~~YR~~~e~~~~~~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~~~~~~~~ 414 (433)
T PLN02374 335 PDELRDPAEKAHYAARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPRSQLLENVFADPKGFGIG 414 (433)
T ss_pred ccccCCHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhccccCCcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCccccCCCC
Q 019523 321 PDGRYRCEDPKFTEGTAHV 339 (339)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~ 339 (339)
||++|||+|||||.||++|
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ 433 (433)
T PLN02374 415 PDGRYRCEDPKFTAGTAQV 433 (433)
T ss_pred CCcceeccCCCcccccccC
Confidence 9999999999999999987
No 2
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1e-82 Score=601.03 Aligned_cols=311 Identities=50% Similarity=0.830 Sum_probs=300.3
Q ss_pred CchhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCCC-CeeeeCCCCcccccccCCCHHHHHHHhhCCCCCCC
Q 019523 1 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DSVVSTYRDHVHALSKGVPARAVMSELFGKATGCC 79 (339)
Q Consensus 1 m~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~~-D~i~~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~ 79 (339)
|+++|.||+++.+++++||+.||+|++.||||+++|++++|+++ ||++|+||+|+++|++|+++.++|.+++++.++.+
T Consensus 36 M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~ 115 (358)
T COG1071 36 MLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLKEIMAELLGKATGPC 115 (358)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecCCCHHHHHHHHhccccCCC
Confidence 89999999999999999999999999999999999999999966 99999999999999999999999999999999999
Q ss_pred cCCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCC
Q 019523 80 RGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP 159 (339)
Q Consensus 80 ~g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp 159 (339)
+|++|++|+++..+++.+.++++|.++|.|+|+|+|.|+++ ..+.+++|++|||++++|.|||+||+|+.|+||
T Consensus 116 kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~------~~~~Va~~~~GDGat~qG~FhEalN~A~v~klP 189 (358)
T COG1071 116 KGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRG------TKDGVAVAFFGDGATNQGDFHEALNFAAVWKLP 189 (358)
T ss_pred CCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhC------CCCcEEEEEecCCccccchHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999984 245599999999999999999999999999999
Q ss_pred EEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCC
Q 019523 160 IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 239 (339)
Q Consensus 160 vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~ 239 (339)
|||||+||+|+||++...|...+.+..++.+||+|+++|||+|+++|++++++|+++||+++||+|||+.|||..|||++
T Consensus 190 vvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~s 269 (358)
T COG1071 190 VVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTS 269 (358)
T ss_pred EEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCC
Confidence 99999999999998888787777788899999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCHHHHHHHhhCChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhcccCCCCCC
Q 019523 240 DP-DELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGF 317 (339)
Q Consensus 240 D~-~~yr~~~e~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~~ 317 (339)
|+ .+||+++|.++|+.+|||.+++++|++.|++|++++++|+++++++|++++++|+.+|.|+++++|++||++.++.
T Consensus 270 Dd~~~YRskeE~~~~~~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ea~e~a~~~p~P~~~~~~~~Vy~~~~~~ 348 (358)
T COG1071 270 DDPSKYRSKEEVEEWKKRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEASPYPDVSELFEDVYAEGPPH 348 (358)
T ss_pred CCccccCCHHHHHHHhccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHhhhcccccCChh
Confidence 87 8899999999999999999999999999999999999999999999999999999999999999999999988763
No 3
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=2.2e-77 Score=574.28 Aligned_cols=320 Identities=43% Similarity=0.764 Sum_probs=306.6
Q ss_pred CchhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCCCCeeeeCCCCcccccccCCCHHHHHHHhhCCCCCCCc
Q 019523 1 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR 80 (339)
Q Consensus 1 m~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~~D~i~~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~ 80 (339)
|+++|.||+++.+++++|++.||+|++.||||++||++++|+++||+|++||+|+++|++|+++..+|++++++.++.+.
T Consensus 39 M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~~~ae~~g~~~g~~~ 118 (362)
T PLN02269 39 MYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSR 118 (362)
T ss_pred HHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHHHHHHHcCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCE
Q 019523 81 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPI 160 (339)
Q Consensus 81 g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpv 160 (339)
|++|++|+++++.++.+.++++|.++|+|+|+|+|.|++ +.+.+++|++|||++++|.|||+||+|+.|+||+
T Consensus 119 GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~-------~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPv 191 (362)
T PLN02269 119 GKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYN-------KEENVAFALYGDGAANQGQLFEALNIAALWDLPV 191 (362)
T ss_pred CCCCcccccchhcCccccCchhhccccHHHHHHHHHHHh-------CCCCeEEEEECCCCcccCHHHHHHHHhhccCcCE
Confidence 999999999999999999999999999999999999987 4678999999999999999999999999999999
Q ss_pred EEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCCC
Q 019523 161 VFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 240 (339)
Q Consensus 161 i~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~D 240 (339)
||||+||+|+++++...+...++++.++ +++|+++|||+|+++|+++++.|++++|+ ++|+|||+.|||..||+++|
T Consensus 192 vfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~D 268 (362)
T PLN02269 192 IFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMSD 268 (362)
T ss_pred EEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcCCCcCCCC
Confidence 9999999999999888777777887654 67999999999999999999999999999 99999999999999999999
Q ss_pred CC-CCCCHHHHHHHh-hCChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhcccCCCCC-C
Q 019523 241 PD-ELRDPAEKARYA-ARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKG-F 317 (339)
Q Consensus 241 ~~-~yr~~~e~~~~~-~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~-~ 317 (339)
++ .||+++|++.|+ .+|||.+|+++|+++|+++++++++++++++++|++++++|+++|.|+++++|++||+++.+ .
T Consensus 269 ~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~~~~~~ 348 (362)
T PLN02269 269 PGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVYVKGLGVE 348 (362)
T ss_pred CCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccCCCCCc
Confidence 85 899999999998 59999999999999999999999999999999999999999999999999999999998766 4
Q ss_pred CCCCCCcccccc-C
Q 019523 318 GIGPDGRYRCED-P 330 (339)
Q Consensus 318 ~~~~~~~~~~~~-~ 330 (339)
.|.+|+.++|+| |
T Consensus 349 ~~~~~~~~~~~~~~ 362 (362)
T PLN02269 349 SYGADRKEVRVVLP 362 (362)
T ss_pred eecCCcceecCcCC
Confidence 788999999999 6
No 4
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=3.1e-77 Score=571.31 Aligned_cols=313 Identities=70% Similarity=1.143 Sum_probs=301.0
Q ss_pred CchhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCCCCeeeeCCCCcccccccCCCHHHHHHHhhCCCCCCCc
Q 019523 1 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR 80 (339)
Q Consensus 1 m~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~~D~i~~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~ 80 (339)
|+++|.||+++.+++++|++.||+|++.||||+++|++.+|+++||+|++||+|+++|++|++|.++|++++++.++.+.
T Consensus 29 M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~ae~~g~~~g~~~ 108 (341)
T CHL00149 29 MLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPKNVMAELFGKETGCSR 108 (341)
T ss_pred HHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHHHHHHHHcCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCE
Q 019523 81 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPI 160 (339)
Q Consensus 81 g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpv 160 (339)
|++|++|+++.+.++.+++++||+++|.|+|+++|.|+++...+...++++|||++|||++++|.|+|+|++|++|+||+
T Consensus 109 Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPv 188 (341)
T CHL00149 109 GRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPI 188 (341)
T ss_pred CCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCE
Confidence 99999999998888889999999999999999999988754333334789999999999999999999999999999999
Q ss_pred EEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCCC
Q 019523 161 VFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 240 (339)
Q Consensus 161 i~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~D 240 (339)
||||+||+|+++++...+...+++++++++||+++++|||+|+.++++++++|++++|++++|+|||+.|||..||+++|
T Consensus 189 ifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~gHs~~D 268 (341)
T CHL00149 189 IFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFRGHSLAD 268 (341)
T ss_pred EEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCCCcCCCC
Confidence 99999999999998877777889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHhhCChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhcccCC
Q 019523 241 PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFAD 313 (339)
Q Consensus 241 ~~~yr~~~e~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~ 313 (339)
++.||+++|++.|+++|||.+|+++|++.|+++++++++++++++++|++++++|+++|.|+++++|++||++
T Consensus 269 ~~~YR~~~e~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~ 341 (341)
T CHL00149 269 PDELRSKQEKEAWVARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPNISDLKKYLFAD 341 (341)
T ss_pred CccCCCHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974
No 5
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2e-77 Score=546.68 Aligned_cols=325 Identities=47% Similarity=0.804 Sum_probs=313.5
Q ss_pred CchhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCCCCeeeeCCCCcccccccCCCHHHHHHHhhCCCCCCCc
Q 019523 1 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR 80 (339)
Q Consensus 1 m~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~~D~i~~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~ 80 (339)
|+++|+||..+..+|++.+|+||+|++.||||++||+-++|++.|.|.++||+|++.+.+|+++.++|.||+|+..+.++
T Consensus 68 M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~k 147 (394)
T KOG0225|consen 68 MQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVREVLAELMGRQAGCSK 147 (394)
T ss_pred HHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHHHHHHHHhcccccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCE
Q 019523 81 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPI 160 (339)
Q Consensus 81 g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpv 160 (339)
|.+||||++.+. |.+++|++|.++|.+.|+|+|.||++ .+.+++++.|||+.+||.++|++|+|..|+||+
T Consensus 148 GKGGSMHmy~k~--FyGGnGIVGAQiPLGaGia~A~kY~~-------~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~ 218 (394)
T KOG0225|consen 148 GKGGSMHMYAKN--FYGGNGIVGAQIPLGAGIAFAQKYNR-------EDAVCFALYGDGAANQGQVFEAFNMAALWKLPV 218 (394)
T ss_pred CCCcceeeeccc--ccCccceeccCCCccccHHHHHHhcc-------CCceEEEEeccccccchhHHHHhhHHHHhCCCE
Confidence 999999999864 89999999999999999999999984 578999999999999999999999999999999
Q ss_pred EEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCCC
Q 019523 161 VFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 240 (339)
Q Consensus 161 i~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~D 240 (339)
||||+||.|+++|+..+....++|.++. .| +|+++|||.|+++|.++.+.|.+++++++||.++|+.|||..|||++|
T Consensus 219 IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSD 296 (394)
T KOG0225|consen 219 IFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSD 296 (394)
T ss_pred EEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCC
Confidence 9999999999999999999999999998 45 999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCHHHHHHHh-hCChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhcccCCCCCCC
Q 019523 241 P-DELRDPAEKARYA-ARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFG 318 (339)
Q Consensus 241 ~-~~yr~~~e~~~~~-~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~~~ 318 (339)
| ..||+.+|+++.+ +||||..++++|++.++.|++|+++|+++++++|++++++|.++|.|++++++.|||...++.+
T Consensus 297 Pg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~~p~p~~~eL~~dvy~~~~~~~ 376 (394)
T KOG0225|consen 297 PGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATASPEPEPSELFTDVYVKGTGFE 376 (394)
T ss_pred CCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhccCCCcc
Confidence 9 6799999999887 7899999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCccccccCCccccCC
Q 019523 319 IGPDGRYRCEDPKFTEGTA 337 (339)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~ 337 (339)
+-+ ++++|+++++.++++
T Consensus 377 ~~g-~~~~~~~~~~~k~~~ 394 (394)
T KOG0225|consen 377 IRG-GRIDEEKWQFFKGVA 394 (394)
T ss_pred ccC-cccccccccccccCC
Confidence 877 779999999998874
No 6
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1.1e-75 Score=556.19 Aligned_cols=305 Identities=56% Similarity=0.974 Sum_probs=297.6
Q ss_pred CchhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCCCCeeeeCCCCcccccccCCCHHHHHHHhhCCCCCCCc
Q 019523 1 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR 80 (339)
Q Consensus 1 m~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~~D~i~~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~ 80 (339)
|+++|.||+++.++++||++.||+|++.||||+++|++.+|+++||+|++||+|+++|++|+++.++|++++++.++.+.
T Consensus 11 M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~~~g~~~g~~~ 90 (315)
T TIGR03182 11 MLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAELTGRATGCSK 90 (315)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHHHcCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCE
Q 019523 81 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPI 160 (339)
Q Consensus 81 g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpv 160 (339)
|++|++|+.+++.++.+.+++||+++|+|+|+++|.|++ +++++|||++|||++++|.|+|+|++|+.++||+
T Consensus 91 Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~-------~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPv 163 (315)
T TIGR03182 91 GKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYR-------GNDNVTACFFGDGAANQGQFYESFNMAALWKLPV 163 (315)
T ss_pred CCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHh-------CCCCEEEEEeCCCcccccHHHHHHHHhhccCcCE
Confidence 999999999999999999999999999999999998877 4789999999999999999999999999999999
Q ss_pred EEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCCC
Q 019523 161 VFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 240 (339)
Q Consensus 161 i~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~D 240 (339)
||||+||+|+++++...+...+++++++++||+++++|||+|+++|++++++|+++++++++|+|||+.|||..||+++|
T Consensus 164 i~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D 243 (315)
T TIGR03182 164 IFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSD 243 (315)
T ss_pred EEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCC
Confidence 99999999999998877777889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHhhCChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhcccC
Q 019523 241 PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFA 312 (339)
Q Consensus 241 ~~~yr~~~e~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~ 312 (339)
++.||+++|++.|+++|||.+|+++|++.|+++++++++++++++++|+++++.|++.|.|+++++|++||+
T Consensus 244 ~~~Yr~~~e~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 315 (315)
T TIGR03182 244 PAKYRSKEEVEEWRKRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYTDVYA 315 (315)
T ss_pred ccccCCHHHHHHHHhcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996
No 7
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1.1e-69 Score=520.08 Aligned_cols=299 Identities=37% Similarity=0.617 Sum_probs=283.4
Q ss_pred CchhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCCCCeeeeCCCCcccccccCCCHHHHHHHhhCCCCCCCc
Q 019523 1 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR 80 (339)
Q Consensus 1 m~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~~D~i~~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~ 80 (339)
|+++|.||+++.+++++|++ ||+|+++||||+++|++++|+++|+++++||+|+++|++|+++..+|++++++.++.
T Consensus 33 m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~h~~~l~~G~~~~~~~ae~~g~~~g~-- 109 (341)
T TIGR03181 33 MVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLVEILLYWRGDERGS-- 109 (341)
T ss_pred HHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHcCCCCEEEcchhhHHHHHHcCCCHHHHHHHhcCcCcCC--
Confidence 89999999999999999999 899999999999999999999999999999999999999999999999999987542
Q ss_pred CCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCE
Q 019523 81 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPI 160 (339)
Q Consensus 81 g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpv 160 (339)
+ .++..++.+.+++||+++|.|+|+|+|.|+. +++++|||++|||++++|.++|+|++|++|+||+
T Consensus 110 ------~-~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~-------~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPv 175 (341)
T TIGR03181 110 ------W-DPEGVNILPPNIPIGTQYLHAAGVAYALKLR-------GEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPV 175 (341)
T ss_pred ------C-CchhcCccCCCchHhcchhHHHhHHHHHHhh-------CCCCEEEEEecCCccccChHHHHHHHHhccCCCE
Confidence 1 1456788999999999999999999998887 5889999999999999999999999999999999
Q ss_pred EEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCCC
Q 019523 161 VFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 240 (339)
Q Consensus 161 i~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~D 240 (339)
||||+||+|+++++...+...+++.+++++||+++++|||+|+.+|++++++|+++++++++|+|||+.|||..||+++|
T Consensus 176 i~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D 255 (341)
T TIGR03181 176 VFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTAD 255 (341)
T ss_pred EEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCC
Confidence 99999999999887766667789999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCCHHHHHHHhhCChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhcccCCCCC
Q 019523 241 PD-ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKG 316 (339)
Q Consensus 241 ~~-~yr~~~e~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~ 316 (339)
++ .||+++|++.|+++|||.+|+++|++.|++|++++++|+++++++|++++++|+++|.|+++++|++||++.++
T Consensus 256 ~~~~YR~~~e~~~~~~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~a~~~p~P~~~~~~~~vy~~~~~ 332 (341)
T TIGR03181 256 DPTRYRTKEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPPPPVDDIFDHVYAELPP 332 (341)
T ss_pred CCccCCCHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccCCCH
Confidence 65 89999999999999999999999999999999999999999999999999999999999999999999997655
No 8
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=2.7e-69 Score=509.08 Aligned_cols=296 Identities=46% Similarity=0.753 Sum_probs=264.8
Q ss_pred CchhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCCCCeeeeCCCCcccccccCCCHHHHHHHhhCCCCCCCc
Q 019523 1 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR 80 (339)
Q Consensus 1 m~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~~D~i~~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~ 80 (339)
|+++|+||+++..++.++++.|++|++.||||++++++.+|+++||+|++||+|++.|++|+++.++|.+++++..+...
T Consensus 3 ~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~~g 82 (300)
T PF00676_consen 3 MMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGHGG 82 (300)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTSTTT
T ss_pred hHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCCCC
Confidence 67899999998888888888999999999999999999999999999999999999999999999999999999854433
Q ss_pred CCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCE
Q 019523 81 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPI 160 (339)
Q Consensus 81 g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpv 160 (339)
++. +.|...+..++.+.++++|.++|.|+|.|+|.|++ +.+.+++|++|||++++|.|+|+||+|+.|+|||
T Consensus 83 ~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~-------~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPv 154 (300)
T PF00676_consen 83 GRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYR-------GKDGVVVCFFGDGATSQGDFHEALNLAALWKLPV 154 (300)
T ss_dssp TGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHT-------TSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSE
T ss_pred Ccc-ccccccccceeeeccccccccCccccchhHhhhhc-------CCceeEEEEecCcccccCccHHHHHHHhhccCCe
Confidence 333 34455566678999999999999999999999987 5789999999999999999999999999999999
Q ss_pred EEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCCC
Q 019523 161 VFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 240 (339)
Q Consensus 161 i~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~D 240 (339)
||||+||+|+|+++...+++..+++++|++||+|+++|||+|+++|++++++|++++|+++||+|||+.|||..||+++|
T Consensus 155 ifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~D 234 (300)
T PF00676_consen 155 IFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESD 234 (300)
T ss_dssp EEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTS
T ss_pred EEEEecCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCCHHHHHHHhh-CChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhhCCCCChh
Q 019523 241 -PDELRDPAEKARYAA-RDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRS 304 (339)
Q Consensus 241 -~~~yr~~~e~~~~~~-~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~ 304 (339)
+..||+++|++.|++ +|||.+|+++|++.|++|++++++|+++++++|++++++|+++|.|+||
T Consensus 235 d~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~e 300 (300)
T PF00676_consen 235 DPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPEPDPE 300 (300)
T ss_dssp CGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHBC-G-
T ss_pred CccccCCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 567998999887665 5999999999999999999999999999999999999999999999985
No 9
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=1.6e-68 Score=503.38 Aligned_cols=288 Identities=51% Similarity=0.854 Sum_probs=277.2
Q ss_pred CchhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCCCCeeeeCCCCcccccccCCCHHHHHHHhhCCCCCCCc
Q 019523 1 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR 80 (339)
Q Consensus 1 m~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~~D~i~~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~ 80 (339)
|+++|.||+++.++++||++.||+|++.||||+++|++.+|+++||++++||+|+++|++|+++.++|++++++.++.+.
T Consensus 5 m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~g~~~ 84 (293)
T cd02000 5 MVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKETGPCK 84 (293)
T ss_pred HHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCE
Q 019523 81 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPI 160 (339)
Q Consensus 81 g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpv 160 (339)
|++|++|+..+..++.+.+|+||+++|+|+|+++|.|+. +++++|||++|||++++|.|+|+|++|++++||+
T Consensus 85 G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~-------~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPv 157 (293)
T cd02000 85 GRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYR-------GEDRVAVCFFGDGATNEGDFHEALNFAALWKLPV 157 (293)
T ss_pred CCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHh-------CCCCEEEEEeCCCccccchHHHHHHHHHhhCCCE
Confidence 999999999999999999999999999999999998887 5789999999999999999999999999999999
Q ss_pred EEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCC-
Q 019523 161 VFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA- 239 (339)
Q Consensus 161 i~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~- 239 (339)
||||+||+|+++++...+.+.+++++++++||+++++|||+|++++++++++|+++++++++|+|||+.|+|..||+++
T Consensus 158 i~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~d 237 (293)
T cd02000 158 IFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSD 237 (293)
T ss_pred EEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCC
Confidence 9999999999999877776788999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCCCCCHHHHHHHhhCChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHh
Q 019523 240 DPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFA 295 (339)
Q Consensus 240 D~~~yr~~~e~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a 295 (339)
|+..||+++|++.|+.+||+.+|+++|++.|++|++++++++++++++|++++++|
T Consensus 238 d~~~Yr~~~e~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a 293 (293)
T cd02000 238 DPSRYRTKEEVEEWKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred CcccCCCHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 46689999999999999999999999999999999999999999999999998875
No 10
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-58 Score=420.15 Aligned_cols=309 Identities=28% Similarity=0.455 Sum_probs=294.7
Q ss_pred CchhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCCCCeeeeCCCCcccccccCCCHHHHHHHhhCCCCCCCc
Q 019523 1 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR 80 (339)
Q Consensus 1 m~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~~D~i~~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~ 80 (339)
|.+.-.+|..+.+-+|||+| .|+.++.|+||+.+|.+++|.+.|.||+.||+-|.+|.+|.+++.++.+.+|..++.-+
T Consensus 95 M~~Ln~MD~IlYesQRQGRi-SFYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gk 173 (432)
T KOG1182|consen 95 MTLLNIMDRILYESQRQGRI-SFYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGK 173 (432)
T ss_pred HHHHHHHHHHHHHHhhcceE-EEEEeccchhhhhhhhhhhCCcccccccccccCceEEEcCccHHHHHHHhcCCcccccc
Confidence 66777888888999999999 58999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCE
Q 019523 81 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPI 160 (339)
Q Consensus 81 g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpv 160 (339)
|+++++|+.+.+.++...++++..++|.|+|+|+|.|..+ +.++.+||++|||++++|++|.++|+|+....||
T Consensus 174 GrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~------~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pv 247 (432)
T KOG1182|consen 174 GRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRK------KNNACAVTYFGDGAASEGDAHAAFNFAATLECPV 247 (432)
T ss_pred ccccccccCccccceEEecchhhhccchhhhhhhhhhhcc------cCCeEEEEEecCCcccccchhhhhhHHHHhCCCE
Confidence 9999999999999999999999999999999999999775 4568999999999999999999999999999999
Q ss_pred EEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCCC
Q 019523 161 VFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 240 (339)
Q Consensus 161 i~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~D 240 (339)
||+|-||+|+|||++..|.....++-++.+||+..++|||+|+++||.|+++|.+.|....+|+|||+.|||...||++|
T Consensus 248 if~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSD 327 (432)
T KOG1182|consen 248 IFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSD 327 (432)
T ss_pred EEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCC
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCCCCHHHHHHHhh-CChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhcccCCCCC
Q 019523 241 P-DELRDPAEKARYAA-RDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKG 316 (339)
Q Consensus 241 ~-~~yr~~~e~~~~~~-~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~ 316 (339)
+ ..||+.+|++-|.. +.||.+|++++...|+|+++...+++++++++|-++++.|++-++|.+.++|.+||.+.+.
T Consensus 328 DSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K~~~~~lF~dVYd~~P~ 405 (432)
T KOG1182|consen 328 DSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVLEAIAAAEKKEKPNLTELFEDVYDEMPK 405 (432)
T ss_pred ccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhhhH
Confidence 6 57999999999975 6899999999999999999999999999999999999999999999999999999988765
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=5.8e-54 Score=448.90 Aligned_cols=299 Identities=19% Similarity=0.254 Sum_probs=263.4
Q ss_pred CchhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHH------ccCCCCeeee-CCCCcccccc--cCCCHHHHHHHh
Q 019523 1 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIK------LLKKEDSVVS-TYRDHVHALS--KGVPARAVMSEL 71 (339)
Q Consensus 1 m~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~------~l~~~D~i~~-~~R~~~~~l~--~g~~p~~~~~el 71 (339)
|+++|.||+++.++|..+|++ ++.|||++++|+.. .++++|++++ +||+|++.|+ +|+++..+|+|+
T Consensus 198 m~~~r~fE~fl~~~f~~~Krf----~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v~G~~~~~ifaEf 273 (924)
T PRK09404 198 LTAAEGFERFLHTKFVGQKRF----SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNVLGKPPRDLFAEF 273 (924)
T ss_pred HHHHHHHHHHHHHHhccCCcc----cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHhcCCCHHHHHHHH
Confidence 789999999999999999997 46999999999988 4558899998 6999999999 599999999999
Q ss_pred hCCC--CC-----CCc----------CCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEE
Q 019523 72 FGKA--TG-----CCR----------GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLA 134 (339)
Q Consensus 72 ~~~~--~~-----~~~----------g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~ 134 (339)
+++. ++ .++ +++|++|+... ...+++|...|+|+|+|+|.|+++... ......++||
T Consensus 274 ~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~-----~npShleav~Pva~G~A~A~q~~~~~~-~~~~~~v~v~ 347 (924)
T PRK09404 274 EGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLA-----FNPSHLEIVNPVVEGSVRARQDRRGDG-QDRKKVLPIL 347 (924)
T ss_pred cCCCCCCCCCCCCCcccccCccccccCCCCeeEeecc-----CCccccccccCeehhHHHHHHHhcCCc-ccccceEEEE
Confidence 9986 22 222 33445555332 245889999999999999998874200 0111268999
Q ss_pred EeCCCCc-ccchHHHHHHHHHhCCCC---EEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHH
Q 019523 135 FFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 210 (339)
Q Consensus 135 ~~GDG~~-~~g~~~eal~~A~~~~Lp---vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~ 210 (339)
++|||++ ++|.|+|+||+|+.|+|| +||||+||+|+++|+...+++..+++++|++||+|+++|||+|+++|++++
T Consensus 348 ~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~ 427 (924)
T PRK09404 348 IHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFAT 427 (924)
T ss_pred EecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHHHHHHHH
Confidence 9999998 699999999999999998 999999999999999888888889999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCEEEEEEEeeCCCCCCCCCCCCCCHHHHHHHhh-CChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHH
Q 019523 211 KEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAA-RDPITALKKYLIESSLASEAELKAIEKKIDEVVE 289 (339)
Q Consensus 211 ~~A~~~ar~~~gP~lIev~t~r~~gh~~~D~~~yr~~~e~~~~~~-~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~ 289 (339)
+.|++++|+++||+|||+.|||.+||+++|++.||++.|++.|++ +||+.+|+++|++.|++|++++++|+++++++|+
T Consensus 428 ~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~ 507 (924)
T PRK09404 428 RLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALD 507 (924)
T ss_pred HHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999985 6999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCChhhhhhcccC
Q 019523 290 DAVEFADESAPPPRSQLLENVFA 312 (339)
Q Consensus 290 ~a~~~a~~~~~p~~~~~~~~v~~ 312 (339)
+++++|++. .+.+.+..+|.
T Consensus 508 ~a~~~A~~~---~~~~~~~~~~~ 527 (924)
T PRK09404 508 AGFEVVKEW---RPADWLAGDWS 527 (924)
T ss_pred HHHHHHHhc---Ccccccccccc
Confidence 999999976 35667777775
No 12
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=1.1e-46 Score=392.62 Aligned_cols=296 Identities=20% Similarity=0.248 Sum_probs=258.1
Q ss_pred chhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccC------CCCeeeeC-CCCcccccc--cCCCHHHHHHHhh
Q 019523 2 ILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------KEDSVVST-YRDHVHALS--KGVPARAVMSELF 72 (339)
Q Consensus 2 ~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~------~~D~i~~~-~R~~~~~l~--~g~~p~~~~~el~ 72 (339)
+.+-.||.++...|...|++|- .|-|++.+++-.+++ -.|+++++ ||++...|+ .|++++.+|+|+.
T Consensus 199 ~~ae~fE~fl~~kf~g~KRFsl----EG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~ 274 (929)
T TIGR00239 199 TAAEGFERFLGAKFPGAKRFSL----EGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFA 274 (929)
T ss_pred HHHHHHHHHHHHhCCCCceeec----ccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHHHHHhCCCHHHHHHHHc
Confidence 4566899999999999999864 999999998877764 46999887 999999999 9999999999999
Q ss_pred CCCCCC-CcCCCCc-ccccc-----------CCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCC
Q 019523 73 GKATGC-CRGQGGS-MHMFS-----------KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG 139 (339)
Q Consensus 73 ~~~~~~-~~g~~G~-~h~~~-----------~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG 139 (339)
++..+. +.|++.. +|+.. ....+.++.++++...|+|+|+++|.++++.. ...+.+.++||++|||
T Consensus 275 g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~-~~~~~~~v~v~~~GDg 353 (929)
T TIGR00239 275 GKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLND-SPESTKVLAILIHGDA 353 (929)
T ss_pred CCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCC-cccccceEEEEEeccc
Confidence 976653 3355555 78873 12346788899999999999999998887410 0112367899999999
Q ss_pred Cc-ccchHHHHHHHHHhCCCCE---EEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHH
Q 019523 140 TC-NNGQFFECLNMAALWKLPI---VFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIE 215 (339)
Q Consensus 140 ~~-~~g~~~eal~~A~~~~Lpv---i~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~ 215 (339)
++ ++|.|+|+||+|+.|+||+ ||||+||+|+++|+...+++.++++++|++||+|+++|||+|+++|+++++.|++
T Consensus 354 A~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave 433 (929)
T TIGR00239 354 AFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVE 433 (929)
T ss_pred cccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHH
Confidence 97 7999999999999999996 9999999999999877777788899999999999999999999999999999999
Q ss_pred HHHcCCCCEEEEEEEeeCCCCCCCCCCC-CCCHHHHHHHhh-CChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHH
Q 019523 216 RARRGEGPTLVECETYRFRGHSLADPDE-LRDPAEKARYAA-RDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVE 293 (339)
Q Consensus 216 ~ar~~~gP~lIev~t~r~~gh~~~D~~~-yr~~~e~~~~~~-~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~ 293 (339)
++|+++||+|||+.|||.+||+++|++. ||+ ++++.|++ +||+.+|+++|++.|++|++++++|+++++++|+++++
T Consensus 434 ~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~ 512 (929)
T TIGR00239 434 YRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADC 512 (929)
T ss_pred HHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887 665 78887774 79999999999999999999999999999999999999
Q ss_pred HhhhCCCCCh
Q 019523 294 FADESAPPPR 303 (339)
Q Consensus 294 ~a~~~~~p~~ 303 (339)
.+...+.|..
T Consensus 513 ~~~~~~~~~~ 522 (929)
T TIGR00239 513 VVPSWREMNT 522 (929)
T ss_pred hhhccCCccc
Confidence 9987665443
No 13
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=7.3e-47 Score=346.62 Aligned_cols=237 Identities=22% Similarity=0.313 Sum_probs=211.6
Q ss_pred HHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCC------CCeeeeC-CCCcccccc--cCCCHHHHHHHhhCCCC-
Q 019523 7 FEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------EDSVVST-YRDHVHALS--KGVPARAVMSELFGKAT- 76 (339)
Q Consensus 7 ~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~------~D~i~~~-~R~~~~~l~--~g~~p~~~~~el~~~~~- 76 (339)
||+++...|...|.++ +.|+|++++++..+|++ +|+++++ ||+|+..|+ +|++++++|.|+.++.+
T Consensus 1 ~e~f~~~~f~~~krfs----~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~ 76 (265)
T cd02016 1 FEQFLATKFPGQKRFG----LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEF 76 (265)
T ss_pred ChhhHHHhcCCCeEEE----ecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCC
Confidence 6889999988877753 69999999999999987 6999988 999999999 99999999999999876
Q ss_pred --CCCcCCCCccccccCC-----------CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCc-c
Q 019523 77 --GCCRGQGGSMHMFSKE-----------HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-N 142 (339)
Q Consensus 77 --~~~~g~~G~~h~~~~~-----------~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~-~ 142 (339)
+...++...+|+.... ..+.+..+++|.++|+|+|+|+|.|+++. .....+.++||++|||++ +
T Consensus 77 ~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~--~~~~~~~v~v~~~GDgA~~~ 154 (265)
T cd02016 77 PEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRG--DGERDKVLPILIHGDAAFAG 154 (265)
T ss_pred CCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcC--CccCCCeEEEEEecCccccC
Confidence 3344566688987553 34578889999999999999999998741 011146799999999996 5
Q ss_pred cchHHHHHHHHHhCCCC---EEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHc
Q 019523 143 NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR 219 (339)
Q Consensus 143 ~g~~~eal~~A~~~~Lp---vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~ 219 (339)
+|.|+|+||+|..|+|| +||||+||+|+++++...+++..+++++|++||+|+++|||+|+++|+++++.|++++|+
T Consensus 155 qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~ 234 (265)
T cd02016 155 QGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQK 234 (265)
T ss_pred CChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 999999999999999988888889999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeeCCCCCCCCCCCCCCHHH
Q 019523 220 GEGPTLVECETYRFRGHSLADPDELRDPAE 249 (339)
Q Consensus 220 ~~gP~lIev~t~r~~gh~~~D~~~yr~~~e 249 (339)
+++|+|||+.|||.+||+++|++.|++|..
T Consensus 235 g~gp~lIe~~tYR~~GHse~D~p~~t~p~m 264 (265)
T cd02016 235 FKKDVVIDLVCYRRHGHNELDEPSFTQPLM 264 (265)
T ss_pred cCCCEEEEEEEecCCCCCCcCCccccCCCc
Confidence 999999999999999999999999988753
No 14
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=2.1e-31 Score=272.40 Aligned_cols=290 Identities=20% Similarity=0.246 Sum_probs=244.3
Q ss_pred hHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCC----C-C--eeeeCCCCcccccc--cCCCHHHHHHHhhCC
Q 019523 4 GRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK----E-D--SVVSTYRDHVHALS--KGVPARAVMSELFGK 74 (339)
Q Consensus 4 ~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~----~-D--~i~~~~R~~~~~l~--~g~~p~~~~~el~~~ 74 (339)
+-.||.++...|--.|++. -.|-|.+.+.+..+|.. + | .|-+.||++...|+ .|.+..+||+|+-|.
T Consensus 505 aEaFEtFLqtkyvGqkRFs----lEG~Es~iplld~~~~~aa~~~l~evvigm~HRGRLNVLani~gK~y~qiF~EFegn 580 (1228)
T PRK12270 505 AEAFETFLQTKYVGQKRFS----LEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRLNVLANIVGKPYSQIFREFEGN 580 (1228)
T ss_pred HHHHHHHHhhhcccceeee----ecchhhHHHHHHHHHHHHHhcCCceEEecccccchHHHHHHHhcCCHHHHHHHhcCC
Confidence 4579999999998888863 48999988877777642 1 3 35678999999998 589999999999998
Q ss_pred CCCCCcCCCC--ccccccCC-----------CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCc
Q 019523 75 ATGCCRGQGG--SMHMFSKE-----------HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC 141 (339)
Q Consensus 75 ~~~~~~g~~G--~~h~~~~~-----------~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~ 141 (339)
.+.....-.| .+|+.... .....+.++|-.--|+.-|+..|.+..-.. ...+-....|++.||++|
T Consensus 581 ~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleGivRakQd~l~~-g~~~~~vlpi~~hGdaaf 659 (1228)
T PRK12270 581 LDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEGIVRAKQDRLDK-GEEGFTVLPILLHGDAAF 659 (1228)
T ss_pred CCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhhhhhhhhhhhcc-cccCCceeEEEEeccccc
Confidence 8653322222 35665331 123467789999999999999996654310 011234567999999997
Q ss_pred c-cchHHHHHHHHHhCCCC---EEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHH
Q 019523 142 N-NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERA 217 (339)
Q Consensus 142 ~-~g~~~eal~~A~~~~Lp---vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~a 217 (339)
. +|.+.|.||++..+++| +|+||.||+|+++|.....+++.+..++|+++++|+++|||+|+++|.++.+.|+++.
T Consensus 660 agQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr 739 (1228)
T PRK12270 660 AGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYR 739 (1228)
T ss_pred cCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHH
Confidence 6 99999999999999999 9999999999999998888888889999999999999999999999999999999999
Q ss_pred HcCCCCEEEEEEEeeCCCCCCCCCCCCCCHHHHHHHhhCChH-HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhh
Q 019523 218 RRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPI-TALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFAD 296 (339)
Q Consensus 218 r~~~gP~lIev~t~r~~gh~~~D~~~yr~~~e~~~~~~~dPl-~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~ 296 (339)
+++++|+|||+.|||.+||++.|++.+.+|..+..+.+++++ +.|.+.|+.+|.+|+||.+++.+++++++++++...+
T Consensus 740 ~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~r 819 (1228)
T PRK12270 740 QRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAEQALRDYQGQLERVFNEVR 819 (1228)
T ss_pred HHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888877765 8899999999999999999999999999999998877
Q ss_pred hC
Q 019523 297 ES 298 (339)
Q Consensus 297 ~~ 298 (339)
+.
T Consensus 820 e~ 821 (1228)
T PRK12270 820 EA 821 (1228)
T ss_pred hc
Confidence 64
No 15
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.98 E-value=3.9e-32 Score=277.13 Aligned_cols=208 Identities=23% Similarity=0.225 Sum_probs=174.7
Q ss_pred HHHHHHhcCcccccccCCCChHHHHHHHHHccC---CCCeee--eCCCCcccccccCCCHHHHHHHhhCCCCCCCcCCCC
Q 019523 10 MCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK---KEDSVV--STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGG 84 (339)
Q Consensus 10 ~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~---~~D~i~--~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~g~~G 84 (339)
|...++..++..|++|++.|+ +.++++.++. |.|+++ +.||+|++.|++|.++..++.++++..++.+.+.++
T Consensus 28 r~~~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~G~~~~~~~~~~~g~~~G~~~~~~s 105 (581)
T PRK12315 28 RTALLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHKMLTGRKEAFLDPDHYDDVTGYTNPEES 105 (581)
T ss_pred HHHHHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHHHHcCCccchhhHHHcCCCCCCCCCCCC
Confidence 334455678899999999999 5555666666 889999 999999999999999999999999999988776663
Q ss_pred ccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEE
Q 019523 85 SMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVV 164 (339)
Q Consensus 85 ~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv 164 (339)
.|.+ ...|+.|.++|+|+|+|+|.+++ +.+.+|||++|||++++|.+||+||+|+.|++|+|+||
T Consensus 106 -~~~~-------~~~g~~~~~ls~A~G~A~A~k~~-------~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii 170 (581)
T PRK12315 106 -EHDF-------FTVGHTSTSIALATGLAKARDLK-------GEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIV 170 (581)
T ss_pred -CCCC-------cCCCcHHHHHHHHHHHHHHHHhc-------CCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEE
Confidence 3332 24577889999999999998887 46789999999999999999999999999999999999
Q ss_pred EcCCeeeccccc---------ccccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC
Q 019523 165 ENNLWAIGMSHL---------RATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 234 (339)
Q Consensus 165 ~NN~~~i~~~~~---------~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~ 234 (339)
+||+|+++++.. ++....++..++++|||+++.| ||+|+.++++++++ +++.++|++|+++|+|++
T Consensus 171 ~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~----a~~~~gP~~i~~~T~kG~ 246 (581)
T PRK12315 171 NDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKE----VKDIDHPIVLHIHTLKGK 246 (581)
T ss_pred ECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHH----HHhCCCCEEEEEEeecCC
Confidence 999999987653 1223345667899999999998 99999998886554 566789999999999999
Q ss_pred CCCC
Q 019523 235 GHSL 238 (339)
Q Consensus 235 gh~~ 238 (339)
|.+.
T Consensus 247 G~~~ 250 (581)
T PRK12315 247 GYQP 250 (581)
T ss_pred CCCh
Confidence 9653
No 16
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.94 E-value=3.1e-26 Score=226.09 Aligned_cols=304 Identities=21% Similarity=0.280 Sum_probs=251.9
Q ss_pred chhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCC------CCee-eeCCCCcccccccC--CCHHHHHHHhh
Q 019523 2 ILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------EDSV-VSTYRDHVHALSKG--VPARAVMSELF 72 (339)
Q Consensus 2 ~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~------~D~i-~~~~R~~~~~l~~g--~~p~~~~~el~ 72 (339)
.++-.||+++...|..-|++|. .|.|.+..|+...++. ++.| .+.||++...|+.= .+.+.+|.++.
T Consensus 259 ~~st~FE~FLa~Kw~seKRFGL----EGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~NVvRKpl~qIfseF~ 334 (1017)
T KOG0450|consen 259 TRSTRFEEFLATKWPSEKRFGL----EGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLANVVRKPLEQIFSEFS 334 (1017)
T ss_pred HHhhHHHHHHhhhCCccccccc----cchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHHHHHHhhHHHHHHHhcc
Confidence 3556899999999999999986 8999999999888753 3444 46899999999854 57899999998
Q ss_pred CCCCC-CCcCCCCccccccC---C-----C----cccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCC
Q 019523 73 GKATG-CCRGQGGSMHMFSK---E-----H----NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG 139 (339)
Q Consensus 73 ~~~~~-~~~g~~G~~h~~~~---~-----~----~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG 139 (339)
+..+. .-.||. .+|+... . . ....+.++|...-|+.+|...|.++... +.++.+...|.+.||+
T Consensus 335 g~~~~DeGSGDV-KYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~--D~~~~k~m~ILiHGDa 411 (1017)
T KOG0450|consen 335 GLEAADEGSGDV-KYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTG--DEEGKKVMGILIHGDA 411 (1017)
T ss_pred CCCCCcCCCCce-eeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhcc--ccccceeEEEEEecch
Confidence 84432 222222 3555421 1 1 1346778999999999999999887541 1223455679999999
Q ss_pred Ccc-cchHHHHHHHHHhCCCC---EEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHH
Q 019523 140 TCN-NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIE 215 (339)
Q Consensus 140 ~~~-~g~~~eal~~A~~~~Lp---vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~ 215 (339)
+|. +|.++|.+.+...-+.- .|+||.||+.++.|.....+++|.+.++|++.++|.++|+++|+++|.-+++-|.+
T Consensus 412 aFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaDD~EAV~~vc~vAAe 491 (1017)
T KOG0450|consen 412 AFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAE 491 (1017)
T ss_pred hhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCCChHHHHHHHHHHHH
Confidence 998 99999999887655544 89999999988888888888899999999999999999999999999999999999
Q ss_pred HHHcCCCCEEEEEEEeeCCCCCCCCCCCCCCHHHHHHHhhCCh-HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHH
Q 019523 216 RARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDP-ITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEF 294 (339)
Q Consensus 216 ~ar~~~gP~lIev~t~r~~gh~~~D~~~yr~~~e~~~~~~~dP-l~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~ 294 (339)
+...++..++|+++|||..||++.|.+.+..|.+++.+++..| +..|.+.|+++|.++++++++..+++...++++++.
T Consensus 492 WR~tFh~DvVVDlVcyRR~GHNE~DeP~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~~~k~~~I~eeafe~ 571 (1017)
T KOG0450|consen 492 WRKTFHKDVVVDLVCYRRHGHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFER 571 (1017)
T ss_pred HHHHhccCeEEEEEEEeecCCCcccCccccchHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988755 599999999999999999999999999999999999
Q ss_pred hhhCCCCChhhhhhcccC
Q 019523 295 ADESAPPPRSQLLENVFA 312 (339)
Q Consensus 295 a~~~~~p~~~~~~~~v~~ 312 (339)
++....-...++++.-|.
T Consensus 572 sKd~~~~~~rdWL~spW~ 589 (1017)
T KOG0450|consen 572 SKDYKPLHIRDWLDSPWP 589 (1017)
T ss_pred hccccchhhhhhhcCCCc
Confidence 988755554666665554
No 17
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.94 E-value=8.1e-26 Score=218.80 Aligned_cols=297 Identities=21% Similarity=0.304 Sum_probs=237.7
Q ss_pred CchhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccC------CCCeee-eCCCCcccccc--cCCCHHHHHHHh
Q 019523 1 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------KEDSVV-STYRDHVHALS--KGVPARAVMSEL 71 (339)
Q Consensus 1 m~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~------~~D~i~-~~~R~~~~~l~--~g~~p~~~~~el 71 (339)
|+.+-.||.++...+.+=|+.| +.|-|.+.+=.-.+|+ -+|+|. ..||++...++ ..++|..+|+.+
T Consensus 166 mlksq~fD~FlatKFpTvKRYG----gEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt~Ll~fpP~~mFRK~ 241 (913)
T KOG0451|consen 166 MLKSQAFDNFLATKFPTVKRYG----GEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLLTALLNFPPAKMFRKL 241 (913)
T ss_pred HHhhhhHHHHHHhccchhhhhc----cccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHHHHHhcCCHHHHHHHh
Confidence 5566777787777777766655 4788887654444443 246664 57999998887 578999999999
Q ss_pred hCCCCCC----CcCCCCccccccC-C---------CcccccccccccchHHHHHHHHHHHHhhhhh--h-c--cCCCc--
Q 019523 72 FGKATGC----CRGQGGSMHMFSK-E---------HNLLGGFAFIGEGIPVATGAAFTSKYRREVL--K-E--ADCDH-- 130 (339)
Q Consensus 72 ~~~~~~~----~~g~~G~~h~~~~-~---------~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~--~-~--~~~~~-- 130 (339)
.|....+ ..||.-+ |+.+. + ..+.++.+++....|+|+|.+.+.+...... + + ..++.
T Consensus 242 ~G~sEFpE~~~A~gDVlS-Hl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~V 320 (913)
T KOG0451|consen 242 SGASEFPEDIEAMGDVLS-HLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHV 320 (913)
T ss_pred cCcccCchhhhHHHHHHH-HhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCce
Confidence 9986532 2344332 22211 1 1245778899999999999999866543221 1 1 11222
Q ss_pred EEEEEeCCCCcc-cchHHHHHHHHHhCCCC---EEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHH
Q 019523 131 VTLAFFGDGTCN-NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 206 (339)
Q Consensus 131 ~vv~~~GDG~~~-~g~~~eal~~A~~~~Lp---vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v 206 (339)
..|.+.||++|. +|.++|+++++-..... -+++|.||+.++.++..+.+++..+.++++++++++++|+|.||++|
T Consensus 321 lnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~pviHVNGD~PEev 400 (913)
T KOG0451|consen 321 LNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEV 400 (913)
T ss_pred EEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhCCCEEEeCCCCHHHH
Confidence 456788999988 99999999998654433 78999999999999988888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCCCCCCCCCHHHHHHHhhCChH-HHHHHHHHHcCcccHHHHHHHHHHHH
Q 019523 207 REVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPI-TALKKYLIESSLASEAELKAIEKKID 285 (339)
Q Consensus 207 ~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~D~~~yr~~~e~~~~~~~dPl-~~~~~~L~~~g~~~~~~~~~i~~~~~ 285 (339)
.++.+-|+++-|..++.++|++.|+|.+||++.|++.|.+|-.++..++|..+ ..|.++|++.|++|+++++++++++.
T Consensus 401 vraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~ftspvmyk~v~aReSvPdlya~~L~~eg~~tee~vkE~~~~y~ 480 (913)
T KOG0451|consen 401 VRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFTSPVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKEMRDEYM 480 (913)
T ss_pred HHHHHHHHHHHHHhhhhheeehHHHHHhccccccCccccChhHHHHHHhhhcccHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888 56799999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCC
Q 019523 286 EVVEDAVEFADESAPPP 302 (339)
Q Consensus 286 ~~v~~a~~~a~~~~~p~ 302 (339)
+.+.+-+..+....+|+
T Consensus 481 ~~Ln~eL~~~~~y~Pp~ 497 (913)
T KOG0451|consen 481 KYLNEELALAPAYQPPP 497 (913)
T ss_pred HHHHHHHhcCCccCCCc
Confidence 99999998887765554
No 18
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.92 E-value=1.3e-23 Score=215.48 Aligned_cols=301 Identities=20% Similarity=0.228 Sum_probs=243.8
Q ss_pred hHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCC------CCee-eeCCCCcccccc--cCCCHHHHHHHhhCC
Q 019523 4 GRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------EDSV-VSTYRDHVHALS--KGVPARAVMSELFGK 74 (339)
Q Consensus 4 ~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~------~D~i-~~~~R~~~~~l~--~g~~p~~~~~el~~~ 74 (339)
+-.||..+...|.-.|+++. .|-|+..+++-.+++. .+++ .+.||++...|. .|.+++.+|.|+.+.
T Consensus 187 ae~fE~fl~~kf~g~KRFsl----EG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNvL~nvlgKp~~~if~eF~g~ 262 (906)
T COG0567 187 AEGFERFLHTKFPGAKRFSL----EGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGK 262 (906)
T ss_pred HHHHHHHhhccCCCCccccc----cchhhHHHHHHHHHHHHHhcCcceEEecccccchHHHHHHHhCCCHHHHHHHhCCC
Confidence 44688888888888888754 8999999888777652 2444 578999999998 689999999999996
Q ss_pred CCC-CCcCCCCccccccC-C---------CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcc-
Q 019523 75 ATG-CCRGQGGSMHMFSK-E---------HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN- 142 (339)
Q Consensus 75 ~~~-~~~g~~G~~h~~~~-~---------~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~- 142 (339)
... ...||. .+|+... + .....+.++|-...|+..|.+.|.+.... ....+....|.+.||.++.
T Consensus 263 ~~~~~~sGDV-KYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~--d~~~~k~lpiliHGDAAfaG 339 (906)
T COG0567 263 SAEPDLSGDV-KYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLG--DTERDKVLPILIHGDAAFAG 339 (906)
T ss_pred CCCCCccccc-ccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhc--cCccceeEEEEEecChhcCC
Confidence 542 223443 3555422 1 12345778999999999999999765431 0111234567999999988
Q ss_pred cchHHHHHHHHHhCCCC---EEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHc
Q 019523 143 NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR 219 (339)
Q Consensus 143 ~g~~~eal~~A~~~~Lp---vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~ 219 (339)
+|.+.|.|++....+.. .++||.||+.+.+|.....++++...++|+.+++|+++|+|.||+++..+.+-|++++..
T Consensus 340 QGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DDPEAv~~a~~~A~e~R~~ 419 (906)
T COG0567 340 QGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNG 419 (906)
T ss_pred ccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhhccCCceeecccCCchhhhhhHHHHHHHHhh
Confidence 99999999999887775 899999999888887677778899999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeeCCCCCCCCCCCCCCHHHHHHHhhC-ChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhhC
Q 019523 220 GEGPTLVECETYRFRGHSLADPDELRDPAEKARYAAR-DPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADES 298 (339)
Q Consensus 220 ~~gP~lIev~t~r~~gh~~~D~~~yr~~~e~~~~~~~-dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~ 298 (339)
++++++|++.|||.+||++.|.+.+..+..++.++++ .+...|.+.|+++|++++++.+++.+++++.++.........
T Consensus 420 F~kDvvIDlvcYRr~GHNE~DePs~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~~~r~~L~~~~~~~~~~ 499 (906)
T COG0567 420 FKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELVNDYRDALDQGFEVVKEY 499 (906)
T ss_pred cCCCeeeecccCCCCCCCccccccccCHHHHHHHhcCCChhhhHHHHHHhhccccHHHHHHHHHHHHHHhhhhhhHHhHH
Confidence 9999999999999999999999999999999999876 466999999999999999999999999999999887665544
Q ss_pred CCCChhhhhhcccCCC
Q 019523 299 APPPRSQLLENVFADP 314 (339)
Q Consensus 299 ~~p~~~~~~~~v~~~~ 314 (339)
- ..+.+...|...
T Consensus 500 ~---~~~~~~~~~~~~ 512 (906)
T COG0567 500 K---EMDWLEGDWSGY 512 (906)
T ss_pred H---hhhccccccccc
Confidence 3 233344444433
No 19
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.90 E-value=2.7e-24 Score=192.23 Aligned_cols=159 Identities=19% Similarity=0.140 Sum_probs=121.8
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
+++|..++++|...+++ ++..+.|+..+|.. + +..++++|+||+++|+|+|+++| .|+
T Consensus 7 ~l~~~~~~~~l~~~l~~d~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la-----------~p~ 75 (202)
T cd02006 7 PIKPQRVYEEMNKAFGRDVRYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAA-----------DPD 75 (202)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhh-----------CCC
Confidence 47899999999988875 35567776544311 1 12356789999999999999999 789
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc------------c--------ccChhhhhhc
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR------------A--------TSDPQIYKKG 188 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~------------~--------~~~~d~~~~a 188 (339)
++|||++|||+|+|+ .++|.||++++||+++||.||+ |++....+. . ...+||.++|
T Consensus 76 ~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA 153 (202)
T cd02006 76 RQVVALSGDYDFQFM--IEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVA 153 (202)
T ss_pred CeEEEEEeChHhhcc--HHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHH
Confidence 999999999999999 8999999999999999999996 443211110 0 0147999999
Q ss_pred ccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC
Q 019523 189 PAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 234 (339)
Q Consensus 189 ~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~ 234 (339)
++||+++.+|+.. .++.+++++|++.+++.++|+|||+.+.+..
T Consensus 154 ~a~G~~~~~v~~~--~el~~al~~a~~~~~~~~~p~liev~i~~~~ 197 (202)
T cd02006 154 EGLGCKAIRVTKP--EELAAAFEQAKKLMAEHRVPVVVEAILERVT 197 (202)
T ss_pred HHCCCEEEEECCH--HHHHHHHHHHHHhcccCCCcEEEEEEecccc
Confidence 9999999999764 4776666666544334689999999986644
No 20
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.90 E-value=9e-22 Score=203.46 Aligned_cols=143 Identities=25% Similarity=0.333 Sum_probs=123.0
Q ss_pred CcccccccccccchHHHHHHHHHHHHhhhhhhcc---CCCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEEEEcCC
Q 019523 93 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL 168 (339)
Q Consensus 93 ~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~---~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~vv~NN~ 168 (339)
.++...+|++|++++.|+|+|+|.|++++.++.. ..+.+|+|++|||++++|.+||++++|+.++|| +++||+||+
T Consensus 103 ~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~ 182 (653)
T TIGR00232 103 AGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNR 182 (653)
T ss_pred CCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 3566788999999999999999999876544321 247789999999999999999999999999999 889999999
Q ss_pred eeecccccccccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEeeCCCCCCCC
Q 019523 169 WAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRG-EGPTLVECETYRFRGHSLAD 240 (339)
Q Consensus 169 ~~i~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~-~gP~lIev~t~r~~gh~~~D 240 (339)
|++++++.... ..++.+++++|||++++| ||+|+.++.+++ +.+++. ++|++|+++|+|++|.+..+
T Consensus 183 ~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~----~~a~~~~~~P~~I~~~T~~g~G~~~~e 251 (653)
T TIGR00232 183 ISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAI----EEAKASKDKPTLIEVTTTIGFGSPNKA 251 (653)
T ss_pred eeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHH----HHHHhCCCCCEEEEEEeeecccCcccC
Confidence 99999887765 578999999999999999 999999887654 455555 48999999999999987443
No 21
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.90 E-value=4.2e-23 Score=190.97 Aligned_cols=137 Identities=26% Similarity=0.360 Sum_probs=119.6
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEEEEcCCeeec
Q 019523 94 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIG 172 (339)
Q Consensus 94 ~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~vv~NN~~~i~ 172 (339)
++...+|+||+++|+|+|+|+|.+++ +++++|+|++|||++++|.++|+|++|++++|| +++|++||+|+++
T Consensus 99 g~~~~~GslG~gl~~avG~Ala~~~~-------~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~ 171 (255)
T cd02012 99 GVEVTTGSLGQGLSVAVGMALAEKLL-------GFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQID 171 (255)
T ss_pred CeeeCCcchhhHHHHHHHHHHHHHHh-------CCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCcccc
Confidence 45567799999999999999998876 578999999999999999999999999999998 8889999999987
Q ss_pred ccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCCC
Q 019523 173 MSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 240 (339)
Q Consensus 173 ~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~D 240 (339)
..........++.+++++|||+++.|+|+|+.++.++++++.+. .++|++|+++|.++.|++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~e 236 (255)
T cd02012 172 GPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS---KGKPTLIIAKTIKGKGVPFME 236 (255)
T ss_pred CcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc---CCCCEEEEEEeecccccCccC
Confidence 76655556789999999999999999999999988876655431 278999999999999998554
No 22
>PRK12754 transketolase; Reviewed
Probab=99.90 E-value=1.2e-22 Score=209.04 Aligned_cols=142 Identities=24% Similarity=0.281 Sum_probs=123.7
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhhhccC---CCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEEEEcCCe
Q 019523 94 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW 169 (339)
Q Consensus 94 ~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~---~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~vv~NN~~ 169 (339)
++...+|++|+|++.|+|+|+|.|++++.++..+ .+.+|+|++|||++++|.+||++++|+.++|| +|+||+||+|
T Consensus 108 gve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~ 187 (663)
T PRK12754 108 GVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI 187 (663)
T ss_pred CccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCC
Confidence 5667889999999999999999999876554433 36899999999999999999999999999999 8899999999
Q ss_pred eecccccccccChhhhhhcccCCCcEEE-ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCC
Q 019523 170 AIGMSHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 239 (339)
Q Consensus 170 ~i~~~~~~~~~~~d~~~~a~a~G~~~~~-Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~ 239 (339)
++++++.... ..++.+++++|||++++ |||+|++++.+++.+|.. ..++|++|+++|++++|.+..
T Consensus 188 ~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~---~~~~Pt~I~~~T~~g~G~~~~ 254 (663)
T PRK12754 188 SIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNK 254 (663)
T ss_pred ccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCcccc
Confidence 9999887665 57999999999999999 899999988776554432 258899999999999998753
No 23
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.90 E-value=5.9e-24 Score=189.25 Aligned_cols=158 Identities=22% Similarity=0.198 Sum_probs=120.7
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------CC--cccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~~--~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
+++|.+++.+|...+++ .+..+.|+...|.. +. ..++++++||+++|+|+|+++| .|+
T Consensus 3 ~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la-----------~p~ 71 (196)
T cd02013 3 PMHPRQVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAA-----------APD 71 (196)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHh-----------CCC
Confidence 47899999999988875 35567776443321 11 2356789999999999999999 789
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc----------cccChhhhhhcccCCCcEEEe
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----------ATSDPQIYKKGPAFGMPGFHV 198 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~----------~~~~~d~~~~a~a~G~~~~~V 198 (339)
++|||++|||+|+|+ .++|.||+++++|+++||.||+ |++....+. ....+||.++|++||+++++|
T Consensus 72 r~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 149 (196)
T cd02013 72 RPVVAIAGDGAWGMS--MMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFAKIAEACGAKGITV 149 (196)
T ss_pred CcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEE
Confidence 999999999999998 8999999999999998888775 544221111 113589999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC
Q 019523 199 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 234 (339)
Q Consensus 199 dg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~ 234 (339)
+. +.++.+++++|++.++ .++|+|||+.+.+..
T Consensus 150 ~~--~~el~~al~~a~~~~~-~~~p~liev~v~~~~ 182 (196)
T cd02013 150 DK--PEDVGPALQKAIAMMA-EGKTTVIEIVCDQEL 182 (196)
T ss_pred CC--HHHHHHHHHHHHhcCC-CCCeEEEEEEeCccc
Confidence 86 4477776666654332 588999999987544
No 24
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.90 E-value=3.7e-23 Score=183.83 Aligned_cols=124 Identities=23% Similarity=0.280 Sum_probs=108.0
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeeccc
Q 019523 95 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS 174 (339)
Q Consensus 95 ~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~ 174 (339)
+...+|++|+++|+|+|+|+|.|++ +.+++|+|++|||++++|.++|+|++|+.+++|+++||+||+|+++++
T Consensus 70 ~~~~~G~lG~gl~~A~G~Ala~k~~-------~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~ 142 (195)
T cd02007 70 DAFGTGHSSTSISAALGMAVARDLK-------GKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPN 142 (195)
T ss_pred ceECCCchhhhHHHHHHHHHHHHHh-------CCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCC
Confidence 3457899999999999999998877 467899999999999999999999999999999999999999998765
Q ss_pred ccccccChhhhhhcccCCCcEEE-ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCC
Q 019523 175 HLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 235 (339)
Q Consensus 175 ~~~~~~~~d~~~~a~a~G~~~~~-Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~g 235 (339)
+. +...+++++|+.... |||+|++++.++++ ++++.++|++|+++|.+++|
T Consensus 143 ~~------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~----~a~~~~~P~~I~~~T~kg~g 194 (195)
T cd02007 143 VG------TPGNLFEELGFRYIGPVDGHNIEALIKVLK----EVKDLKGPVLLHVVTKKGKG 194 (195)
T ss_pred CC------CHHHHHHhcCCCccceECCCCHHHHHHHHH----HHHhCCCCEEEEEEEecccC
Confidence 43 466778899999885 99999998877554 45567899999999999887
No 25
>PTZ00089 transketolase; Provisional
Probab=99.89 E-value=8e-22 Score=204.08 Aligned_cols=158 Identities=22% Similarity=0.225 Sum_probs=130.3
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhhhcc---CCCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEEEEcCCe
Q 019523 94 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW 169 (339)
Q Consensus 94 ~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~---~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~vv~NN~~ 169 (339)
++...+|++|++++.|+|+|+|.|+++..++.. ..+.+|+|++|||++++|.+||++++|+.++|| +|+||+||+|
T Consensus 110 gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~ 189 (661)
T PTZ00089 110 GVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKI 189 (661)
T ss_pred CcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCc
Confidence 345678999999999999999999876433222 226789999999999999999999999999998 8999999999
Q ss_pred eecccccccccChhhhhhcccCCCcEEEe-cCC-CHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCCCCC----C
Q 019523 170 AIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGM-DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD----E 243 (339)
Q Consensus 170 ~i~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~-d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~D~~----~ 243 (339)
+++.+...+ ...++.+++++|||+++.| ||+ |+.++++++++|.+. .++|++|+++|+|++||.+.++. .
T Consensus 190 ~i~~~~~~~-~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~~~H~~ 265 (661)
T PTZ00089 190 TIDGNTDLS-FTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTEKVHGA 265 (661)
T ss_pred ccccCcccc-cCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCCCccCC
Confidence 999887654 4578889999999999999 999 999998877665432 26899999999999998666653 3
Q ss_pred CCCHHHHHHHhh
Q 019523 244 LRDPAEKARYAA 255 (339)
Q Consensus 244 yr~~~e~~~~~~ 255 (339)
+.+.++++.+.+
T Consensus 266 ~~~~~~~~~~~~ 277 (661)
T PTZ00089 266 PLGDEDIAQVKE 277 (661)
T ss_pred CCCHHHHHHHHH
Confidence 566777776543
No 26
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.89 E-value=5e-23 Score=179.41 Aligned_cols=148 Identities=26% Similarity=0.316 Sum_probs=111.5
Q ss_pred HHHHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEE
Q 019523 64 ARAVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVT 132 (339)
Q Consensus 64 p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~v 132 (339)
|.+++++|...+++ ....+.|+...|.. + ...+++.|+||+++|+|+|+++| .++++|
T Consensus 1 p~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la-----------~~~~~v 69 (172)
T cd02004 1 PYRVLHELQEALPDDAIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALA-----------RPDKRV 69 (172)
T ss_pred CHHHHHHHHHHCCCCcEEEEcCchHHHHHHHHccccCCCcEecCCCCCcccchHHHHHHHHHh-----------CCCCeE
Confidence 45677777777664 24556564332211 1 22356789999999999999999 788999
Q ss_pred EEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcC-Ceeecccccc-----------cccChhhhhhcccCCCcEEEecC
Q 019523 133 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSHLR-----------ATSDPQIYKKGPAFGMPGFHVDG 200 (339)
Q Consensus 133 v~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~~-----------~~~~~d~~~~a~a~G~~~~~Vdg 200 (339)
||++|||+++++ .++|.+|++++||+++||.|| +|++....+. ....+|+.+++++||+++.+|++
T Consensus 70 v~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~ 147 (172)
T cd02004 70 VLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVTT 147 (172)
T ss_pred EEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEECC
Confidence 999999999998 899999999999988888777 5666442221 12467999999999999999985
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 019523 201 MDVLKVREVAKEAIERARRGEGPTLVECET 230 (339)
Q Consensus 201 ~d~~~v~~a~~~A~~~ar~~~gP~lIev~t 230 (339)
+.++.+ +++.+++.++|+|||+.+
T Consensus 148 --~~el~~----al~~a~~~~~p~liev~i 171 (172)
T cd02004 148 --PEELKP----ALKRALASGKPALINVII 171 (172)
T ss_pred --HHHHHH----HHHHHHHcCCCEEEEEEc
Confidence 456554 555566678999999976
No 27
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.89 E-value=4.8e-23 Score=181.82 Aligned_cols=152 Identities=25% Similarity=0.415 Sum_probs=115.7
Q ss_pred CCHHHHHHHhhCCCCCC--CcCCCCccccccC-------CCc--ccccccccccchHHHHHHHHHHHHhhhhhhccCCCc
Q 019523 62 VPARAVMSELFGKATGC--CRGQGGSMHMFSK-------EHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 130 (339)
Q Consensus 62 ~~p~~~~~el~~~~~~~--~~g~~G~~h~~~~-------~~~--~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~ 130 (339)
++|..++++|...+++. ...+.|+...|.. +.. .++++|+||+++|+|+|+++| .+++
T Consensus 1 ~~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la-----------~~~~ 69 (186)
T cd02015 1 IKPQEVIKELSELTPGDAIVTTDVGQHQMWAAQYYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVA-----------RPDK 69 (186)
T ss_pred CCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhchHHHHHHHHHh-----------CCCC
Confidence 46788888888887752 4566665433211 122 345679999999999999999 6889
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccc------c-----ccccChhhhhhcccCCCcEEEe
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH------L-----RATSDPQIYKKGPAFGMPGFHV 198 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~------~-----~~~~~~d~~~~a~a~G~~~~~V 198 (339)
+||+++|||+|+++ .++|.||+++++|+++||.||+ |++.... . .....+|+.++|++||+++++|
T Consensus 70 ~vv~i~GDG~f~~~--~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 147 (186)
T cd02015 70 TVICIDGDGSFQMN--IQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRV 147 (186)
T ss_pred eEEEEEcccHHhcc--HHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEe
Confidence 99999999999998 8999999999999999998886 3321110 0 0113579999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 199 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 199 dg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
++.+ ++ +++++++++.++|+|||+.+.+
T Consensus 148 ~~~~--el----~~al~~a~~~~~p~liev~~~~ 175 (186)
T cd02015 148 EKPE--EL----EAALKEALASDGPVLLDVLVDP 175 (186)
T ss_pred CCHH--HH----HHHHHHHHhCCCCEEEEEEeCC
Confidence 8743 44 5566666678999999999865
No 28
>PRK05899 transketolase; Reviewed
Probab=99.89 E-value=1.4e-21 Score=201.88 Aligned_cols=143 Identities=24% Similarity=0.312 Sum_probs=118.9
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhhhcc---CCCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEEEEcCCe
Q 019523 94 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW 169 (339)
Q Consensus 94 ~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~---~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~vv~NN~~ 169 (339)
.+...+|+||+++|.|+|+|+|.++++..+++. ..+++|+|++|||++++|.++|+|++|++++|| +++|++||+|
T Consensus 112 ~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~ 191 (624)
T PRK05899 112 GVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRI 191 (624)
T ss_pred CeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence 344568999999999999999988765322111 127899999999999999999999999999999 8899999999
Q ss_pred eecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCCCC
Q 019523 170 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP 241 (339)
Q Consensus 170 ~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~D~ 241 (339)
+++.+... ...+++.+++++|||++++|||+|+.++.+++++|. +.++|++|++.|+|++||+..+.
T Consensus 192 ~~~~~~~~-~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~----~~~~P~vI~v~t~kg~g~~~~e~ 258 (624)
T PRK05899 192 SIDGPTEG-WFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAK----ASTKPTLIIAKTIIGKGAPNKEG 258 (624)
T ss_pred cccccccc-cccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHH----hcCCCEEEEEEeEeccCCccccC
Confidence 99876553 346789999999999999999999998887665544 45789999999999999986653
No 29
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.88 E-value=1.9e-21 Score=181.78 Aligned_cols=233 Identities=17% Similarity=0.164 Sum_probs=172.0
Q ss_pred CCCCcccccccCCCHH-HHHHHhhCCCC------CCCcCCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhh
Q 019523 50 TYRDHVHALSKGVPAR-AVMSELFGKAT------GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREV 122 (339)
Q Consensus 50 ~~R~~~~~l~~g~~p~-~~~~el~~~~~------~~~~g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~ 122 (339)
.||+|+.+...|..+. +++.+..+... +++.+.+|.+|+.. +++.....++|.++++|.|+++|.+.++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~-- 89 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSP--LTVPVLHTAFAATAAVASGIEEALKARG-- 89 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCccc--ccccceeehhhChHHHHHHHHHHHHhhC--
Confidence 5899999999998877 88888776543 23334444444322 3567778899999999999999987763
Q ss_pred hhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccc-----------------cChhhh
Q 019523 123 LKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT-----------------SDPQIY 185 (339)
Q Consensus 123 ~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~-----------------~~~d~~ 185 (339)
.++..|++++|||++..+. +++|+.|+.+++|++|||.||++.++|..+... ...|+.
T Consensus 90 ----~~~~~Vva~~GDG~~~~~g-~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~ 164 (300)
T PRK11864 90 ----EKGVIVVGWAGDGGTADIG-FQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVP 164 (300)
T ss_pred ----CCCcEEEEEEccCcccccc-HHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHH
Confidence 2345677799999998766 599999999999999999999988877554321 235788
Q ss_pred hhcccCCCcEE-EecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCC----------------------CCC
Q 019523 186 KKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA----------------------DPD 242 (339)
Q Consensus 186 ~~a~a~G~~~~-~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~----------------------D~~ 242 (339)
+++.++|++++ +++..|+.++.+++++|+ +.+||++|++.++-..++-.. |+.
T Consensus 165 ~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~----~~~Gps~I~~~spC~~~~~~~~~~~~~~~k~Av~tg~wplye~~~g 240 (300)
T PRK11864 165 DIMAAHKVPYVATASIAYPEDFIRKLKKAK----EIRGFKFIHLLAPCPPGWRFDPDKTIEIARLAVETGVWPLFEYENG 240 (300)
T ss_pred HHHHHcCCCEEEEEeCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCCCcChHHHHHHHHHHHHcCCceEEEEECC
Confidence 89999999888 788889988877665555 578999999977655443211 111
Q ss_pred CCC----CHHHHHHHhhCChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhh
Q 019523 243 ELR----DPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFAD 296 (339)
Q Consensus 243 ~yr----~~~e~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~ 296 (339)
.++ ++. ...-+.+.|++.|-+..-++.+|.+|+++++++++++.++...+.++
T Consensus 241 ~~~~~~~~~~-~~~~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~vd~~~~~~~~~~~ 297 (300)
T PRK11864 241 KFKLNSPSKT-LLDKKKRKPVEEYLKLQGRFKHLTEEEIKGLQEEIDEMWEEIKKLAK 297 (300)
T ss_pred EEEEccCCcc-ccccccCCCHHHHHhhccchhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 010 00112346999999988999999999999999999999988766544
No 30
>PRK12753 transketolase; Reviewed
Probab=99.88 E-value=1.7e-21 Score=201.49 Aligned_cols=142 Identities=23% Similarity=0.258 Sum_probs=122.1
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhhhccC---CCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEEEEcCCe
Q 019523 94 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW 169 (339)
Q Consensus 94 ~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~---~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~vv~NN~~ 169 (339)
++...+|++|++++.|+|+|+|.|++++.++..+ .+.+|+|++|||++++|.+||++++|+.++|| +|+||+||++
T Consensus 108 gve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~ 187 (663)
T PRK12753 108 GVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGI 187 (663)
T ss_pred CcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence 5567889999999999999999998764332211 26799999999999999999999999999998 8999999999
Q ss_pred eecccccccccChhhhhhcccCCCcEEE-ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCC
Q 019523 170 AIGMSHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 239 (339)
Q Consensus 170 ~i~~~~~~~~~~~d~~~~a~a~G~~~~~-Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~ 239 (339)
+++.+..... ..++.+++++|||+++. |||+|+.++++++++|.+ ..++|++|+++|++++|++..
T Consensus 188 ~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~G~~~~ 254 (663)
T PRK12753 188 SIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGFGSPNK 254 (663)
T ss_pred cCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecCCCCcc
Confidence 9999877654 57899999999999994 999999999887766543 357899999999999999854
No 31
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.88 E-value=4.1e-22 Score=179.00 Aligned_cols=186 Identities=15% Similarity=0.164 Sum_probs=148.4
Q ss_pred CCChHHHHHHHHHccCC-CCeeeeCCCCcccccccCCCHHHHHHHhhCCCCCCCcCCCCccccccCCCcccccccccccc
Q 019523 27 YNGQEAVSTGFIKLLKK-EDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEG 105 (339)
Q Consensus 27 ~~G~Ea~~~~~~~~l~~-~D~i~~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~g~~G~~h~~~~~~~~~~~~g~lG~~ 105 (339)
+.||++.++.+...|+. .|++||.|+.+. .| ++++|+++. . ..| .++|......++...+|+||++
T Consensus 1 g~GHg~~~l~a~l~l~G~~~~~~p~~~~~~----~g--l~~lf~qfs--~---~gg--~psH~~~~tpGi~~~~G~LG~g 67 (227)
T cd02011 1 GPGHGGPAVLANLYLEGSYSEFYPEISQDE----EG--MRKLFKQFS--F---PGG--IPSHAAPETPGSIHEGGELGYS 67 (227)
T ss_pred CCChHHHHHHHHHHhcCCCccccccccccH----HH--HHHHHHhcC--C---CCC--CCCCCcccCCCeeecccchhhH
Confidence 36999999888888886 499999999765 22 256777762 1 111 4567655556777888999999
Q ss_pred hHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchH---HHHHHHHHhCCCC-EEEEEEcCCeeeccccccc-cc
Q 019523 106 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF---FECLNMAALWKLP-IVFVVENNLWAIGMSHLRA-TS 180 (339)
Q Consensus 106 ~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~---~eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~-~~ 180 (339)
++.|+|+++. +++.+|+|++|||++++|.+ |++..++..+++. |+.|++||+|.|++++... .+
T Consensus 68 Ls~A~G~a~d-----------~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~ 136 (227)
T cd02011 68 LSHAYGAVFD-----------NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARIS 136 (227)
T ss_pred HHHHHHhhhc-----------CCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccC
Confidence 9999999864 68899999999999999986 8888888888888 8889999999999998855 45
Q ss_pred ChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHH-----------cC---CCCE--EEEEEEeeCCCC
Q 019523 181 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERAR-----------RG---EGPT--LVECETYRFRGH 236 (339)
Q Consensus 181 ~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar-----------~~---~gP~--lIev~t~r~~gh 236 (339)
..++.+++++|||+.+.|||+|++++++++++|+++++ .. .+|. +|.++|++++.=
T Consensus 137 ~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~wp~~~~~~~kg~~~ 208 (227)
T cd02011 137 HEELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAIEEIKAIQKRAREGGDASRPRWPMIVLRTPKGWTG 208 (227)
T ss_pred chhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCEEEEeCCCCCCC
Confidence 67899999999999999999999999999999888664 11 2342 566888887743
No 32
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.88 E-value=6.1e-21 Score=182.77 Aligned_cols=141 Identities=23% Similarity=0.152 Sum_probs=120.7
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEEEEcCCeeec
Q 019523 94 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIG 172 (339)
Q Consensus 94 ~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~vv~NN~~~i~ 172 (339)
.+...+|++|+|++.|+|+|+|.|+..+.++..+.+.+|+|++|||++++|.+||++++|+.++|+ +|+||++|+++++
T Consensus 112 gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qid 191 (386)
T cd02017 112 FWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLD 191 (386)
T ss_pred CeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccC
Confidence 356688999999999999999999865554444567899999999999999999999999999996 9999999998888
Q ss_pred cccccc-ccChhhhhhcccCCCcEEEec----------------------------------------------------
Q 019523 173 MSHLRA-TSDPQIYKKGPAFGMPGFHVD---------------------------------------------------- 199 (339)
Q Consensus 173 ~~~~~~-~~~~d~~~~a~a~G~~~~~Vd---------------------------------------------------- 199 (339)
.++... ....++.+++++|||.++.|+
T Consensus 192 G~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~ 271 (386)
T cd02017 192 GPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELK 271 (386)
T ss_pred CcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence 776653 356799999999999999998
Q ss_pred -----------------CCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEeeCCCCCC
Q 019523 200 -----------------GMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSL 238 (339)
Q Consensus 200 -----------------g~d~~~v~~a~~~A~~~ar~-~~gP~lIev~t~r~~gh~~ 238 (339)
|+|+.++.+|+.+ ++. .++|++|.++|.+++|.+.
T Consensus 272 ~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~----a~~~~~kPt~Iia~TikG~G~~~ 324 (386)
T cd02017 272 ALVTDLSDEDLWALNRGGHDPRKVYAAYKK----AVEHKGKPTVILAKTIKGYGLGA 324 (386)
T ss_pred HHhhcccHHhhhhhccCCCCHHHHHHHHHH----HHhCCCCCeEEEEeCeecCCCCh
Confidence 9999988875544 433 4689999999999999873
No 33
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.88 E-value=4.9e-21 Score=168.37 Aligned_cols=130 Identities=26% Similarity=0.386 Sum_probs=113.6
Q ss_pred CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEEEEcCCeee
Q 019523 93 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAI 171 (339)
Q Consensus 93 ~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~vv~NN~~~i 171 (339)
.++..++|+||+|+++|+|+|++.|++ +.+..|++++|||.+.+|.+||++.+|++++|. +|.||+-|...+
T Consensus 112 pgve~stGSLGqGLsvavGmAlg~kl~-------~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~Ql 184 (243)
T COG3959 112 PGVEVSTGSLGQGLSVAVGMALGAKLK-------GSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQL 184 (243)
T ss_pred CceeecCCcccccchHHHHHHHHHhhc-------CCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCccc
Confidence 355667899999999999999999988 467899999999999999999999999999998 888888887788
Q ss_pred cccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEeeC
Q 019523 172 GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRF 233 (339)
Q Consensus 172 ~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~-~~gP~lIev~t~r~ 233 (339)
+..+..-.+..++.++++||||++++|||+|++++++ |++.++. .++|.+|.+.|.++
T Consensus 185 dG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~----a~~~~~~~~~rP~~IIa~Tvkg 243 (243)
T COG3959 185 DGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVE----ALEKAKGSKGRPTVIIAKTVKG 243 (243)
T ss_pred CCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHH----HHHhhhccCCCCeEEEEecccC
Confidence 8877777777899999999999999999999998877 4555555 33999999998753
No 34
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.4e-20 Score=187.17 Aligned_cols=140 Identities=23% Similarity=0.314 Sum_probs=122.7
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhhhccC---CCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEEEEcCCe
Q 019523 94 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW 169 (339)
Q Consensus 94 ~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~---~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~vv~NN~~ 169 (339)
++...+|+||+|++.|+|+|+|.+++.+.+++++ -|..++|++|||++++|..+|+..+|+.++|. +|++.++|++
T Consensus 110 GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~I 189 (663)
T COG0021 110 GVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDI 189 (663)
T ss_pred CeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCc
Confidence 4567889999999999999999999988876544 36799999999999999999999999999999 9999999998
Q ss_pred eecccccccccChhhhhhcccCCCcEE-EecCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEeeCCCCCC
Q 019523 170 AIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSL 238 (339)
Q Consensus 170 ~i~~~~~~~~~~~d~~~~a~a~G~~~~-~Vdg~d~~~v~~a~~~A~~~ar~-~~gP~lIev~t~r~~gh~~ 238 (339)
+|...+... .+.|..+|++||||.++ .+||+|++++.+|+ +.|++ .++|++|+|+|..++|-+.
T Consensus 190 siDG~~~~~-f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai----~~Ak~~~dkPtlI~~kTiIG~Gsp~ 255 (663)
T COG0021 190 SIDGDTSLS-FTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAI----EEAKASTDKPTLIIVKTIIGKGSPN 255 (663)
T ss_pred eeccCcccc-cchhHHHHHHhcCCeEEEecCCCCHHHHHHHH----HHHHhcCCCCeEEEEEeeeecCCCC
Confidence 888776655 47899999999999999 67999999887755 45555 7799999999999999877
No 35
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.87 E-value=5.4e-22 Score=173.62 Aligned_cols=149 Identities=24% Similarity=0.306 Sum_probs=113.2
Q ss_pred CCHHHHHHHhhCCCCC--CCcCCCCccccccC-------CC--cccccccccccchHHHHHHHHHHHHhhhhhhccCCCc
Q 019523 62 VPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 130 (339)
Q Consensus 62 ~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~~--~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~ 130 (339)
++|..++.+|...+++ .+..+.|+...|.. +. ..+++ |+||+++|+|+|+++| .+++
T Consensus 1 ~~~~~~~~~l~~~l~~~~~iv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala-----------~~~~ 68 (178)
T cd02002 1 LTPEYLAAALAAALPEDAIIVDEAVTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALA-----------NPDR 68 (178)
T ss_pred CCHHHHHHHHHhhCCCCeEEEecCCcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhc-----------CCCC
Confidence 3678888888887775 35566665443311 11 22445 9999999999999999 6788
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc-----------------cccChhhhhhcccCC
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR-----------------ATSDPQIYKKGPAFG 192 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~-----------------~~~~~d~~~~a~a~G 192 (339)
+|||++|||+|+++ .++|.+|+++++|+++||.||+ |++....+. ....+|+.+++++||
T Consensus 69 ~vv~i~GDG~f~~~--~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G 146 (178)
T cd02002 69 KVVAIIGDGSFMYT--IQALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFG 146 (178)
T ss_pred eEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHcC
Confidence 99999999999999 7899999999999999999995 665432111 113478999999999
Q ss_pred CcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 019523 193 MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 230 (339)
Q Consensus 193 ~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t 230 (339)
+++++|++ +.++.+ +++++.+.++|+|||+.+
T Consensus 147 ~~~~~v~~--~~el~~----al~~a~~~~~p~vi~v~v 178 (178)
T cd02002 147 VEAERVET--PEELDE----ALREALAEGGPALIEVVV 178 (178)
T ss_pred CceEEeCC--HHHHHH----HHHHHHhCCCCEEEEEEC
Confidence 99999987 446555 555555678999999964
No 36
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.87 E-value=3e-21 Score=183.97 Aligned_cols=142 Identities=25% Similarity=0.370 Sum_probs=113.2
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhhhcc---CCCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEEEEcCCe
Q 019523 94 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW 169 (339)
Q Consensus 94 ~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~---~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~vv~NN~~ 169 (339)
++...+|+||+|++.|+|+|+|.|++++.++.+ ..+.+|+|++|||++++|.++|++.+|+.++|+ +|+|+++|+.
T Consensus 105 gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~ 184 (332)
T PF00456_consen 105 GIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGI 184 (332)
T ss_dssp T-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESE
T ss_pred eeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCc
Confidence 455678999999999999999999887665432 346799999999999999999999999999999 9999999998
Q ss_pred eecccccccccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEeeCCCCCCCC
Q 019523 170 AIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRG-EGPTLVECETYRFRGHSLAD 240 (339)
Q Consensus 170 ~i~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~-~gP~lIev~t~r~~gh~~~D 240 (339)
.+...+... ...++.++.++|||.+++| ||+|+.++.+++..| +.. ++|++|.++|.+++|.+...
T Consensus 185 q~dg~~~~~-~~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a----~~~~~kP~~Ii~~TvkG~G~~~~e 252 (332)
T PF00456_consen 185 QIDGPTDIV-FSEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEA----KASKGKPTVIIARTVKGKGVPFME 252 (332)
T ss_dssp ETTEEGGGT-HHSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHH----HHSTSS-EEEEEEE-TTTTSTTTT
T ss_pred ccCCCcccc-cchHHHHHHHHhhhhhcccccCcHHHHHHHHHHHH----HhcCCCCceeecceEEecCchhhc
Confidence 887766543 3467899999999999998 999999888765544 443 78999999999999997654
No 37
>PLN02790 transketolase
Probab=99.87 E-value=5.6e-21 Score=197.59 Aligned_cols=141 Identities=26% Similarity=0.319 Sum_probs=119.3
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhhhccC---CCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEEEEcCCe
Q 019523 94 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW 169 (339)
Q Consensus 94 ~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~---~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~vv~NN~~ 169 (339)
++...+|++|++++.|+|+|+|.|+++++++..+ .+.+|+|++|||++++|.+||++++|+.++|| +|+||+||+|
T Consensus 99 gi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~ 178 (654)
T PLN02790 99 GIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHI 178 (654)
T ss_pred CccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCc
Confidence 5677889999999999999999997643221111 26799999999999999999999999999998 9999999999
Q ss_pred eecccccccccChhhhhhcccCCCcEEEecC--CCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEeeCCCCCCC
Q 019523 170 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDG--MDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSLA 239 (339)
Q Consensus 170 ~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg--~d~~~v~~a~~~A~~~ar~-~~gP~lIev~t~r~~gh~~~ 239 (339)
+|+.+...+ ...++.+++++|||+++.||| +|+.+++++++. +++ .++|++|+++|++++|.+..
T Consensus 179 ~i~~~~~~~-~~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~----a~~~~~~P~lI~~~T~kG~G~~~~ 246 (654)
T PLN02790 179 SIDGDTEIA-FTEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKE----AKAVTDKPTLIKVTTTIGYGSPNK 246 (654)
T ss_pred cccCCcccc-cchhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHH----HHhcCCCeEEEEEEEeecCCCccc
Confidence 999987754 356888999999999999988 899988775544 444 68999999999999998744
No 38
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.86 E-value=3.5e-22 Score=175.07 Aligned_cols=149 Identities=20% Similarity=0.312 Sum_probs=109.9
Q ss_pred HHHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEE
Q 019523 65 RAVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL 133 (339)
Q Consensus 65 ~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv 133 (339)
.+++.+|...+++ ....+.|+...|.. + +..++++|+||+++|.|+|+++| .++++||
T Consensus 2 ~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la-----------~~~~~vv 70 (177)
T cd02010 2 QRIVHDLRAVMGDDDIVLLDVGAHKIWMARYYRTYAPNTCLISNGLATMGVALPGAIGAKLV-----------YPDRKVV 70 (177)
T ss_pred HHHHHHHHHHCCCCcEEEecCcHHHHHHHHhCCcCCCCCEEeCCCChhhhhHHHHHHHHHHh-----------CCCCcEE
Confidence 4566666666554 24456554322211 1 22356889999999999999999 7889999
Q ss_pred EEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc---------ccccChhhhhhcccCCCcEEEecCCCH
Q 019523 134 AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL---------RATSDPQIYKKGPAFGMPGFHVDGMDV 203 (339)
Q Consensus 134 ~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~---------~~~~~~d~~~~a~a~G~~~~~Vdg~d~ 203 (339)
|++|||+|+++ .++|.+++++++|+++||.||+ |++....+ .....+|+.++|++||+++++|+. +
T Consensus 71 ~i~GDG~f~m~--~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~ 146 (177)
T cd02010 71 AVSGDGGFMMN--SQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRIES--A 146 (177)
T ss_pred EEEcchHHHhH--HHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEECC--H
Confidence 99999999998 8999999999999998888885 55421110 011357999999999999999975 4
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 204 LKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 204 ~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
+++.+ +++.+++.++|+|||+.+.+
T Consensus 147 ~el~~----al~~a~~~~~p~liev~~~~ 171 (177)
T cd02010 147 DDLLP----VLERALAADGVHVIDCPVDY 171 (177)
T ss_pred HHHHH----HHHHHHhCCCCEEEEEEecc
Confidence 46555 55555567899999999865
No 39
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.86 E-value=9.1e-22 Score=176.36 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=108.9
Q ss_pred HHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEE
Q 019523 66 AVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLA 134 (339)
Q Consensus 66 ~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~ 134 (339)
+++.+|...+++ ++..+.|+...|.. + +..+++.|+||+++|+|+|+++| .|+++|||
T Consensus 3 ~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la-----------~p~~~vv~ 71 (205)
T cd02003 3 EVLGALNEAIGDDDVVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLA-----------KPDREVYV 71 (205)
T ss_pred hHHHHHHHhCCCCCEEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHh-----------CCCCeEEE
Confidence 345555555543 34456665433321 1 12346789999999999999999 78999999
Q ss_pred EeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc-----------------------cccChhhhhhccc
Q 019523 135 FFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR-----------------------ATSDPQIYKKGPA 190 (339)
Q Consensus 135 ~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~-----------------------~~~~~d~~~~a~a 190 (339)
++|||+|+|+ .++|.||+++++|+++||.||+ |++-...+. ....+|+.++|++
T Consensus 72 i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a 149 (205)
T cd02003 72 LVGDGSYLML--HSEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARS 149 (205)
T ss_pred EEccchhhcc--HHHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHh
Confidence 9999999998 8899999999999888888775 543110000 0124799999999
Q ss_pred CCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC
Q 019523 191 FGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 234 (339)
Q Consensus 191 ~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~ 234 (339)
||+++++|+ ++.++.+ |++++.+.++|+|||+.+.+..
T Consensus 150 ~G~~~~~v~--~~~el~~----al~~a~~~~gp~lIeV~v~~~~ 187 (205)
T cd02003 150 LGARVEKVK--TIEELKA----ALAKAKASDRTTVIVIKTDPKS 187 (205)
T ss_pred CCCEEEEEC--CHHHHHH----HHHHHHhCCCCEEEEEEeeccc
Confidence 999999996 4556655 5555556789999999997643
No 40
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.86 E-value=5.5e-21 Score=167.56 Aligned_cols=159 Identities=23% Similarity=0.210 Sum_probs=118.8
Q ss_pred cccccCCCHHHHHHHhhCCCCC--CCcCCCCccccccCC-CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEE
Q 019523 56 HALSKGVPARAVMSELFGKATG--CCRGQGGSMHMFSKE-HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVT 132 (339)
Q Consensus 56 ~~l~~g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~~-~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~v 132 (339)
..+..|++-.-++++|...+++ ++..|.|.+.+|... ..+...+++||+++|+|+|+++| .++++|
T Consensus 4 ~~~c~gc~~~~~~~~l~~~l~~~~iv~~D~G~~~~~~~~~~~~~~~~g~mG~gl~~AiGa~la-----------~p~~~V 72 (178)
T cd02008 4 PGLCPGCPHRPSFYALRKAFKKDSIVSGDIGCYTLGALPPLNAIDTCTCMGASIGVAIGMAKA-----------SEDKKV 72 (178)
T ss_pred CCcCCCCCChHHHHHHHHHhcCCeEEecCcCcccccccCChhhccccccCccHHHHHhhHHhh-----------CCCCCE
Confidence 3445677777788888887764 356788876666542 23345689999999999999999 678999
Q ss_pred EEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc---------cccChhhhhhcccCCCcEEEe-cCC
Q 019523 133 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR---------ATSDPQIYKKGPAFGMPGFHV-DGM 201 (339)
Q Consensus 133 v~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~---------~~~~~d~~~~a~a~G~~~~~V-dg~ 201 (339)
|+++|||++++.. +++|.+|+++++|+++||.||+ |++....+. ....+|+.+++++||+++++| +..
T Consensus 73 v~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~ 151 (178)
T cd02008 73 VAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPY 151 (178)
T ss_pred EEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHHHHHCCCCEEEecCcc
Confidence 9999999998642 6999999999999988888885 443211110 012479999999999999999 556
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 019523 202 DVLKVREVAKEAIERARRGEGPTLVECET 230 (339)
Q Consensus 202 d~~~v~~a~~~A~~~ar~~~gP~lIev~t 230 (339)
|+.++.+ +++.+.+.++|+||+++.
T Consensus 152 ~l~~~~~----al~~a~~~~gp~lI~v~~ 176 (178)
T cd02008 152 DLKAIRE----ELKEALAVPGVSVIIAKR 176 (178)
T ss_pred CHHHHHH----HHHHHHhCCCCEEEEEeC
Confidence 6554444 455555678999999965
No 41
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.85 E-value=1.2e-20 Score=193.27 Aligned_cols=136 Identities=23% Similarity=0.233 Sum_probs=115.2
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecc
Q 019523 94 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM 173 (339)
Q Consensus 94 ~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~ 173 (339)
++...+|++|+++|+|+|+|+|.|+++ +++++|+|++|||++++|.++|+|++|+++++|+++|++||+|+++.
T Consensus 111 ~~~~~~G~lG~gl~~AvG~A~a~~~~~------~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~ 184 (580)
T PRK05444 111 YDTFGAGHSSTSISAALGMAKARDLKG------GEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISP 184 (580)
T ss_pred CeeECCChHHHHHHHHHHHHHHHHhhC------CCCCeEEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCC
Confidence 455678999999999999999988763 36789999999999999999999999999999999999999998877
Q ss_pred ccccc---ccChhhhhhcccCCCcEE-EecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCC
Q 019523 174 SHLRA---TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 239 (339)
Q Consensus 174 ~~~~~---~~~~d~~~~a~a~G~~~~-~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~ 239 (339)
+.... ....++.+++++|||+++ .|||+|+.++++++ +.+++.++|++|+++|.|++|.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al----~~a~~~~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 185 NVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETL----KNAKDLKGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred cchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHH----HHHHhCCCCEEEEEEecCCcCCChh
Confidence 65432 123456678999999999 58999999887755 4555668999999999999997644
No 42
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.85 E-value=2.8e-21 Score=169.38 Aligned_cols=152 Identities=24% Similarity=0.321 Sum_probs=115.1
Q ss_pred CCHHHHHHHhhCCCCCC--CcCCCCcccccc-----CC----CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCc
Q 019523 62 VPARAVMSELFGKATGC--CRGQGGSMHMFS-----KE----HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 130 (339)
Q Consensus 62 ~~p~~~~~el~~~~~~~--~~g~~G~~h~~~-----~~----~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~ 130 (339)
++|..++.+|...++.. ...+.|+...+. .. +..+++.|+||+++|+|+|+++| .+++
T Consensus 2 ~~~~~~~~~l~~~~~~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a-----------~~~~ 70 (178)
T cd02014 2 IHPERVAAELNKRAPDDAIFTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGAIAAKLA-----------YPDR 70 (178)
T ss_pred CCHHHHHHHHHhHCCCCeEEEEcCcHHHHHHHHhcccCCCCcEEcCCCCchhhhHHHHHHHHHHh-----------CCCC
Confidence 46788888888877652 445666433221 11 12356789999999999999999 6789
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc---------ccccChhhhhhcccCCCcEEEecC
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL---------RATSDPQIYKKGPAFGMPGFHVDG 200 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~---------~~~~~~d~~~~a~a~G~~~~~Vdg 200 (339)
+|||++|||+|+++ .++|.++.++++|+++||.||+ |++....+ .....+|+.+++++||+++++|+.
T Consensus 71 ~vv~i~GDG~f~~~--~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~ 148 (178)
T cd02014 71 QVIALSGDGGFAML--MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVED 148 (178)
T ss_pred cEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeCC
Confidence 99999999999999 7889999999999999999985 66532111 011357999999999999999985
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 201 MDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 201 ~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
. .++ +++++++++.++|+|||+.+.+
T Consensus 149 ~--~el----~~~l~~a~~~~~p~liev~~~~ 174 (178)
T cd02014 149 P--DEL----EAALDEALAADGPVVIDVVTDP 174 (178)
T ss_pred H--HHH----HHHHHHHHhCCCCEEEEEEeCC
Confidence 4 455 4466666677899999999864
No 43
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.85 E-value=2.7e-21 Score=196.07 Aligned_cols=150 Identities=26% Similarity=0.339 Sum_probs=123.9
Q ss_pred CHHHHHHHhhCCCCC--CCcCCCCccccccC---------CCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcE
Q 019523 63 PARAVMSELFGKATG--CCRGQGGSMHMFSK---------EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 131 (339)
Q Consensus 63 ~p~~~~~el~~~~~~--~~~g~~G~~h~~~~---------~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~ 131 (339)
.|..++..|...+++ ++..|.|++.+|.. .+.+++++|+||+++|+|||++++ .|++.
T Consensus 360 ~p~~v~~~l~~~~~~daiv~~d~G~~~~w~a~~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla-----------~P~r~ 428 (550)
T COG0028 360 KPQYVIKVLRELLPDDAIVVTDVGQHQMWAARYFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLA-----------APDRK 428 (550)
T ss_pred CHHHHHHHHHHhCCCCeEEEeCCcHHHHHHHHhcccCCCCcEEcCCCCccccchHHHHHHHHhh-----------CCCCc
Confidence 689999999988885 46788898777633 124578999999999999999999 78999
Q ss_pred EEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccc-------------cChhhhhhcccCCCcEEEe
Q 019523 132 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT-------------SDPQIYKKGPAFGMPGFHV 198 (339)
Q Consensus 132 vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~-------------~~~d~~~~a~a~G~~~~~V 198 (339)
|||++|||+|+|+ .++|.||+++++|+++||.||+ ++++..+.|. ..+ |.++|++||+++++|
T Consensus 429 Vv~i~GDG~F~m~--~qEL~Ta~r~~lpv~ivv~nN~-~~g~v~~~q~~~~~~~~~~~~~~~~~-f~klAea~G~~g~~v 504 (550)
T COG0028 429 VVAIAGDGGFMMN--GQELETAVRYGLPVKIVVLNNG-GYGMVRQWQELFYGGRYSGTDLGNPD-FVKLAEAYGAKGIRV 504 (550)
T ss_pred EEEEEcccHHhcc--HHHHHHHHHhCCCEEEEEEECC-ccccchHHHHHhcCCCcceeecCCcc-HHHHHHHcCCeeEEe
Confidence 9999999999999 9999999999999999999997 4554443321 122 999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeC
Q 019523 199 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 233 (339)
Q Consensus 199 dg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~ 233 (339)
+ ++.++. ++++++.+.++|+|||+.+.+.
T Consensus 505 ~--~~~el~----~al~~al~~~~p~lidv~id~~ 533 (550)
T COG0028 505 E--TPEELE----EALEEALASDGPVLIDVVVDPE 533 (550)
T ss_pred C--CHHHHH----HHHHHHHhCCCCEEEEEEecCc
Confidence 8 444554 4677777889999999999876
No 44
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.84 E-value=7.1e-20 Score=191.23 Aligned_cols=213 Identities=19% Similarity=0.180 Sum_probs=148.3
Q ss_pred cccccccCCCChH-HHHHHHHHccCC------CCeeeeCCCCccccc------ccC-CCHHHHHHHhhCCCCCCCcCCCC
Q 019523 19 KMFGFVHLYNGQE-AVSTGFIKLLKK------EDSVVSTYRDHVHAL------SKG-VPARAVMSELFGKATGCCRGQGG 84 (339)
Q Consensus 19 ~~~g~~~~~~G~E-a~~~~~~~~l~~------~D~i~~~~R~~~~~l------~~g-~~p~~~~~el~~~~~~~~~g~~G 84 (339)
++.|+..++.+-= -+.+.....|+. +|+|++. +|+..+ ..| ++.++ +..++....+ .+-.+
T Consensus 99 ~~gGH~gs~lS~a~i~~vLy~~~lr~~~~~~~rD~Vlsk--GHasp~lYA~l~l~G~l~~e~-L~~fRq~~~~--~gl~~ 173 (889)
T TIGR03186 99 ELGGHIASYASAADLFEVGFNHFFRAAGDASGGDLVYFQ--PHSAPGVYARAFLEGFLSDAQ-LAHYRQEIAG--PGLCS 173 (889)
T ss_pred CCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCCCCEEEEC--CchHHHHHHHHHHcCCCCHHH-HHHhcCCCCC--CCCCC
Confidence 3456554444332 222333445653 5777665 344322 256 34444 3444443211 11223
Q ss_pred ccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEE
Q 019523 85 SMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFV 163 (339)
Q Consensus 85 ~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~v 163 (339)
..|.+..+-.+...+|+||.|++.|+|+|++.|+..+++.....+.+|+|++|||.+++|.+||++.+|++++|+ +|+|
T Consensus 174 ~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~I 253 (889)
T TIGR03186 174 YPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFV 253 (889)
T ss_pred CCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEE
Confidence 334433222345578999999999999999999876432223457899999999999999999999999999998 9999
Q ss_pred EEcCCeeeccccccccc-ChhhhhhcccCCCcEEEe--------------------------------------------
Q 019523 164 VENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV-------------------------------------------- 198 (339)
Q Consensus 164 v~NN~~~i~~~~~~~~~-~~d~~~~a~a~G~~~~~V-------------------------------------------- 198 (339)
|++|...+..++..-.. ..++.++++++||.+++|
T Consensus 254 vD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ 333 (889)
T TIGR03186 254 INCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRAR 333 (889)
T ss_pred EeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHH
Confidence 99998888877664222 468999999999999999
Q ss_pred -------------------------cCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCC
Q 019523 199 -------------------------DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 239 (339)
Q Consensus 199 -------------------------dg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~ 239 (339)
+|+|+.+|++|++.|.+ ..++|++|.++|.+++|.+..
T Consensus 334 ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~---~~~~PTvIla~TvkG~G~~~~ 396 (889)
T TIGR03186 334 FFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVR---HEGRPTVILAKTMKGFGMGAI 396 (889)
T ss_pred hcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeecCCCCcc
Confidence 69999999987766653 246899999999999997543
No 45
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.84 E-value=8.1e-20 Score=188.85 Aligned_cols=141 Identities=23% Similarity=0.133 Sum_probs=120.1
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEEEEcCCeeec
Q 019523 94 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIG 172 (339)
Q Consensus 94 ~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~vv~NN~~~i~ 172 (339)
.+...+|+||.|++.|+|+|++.|+..+++..+..+++|+|++|||.+++|.+||++.+|++++|+ +|+||++|...+.
T Consensus 183 ~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlD 262 (885)
T TIGR00759 183 FWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLD 262 (885)
T ss_pred CEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Confidence 355678999999999999999999866554444677899999999999999999999999999998 9999999988888
Q ss_pred cccccccc-ChhhhhhcccCCCcEEEe-----------------------------------------------------
Q 019523 173 MSHLRATS-DPQIYKKGPAFGMPGFHV----------------------------------------------------- 198 (339)
Q Consensus 173 ~~~~~~~~-~~d~~~~a~a~G~~~~~V----------------------------------------------------- 198 (339)
.++..-.. ..++.++++++||.+++|
T Consensus 263 G~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~ 342 (885)
T TIGR00759 263 GPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELK 342 (885)
T ss_pred CccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence 77664323 468899999999999999
Q ss_pred ----------------cCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCC
Q 019523 199 ----------------DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 237 (339)
Q Consensus 199 ----------------dg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~ 237 (339)
+|+|+.+|++|+..|.+ ..++|++|.++|.+++|.+
T Consensus 343 ~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~---~~grPTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 343 ALVADMSDADIWALNRGGHDPRKVYAAYAAAQE---HKGQPTVILAKTIKGYGMG 394 (885)
T ss_pred HHhhccchhhhhhccCCCCCHHHHHHHHHHHHh---CCCCCEEEEEeeeecCCCC
Confidence 59999999987665543 2357999999999999987
No 46
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.84 E-value=2.4e-21 Score=167.25 Aligned_cols=118 Identities=29% Similarity=0.377 Sum_probs=96.7
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecc
Q 019523 94 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM 173 (339)
Q Consensus 94 ~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~ 173 (339)
....+.++||+++|.|+|++++ .++++|+|++|||+++++ +++|++|.++++|+++||.||++...+
T Consensus 40 ~~~~~~g~~G~~~~~a~Gaa~a-----------~~~~~vv~~~GDG~~~~~--~~~l~ta~~~~~~~~~iv~nN~~~~~~ 106 (168)
T cd00568 40 LTSTGFGAMGYGLPAAIGAALA-----------APDRPVVCIAGDGGFMMT--GQELATAVRYGLPVIVVVFNNGGYGTI 106 (168)
T ss_pred EeCCCchhhhhhHHHHHHHHHh-----------CCCCcEEEEEcCcHHhcc--HHHHHHHHHcCCCcEEEEEECCccHHH
Confidence 3466789999999999999999 678899999999999996 899999999999999999999744433
Q ss_pred ccc-----------ccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 019523 174 SHL-----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 230 (339)
Q Consensus 174 ~~~-----------~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t 230 (339)
... .....+|+.+++++||+++++|++ +.++ +++++++++.++|+|||++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l----~~a~~~a~~~~~p~~i~v~~ 168 (168)
T cd00568 107 RMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDL----EAALAEALAAGGPALIEVKT 168 (168)
T ss_pred HHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEECC--HHHH----HHHHHHHHhCCCCEEEEEEC
Confidence 222 222467899999999999999986 3354 45666666789999999975
No 47
>PRK06163 hypothetical protein; Provisional
Probab=99.84 E-value=1.4e-20 Score=167.88 Aligned_cols=166 Identities=17% Similarity=0.264 Sum_probs=119.6
Q ss_pred CCHHHHHHHhhCCCCC--CCcCCCCc--cccccC---CCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEE
Q 019523 62 VPARAVMSELFGKATG--CCRGQGGS--MHMFSK---EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLA 134 (339)
Q Consensus 62 ~~p~~~~~el~~~~~~--~~~g~~G~--~h~~~~---~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~ 134 (339)
++-.+++.++...+++ .+..|.|+ ..+|.. +.++. .+|+||+++|+|+|+++| .|+++|||
T Consensus 13 ~~~~~~i~~l~~~l~~~~~iv~D~G~~~~~~~~~~~~~~~~~-~~GsMG~glpaAiGaalA-----------~p~r~Vv~ 80 (202)
T PRK06163 13 MNRFDLTCRLVAKLKDEEAVIGGIGNTNFDLWAAGQRPQNFY-MLGSMGLAFPIALGVALA-----------QPKRRVIA 80 (202)
T ss_pred cCHHHHHHHHHHhcCCCCEEEECCCccHHHHHHhhcCCCCeE-eecccccHHHHHHHHHHh-----------CCCCeEEE
Confidence 4567888888887774 45567775 334433 12233 479999999999999999 78999999
Q ss_pred EeCCCCcccchHHHHHHHHHhC-CCCEEEEEEcCC-eeeccccc-ccccChhhhhhcccCCCc-EEEecCCCHHHHHHHH
Q 019523 135 FFGDGTCNNGQFFECLNMAALW-KLPIVFVVENNL-WAIGMSHL-RATSDPQIYKKGPAFGMP-GFHVDGMDVLKVREVA 210 (339)
Q Consensus 135 ~~GDG~~~~g~~~eal~~A~~~-~Lpvi~vv~NN~-~~i~~~~~-~~~~~~d~~~~a~a~G~~-~~~Vdg~d~~~v~~a~ 210 (339)
++|||+|+|. .++|.|++++ ++|+++||.||+ |++..... .....+||.++|++||++ +++|+. +.++..+
T Consensus 81 i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~G~~~~~~v~~--~~el~~a- 155 (202)
T PRK06163 81 LEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGAGLENSHWAAD--EAHFEAL- 155 (202)
T ss_pred EEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHCCCceEEEeCC--HHHHHHH-
Confidence 9999999998 8999999987 789999999995 55421111 112357999999999998 678864 4466554
Q ss_pred HHHHHHHHcCCCCEEEEEEEeeCCCCCCCCCCCCCCHHHHH
Q 019523 211 KEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKA 251 (339)
Q Consensus 211 ~~A~~~ar~~~gP~lIev~t~r~~gh~~~D~~~yr~~~e~~ 251 (339)
++.+.+.++|+|||+.+.+...- +...|++.|.+
T Consensus 156 ---l~~a~~~~~p~lIeV~i~~~~~~----~~~~~~~~~~~ 189 (202)
T PRK06163 156 ---VDQALSGPGPSFIAVRIDDKPGV----GTTERDPAQIR 189 (202)
T ss_pred ---HHHHHhCCCCEEEEEEecCCCCC----CCCCCCHHHHH
Confidence 45555678999999998754321 12236666654
No 48
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.84 E-value=4.1e-21 Score=197.20 Aligned_cols=156 Identities=19% Similarity=0.146 Sum_probs=120.7
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------CC--cccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~~--~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...++. .+..|.|+...|.. +. ..++++|+||+++|+|+|+++| .|+
T Consensus 368 ~l~p~~~~~~l~~~l~~d~ivv~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA-----------~pd 436 (588)
T TIGR01504 368 PVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTIPAALGVCAA-----------DPK 436 (588)
T ss_pred CcCHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHhccccCCCcEEeCCccccccchHhHHHhhhhh-----------CCC
Confidence 48899999999887774 35567776544321 12 2356789999999999999999 789
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccccc------------c----------cChhhhh
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRA------------T----------SDPQIYK 186 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~------------~----------~~~d~~~ 186 (339)
++||+++|||+|+|+ .++|.||+++++|+++||.||+ |++ ....| . .++||.+
T Consensus 437 r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~~yg~--i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 512 (588)
T TIGR01504 437 RNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNAYLGL--IRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVK 512 (588)
T ss_pred CcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHH--HHHHHHHhcccccceeeccccccccccCCCCCHHH
Confidence 999999999999999 8999999999999999998886 543 21110 0 1479999
Q ss_pred hcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeC
Q 019523 187 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 233 (339)
Q Consensus 187 ~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~ 233 (339)
+|++||+++.+|+.. .++.+++++|++...+.++|+||||.+.+.
T Consensus 513 lA~a~G~~~~~V~~~--~eL~~al~~a~~~~~~~~~p~lIeV~i~~~ 557 (588)
T TIGR01504 513 VAEGLGCKAIRVFKP--EEIAPAFEQAKALMAEHRVPVVVEVILERV 557 (588)
T ss_pred HHHHCCCEEEEECCH--HHHHHHHHHHHhhcccCCCcEEEEEEeccc
Confidence 999999999999764 477666666654433468999999998653
No 49
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.84 E-value=9.4e-21 Score=162.83 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=90.5
Q ss_pred ccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhC-CCCEEEEEEcCC-eeeccccc
Q 019523 99 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW-KLPIVFVVENNL-WAIGMSHL 176 (339)
Q Consensus 99 ~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~-~Lpvi~vv~NN~-~~i~~~~~ 176 (339)
+|+||+++|.|+|+++| .+ ++|||++|||+|+|. .++|.|+.++ ++|+++||.||+ |++.....
T Consensus 41 ~gsmG~~lp~AiGa~~a-----------~~-~~Vv~i~GDG~f~m~--~~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~ 106 (157)
T cd02001 41 LGSMGLAGSIGLGLALG-----------LS-RKVIVVDGDGSLLMN--PGVLLTAGEFTPLNLILVVLDNRAYGSTGGQP 106 (157)
T ss_pred ecchhhHHHHHHHHHhc-----------CC-CcEEEEECchHHHhc--ccHHHHHHHhcCCCEEEEEEeCccccccCCcC
Confidence 89999999999999998 44 789999999999988 7899999999 599998888885 55422111
Q ss_pred ccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 177 RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 177 ~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
.....+|+.++|++||+++++|+. +.++.++++ .+.+.++|++||+.+.+
T Consensus 107 ~~~~~~d~~~lA~a~G~~~~~v~~--~~el~~al~----~a~~~~gp~vi~v~i~~ 156 (157)
T cd02001 107 TPSSNVNLEAWAAACGYLVLSAPL--LGGLGSEFA----GLLATTGPTLLHAPIAP 156 (157)
T ss_pred CCCCCCCHHHHHHHCCCceEEcCC--HHHHHHHHH----HHHhCCCCEEEEEEecC
Confidence 111368999999999999999964 556666544 44557899999998853
No 50
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.84 E-value=1.1e-20 Score=166.51 Aligned_cols=151 Identities=18% Similarity=0.178 Sum_probs=110.3
Q ss_pred CCHHHHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCc
Q 019523 62 VPARAVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 130 (339)
Q Consensus 62 ~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~ 130 (339)
++|..+++.+...+++ ....+.|+.. +.. + ...++.+|+||+++|.|+|+++| .+++
T Consensus 2 l~~~~~~~~l~~~l~~~~iiv~d~g~~~-~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala-----------~~~~ 69 (183)
T cd02005 2 LTQARLWQQVQNFLKPNDILVAETGTSW-FGALDLKLPKGTRFISQPLWGSIGYSVPAALGAALA-----------APDR 69 (183)
T ss_pred CCHHHHHHHHHHhcCCCCEEEECCchHH-HhhhhccCCCCCEEEeccchhhHhhhHHHHHHHHHh-----------CCCC
Confidence 4677788888776654 3445555432 211 1 12346889999999999999999 6789
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcC-Ceeecccccc------cccChhhhhhcccCC----CcEEEec
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSHLR------ATSDPQIYKKGPAFG----MPGFHVD 199 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~~------~~~~~d~~~~a~a~G----~~~~~Vd 199 (339)
+|++++|||+|+++ .++|.|++++++|+++||.|| +|++....+. ....+|+.++|++|| +++++|+
T Consensus 70 ~vv~i~GDG~f~~~--~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~ 147 (183)
T cd02005 70 RVILLVGDGSFQMT--VQELSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVK 147 (183)
T ss_pred eEEEEECCchhhcc--HHHHHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEec
Confidence 99999999999997 788999999999977777766 5665321111 113579999999999 7899986
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEee
Q 019523 200 GMDVLKVREVAKEAIERARR-GEGPTLVECETYR 232 (339)
Q Consensus 200 g~d~~~v~~a~~~A~~~ar~-~~gP~lIev~t~r 232 (339)
. +.++.++ ++++++ .++|+|||+.+.+
T Consensus 148 ~--~~el~~a----l~~a~~~~~~p~liev~~~~ 175 (183)
T cd02005 148 T--EGELDEA----LKDALFNRDKLSLIEVILPK 175 (183)
T ss_pred C--HHHHHHH----HHHHHhcCCCcEEEEEEcCc
Confidence 4 5566554 445544 6899999999865
No 51
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.83 E-value=8.9e-20 Score=187.58 Aligned_cols=199 Identities=22% Similarity=0.279 Sum_probs=139.6
Q ss_pred cccccCCCChHHHHHHHHHccC-CCCeeee--CCCCcccccccCCCHHHHHHHhhCCCCCCCcCCCCccccccCCCcc-c
Q 019523 21 FGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNL-L 96 (339)
Q Consensus 21 ~g~~~~~~G~Ea~~~~~~~~l~-~~D~i~~--~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~g~~G~~h~~~~~~~~-~ 96 (339)
.|++.++.|-=-+.+++...++ +.|.++- .|...++.+..|. . +-+..++.. . +-.| |....+... .
T Consensus 37 ~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G~-~-~~l~~~r~~-g----~l~g--~p~~~e~~~d~ 107 (617)
T TIGR00204 37 GGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTGR-R-EKFSTLRQK-K----GLHG--FPKRSESEYDV 107 (617)
T ss_pred CCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhCc-H-HHhcchhhc-C----CcCC--CCcCCCCCCCc
Confidence 3666666676555566666676 4576543 3555555555664 1 112222111 1 1111 221111112 2
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeeccccc
Q 019523 97 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 176 (339)
Q Consensus 97 ~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~ 176 (339)
.+.|++|.++++|+|+|+|.|++ +.+.+|+|++|||++++|.+||+|+.|+.++||+|+||+||+|+++.+..
T Consensus 108 ~~~G~~g~~ls~a~G~A~a~~~~-------~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~ 180 (617)
T TIGR00204 108 FSAGHSSTSISAGLGIAVAAEKK-------GADRKTVCVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEMSISENVG 180 (617)
T ss_pred cCCCchHhHHHHHHHHHHHHHhh-------CCCCEEEEEECCcccccccHHHHHHHHHhcCCCEEEEEECCCcccCCCch
Confidence 46788999999999999999887 46789999999999999999999999999999999999999999987654
Q ss_pred cccc------------------------Ch---h-hhhh--------------cccCCCcEE-EecCCCHHHHHHHHHHH
Q 019523 177 RATS------------------------DP---Q-IYKK--------------GPAFGMPGF-HVDGMDVLKVREVAKEA 213 (339)
Q Consensus 177 ~~~~------------------------~~---d-~~~~--------------a~a~G~~~~-~Vdg~d~~~v~~a~~~A 213 (339)
.... .+ + +.++ ++++||.++ .|||+|+.++.+++
T Consensus 181 ~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al--- 257 (617)
T TIGR00204 181 ALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETL--- 257 (617)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHH---
Confidence 2110 00 1 3333 889999999 89999999988755
Q ss_pred HHHHHcCCCCEEEEEEEeeCCCCCCC
Q 019523 214 IERARRGEGPTLVECETYRFRGHSLA 239 (339)
Q Consensus 214 ~~~ar~~~gP~lIev~t~r~~gh~~~ 239 (339)
+.++..++|++|+++|.++.|.+..
T Consensus 258 -~~ak~~~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 258 -KNAKKLKGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred -HHHhcCCCCEEEEEEecCCCCCchh
Confidence 4566678899999999999997654
No 52
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.83 E-value=7.7e-20 Score=160.49 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=92.0
Q ss_pred ccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCC-CEEEEEEcC-Ceeeccccc
Q 019523 99 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENN-LWAIGMSHL 176 (339)
Q Consensus 99 ~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~L-pvi~vv~NN-~~~i~~~~~ 176 (339)
+|+||+++|.|+|+++| .+ ++|||++|||+++|+ .++|.++.++++ |+++||.|| +|++.....
T Consensus 41 ~g~mG~~lp~AiGaala-----------~~-~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~ 106 (179)
T cd03372 41 LGSMGLASSIGLGLALA-----------QP-RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQP 106 (179)
T ss_pred ccchhhHHHHHHHHHhc-----------CC-CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCC
Confidence 79999999999999999 45 789999999999988 789999999995 677776666 566543221
Q ss_pred ccc-cChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCC
Q 019523 177 RAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 235 (339)
Q Consensus 177 ~~~-~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~g 235 (339)
... ..+|+.++|++||+++.+|++ ++.++.+ |++.++ ++|+|||+.+.+..+
T Consensus 107 ~~~~~~~d~~~lA~a~G~~~~~v~~-~~~el~~----al~~a~--~gp~lIev~~~~~~~ 159 (179)
T cd03372 107 THAGKKTDLEAVAKACGLDNVATVA-SEEAFEK----AVEQAL--DGPSFIHVKIKPGNT 159 (179)
T ss_pred CCCCCCCCHHHHHHHcCCCeEEecC-CHHHHHH----HHHHhc--CCCEEEEEEEcCCCC
Confidence 111 367999999999999999986 5666655 555555 789999999976554
No 53
>PRK12474 hypothetical protein; Provisional
Probab=99.82 E-value=3.1e-20 Score=188.23 Aligned_cols=151 Identities=21% Similarity=0.250 Sum_probs=114.6
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------CC-cccccccccccchHHHHHHHHHHHHhhhhhhccCCCc
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EH-NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 130 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~~-~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~ 130 (339)
.++|..++.+|...+++ ++..++|+...|.. +. .+....|+||+++|+|+|+++| .|++
T Consensus 340 ~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~gsmG~glpaAiGa~lA-----------~p~r 408 (518)
T PRK12474 340 ALNSLGVAQLIAHRTPDQAIYADEALTSGLFFDMSYDRARPHTHLPLTGGSIGQGLPLAAGAAVA-----------APDR 408 (518)
T ss_pred CcCHHHHHHHHHHHCCCCeEEEECCCcCHHHHHHhhcccCCCCEEccCCCccCccHHHHHHHHHH-----------CCCC
Confidence 37889999999887774 35567776444321 11 2333449999999999999999 7899
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc---------c--------cccChhhhhhcccCC
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL---------R--------ATSDPQIYKKGPAFG 192 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~---------~--------~~~~~d~~~~a~a~G 192 (339)
+|||++|||+|+|+ .++|.||.+++||+++||.||+ |++-...+ . ..+++||.++|++||
T Consensus 409 ~vv~i~GDG~f~m~--~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G 486 (518)
T PRK12474 409 KVVCPQGDGGAAYT--MQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLG 486 (518)
T ss_pred cEEEEEcCchhcch--HHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHCC
Confidence 99999999999999 8999999999999999999996 55421000 0 011358999999999
Q ss_pred CcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 019523 193 MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 230 (339)
Q Consensus 193 ~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t 230 (339)
+++.+|+..+ ++.+ +++++++.++|+|||+.+
T Consensus 487 ~~~~rv~~~~--eL~~----al~~a~~~~~p~liev~~ 518 (518)
T PRK12474 487 VEASRATTAE--EFSA----QYAAAMAQRGPRLIEAMI 518 (518)
T ss_pred CeEEEeCCHH--HHHH----HHHHHHcCCCCEEEEEEC
Confidence 9999998654 6555 555556678999999964
No 54
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.82 E-value=1.8e-20 Score=193.47 Aligned_cols=152 Identities=22% Similarity=0.324 Sum_probs=119.4
Q ss_pred CCCHHHHHHHhhCCCCCC-CcCCCCccccccC------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcE
Q 019523 61 GVPARAVMSELFGKATGC-CRGQGGSMHMFSK------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 131 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~~-~~g~~G~~h~~~~------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~ 131 (339)
+++|..++.+|....++. ...|.|++..|.. + +..++++|+||+++|+|+|+++| .|+++
T Consensus 386 ~l~~~~v~~~l~~~~~d~i~~~D~G~~~~~~~~~~~~~p~~~~~s~~~g~mG~glpaAiGA~lA-----------~p~r~ 454 (616)
T PRK07418 386 EIYPQEVLLAVRDLAPDAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVKVA-----------LPDEE 454 (616)
T ss_pred CcCHHHHHHHHHhhCCCcEEEECChHHHHHHHHhhhcCCCeEEcCCCccccccHHHHHHHHHHh-----------CCCCc
Confidence 588999999999887753 4567776544432 1 22356789999999999999999 78999
Q ss_pred EEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeeccccccc--------------ccChhhhhhcccCCCcEEE
Q 019523 132 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA--------------TSDPQIYKKGPAFGMPGFH 197 (339)
Q Consensus 132 vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~--------------~~~~d~~~~a~a~G~~~~~ 197 (339)
||+++|||+|+|. .++|.||++++||+++||.||+ +++.....| ...+||.++|++||+++++
T Consensus 455 Vv~i~GDG~f~m~--~~eL~Ta~r~~lpvi~vV~NN~-~~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~ 531 (616)
T PRK07418 455 VICIAGDASFLMN--IQELGTLAQYGINVKTVIINNG-WQGMVRQWQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMV 531 (616)
T ss_pred EEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEECC-cchHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEE
Confidence 9999999999998 8999999999999999999996 333322111 0247999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 198 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 198 Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
|+..+ ++.+ |++.+.+.++|+||||.+.+
T Consensus 532 V~~~~--el~~----al~~a~~~~~p~lIeV~i~~ 560 (616)
T PRK07418 532 ISERD--QLKD----AIAEALAHDGPVLIDVHVRR 560 (616)
T ss_pred eCCHH--HHHH----HHHHHHhCCCCEEEEEEecC
Confidence 97544 6555 55555567899999999864
No 55
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.82 E-value=4.6e-20 Score=163.07 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=93.5
Q ss_pred ccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCC-CEEEEEEcCC-eeeccccc
Q 019523 99 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENNL-WAIGMSHL 176 (339)
Q Consensus 99 ~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~L-pvi~vv~NN~-~~i~~~~~ 176 (339)
+|+||+++|+|+|+++| .|+++|||++|||+|+|. .++|.+++++++ |+++||.||+ |++.....
T Consensus 47 ~g~mG~~lpaAiGaala-----------~p~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~ 113 (188)
T cd03371 47 VGSMGHASQIALGIALA-----------RPDRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSVGGQP 113 (188)
T ss_pred cCccccHHHHHHHHHHh-----------CCCCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhccCCcC
Confidence 38999999999999999 688999999999999987 789999999997 6888888885 54421111
Q ss_pred ccccChhhhhhcccCCCcE-EEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCC
Q 019523 177 RATSDPQIYKKGPAFGMPG-FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 235 (339)
Q Consensus 177 ~~~~~~d~~~~a~a~G~~~-~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~g 235 (339)
.....+|+.++|++||+++ .+|+ ++.++.+++ +.+.+.++|+|||+.+.+..+
T Consensus 114 ~~~~~~d~~~~A~a~G~~~~~~v~--~~~el~~al----~~a~~~~~p~lIev~~~~~~~ 167 (188)
T cd03371 114 TVSFDVSLPAIAKACGYRAVYEVP--SLEELVAAL----AKALAADGPAFIEVKVRPGSR 167 (188)
T ss_pred CCCCCCCHHHHHHHcCCceEEecC--CHHHHHHHH----HHHHhCCCCEEEEEEecCCCC
Confidence 1123579999999999997 5887 555666654 445566899999999977654
No 56
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.82 E-value=1.4e-20 Score=164.59 Aligned_cols=145 Identities=19% Similarity=0.112 Sum_probs=105.6
Q ss_pred HHHHHhhCCCCC--CCcCCCCccccc-----cC---CCc--ccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEE
Q 019523 66 AVMSELFGKATG--CCRGQGGSMHMF-----SK---EHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL 133 (339)
Q Consensus 66 ~~~~el~~~~~~--~~~g~~G~~h~~-----~~---~~~--~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv 133 (339)
.++.+|...++. .+..+.|+...| .. +.. ...+.+.||+++|.|+|+++| . +++||
T Consensus 5 ~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la-----------~-~~~Vv 72 (175)
T cd02009 5 ALARALPDHLPEGSQLFVGNSMPIRDLDLFALPSDKTVRVFANRGASGIDGTLSTALGIALA-----------T-DKPTV 72 (175)
T ss_pred HHHHHHHHhCCCCCeEEEECCHHHHHHHHccCccCCCceEEecCCccchhhHHHHHHHHHhc-----------C-CCCEE
Confidence 466667766663 344566643332 11 112 245678999999999999999 4 78899
Q ss_pred EEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc---------cc---cChhhhhhcccCCCcEEEecC
Q 019523 134 AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR---------AT---SDPQIYKKGPAFGMPGFHVDG 200 (339)
Q Consensus 134 ~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~---------~~---~~~d~~~~a~a~G~~~~~Vdg 200 (339)
|++|||+|+|+ .++|.||.++++|+++||.||+ |++-...+. .. ..+|+.++|++||+++++|+.
T Consensus 73 ~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~ 150 (175)
T cd02009 73 LLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVSS 150 (175)
T ss_pred EEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCchheeccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCCC
Confidence 99999999998 8999999999999998888885 543111000 00 257999999999999999974
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 019523 201 MDVLKVREVAKEAIERARRGEGPTLVECET 230 (339)
Q Consensus 201 ~d~~~v~~a~~~A~~~ar~~~gP~lIev~t 230 (339)
+.++.+ +++++++.++|+|||+.+
T Consensus 151 --~~el~~----al~~a~~~~~p~lIev~v 174 (175)
T cd02009 151 --LDELEQ----ALESALAQDGPHVIEVKT 174 (175)
T ss_pred --HHHHHH----HHHHHHhCCCCEEEEEeC
Confidence 456555 555555678999999976
No 57
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.82 E-value=1.9e-20 Score=192.62 Aligned_cols=152 Identities=19% Similarity=0.365 Sum_probs=118.1
Q ss_pred CCCHHHHHHHhhCCCC--C-CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCC
Q 019523 61 GVPARAVMSELFGKAT--G-CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADC 128 (339)
Q Consensus 61 g~~p~~~~~el~~~~~--~-~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~ 128 (339)
+++|..++.+|...++ + ++..+.|++..|.. + +..++++|+||+++|+|+|+++| .|
T Consensus 379 ~l~~~~~~~~l~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA-----------~p 447 (595)
T PRK09107 379 VIMPQYAIQRLYELTKGRDTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIA-----------HP 447 (595)
T ss_pred CcCHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHh-----------CC
Confidence 4789999999998875 3 24567776433321 1 22356779999999999999999 78
Q ss_pred CcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccc-----------c--ccChhhhhhcccCCCcE
Q 019523 129 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------A--TSDPQIYKKGPAFGMPG 195 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~-----------~--~~~~d~~~~a~a~G~~~ 195 (339)
+++||+++|||+|+|+ .++|.||++++||+++||.||+ +++..... . ...+||.++|++||+++
T Consensus 448 ~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvi~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~ 524 (595)
T PRK09107 448 DALVIDIAGDASIQMC--IQEMSTAVQYNLPVKIFILNNQ-YMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVG 524 (595)
T ss_pred CCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEeCC-ccHHHHHHHHHHhCCccccccCCCCCCHHHHHHHCCCeE
Confidence 9999999999999999 8999999999999999999996 33332210 0 12479999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 196 FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 196 ~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
++|+..+ ++.+ +++.+.+.++|+||||.+.+
T Consensus 525 ~~v~~~~--el~~----al~~a~~~~~p~lIeV~i~~ 555 (595)
T PRK09107 525 IRCEKPG--DLDD----AIQEMIDVDKPVIFDCRVAN 555 (595)
T ss_pred EEECCHH--HHHH----HHHHHHhCCCCEEEEEEecC
Confidence 9997654 6555 55555567899999999875
No 58
>PRK07586 hypothetical protein; Validated
Probab=99.82 E-value=2.9e-20 Score=188.23 Aligned_cols=151 Identities=23% Similarity=0.212 Sum_probs=114.0
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------C-CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCc
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------E-HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 130 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~-~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~ 130 (339)
.++|..++.+|...+++ ++..++|++.+|.. + ..+.+..|+||+++|+|+|+++| .|++
T Consensus 336 ~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~lA-----------~p~r 404 (514)
T PRK07586 336 ALTPEAIAQVIAALLPENAIVVDESITSGRGFFPATAGAAPHDWLTLTGGAIGQGLPLATGAAVA-----------CPDR 404 (514)
T ss_pred CcCHHHHHHHHHHhCCCCeEEEeCCCcCHHHHHHhccccCCCCEEccCCcccccHHHHHHHHHHh-----------CCCC
Confidence 37888899999888775 35567776544321 1 12333348999999999999999 7899
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc----------------c-cccChhhhhhcccCC
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----------------R-ATSDPQIYKKGPAFG 192 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~----------------~-~~~~~d~~~~a~a~G 192 (339)
+|||++|||+|+|+ .++|.||.+++||+++||.||+ |++-...+ . ....+||.++|++||
T Consensus 405 ~Vv~i~GDGsf~m~--~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G 482 (514)
T PRK07586 405 KVLALQGDGSAMYT--IQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMG 482 (514)
T ss_pred eEEEEEechHHHhH--HHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHCC
Confidence 99999999999998 8999999999999988888885 55421100 0 012469999999999
Q ss_pred CcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 019523 193 MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 230 (339)
Q Consensus 193 ~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t 230 (339)
+++++|+.. .++.+ |++++++.++|+|||+.+
T Consensus 483 ~~~~~V~~~--~el~~----al~~a~~~~~p~liev~~ 514 (514)
T PRK07586 483 VPARRVTTA--EEFAD----ALAAALAEPGPHLIEAVV 514 (514)
T ss_pred CcEEEeCCH--HHHHH----HHHHHHcCCCCEEEEEEC
Confidence 999999754 35544 556666778999999963
No 59
>PRK06154 hypothetical protein; Provisional
Probab=99.82 E-value=3.9e-20 Score=189.16 Aligned_cols=156 Identities=18% Similarity=0.150 Sum_probs=118.6
Q ss_pred CCCHHHHHHHhhCCCC--CC-CcCCCCccccccC-------CCc--ccccccccccchHHHHHHHHHHHHhhhhhhccCC
Q 019523 61 GVPARAVMSELFGKAT--GC-CRGQGGSMHMFSK-------EHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADC 128 (339)
Q Consensus 61 g~~p~~~~~el~~~~~--~~-~~g~~G~~h~~~~-------~~~--~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~ 128 (339)
.++|..++.+|...++ +. +..|.|+.+.|.. +.. .++.+|+||+++|.|+|+++| .|
T Consensus 380 ~l~p~~~~~~l~~~l~~~d~iv~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-----------~p 448 (565)
T PRK06154 380 PINPYRVVWELQHAVDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLA-----------RP 448 (565)
T ss_pred CcCHHHHHHHHHHhcCCCCEEEEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHh-----------CC
Confidence 4889999999999875 32 4557786544311 122 345689999999999999999 78
Q ss_pred CcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc--------cccChhhhhhcccCCCcEEEec
Q 019523 129 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR--------ATSDPQIYKKGPAFGMPGFHVD 199 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~--------~~~~~d~~~~a~a~G~~~~~Vd 199 (339)
+++|||++|||+|+|+ .++|.||++++||+++||.||+ |++-...+. ...++||.++|++||+++++|+
T Consensus 449 ~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~ 526 (565)
T PRK06154 449 DALVINLWGDAAFGMT--GMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAIARALGGYGERVE 526 (565)
T ss_pred CCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcccccCCCCCHHHHHHHCCCeEEEEC
Confidence 9999999999999999 8999999999999999999996 543111100 0124699999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 200 GMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 200 g~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
.. .++.+++++|++.. +.++|+|||+.+.+
T Consensus 527 ~~--~el~~al~~a~~~~-~~~~p~lIev~v~~ 556 (565)
T PRK06154 527 DP--EMLVPALLRALRKV-KEGTPALLEVITSE 556 (565)
T ss_pred CH--HHHHHHHHHHHhhc-cCCCeEEEEEEeCh
Confidence 54 47766666655432 25789999998854
No 60
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.82 E-value=6.8e-20 Score=161.05 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=91.2
Q ss_pred ccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCC-CCEEEEEEcCC-eeeccccc
Q 019523 99 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWK-LPIVFVVENNL-WAIGMSHL 176 (339)
Q Consensus 99 ~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~-Lpvi~vv~NN~-~~i~~~~~ 176 (339)
+|+||+++|+|+|+++| . +++|||++|||+|+|+ .++|.++++++ +|+++||.||+ |++-....
T Consensus 41 ~gsmG~~lpaAiGa~la-----------~-~~~Vv~i~GDG~f~m~--~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~ 106 (181)
T TIGR03846 41 LGSMGLASSIGLGLALA-----------T-DRTVIVIDGDGSLLMN--LGVLPTIAAESPKNLILVILDNGAYGSTGNQP 106 (181)
T ss_pred ccccccHHHHHHHHHHc-----------C-CCcEEEEEcchHHHhh--hhHHHHHHHhCCCCeEEEEEeCCccccccCcC
Confidence 79999999999999999 6 7899999999999998 79999999999 59999998886 55432111
Q ss_pred ccc-cChhhhhhcccCCCcEEE-ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeC
Q 019523 177 RAT-SDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 233 (339)
Q Consensus 177 ~~~-~~~d~~~~a~a~G~~~~~-Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~ 233 (339)
... ..+|+.++|++||+++.+ |+. +.++.+ +++ +.+.++|+|||+.+.+.
T Consensus 107 ~~~~~~~d~~~lA~a~G~~~~~~v~~--~~~l~~----al~-a~~~~~p~li~v~~~~~ 158 (181)
T TIGR03846 107 TPASRRTDLELVAKAAGIRNVEKVAD--EEELRD----ALK-ALAMKGPTFIHVKVKPG 158 (181)
T ss_pred CCCCCCCCHHHHHHHCCCCeEEEeCC--HHHHHH----HHH-HHcCCCCEEEEEEeCCC
Confidence 111 357999999999999998 754 446555 454 55678999999998643
No 61
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.81 E-value=4.2e-20 Score=189.12 Aligned_cols=153 Identities=19% Similarity=0.319 Sum_probs=118.6
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...+++ ++..++|+...|.. + +..++++|+||+++|+|+|+++| .++
T Consensus 372 ~l~~~~~~~~l~~~l~~d~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA-----------~p~ 440 (570)
T PRK06725 372 ELKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLA-----------KEE 440 (570)
T ss_pred CcCHHHHHHHHHhhCCCCcEEEeCCcHHHHHHHHhccccCCCeEEccCCcccccchhhHHHhhHhh-----------cCC
Confidence 47899999999988764 35677776443321 1 22356779999999999999999 788
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc----------ccccChhhhhhcccCCCcEEEe
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----------RATSDPQIYKKGPAFGMPGFHV 198 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~----------~~~~~~d~~~~a~a~G~~~~~V 198 (339)
++|||++|||+|+|+ .++|.||.+++||+++||.||+ |++....+ ....++||.+++++||+++.+|
T Consensus 441 ~~vv~i~GDG~f~~~--~~el~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 518 (570)
T PRK06725 441 ELVICIAGDASFQMN--IQELQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRA 518 (570)
T ss_pred CeEEEEEecchhhcc--HHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEe
Confidence 999999999999988 8999999999999999999996 43311111 0113579999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 199 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 199 dg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
+ ++.++.+ +++++++.++|+|||+.+.+
T Consensus 519 ~--~~~~l~~----al~~a~~~~~p~liev~id~ 546 (570)
T PRK06725 519 T--NSTEAKQ----VMLEAFAHEGPVVVDFCVEE 546 (570)
T ss_pred C--CHHHHHH----HHHHHHhCCCCEEEEEEeCC
Confidence 6 4445544 56666667999999999865
No 62
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.81 E-value=2.8e-20 Score=191.31 Aligned_cols=158 Identities=20% Similarity=0.158 Sum_probs=119.9
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------CC--cccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~~--~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...+++ .+..+.|+...|.. +. ..++++|+||+++|.|+|+++| .++
T Consensus 369 ~l~~~~~~~~l~~~l~~d~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la-----------~p~ 437 (591)
T PRK11269 369 PIKPQRVYEEMNKAFGRDTCYVSTIGLSQIAAAQFLHVYKPRHWINCGQAGPLGWTIPAALGVRAA-----------DPD 437 (591)
T ss_pred CcCHHHHHHHHHHhcCCCcEEEECCcHHHHHHHHhcccCCCCcEEeCCccccccchhhhHHhhhhh-----------CCC
Confidence 47899999999887775 34566665443311 11 2356789999999999999999 788
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc----c----c------------cChhhhhhc
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----A----T------------SDPQIYKKG 188 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~----~----~------------~~~d~~~~a 188 (339)
++|||++|||+|+|. .++|.||.+++||+++||.||+ |++-...+. . . .++||.++|
T Consensus 438 r~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA 515 (591)
T PRK11269 438 RNVVALSGDYDFQFL--IEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVA 515 (591)
T ss_pred CcEEEEEccchhhcC--HHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCccceeeccccccccccCCCCCHHHHH
Confidence 999999999999998 8999999999999999999996 543111000 0 0 237999999
Q ss_pred ccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeC
Q 019523 189 PAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 233 (339)
Q Consensus 189 ~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~ 233 (339)
++||+++.+|+.. +++.+++++|++...+.++|+||||.+.+.
T Consensus 516 ~a~G~~~~~v~~~--~eL~~al~~a~~~~~~~~gp~lieV~v~~~ 558 (591)
T PRK11269 516 EGLGCKAIRVFKP--EDIAPALEQAKALMAEFRVPVVVEVILERV 558 (591)
T ss_pred HHCCCeEEEECCH--HHHHHHHHHHHhhcccCCCcEEEEEEeccc
Confidence 9999999999754 477676666654433478999999998653
No 63
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.81 E-value=3.8e-20 Score=189.62 Aligned_cols=152 Identities=23% Similarity=0.396 Sum_probs=117.3
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------CC--cccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~~--~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...+++ ++..+.|+...|.. +. ..++++|+||+++|+|+|+++| .|+
T Consensus 371 ~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~ 439 (572)
T PRK08979 371 RIKPQQVIETLYKLTNGDAYVASDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFA-----------MPD 439 (572)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCcccccchhhHHHhhhhh-----------CCC
Confidence 47899999999998764 34567776433321 12 2356789999999999999999 789
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeeccccccc-------------ccChhhhhhcccCCCcEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF 196 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~-------------~~~~d~~~~a~a~G~~~~ 196 (339)
++|||++|||+|+|+ .++|.||.+++||+++||.||+ +++...+.| ...+||.++|++||+++.
T Consensus 440 ~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~ 516 (572)
T PRK08979 440 ETVVCVTGDGSIQMN--IQELSTALQYDIPVKIINLNNR-FLGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGI 516 (572)
T ss_pred CeEEEEEcchHhhcc--HHHHHHHHHcCCCeEEEEEeCC-ccHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCCeEE
Confidence 999999999999999 8999999999999999999886 333322110 124799999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEee
Q 019523 197 HVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYR 232 (339)
Q Consensus 197 ~Vdg~d~~~v~~a~~~A~~~ar~-~~gP~lIev~t~r 232 (339)
+|+..+ ++.. |++++.+ .++|+||||.+.+
T Consensus 517 ~v~~~~--eL~~----al~~a~~~~~~p~lIev~i~~ 547 (572)
T PRK08979 517 RISDPD--ELES----GLEKALAMKDRLVFVDINVDE 547 (572)
T ss_pred EECCHH--HHHH----HHHHHHhcCCCcEEEEEEeCC
Confidence 998654 6555 5555544 3889999999875
No 64
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.81 E-value=9e-20 Score=161.94 Aligned_cols=138 Identities=20% Similarity=0.176 Sum_probs=100.4
Q ss_pred CCcCCCCccccccC-CCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCC-cccchHHHHHHHHHh
Q 019523 78 CCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT-CNNGQFFECLNMAAL 155 (339)
Q Consensus 78 ~~~g~~G~~h~~~~-~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~-~~~g~~~eal~~A~~ 155 (339)
....|.|... |.. ...+....++||+++|+|+|+++| .|+++||+++|||+ ++++ .++|.+|.+
T Consensus 29 ii~~D~G~~~-~~~~~~~~~~~~g~mG~glpaAiGa~la-----------~p~r~Vv~i~GDGs~f~m~--~~eL~ta~~ 94 (193)
T cd03375 29 VVVSGIGCSS-RLPYYFNTYGFHTLHGRALAVATGVKLA-----------NPDLTVIVVSGDGDLAAIG--GNHFIHAAR 94 (193)
T ss_pred EEEeCCChhc-eehhhccccchhhhhccHHHHHHHHHHh-----------CCCCeEEEEeccchHhhcc--HHHHHHHHH
Confidence 3556777633 332 233444458999999999999999 78999999999999 5788 899999999
Q ss_pred CCCCEEEEEEcCC-eeecccccc-c---------------ccChhhhhhcccCCCcEE-EecCCCHHHHHHHHHHHHHHH
Q 019523 156 WKLPIVFVVENNL-WAIGMSHLR-A---------------TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERA 217 (339)
Q Consensus 156 ~~Lpvi~vv~NN~-~~i~~~~~~-~---------------~~~~d~~~~a~a~G~~~~-~Vdg~d~~~v~~a~~~A~~~a 217 (339)
+++|+++||.||+ |++....+. . ...+|+.++++++|++++ ++.-.++.++.++++ ++
T Consensus 95 ~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~----~a 170 (193)
T cd03375 95 RNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIK----KA 170 (193)
T ss_pred hCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHH----HH
Confidence 9999999999986 444221110 0 013689999999999985 223345667666554 44
Q ss_pred HcCCCCEEEEEEEeeC
Q 019523 218 RRGEGPTLVECETYRF 233 (339)
Q Consensus 218 r~~~gP~lIev~t~r~ 233 (339)
.+.++|+|||+.+.-.
T Consensus 171 l~~~gp~vIev~~~C~ 186 (193)
T cd03375 171 IQHKGFSFVEVLSPCP 186 (193)
T ss_pred HhcCCCEEEEEECCCC
Confidence 4578999999976543
No 65
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.81 E-value=4.7e-20 Score=189.06 Aligned_cols=156 Identities=21% Similarity=0.342 Sum_probs=119.2
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...+++ ++..+.|+...|.. + +..++++|+||+++|+|+|+++| .|+
T Consensus 371 ~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la-----------~p~ 439 (574)
T PRK07979 371 KIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMA-----------LPE 439 (574)
T ss_pred CcCHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhhHHHHHHHHHHh-----------CCC
Confidence 48899999999988764 35567776433321 1 22356789999999999999999 789
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc---------cc--ccChhhhhhcccCCCcEEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL---------RA--TSDPQIYKKGPAFGMPGFH 197 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~---------~~--~~~~d~~~~a~a~G~~~~~ 197 (339)
++||+++|||+|+|+ .++|.||++++||+++||.||+ |++-...+ .. ...+||.++|++||+++++
T Consensus 440 ~~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~ 517 (574)
T PRK07979 440 ETVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQ 517 (574)
T ss_pred CeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCCEEEE
Confidence 999999999999999 8999999999999999999996 44311100 00 1347999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 198 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 198 Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
|+.. .++..+++++++.++ .++|+||||.+.+
T Consensus 518 v~~~--~eL~~al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 518 ISHP--DELESKLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred ECCH--HHHHHHHHHHHhccC-CCCcEEEEEEECC
Confidence 9754 477666666554322 3789999999975
No 66
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.81 E-value=5.9e-20 Score=187.02 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=119.1
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...+++ ....+.|+++.|.. + ...++++|+||+++|+|+|+++| .++
T Consensus 358 ~i~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la-----------~~~ 426 (539)
T TIGR02418 358 HLHPLEIIKAMQAIVTDDVTVTVDMGSHYIWMARYFRSYRARHLLISNGMQTLGVALPWAIGAALV-----------RPN 426 (539)
T ss_pred CcCHHHHHHHHHhhCCCCCEEEECCcHHHHHHHHhcccCCCCceecCCCccccccHHHHHHHHHHh-----------CCC
Confidence 47889999999888774 34567776544421 1 12456789999999999999999 688
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc---------cccChhhhhhcccCCCcEEEec
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR---------ATSDPQIYKKGPAFGMPGFHVD 199 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~---------~~~~~d~~~~a~a~G~~~~~Vd 199 (339)
++||+++|||+|+|. .++|.||++++||+++||.||+ |++-...+. ....+||.++|++||+++.+|+
T Consensus 427 ~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~ 504 (539)
T TIGR02418 427 TKVVSVSGDGGFLFS--SMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRVE 504 (539)
T ss_pred CcEEEEEcchhhhch--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEEC
Confidence 999999999999998 8999999999999998888885 543211000 1135799999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC
Q 019523 200 GMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 234 (339)
Q Consensus 200 g~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~ 234 (339)
..+ ++.+ +++++.+.++|+|||+.+.+..
T Consensus 505 ~~~--eL~~----al~~a~~~~~p~lIev~v~~~~ 533 (539)
T TIGR02418 505 SPD--QLEP----TLRQAMEVEGPVVVDIPVDYSD 533 (539)
T ss_pred CHH--HHHH----HHHHHHhCCCCEEEEEEecCcc
Confidence 654 5555 5555566789999999987543
No 67
>PRK05858 hypothetical protein; Provisional
Probab=99.81 E-value=6.1e-20 Score=187.01 Aligned_cols=153 Identities=22% Similarity=0.202 Sum_probs=118.8
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...+++ ++..+.|+...|.. + +..+++.|+||+++|+|+|+++| .|+
T Consensus 357 ~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la-----------~p~ 425 (542)
T PRK05858 357 PIHPMRVYGELAPLLDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYALAARLA-----------RPS 425 (542)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHHccccCCCCEEeCCCccccccchhHHHHHHHh-----------CCC
Confidence 47899999999998875 35667776443321 1 12345689999999999999999 789
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccc------------cccChhhhhhcccCCCcEEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR------------ATSDPQIYKKGPAFGMPGFH 197 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~------------~~~~~d~~~~a~a~G~~~~~ 197 (339)
++|||++|||+|+|+ .++|.||++++||+++||.||+ +++..... ...++||.++|++||+++.+
T Consensus 426 r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~-~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~ 502 (542)
T PRK05858 426 RQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNG-IWGLEKHPMEALYGYDVAADLRPGTRYDEVVRALGGHGEL 502 (542)
T ss_pred CcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCC-chhhHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEE
Confidence 999999999999999 8999999999999999999885 33332211 11467999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeC
Q 019523 198 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 233 (339)
Q Consensus 198 Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~ 233 (339)
|+..+ ++.+ +++++.+.++|+|||+.+.+.
T Consensus 503 v~~~~--eL~~----al~~a~~~~~p~lIev~~~~~ 532 (542)
T PRK05858 503 VTVPA--ELGP----ALERAFASGVPYLVNVLTDPS 532 (542)
T ss_pred eCCHH--HHHH----HHHHHHhCCCcEEEEEEECCC
Confidence 98654 6555 555555678999999999654
No 68
>PRK07524 hypothetical protein; Provisional
Probab=99.81 E-value=4.6e-20 Score=187.62 Aligned_cols=155 Identities=21% Similarity=0.263 Sum_probs=118.6
Q ss_pred CCHHHHHHHhhCCCCCC-CcCCCCccccc-----cC--CC--cc-cccccccccchHHHHHHHHHHHHhhhhhhccCCCc
Q 019523 62 VPARAVMSELFGKATGC-CRGQGGSMHMF-----SK--EH--NL-LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 130 (339)
Q Consensus 62 ~~p~~~~~el~~~~~~~-~~g~~G~~h~~-----~~--~~--~~-~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~ 130 (339)
.++..++.+|...+++. ...+.|+..++ .. +. .. +++.|+||+++|+|+|+++| .|++
T Consensus 358 ~~~~~~~~~l~~~l~~~~i~~d~g~~~~~~~~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA-----------~p~~ 426 (535)
T PRK07524 358 AAQVALLDTILAALPDAIFVGDSTQPVYAGNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALG-----------APER 426 (535)
T ss_pred cCHHHHHHHHHHhCCCCEEEeCCcHHHHHHHHhcccCCCCceEeCCCCcccccchHHHHHHHHHh-----------CCCC
Confidence 45778888888877753 45677653332 11 11 22 56679999999999999999 7899
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcC-Ceeeccc---------ccccccChhhhhhcccCCCcEEEecC
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS---------HLRATSDPQIYKKGPAFGMPGFHVDG 200 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN-~~~i~~~---------~~~~~~~~d~~~~a~a~G~~~~~Vdg 200 (339)
+|||++|||+|+|+ .++|.||++++||+++||.|| +|++... .......+||.++|++||+++++|+
T Consensus 427 ~vv~i~GDG~f~~~--~~el~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~- 503 (535)
T PRK07524 427 PVVCLVGDGGLQFT--LPELASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPVGVDPYTPDFIALARAFGCAAERVA- 503 (535)
T ss_pred cEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCccccCCCCCCHHHHHHHCCCcEEEeC-
Confidence 99999999999988 889999999999999999998 4543211 0011245799999999999999997
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCC
Q 019523 201 MDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 235 (339)
Q Consensus 201 ~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~g 235 (339)
++.++.+ +++++++.++|+||||.++|.++
T Consensus 504 -~~~el~~----al~~a~~~~~p~liev~~~~~~~ 533 (535)
T PRK07524 504 -DLEQLQA----ALRAAFARPGPTLIEVDQACWFA 533 (535)
T ss_pred -CHHHHHH----HHHHHHhCCCCEEEEEECCcccc
Confidence 4456555 55566677999999999999876
No 69
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.81 E-value=4.1e-20 Score=189.97 Aligned_cols=159 Identities=19% Similarity=0.213 Sum_probs=120.3
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------CC--cccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~~--~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...+++ ++..+.|+...|.. +. ..++++|+||+++|+|+|+++| .|+
T Consensus 385 ~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la-----------~p~ 453 (588)
T PRK07525 385 YMHPRQALREIQKALPEDAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIA-----------CPD 453 (588)
T ss_pred CcCHHHHHHHHHHhCCCCcEEEECCcccHHHHHHhcccCCCCeEEccccccccccHHHHHHHHHHh-----------CCC
Confidence 48999999999998875 35567775433211 11 2345789999999999999999 788
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc----------cc-cChhhhhhcccCCCcEEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----------AT-SDPQIYKKGPAFGMPGFH 197 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~----------~~-~~~d~~~~a~a~G~~~~~ 197 (339)
++||+++|||+|+|+ .++|.||+++++|+++||.||+ |++....+. .. ..+||.++|++||+++++
T Consensus 454 r~vv~i~GDG~f~~~--~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~ 531 (588)
T PRK07525 454 RPVVGFAGDGAWGIS--MNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVV 531 (588)
T ss_pred CcEEEEEcCchHhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEE
Confidence 999999999999999 8999999999999999998885 543211000 01 246999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCC
Q 019523 198 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 235 (339)
Q Consensus 198 Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~g 235 (339)
|+. +.++..+++++++.. +.++|+||||.+.+..|
T Consensus 532 v~~--~~el~~al~~a~~~~-~~~~p~lIev~~~~~~~ 566 (588)
T PRK07525 532 VDT--QEELGPALKRAIDAQ-NEGKTTVIEIMCNQELG 566 (588)
T ss_pred ECC--HHHHHHHHHHHHhcC-CCCCcEEEEEEeccccC
Confidence 975 447777666665432 23689999999976553
No 70
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.81 E-value=5.8e-20 Score=188.57 Aligned_cols=158 Identities=22% Similarity=0.219 Sum_probs=120.3
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------CC--cccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~~--~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
+++|..++.+|...++. ++..+.|+.+.|.. +. ..++++|+||+++|+|+|+++| .|+
T Consensus 380 ~l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la-----------~p~ 448 (579)
T TIGR03457 380 WLHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIA-----------APD 448 (579)
T ss_pred CcCHHHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhh-----------CCC
Confidence 48899999999988874 35567776543321 11 2356779999999999999999 789
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc----------cc-cChhhhhhcccCCCcEEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----------AT-SDPQIYKKGPAFGMPGFH 197 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~----------~~-~~~d~~~~a~a~G~~~~~ 197 (339)
++|||++|||+|+|+ .++|.||++++||+++||.||+ |++-...+. .. ..+||.++|++||+++.+
T Consensus 449 ~~Vv~i~GDG~f~m~--~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~ 526 (579)
T TIGR03457 449 RPVVAYAGDGAWGMS--MNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGVV 526 (579)
T ss_pred CcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEE
Confidence 999999999999999 8999999999999999888886 543211000 01 225999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC
Q 019523 198 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 234 (339)
Q Consensus 198 Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~ 234 (339)
|+.. .++.+++++|++.. +.++|+||||.+.+..
T Consensus 527 v~~~--~el~~al~~a~~~~-~~~~p~lieV~v~~~~ 560 (579)
T TIGR03457 527 VDKP--EDVGPALKKAIAAQ-AEGKTTVIEIVCTREL 560 (579)
T ss_pred ECCH--HHHHHHHHHHHhhC-CCCCcEEEEEEeCCCc
Confidence 9754 47777666666432 2578999999997544
No 71
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.81 E-value=5.8e-20 Score=188.77 Aligned_cols=153 Identities=20% Similarity=0.339 Sum_probs=117.3
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...+++ +...+.|+...|.. + +..++++|+||+++|+|+|+++| .|+
T Consensus 387 ~i~~~~~~~~l~~~l~~d~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA-----------~p~ 455 (587)
T PRK06965 387 IIKPQYVVEKLWELTDGDAFVCSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMA-----------HPD 455 (587)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh-----------CCC
Confidence 47899999999988764 34567775433311 1 22357789999999999999999 788
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccc-----------c-c-cChhhhhhcccCCCcEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------A-T-SDPQIYKKGPAFGMPGF 196 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~-----------~-~-~~~d~~~~a~a~G~~~~ 196 (339)
++|||++|||+|+|+ .++|.||+++++|+++||.||+ +++..... . . ..+||.++|++||++++
T Consensus 456 r~Vv~i~GDGsf~m~--~~eL~Ta~r~~lpviivV~NN~-~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~ 532 (587)
T PRK06965 456 DDVVCITGEGSIQMC--IQELSTCLQYDTPVKIISLNNR-YLGMVRQWQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGM 532 (587)
T ss_pred CcEEEEEcchhhhcC--HHHHHHHHHcCCCeEEEEEECC-cchHHHHHHHHhcCCCccccCCCCCCCHHHHHHHCCCEEE
Confidence 999999999999999 8999999999999999999996 33322110 0 0 35799999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 197 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 197 ~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
+|+..+ ++.+++++|++ ..++|+||||.+.+
T Consensus 533 ~v~~~~--eL~~al~~a~~---~~~~p~lieV~i~~ 563 (587)
T PRK06965 533 RIEKTS--DVEPALREALR---LKDRTVFLDFQTDP 563 (587)
T ss_pred EECCHH--HHHHHHHHHHh---cCCCcEEEEEEecc
Confidence 997644 66665555443 13789999999864
No 72
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.80 E-value=4.6e-20 Score=157.66 Aligned_cols=116 Identities=30% Similarity=0.454 Sum_probs=95.8
Q ss_pred cccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccc
Q 019523 96 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 174 (339)
Q Consensus 96 ~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~ 174 (339)
+.+.++||+++|+|+|+++| .|+++||+++|||+|.+. .++|.++.++++|+++||.||+ |++...
T Consensus 24 ~~~~g~mG~~~~~aiGa~~a-----------~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~~~ 90 (153)
T PF02775_consen 24 SGGFGSMGYALPAAIGAALA-----------RPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMTGG 90 (153)
T ss_dssp STTTT-TTTHHHHHHHHHHH-----------STTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHHHH
T ss_pred CCCccccCCHHHhhhHHHhh-----------cCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEecc
Confidence 56889999999999999998 789999999999999998 8999999999999999999886 433221
Q ss_pred cc----------cc---ccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 019523 175 HL----------RA---TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 175 ~~----------~~---~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev 228 (339)
.+ .. ...+|+.+++++||+++.+|+..|++++.+++ +++.+.++|+||||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al----~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 91 QQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEAL----REALESGGPAVIEV 153 (153)
T ss_dssp HHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHH----HHHHHSSSEEEEEE
T ss_pred ccccCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHH----HHHHhCCCcEEEEc
Confidence 10 01 34679999999999999999988878876654 55557899999997
No 73
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.80 E-value=1.1e-19 Score=186.27 Aligned_cols=153 Identities=20% Similarity=0.298 Sum_probs=117.1
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...+++ ++..+.|+...|.. + +..++++|+||+++|+|+|+++| .|+
T Consensus 373 ~l~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la-----------~p~ 441 (574)
T PRK06466 373 IIKPQQVVETLYEVTNGDAYVTSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLA-----------FPD 441 (574)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHh-----------CCC
Confidence 47899999999988764 34567775433321 1 22457789999999999999999 789
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc---------cc--ccChhhhhhcccCCCcEEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL---------RA--TSDPQIYKKGPAFGMPGFH 197 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~---------~~--~~~~d~~~~a~a~G~~~~~ 197 (339)
++|||++|||+|+|. .++|.||.+++||+++||.||+ |++-...+ .. ...+||.++|++||+++.+
T Consensus 442 r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~ 519 (574)
T PRK06466 442 QDVACVTGEGSIQMN--IQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGIR 519 (574)
T ss_pred CeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCceeecCCCCCCCHHHHHHHCCCeEEE
Confidence 999999999999999 8999999999999999998885 54311100 00 1347999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEee
Q 019523 198 VDGMDVLKVREVAKEAIERARRG-EGPTLVECETYR 232 (339)
Q Consensus 198 Vdg~d~~~v~~a~~~A~~~ar~~-~gP~lIev~t~r 232 (339)
|+..+ ++.+++ +++.+. ++|+|||+.+.+
T Consensus 520 v~~~~--el~~al----~~a~~~~~~p~lIev~i~~ 549 (574)
T PRK06466 520 ITDLK--DLKPKL----EEAFAMKDRLVFIDIYVDR 549 (574)
T ss_pred ECCHH--HHHHHH----HHHHhcCCCcEEEEEEeCC
Confidence 97654 665544 444443 899999999975
No 74
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.80 E-value=7e-20 Score=186.45 Aligned_cols=152 Identities=14% Similarity=0.118 Sum_probs=116.8
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCc
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 130 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~ 130 (339)
.++|..++.+|...+++ .+..|.|+..++.. + ...++++|+||+++|+|+|+++| .|++
T Consensus 355 ~l~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~ 423 (539)
T TIGR03393 355 ALSQENFWQTLQTFLRPGDIILADQGTSAFGAADLRLPADVNFIVQPLWGSIGYTLPAAFGAQTA-----------CPNR 423 (539)
T ss_pred ccCHHHHHHHHHHhcCCCCEEEEccCchhhhhhhccCCCCCeEEechhhhhhhhHHHHHHHHHhc-----------CCCC
Confidence 38899999999988764 35567776432211 1 12356789999999999999999 7899
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc------ccccChhhhhhcccCCCc----EEEec
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL------RATSDPQIYKKGPAFGMP----GFHVD 199 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~------~~~~~~d~~~~a~a~G~~----~~~Vd 199 (339)
+|||++|||+|+|+ .++|.||+++++|+++||.||+ |++-...+ .....+||.+++++||++ +++|+
T Consensus 424 ~vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~ 501 (539)
T TIGR03393 424 RVILLIGDGSAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVS 501 (539)
T ss_pred CeEEEEcCcHHHhH--HHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEec
Confidence 99999999999999 8999999999999888888885 55421111 112457999999999996 88997
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 019523 200 GMDVLKVREVAKEAIERARRGEGPTLVECETY 231 (339)
Q Consensus 200 g~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~ 231 (339)
..+ ++.+ +++++.+.++|+|||+.+.
T Consensus 502 ~~~--el~~----al~~a~~~~~p~liev~i~ 527 (539)
T TIGR03393 502 EAE--QLAD----VLEKVAAHERLSLIEVVLP 527 (539)
T ss_pred cHH--HHHH----HHHHHhccCCeEEEEEEcC
Confidence 654 5544 5666667899999999875
No 75
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.80 E-value=1.2e-19 Score=186.17 Aligned_cols=153 Identities=20% Similarity=0.235 Sum_probs=117.5
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------CC--cccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~~--~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.++....++ .+..+.|+...|.. +. ..+++.|+||+++|.|+|+++| .++
T Consensus 358 ~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la-----------~p~ 426 (574)
T PRK09124 358 PIHPQYLARQISEFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAA-----------HPG 426 (574)
T ss_pred cCCHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHhcccCCCCeEEecCCcccccchHHHHHHHHHh-----------CCC
Confidence 37889999999887775 35567775443311 12 2346889999999999999999 789
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc---------ccccChhhhhhcccCCCcEEEec
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL---------RATSDPQIYKKGPAFGMPGFHVD 199 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~---------~~~~~~d~~~~a~a~G~~~~~Vd 199 (339)
++|||++|||||+|. .++|.||++++||+++||.||+ |++-...+ .....+||.++|++||+++++|+
T Consensus 427 r~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~ 504 (574)
T PRK09124 427 RQVVALSGDGGFSML--MGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRVE 504 (574)
T ss_pred CeEEEEecCcHHhcc--HHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC
Confidence 999999999999999 8999999999999988888885 55421100 01135799999999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 200 GMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 200 g~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
..+ ++.+ +++++.+.++|+||||.+.+
T Consensus 505 ~~~--eL~~----al~~a~~~~~p~lIev~i~~ 531 (574)
T PRK09124 505 KAS--ELDG----ALQRAFAHDGPALVDVVTAK 531 (574)
T ss_pred CHH--HHHH----HHHHHHhCCCCEEEEEEecC
Confidence 644 6555 55555567899999999864
No 76
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.80 E-value=9.4e-20 Score=186.36 Aligned_cols=153 Identities=22% Similarity=0.330 Sum_probs=116.9
Q ss_pred CCCHHHHHHHhhCCCCCC-CcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCc
Q 019523 61 GVPARAVMSELFGKATGC-CRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 130 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~~-~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~ 130 (339)
.++|..++.+|....++. +..+.|+...|.. + +..++++|+||+++|+|+|+++| .+++
T Consensus 365 ~l~~~~~~~~l~~~~p~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~ 433 (561)
T PRK06048 365 VIKPQYVIEQIYELCPDAIIVTEVGQHQMWAAQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVG-----------KPDK 433 (561)
T ss_pred CcCHHHHHHHHHhhCCCcEEEEcCcHHHHHHHHhcccCCCCeEEeCCCccccccHHHHHHHHHHh-----------CCCC
Confidence 378889999998877653 4566665433311 1 22356779999999999999999 6889
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccc------cc---c--ccChhhhhhcccCCCcEEEe
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH------LR---A--TSDPQIYKKGPAFGMPGFHV 198 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~------~~---~--~~~~d~~~~a~a~G~~~~~V 198 (339)
+|||++|||+|+|+ .++|.||+++++|+++||.||+ |++-... .. . ...+||.++|++||+++++|
T Consensus 434 ~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 511 (561)
T PRK06048 434 TVIDIAGDGSFQMN--SQELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRV 511 (561)
T ss_pred cEEEEEeCchhhcc--HHHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEE
Confidence 99999999999999 8999999999999999998886 4431100 00 0 13579999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 199 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 199 dg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
+..+ ++.+ +++++.+.++|+|||+.+.+
T Consensus 512 ~t~~--el~~----al~~a~~~~~p~liev~~~~ 539 (561)
T PRK06048 512 EKPS--EVRP----AIEEAVASDRPVVIDFIVEC 539 (561)
T ss_pred CCHH--HHHH----HHHHHHhCCCCEEEEEEecC
Confidence 8755 5555 55555567899999999865
No 77
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.80 E-value=9.8e-20 Score=187.03 Aligned_cols=152 Identities=22% Similarity=0.426 Sum_probs=118.2
Q ss_pred CCCHHHHHHHhhCCCCCC-CcCCCCccccccC------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcE
Q 019523 61 GVPARAVMSELFGKATGC-CRGQGGSMHMFSK------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 131 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~~-~~g~~G~~h~~~~------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~ 131 (339)
+++|..++.+|....++. +..|.|+...|.. + +..++++|+||+++|+|+|+++| .++++
T Consensus 382 ~l~~~~~~~~l~~~~~d~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGaala-----------~p~~~ 450 (585)
T CHL00099 382 SLSPQEVINEISQLAPDAYFTTDVGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQIA-----------HPNEL 450 (585)
T ss_pred CcCHHHHHHHHHhhCCCeEEEECCcHHHHHHHHhccCCCCcEEcCccccchhhhHHHHHHHHHh-----------CCCCe
Confidence 588999999998877653 4567775433321 1 22356789999999999999999 68899
Q ss_pred EEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccc--------------cccChhhhhhcccCCCcEEE
Q 019523 132 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR--------------ATSDPQIYKKGPAFGMPGFH 197 (339)
Q Consensus 132 vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~--------------~~~~~d~~~~a~a~G~~~~~ 197 (339)
||+++|||+|+|+ .++|.||++++||+++||.||+ +++..... ....+||.+++++||+++++
T Consensus 451 vv~i~GDG~f~m~--~~eL~Ta~~~~l~~~~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~ 527 (585)
T CHL00099 451 VICISGDASFQMN--LQELGTIAQYNLPIKIIIINNK-WQGMVRQWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLR 527 (585)
T ss_pred EEEEEcchhhhhh--HHHHHHHHHhCCCeEEEEEECC-cchHHHHHHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEE
Confidence 9999999999998 8999999999999999999997 33322111 11247899999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 198 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 198 Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
|+..+ ++.+ +++++++.++|+||||.+..
T Consensus 528 v~~~~--el~~----al~~a~~~~~p~liev~v~~ 556 (585)
T CHL00099 528 IKSRK--DLKS----SLKEALDYDGPVLIDCQVIE 556 (585)
T ss_pred eCCHH--HHHH----HHHHHHhCCCCEEEEEEECC
Confidence 97644 5544 55666667899999999964
No 78
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.80 E-value=1.1e-19 Score=187.12 Aligned_cols=156 Identities=22% Similarity=0.269 Sum_probs=118.7
Q ss_pred cCCCHHHHHHHhhCCCCC--CCcCCCCccccccC---------CCcccccccccccchHHHHHHHHHHHHhhhhhhccCC
Q 019523 60 KGVPARAVMSELFGKATG--CCRGQGGSMHMFSK---------EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADC 128 (339)
Q Consensus 60 ~g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~---------~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~ 128 (339)
.+++|..++.+|...++. ++..+.|+++.|.. .+..++++|+||+++|+|+|+++| .|
T Consensus 364 ~~l~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la-----------~p 432 (597)
T PRK08273 364 DPVNPQRVFWELSPRLPDNAILTADSGSCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFA-----------HP 432 (597)
T ss_pred CCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHh-----------CC
Confidence 358999999999988774 34567776544321 122457789999999999999999 78
Q ss_pred CcEEEEEeCCCCcccchHHHHHHHHHhC-----CCCEEEEEEcCC-eeeccccc------------ccccChhhhhhccc
Q 019523 129 DHVTLAFFGDGTCNNGQFFECLNMAALW-----KLPIVFVVENNL-WAIGMSHL------------RATSDPQIYKKGPA 190 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~g~~~eal~~A~~~-----~Lpvi~vv~NN~-~~i~~~~~------------~~~~~~d~~~~a~a 190 (339)
+++|||++|||+|+|+. .++|.||+++ +||+++||.||+ |++-...+ ...+.+||.++|++
T Consensus 433 ~~~Vv~i~GDG~f~m~~-~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a 511 (597)
T PRK08273 433 DRPVIALVGDGAMQMNG-MAELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAEL 511 (597)
T ss_pred CCcEEEEEcchhHhccc-hHHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHhcCCCcccccccCCCCCHHHHHHH
Confidence 99999999999999872 3899999999 899999999996 54311000 01135789999999
Q ss_pred CCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeC
Q 019523 191 FGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 233 (339)
Q Consensus 191 ~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~ 233 (339)
||+++++|+..+ ++.. +++++.+.++|+||||.+.+.
T Consensus 512 ~G~~~~~v~~~~--eL~~----al~~a~~~~~p~lIeV~~~~~ 548 (597)
T PRK08273 512 LGLKGIRVDDPE--QLGA----AWDEALAADRPVVLEVKTDPN 548 (597)
T ss_pred CCCEEEEECCHH--HHHH----HHHHHHhCCCCEEEEEEeCCC
Confidence 999999998644 5555 555555678999999998653
No 79
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.80 E-value=3.8e-19 Score=162.47 Aligned_cols=166 Identities=19% Similarity=0.166 Sum_probs=118.7
Q ss_pred ccccccCCCHHHHHHHhhCCCCC--CCcCCCCcccc----ccC-----C--CcccccccccccchHHHHHHHHHHHHhhh
Q 019523 55 VHALSKGVPARAVMSELFGKATG--CCRGQGGSMHM----FSK-----E--HNLLGGFAFIGEGIPVATGAAFTSKYRRE 121 (339)
Q Consensus 55 ~~~l~~g~~p~~~~~el~~~~~~--~~~g~~G~~h~----~~~-----~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~ 121 (339)
++.+..|++-..++.+|...+++ ...++.|...+ +.. . ....+..++||+++|.|+|++++
T Consensus 4 ~~~~C~gC~~~~~~~~l~~~lp~d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~~~gsmG~GlpaAiGa~~a------ 77 (235)
T cd03376 4 GHRACAGCGAALALRHVLKALGPDTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFENAAAVASGIEAALKALGR------ 77 (235)
T ss_pred CCccCCCCccHHHHHHHHHHhhcCeEEEeCCCcccccCCcCCCccccccceehhhcCHHHHHHHHHHHHHHhcc------
Confidence 34556677777777777777764 24566665433 211 1 12234457999999999999887
Q ss_pred hhhccCCCcEEEEEeCCCCc-ccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccc-ccc--------------------c
Q 019523 122 VLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS-HLR--------------------A 178 (339)
Q Consensus 122 ~~~~~~~~~~vv~~~GDG~~-~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~-~~~--------------------~ 178 (339)
.|+++|||++|||++ +++ .++|.+|+++++|+++||.||+ |++... ... .
T Consensus 78 -----~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~ 150 (235)
T cd03376 78 -----GKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKK 150 (235)
T ss_pred -----CCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccc
Confidence 689999999999995 788 8999999999999999999996 553111 000 1
Q ss_pred ccChhhhhhcccCCCcEEE-ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCC
Q 019523 179 TSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 237 (339)
Q Consensus 179 ~~~~d~~~~a~a~G~~~~~-Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~ 237 (339)
...+|+.++|++||++++. +...++.++.+++++ +.+.++|+|||+.+.-...|.
T Consensus 151 ~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~----a~~~~gP~lIev~~~C~~~~~ 206 (235)
T cd03376 151 QPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKK----ALSIEGPAYIHILSPCPTGWR 206 (235)
T ss_pred cccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHH----HHhCCCCEEEEEECCCCCCCC
Confidence 1346999999999999873 455677777665544 445789999999877655443
No 80
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.80 E-value=1.6e-19 Score=184.72 Aligned_cols=154 Identities=24% Similarity=0.378 Sum_probs=118.3
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...+++ ++..+.|+...|.. + +..++++|+||+++|.|+|+++| .|+
T Consensus 364 ~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la-----------~p~ 432 (563)
T PRK08527 364 VLKPQWVIERVGELLGDDAIISTDVGQHQMWVAQFYPFNYPRQLATSGGLGTMGYGLPAALGAKLA-----------VPD 432 (563)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh-----------CCC
Confidence 37889999999998875 35567775433321 1 22356779999999999999999 688
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccc-------------cccChhhhhhcccCCCcEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-------------ATSDPQIYKKGPAFGMPGF 196 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~-------------~~~~~d~~~~a~a~G~~~~ 196 (339)
++|||++|||+|+|+ .++|.||++++||+++||.||+ +++..... ....+|+.++|++||++++
T Consensus 433 ~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~-~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~ 509 (563)
T PRK08527 433 KVVINFTGDGSILMN--IQELMTAVEYKIPVINIILNNN-FLGMVRQWQTFFYEERYSETDLSTQPDFVKLAESFGGIGF 509 (563)
T ss_pred CcEEEEecCchhccc--HHHHHHHHHhCCCeEEEEEECC-cchhHHHHHHhhcCCceeeccCCCCCCHHHHHHHCCCeEE
Confidence 899999999999998 7899999999999999999886 33322111 0124789999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC
Q 019523 197 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 234 (339)
Q Consensus 197 ~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~ 234 (339)
+|+..+ ++.+ +++++.+.++|+||||.+.+..
T Consensus 510 ~v~~~~--el~~----al~~a~~~~~p~lieV~v~~~~ 541 (563)
T PRK08527 510 RVTTKE--EFDK----ALKEALESDKVALIDVKIDRFE 541 (563)
T ss_pred EECCHH--HHHH----HHHHHHhCCCCEEEEEEECCcc
Confidence 997544 5555 5555556789999999997643
No 81
>PRK08617 acetolactate synthase; Reviewed
Probab=99.80 E-value=9.1e-20 Score=186.12 Aligned_cols=154 Identities=20% Similarity=0.237 Sum_probs=119.2
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++++|...+++ .+..+.|+++.|.. + ..+++++|+||+++|+|+|+++| .++
T Consensus 364 ~i~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la-----------~p~ 432 (552)
T PRK08617 364 AVHPLRIIRALQDIVTDDTTVTVDVGSHYIWMARYFRSYEPRHLLFSNGMQTLGVALPWAIAAALV-----------RPG 432 (552)
T ss_pred CcCHHHHHHHHHHhcCCCcEEEeCCcHHHHHHHHhccccCCCeEEecCccccccccccHHHhhHhh-----------cCC
Confidence 47888999999888775 34567776544321 1 12356789999999999999999 788
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccc-----------cccChhhhhhcccCCCcEEEe
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------ATSDPQIYKKGPAFGMPGFHV 198 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~-----------~~~~~d~~~~a~a~G~~~~~V 198 (339)
++|||++|||+|+|+ .++|.||+++++|+++||.||+ ++++.... ....+||.++|++||+++.+|
T Consensus 433 ~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 509 (552)
T PRK08617 433 KKVVSVSGDGGFLFS--AMELETAVRLKLNIVHIIWNDG-HYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRV 509 (552)
T ss_pred CcEEEEEechHHhhh--HHHHHHHHHhCCCeEEEEEECC-ccchHHHHHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEE
Confidence 999999999999999 8999999999999998888886 34433211 113579999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC
Q 019523 199 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 234 (339)
Q Consensus 199 dg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~ 234 (339)
...+ ++.+ +++++.+.++|+|||+.+.+..
T Consensus 510 ~~~~--eL~~----al~~a~~~~~p~liev~~~~~~ 539 (552)
T PRK08617 510 TSPD--ELEP----VLREALATDGPVVIDIPVDYSD 539 (552)
T ss_pred CCHH--HHHH----HHHHHHhCCCcEEEEEEecccc
Confidence 7654 5554 5555666789999999987543
No 82
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.80 E-value=1.7e-19 Score=184.95 Aligned_cols=154 Identities=21% Similarity=0.201 Sum_probs=117.9
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------CCc--ccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~~~--~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++..|....+. ....+.|+.+.|.. ... .++.+|+||+++|+|+|+++| .++
T Consensus 358 ~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la-----------~p~ 426 (578)
T PRK06546 358 PIHPEYVASILDELAADDAVFTVDTGMCNVWAARYITPNGRRRVIGSFRHGSMANALPHAIGAQLA-----------DPG 426 (578)
T ss_pred CcCHHHHHHHHHHhccCCcEEEECCcHHHHHHHHhcCCCCCceEEccCCcccccchhHHHHHHHHh-----------CCC
Confidence 37889999999887764 34567775544322 112 246779999999999999999 789
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccc-------c--ccccChhhhhhcccCCCcEEEec
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH-------L--RATSDPQIYKKGPAFGMPGFHVD 199 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~-------~--~~~~~~d~~~~a~a~G~~~~~Vd 199 (339)
++|||++|||+|+++ .++|.||+++++|+++||.||+ |++.... . .....+||.++|++||+++.+|+
T Consensus 427 ~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~ 504 (578)
T PRK06546 427 RQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDFGTDHPPVDYAAIAAALGIHAVRVE 504 (578)
T ss_pred CcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcccccCCCCCHHHHHHHCCCeeEEeC
Confidence 999999999999998 8899999999999999999996 4432100 0 11245799999999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeC
Q 019523 200 GMDVLKVREVAKEAIERARRGEGPTLVECETYRF 233 (339)
Q Consensus 200 g~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~ 233 (339)
. +.++.+ |++++.+.++|+|||+.+.+.
T Consensus 505 ~--~~el~~----al~~a~~~~gp~lIev~~~~~ 532 (578)
T PRK06546 505 D--PKDVRG----ALREAFAHPGPALVDVVTDPN 532 (578)
T ss_pred C--HHHHHH----HHHHHHhCCCCEEEEEEeCCC
Confidence 4 556655 555555678999999998654
No 83
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.79 E-value=1e-19 Score=186.37 Aligned_cols=153 Identities=22% Similarity=0.396 Sum_probs=117.6
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCcccccc-----C--C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-----K--E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~-----~--~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...++. ++..+.|+...|. . + +..++++|+||+++|.|+|+++| .|+
T Consensus 374 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala-----------~p~ 442 (571)
T PRK07710 374 SIKPQKAIEMLYEITKGEAIVTTDVGQHQMWAAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLA-----------KPD 442 (571)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh-----------CCC
Confidence 47889999999887764 3456777543321 1 1 22456779999999999999999 688
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc-----------ccccChhhhhhcccCCCcEEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL-----------RATSDPQIYKKGPAFGMPGFH 197 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~-----------~~~~~~d~~~~a~a~G~~~~~ 197 (339)
++||+++|||+|+|. .++|+||.++++|+++||.||+ |++-...+ .....+||.++|++||+++.+
T Consensus 443 ~~vv~i~GDGsf~m~--~~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~ 520 (571)
T PRK07710 443 ETVVAIVGDGGFQMT--LQELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVR 520 (571)
T ss_pred CcEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcceeccCCCCCCHHHHHHHCCCeEEE
Confidence 999999999999998 7889999999999998888885 44311100 011357999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 198 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 198 Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
|++.+ ++ ..|++++++.++|+||||.+.+
T Consensus 521 v~~~~--el----~~al~~a~~~~~p~lieV~vd~ 549 (571)
T PRK07710 521 IDDEL--EA----KEQLQHAIELQEPVVIDCRVLQ 549 (571)
T ss_pred ECCHH--HH----HHHHHHHHhCCCCEEEEEEecC
Confidence 98754 54 4466666677899999999975
No 84
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.79 E-value=1.5e-19 Score=185.31 Aligned_cols=155 Identities=19% Similarity=0.283 Sum_probs=118.8
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCcccccc-------CCC--cccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~-------~~~--~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++++|...+++ .+..+.|+..+|. .+. ..++++|+||+++|+|+|+++| .++
T Consensus 371 ~i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la-----------~p~ 439 (572)
T PRK06456 371 KLKPWKIMKTIRQALPRDAIVTTGVGQHQMWAEVFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLA-----------RPD 439 (572)
T ss_pred CcCHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHhcCcCCCCcEEcCCCcccccchhHHHHHHHHh-----------CCC
Confidence 48899999999988775 3455666543332 112 2356789999999999999999 788
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc----------c-ccChhhhhhcccCCCcEEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----------A-TSDPQIYKKGPAFGMPGFH 197 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~----------~-~~~~d~~~~a~a~G~~~~~ 197 (339)
++||+++|||+|+|+ .++|.||++++||+++||.||+ |++-...+. . ...+||.++|++||+++++
T Consensus 440 ~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~ 517 (572)
T PRK06456 440 KVVVDLDGDGSFLMT--GTNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFN 517 (572)
T ss_pred CeEEEEEccchHhcc--hHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEE
Confidence 999999999999999 8999999999999999999986 543211100 0 1347999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC
Q 019523 198 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 234 (339)
Q Consensus 198 Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~ 234 (339)
|+..+ ++.+ +++++.+.++|+||||.+.+..
T Consensus 518 v~~~~--eL~~----al~~a~~~~~p~lIev~v~~~~ 548 (572)
T PRK06456 518 VTTYE--DIEK----SLKSAIKEDIPAVIRVPVDKEE 548 (572)
T ss_pred eCCHH--HHHH----HHHHHHhCCCCEEEEEEeCccc
Confidence 97544 5555 5555666789999999997633
No 85
>PLN02470 acetolactate synthase
Probab=99.79 E-value=1.1e-19 Score=186.79 Aligned_cols=152 Identities=24% Similarity=0.344 Sum_probs=116.7
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------CC--cccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~~--~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|....++ ++..+.|+...|.. +. ..++++|+||+++|+|+|+++| .|+
T Consensus 376 ~l~~~~~~~~l~~~~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la-----------~p~ 444 (585)
T PLN02470 376 AIPPQYAIQVLDELTDGNAIISTGVGQHQMWAAQWYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAA-----------NPD 444 (585)
T ss_pred CcCHHHHHHHHHhhCCCCEEEEECCcHHHHHHHHhcccCCCCeEEcCCccccccchHHHHHHHHHh-----------CCC
Confidence 48899999999887764 24566675443321 12 2356779999999999999999 789
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccc-----------c-cc--------Chhhhhhcc
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------A-TS--------DPQIYKKGP 189 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~-----------~-~~--------~~d~~~~a~ 189 (339)
++|||++|||+|+|+ .++|.||.+++||+++||.||+ +++..... . .. .+||.++|+
T Consensus 445 ~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~v~ivV~NN~-~yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~ 521 (585)
T PLN02470 445 AIVVDIDGDGSFIMN--IQELATIHVENLPVKIMVLNNQ-HLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAE 521 (585)
T ss_pred CcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCC-cchHHHHHHHHHhCCceeeeecCccccccCCCCCHHHHHH
Confidence 999999999999999 8999999999999999999886 33322110 0 01 269999999
Q ss_pred cCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 190 AFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 190 a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
+||+++.+|+..+ ++.+ |++++.+.++|+||||.+.+
T Consensus 522 a~G~~~~~v~~~~--el~~----al~~a~~~~~p~lieV~i~~ 558 (585)
T PLN02470 522 GCKIPAARVTRKS--DLRE----AIQKMLDTPGPYLLDVIVPH 558 (585)
T ss_pred HCCCeEEEECCHH--HHHH----HHHHHHhCCCCEEEEEEeCC
Confidence 9999999997654 6655 55555567899999999965
No 86
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.79 E-value=2.2e-18 Score=177.86 Aligned_cols=199 Identities=23% Similarity=0.227 Sum_probs=132.4
Q ss_pred cccccCCCChHHHHHHHHHccC-CCCeee-e-CCCCcccccccCCCHHHHHHHhhCCCCCCCcCCCCccccccCCC-ccc
Q 019523 21 FGFVHLYNGQEAVSTGFIKLLK-KEDSVV-S-TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEH-NLL 96 (339)
Q Consensus 21 ~g~~~~~~G~Ea~~~~~~~~l~-~~D~i~-~-~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~g~~G~~h~~~~~~-~~~ 96 (339)
.|+..++.|-=-+.+++...++ |.|.++ . .|...++.+..|. .+-+..++..- + ..| |....+. ...
T Consensus 45 ~GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~Y~~~~l~g~--~~~l~~~r~~~-~----l~g--~p~~~e~~~~~ 115 (641)
T PRK12571 45 GGHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQCYPHKILTGR--RDRFRTLRQKG-G----LSG--FTKRSESEYDP 115 (641)
T ss_pred CCCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHHHHHHHHhCC--HHHHhhhhhCC-C----cCC--CCCCCcCCCCC
Confidence 3776677776556666665565 457553 3 3555555555553 12222222111 1 111 1111110 101
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeeccccc
Q 019523 97 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 176 (339)
Q Consensus 97 ~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~ 176 (339)
...++-+.+++.|+|+|+|.++. +++++|+|++|||++++|.++|++++|+++++|+++|++||+|+++.+..
T Consensus 116 ~~~g~~~gslg~a~G~A~a~~~~-------~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~ 188 (641)
T PRK12571 116 FGAAHSSTSISAALGFAKARALG-------QPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVG 188 (641)
T ss_pred cccCCCcChHHHHHHHHHHHHHh-------CCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCcc
Confidence 12222345577888888887766 57889999999999999999999999999999999999999999987663
Q ss_pred -------ccccChhh-----------------------------------hhhcccCCCcEE-EecCCCHHHHHHHHHHH
Q 019523 177 -------RATSDPQI-----------------------------------YKKGPAFGMPGF-HVDGMDVLKVREVAKEA 213 (339)
Q Consensus 177 -------~~~~~~d~-----------------------------------~~~a~a~G~~~~-~Vdg~d~~~v~~a~~~A 213 (339)
.-.....+ ..++++|||.++ .|||+|+.++.+++
T Consensus 189 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al--- 265 (641)
T PRK12571 189 ALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVL--- 265 (641)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHH---
Confidence 11111111 368899999999 79999999887755
Q ss_pred HHHHHc-CCCCEEEEEEEeeCCCCCCC
Q 019523 214 IERARR-GEGPTLVECETYRFRGHSLA 239 (339)
Q Consensus 214 ~~~ar~-~~gP~lIev~t~r~~gh~~~ 239 (339)
+.+++ .++|++|+++|.+++|.+..
T Consensus 266 -~~ak~~~~~P~~I~~~T~kGkG~~~~ 291 (641)
T PRK12571 266 -RAARARADGPVLVHVVTEKGRGYAPA 291 (641)
T ss_pred -HHHHhCCCCCEEEEEEecCccCcchh
Confidence 44544 57899999999999998754
No 87
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.79 E-value=1.6e-19 Score=184.24 Aligned_cols=153 Identities=20% Similarity=0.300 Sum_probs=117.1
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------CC--cccccccccccchHHHHHHHHHHHHhhhhhhccCC-
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADC- 128 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~~--~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~- 128 (339)
.++|..++.+|...+++ ....+.|+..+|.. +. .+++++|+||+++|.|+|+++| .+
T Consensus 346 ~i~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~ 414 (549)
T PRK06457 346 PMKPQRVAYIVSQKCKKDAVIVTDTGNVTMWTARHFRASGEQTFIFSAWLGSMGIGVPGSVGASFA-----------VEN 414 (549)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhc-----------CCC
Confidence 47889999999988775 34557775443321 11 2346789999999999999999 67
Q ss_pred CcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc---------ccccChhhhhhcccCCCcEEEe
Q 019523 129 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL---------RATSDPQIYKKGPAFGMPGFHV 198 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~---------~~~~~~d~~~~a~a~G~~~~~V 198 (339)
+++|||++|||+|+|. .++|.||++++||+++||.||+ |++-...+ .....+||.++|++||+++.+|
T Consensus 415 ~~~Vv~i~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 492 (549)
T PRK06457 415 KRQVISFVGDGGFTMT--MMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRL 492 (549)
T ss_pred CCeEEEEEcccHHhhh--HHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEe
Confidence 8999999999999999 8999999999999998888885 54321100 0113579999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 199 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 199 dg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
+.. .++.. +++++.+.++|+||||.+.+
T Consensus 493 ~~~--~el~~----al~~a~~~~~p~lIeV~i~~ 520 (549)
T PRK06457 493 EEP--KEAEE----IIEEFLNTKGPAVLDAIVDP 520 (549)
T ss_pred CCH--HHHHH----HHHHHHhCCCCEEEEEEeCc
Confidence 754 46555 55555567899999999864
No 88
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.79 E-value=2.6e-19 Score=183.59 Aligned_cols=156 Identities=20% Similarity=0.249 Sum_probs=119.3
Q ss_pred CCCHHHHHHHhhCCCCCC--CcCCCCccccccC-------CC--cccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATGC--CRGQGGSMHMFSK-------EH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~~--~~g~~G~~h~~~~-------~~--~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...+++. ...+.|+...|.. +. ..++++|+||+++|.|+|+++| .|+
T Consensus 358 ~i~~~~~~~~l~~~l~~d~ii~~D~g~~~~~~~~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la-----------~p~ 426 (575)
T TIGR02720 358 PLQAYQVYRAINKIAEDDAIYSIDVGDININSNRHLKMTPKNKWITSNLFATMGVGVPGAIAAKLN-----------YPD 426 (575)
T ss_pred CcCHHHHHHHHHHhCCCCcEEEeCCcHHHHHHHHhCCcCCCCeEEcCCCcchhhchHHHHHHHHHh-----------CCC
Confidence 488999999999888753 4567776444421 11 2356689999999999999999 789
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccc----c-----ccccChhhhhhcccCCCcEEEec
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH----L-----RATSDPQIYKKGPAFGMPGFHVD 199 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~----~-----~~~~~~d~~~~a~a~G~~~~~Vd 199 (339)
++||+++|||+|+|+ .++|.|+++++||+++||.||+ |++.... . .....+||+++|++||+++.+|+
T Consensus 427 r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v~ 504 (575)
T TIGR02720 427 RQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRVN 504 (575)
T ss_pred CcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcccccCCCCCHHHHHHHCCCEEEEeC
Confidence 999999999999998 8999999999999998888885 5542110 0 01235799999999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeC
Q 019523 200 GMDVLKVREVAKEAIERARRGEGPTLVECETYRF 233 (339)
Q Consensus 200 g~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~ 233 (339)
..+ ++.++++++++ . +.++|+|||+.+...
T Consensus 505 ~~~--el~~al~~a~~-~-~~~~p~liev~i~~~ 534 (575)
T TIGR02720 505 KIE--QLPAVFEQAKA-I-KQGKPVLIDAKITGD 534 (575)
T ss_pred CHH--HHHHHHHHHHh-h-CCCCcEEEEEEeCCC
Confidence 654 66665555543 1 568999999998653
No 89
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.79 E-value=3.6e-19 Score=180.86 Aligned_cols=151 Identities=22% Similarity=0.269 Sum_probs=116.4
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------CC-cccccccccccchHHHHHHHHHHHHhhhhhhccCCCc
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EH-NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 130 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~~-~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~ 130 (339)
.+++..++++|...+++ .+..+.|+...|.. +. .+....|+||+++|.|+|+++| .+++
T Consensus 358 ~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la-----------~p~~ 426 (530)
T PRK07092 358 PLSVAFVLQTLAALRPADAIVVEEAPSTRPAMQEHLPMRRQGSFYTMASGGLGYGLPAAVGVALA-----------QPGR 426 (530)
T ss_pred CcCHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHhcCcCCCCceEccCCCcccchHHHHHHHHHh-----------CCCC
Confidence 37899999999998875 34566665433211 11 2334468999999999999999 6789
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccc----------cccccChhhhhhcccCCCcEEEec
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH----------LRATSDPQIYKKGPAFGMPGFHVD 199 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~----------~~~~~~~d~~~~a~a~G~~~~~Vd 199 (339)
+|||++|||+|+|+ .++|++|.+++||+++||.||+ |++.... ......+|+.+++++||+++++|+
T Consensus 427 ~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~ 504 (530)
T PRK07092 427 RVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVS 504 (530)
T ss_pred eEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeC
Confidence 99999999999999 8999999999999999999987 6652211 111245789999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 019523 200 GMDVLKVREVAKEAIERARRGEGPTLVECET 230 (339)
Q Consensus 200 g~d~~~v~~a~~~A~~~ar~~~gP~lIev~t 230 (339)
+. .++ .+|++++++.++|+|||+.+
T Consensus 505 ~~--~~l----~~al~~a~~~~~p~liev~~ 529 (530)
T PRK07092 505 DA--AEL----ADALARALAADGPVLVEVEV 529 (530)
T ss_pred CH--HHH----HHHHHHHHhCCCCEEEEEEc
Confidence 64 354 45666677788999999986
No 90
>PRK08611 pyruvate oxidase; Provisional
Probab=99.79 E-value=1.7e-19 Score=185.03 Aligned_cols=154 Identities=24% Similarity=0.257 Sum_probs=117.9
Q ss_pred CCCHHHHHHHhhCCCCCC--CcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATGC--CRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~~--~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...+++. ...|.|+...|.. + +..+.++|+||+++|.|+|+++| .|+
T Consensus 358 ~i~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~ 426 (576)
T PRK08611 358 PIKPERVMAAIQKIADDDAVLSVDVGTVTVWSARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIA-----------FPD 426 (576)
T ss_pred CcCHHHHHHHHhhhcCCCeEEEEcChHHHHHHHhcCCcCCCCeEEeCCCchhhhhhHHHHHHHHHh-----------CCC
Confidence 378899999999888753 4567775443321 1 12345679999999999999999 788
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc---------ccccChhhhhhcccCCCcEEEec
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL---------RATSDPQIYKKGPAFGMPGFHVD 199 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~---------~~~~~~d~~~~a~a~G~~~~~Vd 199 (339)
++||+++|||+|+|+ .++|.||+++++|+++||.||+ |++-...+ .....+||.++|++||+++++|+
T Consensus 427 ~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~ 504 (576)
T PRK08611 427 RQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEYAIDLSDMDYAKFAEACGGKGYRVE 504 (576)
T ss_pred CcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC
Confidence 999999999999999 8999999999999988888885 54311000 11135799999999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeC
Q 019523 200 GMDVLKVREVAKEAIERARRGEGPTLVECETYRF 233 (339)
Q Consensus 200 g~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~ 233 (339)
..+ ++.+ |++++.+.++|+||||.+.+.
T Consensus 505 ~~~--eL~~----al~~a~~~~~p~lIeV~vd~~ 532 (576)
T PRK08611 505 KAE--ELDP----AFEEALAQDKPVIIDVYVDPN 532 (576)
T ss_pred CHH--HHHH----HHHHHHhCCCCEEEEEEeCCc
Confidence 654 5544 555666779999999999753
No 91
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.79 E-value=2.4e-19 Score=182.87 Aligned_cols=155 Identities=23% Similarity=0.360 Sum_probs=118.5
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|....+. +...|.|+...|.. + +..++++|+||+++|.|+|+++| .++
T Consensus 351 ~~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la-----------~p~ 419 (548)
T PRK08978 351 AIYAPALLKQLSDRKPADTVVTTDVGQHQMWVAQHMRFTRPENFITSSGLGTMGFGLPAAIGAQVA-----------RPD 419 (548)
T ss_pred CcCHHHHHHHHHHhCCCCcEEEecCcHHHHHHHHhcccCCCCeEEeCCchhhhhchHHHHHHHHHh-----------CCC
Confidence 47888999999888774 35667776443311 1 12356779999999999999999 788
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc--------ccc---cChhhhhhcccCCCcEEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL--------RAT---SDPQIYKKGPAFGMPGFH 197 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~--------~~~---~~~d~~~~a~a~G~~~~~ 197 (339)
++|||++|||+|+|. .++|.||+++++|+++||.||+ |++-...+ ... .++||.++|++||+++.+
T Consensus 420 ~~vv~i~GDG~f~~~--~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~ 497 (548)
T PRK08978 420 DTVICVSGDGSFMMN--VQELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERYSETDLSDNPDFVMLASAFGIPGQT 497 (548)
T ss_pred CcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcceecCCCCCCCHHHHHHHCCCeEEE
Confidence 999999999999999 8999999999999998888885 44321100 001 347999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC
Q 019523 198 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 234 (339)
Q Consensus 198 Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~ 234 (339)
|+..+ ++.+ |++++.+.++|+|||+.+.+..
T Consensus 498 v~~~~--el~~----al~~a~~~~~p~lIeV~id~~~ 528 (548)
T PRK08978 498 ITRKD--QVEA----ALDTLLNSEGPYLLHVSIDELE 528 (548)
T ss_pred ECCHH--HHHH----HHHHHHhCCCCEEEEEEecCcc
Confidence 97554 5555 5555556789999999997643
No 92
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.79 E-value=2.9e-19 Score=183.36 Aligned_cols=154 Identities=23% Similarity=0.276 Sum_probs=116.8
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCcccccc-------CCC-c--ccccccccccchHHHHHHHHHHHHhhhhhhccCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEH-N--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADC 128 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~-------~~~-~--~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~ 128 (339)
.++|..++.+|...++. ++..+.|+..+|. .+. . .++++++||+++|.|+|+++| ++
T Consensus 386 ~i~~~~v~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la-----------~~ 454 (578)
T PRK06112 386 PIRPERIMAELQAVLTGDTIVVADASYSSIWVANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVA-----------RP 454 (578)
T ss_pred CcCHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHhcCccCCCceEECCCCccccccHHHHHHHHHhh-----------CC
Confidence 47889999999998875 3446666543331 111 2 245678999999999999999 78
Q ss_pred CcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc----------cccChhhhhhcccCCCcEEE
Q 019523 129 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----------ATSDPQIYKKGPAFGMPGFH 197 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~----------~~~~~d~~~~a~a~G~~~~~ 197 (339)
+++|||++|||+|+|+ .++|++|+++++|+++||.||+ |++-...+. ....+||.++|++||+++++
T Consensus 455 ~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~ 532 (578)
T PRK06112 455 GAPVICLVGDGGFAHV--WAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHTDACHFAAVDHAAIARACGCDGVR 532 (578)
T ss_pred CCcEEEEEcchHHHhH--HHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCccccCcCCCCCHHHHHHHCCCeEEE
Confidence 8999999999999987 8999999999999999999996 332111010 01257899999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeC
Q 019523 198 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 233 (339)
Q Consensus 198 Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~ 233 (339)
|+..+ ++. .+++++++.++|+||||++.+.
T Consensus 533 v~~~~--el~----~al~~a~~~~gp~lIev~~~~~ 562 (578)
T PRK06112 533 VEDPA--ELA----QALAAAMAAPGPTLIEVITDPS 562 (578)
T ss_pred eCCHH--HHH----HHHHHHHhCCCCEEEEEEcCcc
Confidence 97644 554 4566666778999999998653
No 93
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.79 E-value=3.4e-19 Score=182.34 Aligned_cols=153 Identities=18% Similarity=0.299 Sum_probs=117.8
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCcccccc-------CC--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KE--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~-------~~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...+++ .+..+.|+...|. .+ +..++++|+||+++|+|+|+++| .++
T Consensus 369 ~l~~~~v~~~l~~~l~~~~iv~~D~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la-----------~~~ 437 (564)
T PRK08155 369 PLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALA-----------NPE 437 (564)
T ss_pred CcCHHHHHHHHHHhCCCCeEEEECCchHHHHHHHhccccCCCeEEeCCCcccccchhHHHHHHHHh-----------CCC
Confidence 47889999999988775 3456777543321 11 22356779999999999999999 688
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc----------c-ccChhhhhhcccCCCcEEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----------A-TSDPQIYKKGPAFGMPGFH 197 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~----------~-~~~~d~~~~a~a~G~~~~~ 197 (339)
++|||++|||+|+|+ .++|.||+++++|+++||.||+ |++....+. . ...+||.++|++||+++++
T Consensus 438 ~~vv~i~GDGsf~~~--~~eL~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~ 515 (564)
T PRK08155 438 RKVLCFSGDGSLMMN--IQEMATAAENQLDVKIILMNNEALGLVHQQQSLFYGQRVFAATYPGKINFMQIAAGFGLETCD 515 (564)
T ss_pred CcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEE
Confidence 999999999999998 7889999999999999999996 554221110 1 1357899999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 198 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 198 Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
|+..+ ++.+ +++++++.++|+||||.+.+
T Consensus 516 v~~~~--el~~----al~~a~~~~~p~lIeV~~~~ 544 (564)
T PRK08155 516 LNNEA--DPQA----ALQEAINRPGPALIHVRIDA 544 (564)
T ss_pred eCCHH--HHHH----HHHHHHhCCCCEEEEEEeCC
Confidence 98654 5555 55555667899999999865
No 94
>PRK08322 acetolactate synthase; Reviewed
Probab=99.79 E-value=3.6e-19 Score=181.52 Aligned_cols=152 Identities=20% Similarity=0.299 Sum_probs=116.6
Q ss_pred CCHHHHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCc
Q 019523 62 VPARAVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 130 (339)
Q Consensus 62 ~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~ 130 (339)
++|..++.+|...+++ .+..+.|+..+|.. + +..+.++|+||+++|.|+|+++| .|++
T Consensus 357 l~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la-----------~p~~ 425 (547)
T PRK08322 357 MKPQRIVADLRKVMPDDDIVILDNGAYKIWFARNYRAYEPNTCLLDNALATMGAGLPSAIAAKLV-----------HPDR 425 (547)
T ss_pred cCHHHHHHHHHHHCCCCeEEEECCcHHHHHHHHhcccCCCCCEEcCCCcccccchhHHHHHHHHh-----------CCCC
Confidence 7888999999888774 35567776434321 1 12356789999999999999999 7899
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc---------ccccChhhhhhcccCCCcEEEecC
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL---------RATSDPQIYKKGPAFGMPGFHVDG 200 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~---------~~~~~~d~~~~a~a~G~~~~~Vdg 200 (339)
+||+++|||+|+|+ .++|.||.++++|+++||.||+ |++-...+ .....+||.++|++||+++++|+.
T Consensus 426 ~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~~ 503 (547)
T PRK08322 426 KVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFEDFGLDFGNPDFVKYAESYGAKGYRVES 503 (547)
T ss_pred cEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCcccccCCCCCHHHHHHHCCCeEEEeCC
Confidence 99999999999999 8999999999999998888885 54321100 011357999999999999999975
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 201 MDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 201 ~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
. +++.+ +++.+.+.++|+||||.+.+
T Consensus 504 ~--~eL~~----al~~a~~~~~p~lIev~v~~ 529 (547)
T PRK08322 504 A--DDLLP----TLEEALAQPGVHVIDCPVDY 529 (547)
T ss_pred H--HHHHH----HHHHHHhCCCCEEEEEEecC
Confidence 4 46655 45555567899999999864
No 95
>PRK08266 hypothetical protein; Provisional
Probab=99.79 E-value=3.3e-19 Score=181.58 Aligned_cols=156 Identities=24% Similarity=0.295 Sum_probs=116.7
Q ss_pred CCHHH-HHHHhhCCCCC--CCcCCCCccccccC-------CCc--ccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 62 VPARA-VMSELFGKATG--CCRGQGGSMHMFSK-------EHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 62 ~~p~~-~~~el~~~~~~--~~~g~~G~~h~~~~-------~~~--~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
++|+. ++.+|...+++ ++..+.|+...|.. +.. .++..|+||+++|+|+|++++ .|+
T Consensus 352 ~~~~~~~~~~l~~~lp~d~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la-----------~p~ 420 (542)
T PRK08266 352 VQPQASYLRAIREALPDDGIFVDELSQVGFASWFAFPVYAPRTFVTCGYQGTLGYGFPTALGAKVA-----------NPD 420 (542)
T ss_pred CCHHHHHHHHHHHhcCCCcEEEeCCcHHHHHHHHhcccCCCCcEEeCCCCcccccHHHHHHHHHHh-----------CCC
Confidence 56654 78888887775 34556664332211 112 345679999999999999999 788
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc----------cccChhhhhhcccCCCcEEEe
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----------ATSDPQIYKKGPAFGMPGFHV 198 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~----------~~~~~d~~~~a~a~G~~~~~V 198 (339)
++|||++|||+|+++ .++|.||.+++||+++||.||+ |++....+. ....+||.++|++||+++++|
T Consensus 421 ~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 498 (542)
T PRK08266 421 RPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRV 498 (542)
T ss_pred CcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEe
Confidence 999999999999999 8999999999999999988885 654221110 113479999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCC
Q 019523 199 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH 236 (339)
Q Consensus 199 dg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh 236 (339)
++.+ ++.+ +++++.+.++|+|||+.++|...+
T Consensus 499 ~~~~--el~~----al~~a~~~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 499 DSPE--ELRA----ALEAALAHGGPVLIEVPVPRGSEA 530 (542)
T ss_pred CCHH--HHHH----HHHHHHhCCCcEEEEEEecCCCCc
Confidence 8654 5544 555666678999999999877543
No 96
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.78 E-value=2.8e-19 Score=183.36 Aligned_cols=154 Identities=23% Similarity=0.386 Sum_probs=116.5
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...+++ .+..+.|+...|.. + +..++++|+||+++|.|+|+++| .++
T Consensus 371 ~i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la-----------~p~ 439 (574)
T PRK06882 371 VIKPQQVVEAIYRLTNGDAYVASDVGQHQMFAALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFA-----------HPE 439 (574)
T ss_pred CcCHHHHHHHHHhhcCCCeEEEecCchhHHHHHHhccccCCCcEEeCCCcccccchhHHHHHHHhh-----------cCC
Confidence 37888999999887764 24566665433321 1 22356789999999999999999 678
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeeccccc-----------c-c-ccChhhhhhcccCCCcEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-----------R-A-TSDPQIYKKGPAFGMPGF 196 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~-----------~-~-~~~~d~~~~a~a~G~~~~ 196 (339)
++|||++|||+|+|+ .++|.||+++++|+++||.||+ +++.... . . ...+||.++|++||++++
T Consensus 440 ~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~-~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~ 516 (574)
T PRK06882 440 ATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNR-FLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGI 516 (574)
T ss_pred CcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECc-hhHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHCCCeEE
Confidence 899999999999998 7999999999999999999996 2322110 0 0 124789999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEeeCC
Q 019523 197 HVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFR 234 (339)
Q Consensus 197 ~Vdg~d~~~v~~a~~~A~~~ar~-~~gP~lIev~t~r~~ 234 (339)
+|+..+ ++.. +++++.+ .++|+||||.+.+..
T Consensus 517 ~v~~~~--eL~~----al~~a~~~~~~p~liev~i~~~~ 549 (574)
T PRK06882 517 QIDTPD--ELEE----KLTQAFSIKDKLVFVDVNVDETE 549 (574)
T ss_pred EeCCHH--HHHH----HHHHHHhcCCCcEEEEEEecCcc
Confidence 998654 5555 4555544 378999999997633
No 97
>PLN02573 pyruvate decarboxylase
Probab=99.78 E-value=3.8e-19 Score=182.32 Aligned_cols=153 Identities=13% Similarity=0.093 Sum_probs=115.6
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCcccccc-----C--CC--cccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-----K--EH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~-----~--~~--~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++..|...++. ++..+.|+. ++. . .. ..++++|+||+++|+|+|+++| .++
T Consensus 379 ~i~~~~~~~~l~~~l~~d~iiv~D~G~~-~~~~~~~~~~~~~~~~~~~~~gsmG~glpaaiGa~lA-----------~p~ 446 (578)
T PLN02573 379 PLRVNVLFKHIQKMLSGDTAVIAETGDS-WFNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQA-----------APD 446 (578)
T ss_pred ccCHHHHHHHHHHhcCCCCEEEEecccc-hhhHHhccCCCCCeEEeecchhhhhhhhhHHHHHHHh-----------CCC
Confidence 38899999999887764 355666653 221 1 11 2356789999999999999999 788
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc----ccccChhhhhhcccCC-----CcEEEec
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----RATSDPQIYKKGPAFG-----MPGFHVD 199 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~----~~~~~~d~~~~a~a~G-----~~~~~Vd 199 (339)
++|||++|||+|+|+ .++|.||++++||+++||.||+ |++..... ....++||.++|++|| +++.+|+
T Consensus 447 r~vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~ 524 (578)
T PLN02573 447 KRVIACIGDGSFQVT--AQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVR 524 (578)
T ss_pred CceEEEEeccHHHhH--HHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccccCCCCHHHHHHHhcCcCCceeEEEec
Confidence 999999999999999 8999999999999999998885 55422111 1124579999999985 8999998
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 019523 200 GMDVLKVREVAKEAIERARRGEGPTLVECETY 231 (339)
Q Consensus 200 g~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~ 231 (339)
..+ ++.+++++|+.. ..++|+||||.+.
T Consensus 525 ~~~--eL~~al~~a~~~--~~~~p~lieV~v~ 552 (578)
T PLN02573 525 TEE--ELIEAIATATGE--KKDCLCFIEVIVH 552 (578)
T ss_pred CHH--HHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence 654 665555444321 3588999999874
No 98
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.78 E-value=3e-19 Score=182.81 Aligned_cols=152 Identities=24% Similarity=0.369 Sum_probs=116.6
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCcccccc-----C--C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-----K--E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~-----~--~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|....++ ++..+.|+...|. . + +..++++|+||+++|+|+|+++| .|+
T Consensus 368 ~l~~~~~~~~l~~~~~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA-----------~p~ 436 (566)
T PRK07282 368 VVQPQAVIERIGELTNGDAIVVTDVGQHQMWAAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIA-----------NPD 436 (566)
T ss_pred CcCHHHHHHHHHhhcCCCeEEEECCcHHHHHHHHhcccCCCCcEecCCccccccchhhHhheehee-----------cCC
Confidence 47899999999887764 3567777644331 1 1 12356789999999999999999 789
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc----------ccc-cChhhhhhcccCCCcEEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----------RAT-SDPQIYKKGPAFGMPGFH 197 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~----------~~~-~~~d~~~~a~a~G~~~~~ 197 (339)
++||+++|||+|+|. .++|.||.++++|+++||.||+ |++-...+ ... .++||.++|++||+++.+
T Consensus 437 ~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~ 514 (566)
T PRK07282 437 KEVILFVGDGGFQMT--NQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRTSESVFDTLPDFQLMAQAYGIKHYK 514 (566)
T ss_pred CcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCEEEE
Confidence 999999999999999 8999999999999999998886 44311100 011 357999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 198 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 198 Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
|+..+ ++.+ |++.. ..++|+||||.+.+
T Consensus 515 v~~~~--el~~----al~~~-~~~~p~lIeV~v~~ 542 (566)
T PRK07282 515 FDNPE--TLAQ----DLEVI-TEDVPMLIEVDISR 542 (566)
T ss_pred ECCHH--HHHH----HHHHh-cCCCCEEEEEEeCC
Confidence 98654 6655 44432 45899999999975
No 99
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.78 E-value=1.3e-17 Score=175.12 Aligned_cols=211 Identities=19% Similarity=0.177 Sum_probs=146.4
Q ss_pred cccccccCCCCh-HHHHHHHHHccC------CCCeeeeCCCCccccc------ccC-CCHHHHHHHhhCCCCCCCcCCCC
Q 019523 19 KMFGFVHLYNGQ-EAVSTGFIKLLK------KEDSVVSTYRDHVHAL------SKG-VPARAVMSELFGKATGCCRGQGG 84 (339)
Q Consensus 19 ~~~g~~~~~~G~-Ea~~~~~~~~l~------~~D~i~~~~R~~~~~l------~~g-~~p~~~~~el~~~~~~~~~g~~G 84 (339)
++.|+..++.+- +-..++....|+ .+|+|+.. +|+... ..| ++.++ +..++.... ..|-.+
T Consensus 113 ~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~sk--GHasp~lYA~~~l~G~l~~e~-L~~fR~~~~--~~gl~~ 187 (896)
T PRK13012 113 ELGGHIASYASAADLFEVGFNHFFRGRDDAGGGDLVYFQ--PHSAPGIYARAFLEGRLSEEQ-LDHFRQEIG--GPGLSS 187 (896)
T ss_pred CCCCCCcccHHHHHHHHHHHHhhcCCCCCCCCCCEEEEC--cchHHHHHHHHHHcCCCCHHH-HHHhcCCCC--CCCCCC
Confidence 344555444333 222333344565 45876663 555432 245 44444 334443321 112223
Q ss_pred ccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEE
Q 019523 85 SMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFV 163 (339)
Q Consensus 85 ~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~v 163 (339)
..|.+..+-.+...+|+||.|++.|+|+|++.||...+...+..+++|+|++|||.+++|.++|++.+|++++|. +|+|
T Consensus 188 ~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~i 267 (896)
T PRK13012 188 YPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFV 267 (896)
T ss_pred CCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEE
Confidence 334333222344578999999999999999988764322223467899999999999999999999999999998 9999
Q ss_pred EEcCCeeeccccccccc-ChhhhhhcccCCCcEEEe--------------------------c-----------------
Q 019523 164 VENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV--------------------------D----------------- 199 (339)
Q Consensus 164 v~NN~~~i~~~~~~~~~-~~d~~~~a~a~G~~~~~V--------------------------d----------------- 199 (339)
|++|...+..+...-.. ..++.++++++||.+++| |
T Consensus 268 vD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ 347 (896)
T PRK13012 268 INCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREH 347 (896)
T ss_pred EECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHH
Confidence 99998788877654322 468999999999999999 8
Q ss_pred --------------------------CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCC
Q 019523 200 --------------------------GMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 237 (339)
Q Consensus 200 --------------------------g~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~ 237 (339)
|+|+.+|++|+..|.+ ..++|++|.++|.+++|.+
T Consensus 348 ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~---~~~~PtvIla~TvkG~G~~ 408 (896)
T PRK13012 348 FFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVR---HKGQPTVILAKTKKGYGMG 408 (896)
T ss_pred hccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeecCCCC
Confidence 9999999987765543 3457999999999999976
No 100
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.78 E-value=1.2e-18 Score=178.35 Aligned_cols=158 Identities=20% Similarity=0.157 Sum_probs=121.3
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCc-cccccC--C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEE
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGS-MHMFSK--E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL 133 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~-~h~~~~--~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv 133 (339)
.++|..++.+|...+++ .+..+.+. .+++.. + +..++++|+||+++|+|+|+++| .|+++||
T Consensus 384 ~i~~~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la-----------~p~~~vv 452 (569)
T PRK08327 384 PITPAYLSYCLGEVADEYDAIVTEYPFVPRQARLNKPGSYFGDGSAGGLGWALGAALGAKLA-----------TPDRLVI 452 (569)
T ss_pred CcCHHHHHHHHHHhcCccceEEeccHHHHHhcCccCCCCeeeCCCCCCCCcchHHHHHHhhc-----------CCCCeEE
Confidence 48899999999988875 23333332 222221 1 22456789999999999999999 7899999
Q ss_pred EEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcC-Ceeecccc-----------------cccc-cChhhhhhcccCCCc
Q 019523 134 AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSH-----------------LRAT-SDPQIYKKGPAFGMP 194 (339)
Q Consensus 134 ~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN-~~~i~~~~-----------------~~~~-~~~d~~~~a~a~G~~ 194 (339)
|++|||+|+|+...++|+||+++++|+++||.|| +|++.... .... ..+|+.++|++||++
T Consensus 453 ~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~ 532 (569)
T PRK08327 453 ATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGY 532 (569)
T ss_pred EEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCC
Confidence 9999999999853457999999999999999999 56542110 0011 457999999999999
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 019523 195 GFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 231 (339)
Q Consensus 195 ~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~ 231 (339)
+++|+ ++.++.++++++++.++++++|+|||+.+.
T Consensus 533 ~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 533 GERVE--DPEELKGALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred ceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 99997 566998989888887777789999999864
No 101
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.78 E-value=5.4e-19 Score=180.61 Aligned_cols=154 Identities=24% Similarity=0.271 Sum_probs=117.4
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------CCc-ccccccccccchHHHHHHHHHHHHhhhhhhccCCCc
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EHN-LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 130 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~~~-~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~ 130 (339)
.++|..++.+|...+++ .+..+.|+...|.. ... +....|+||+++|+|+|++++ .+++
T Consensus 366 ~~~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~ 434 (557)
T PRK08199 366 AVQLGEVMAWLRERLPADAIITNGAGNYATWLHRFFRFRRYRTQLAPTSGSMGYGLPAAIAAKLL-----------FPER 434 (557)
T ss_pred CcCHHHHHHHHHHhCCCCeEEEECChHHHHHHHHhcCcCCCCeEECCCCccccchHHHHHHHHHh-----------CCCC
Confidence 47899999999988775 34466665433321 111 234579999999999999999 7899
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc----------ccccChhhhhhcccCCCcEEEec
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----------RATSDPQIYKKGPAFGMPGFHVD 199 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~----------~~~~~~d~~~~a~a~G~~~~~Vd 199 (339)
+|||++|||+|+++ .++|.+|+++++|+++||.||+ |++-...+ .....+|+.+++++||+++.+|+
T Consensus 435 ~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~ 512 (557)
T PRK08199 435 TVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGRVSGTDLTNPDFAALARAYGGHGETVE 512 (557)
T ss_pred cEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC
Confidence 99999999999998 8999999999999999999997 54311100 01134799999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeC
Q 019523 200 GMDVLKVREVAKEAIERARRGEGPTLVECETYRF 233 (339)
Q Consensus 200 g~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~ 233 (339)
+.+ ++. ++++++++.++|+||||.+.+.
T Consensus 513 ~~~--el~----~al~~a~~~~gp~li~v~~~~~ 540 (557)
T PRK08199 513 RTE--DFA----PAFERALASGKPALIEIRIDPE 540 (557)
T ss_pred CHH--HHH----HHHHHHHhCCCCEEEEEEeCHH
Confidence 654 554 4566666678999999998653
No 102
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.77 E-value=7.4e-19 Score=163.64 Aligned_cols=155 Identities=16% Similarity=0.150 Sum_probs=107.4
Q ss_pred CCHHHHHHHhhCC--CC-C-CCcCCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeC
Q 019523 62 VPARAVMSELFGK--AT-G-CCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFG 137 (339)
Q Consensus 62 ~~p~~~~~el~~~--~~-~-~~~g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~G 137 (339)
+.|..+++.|... .+ + .++++.|.+..+..-.......++||+++|+|+|+++| .|+++||+++|
T Consensus 26 i~~~~v~~al~e~~~~~~d~ivvsdiGc~~~~~~~~~~~~~~~~~G~alPaAiGaklA-----------~Pdr~VV~i~G 94 (277)
T PRK09628 26 VILKSIIRAIDKLGWNMDDVCVVSGIGCSGRFSSYVNCNTVHTTHGRAVAYATGIKLA-----------NPDKHVIVVSG 94 (277)
T ss_pred hHHHHHHHHHHHhcCCCCCEEEEeCcCHHHHhhccCCCCceeeccccHHHHHHHHHHH-----------CCCCeEEEEEC
Confidence 4567777777655 22 2 23566665433222222334446899999999999999 79999999999
Q ss_pred CCCcc-cchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc----------------cccChhhhhhcccCCCcEE-Ee
Q 019523 138 DGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----------------ATSDPQIYKKGPAFGMPGF-HV 198 (339)
Q Consensus 138 DG~~~-~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~----------------~~~~~d~~~~a~a~G~~~~-~V 198 (339)
||+++ +| ..++.+|+++++||++||.||+ |++....+. ...+.|+.++|+++|++++ +.
T Consensus 95 DG~f~~~g--~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~ 172 (277)
T PRK09628 95 DGDGLAIG--GNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARE 172 (277)
T ss_pred chHHHHhh--HHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEE
Confidence 99986 46 7788889999999999999996 554211000 0123477999999999985 22
Q ss_pred cCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeC
Q 019523 199 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 233 (339)
Q Consensus 199 dg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~ 233 (339)
.-.++.++.+ +++.|.+.+||+|||+.+...
T Consensus 173 ~v~~~~el~~----al~~Al~~~Gp~lIeV~~~c~ 203 (277)
T PRK09628 173 SVIDPQKLEK----LLVKGFSHKGFSFFDVFSNCH 203 (277)
T ss_pred ccCCHHHHHH----HHHHHHhCCCCEEEEEcCCCC
Confidence 2345556655 555555679999999977654
No 103
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.77 E-value=5.7e-19 Score=182.30 Aligned_cols=153 Identities=24% Similarity=0.290 Sum_probs=115.7
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------C--CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~--~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|....+. .+..+.|++..|.. + +..++++|+||+++|.|+|+++| .|+
T Consensus 397 ~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la-----------~p~ 465 (612)
T PRK07789 397 SLAPQYVIERLGEIAGPDAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVG-----------RPD 465 (612)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhcc-----------CCC
Confidence 48899999999987764 34566665433211 1 22356779999999999999999 788
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc------c----c--c---cChhhhhhcccCCC
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL------R----A--T---SDPQIYKKGPAFGM 193 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~------~----~--~---~~~d~~~~a~a~G~ 193 (339)
++|||++|||+|+|. .++|.||++++||+++||.||+ |++-...+ . . . ..+||.++|++||+
T Consensus 466 ~~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~ 543 (612)
T PRK07789 466 KEVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGC 543 (612)
T ss_pred CcEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCC
Confidence 999999999999999 8999999999999998888886 54311000 0 0 0 13689999999999
Q ss_pred cEEEecCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEee
Q 019523 194 PGFHVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYR 232 (339)
Q Consensus 194 ~~~~Vdg~d~~~v~~a~~~A~~~ar~-~~gP~lIev~t~r 232 (339)
++++|+..+ ++..++ +++.+ .++|+|||+.+.+
T Consensus 544 ~~~~V~~~~--eL~~al----~~a~~~~~~p~lIev~i~~ 577 (612)
T PRK07789 544 VGLRCEREE--DVDAVI----EKARAINDRPVVIDFVVGK 577 (612)
T ss_pred eEEEECCHH--HHHHHH----HHHHhcCCCcEEEEEEECC
Confidence 999997644 665544 44444 3799999999965
No 104
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.77 E-value=5.9e-19 Score=180.39 Aligned_cols=152 Identities=22% Similarity=0.421 Sum_probs=116.9
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccccC-------CC--cccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-------~~--~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...+++ ++..+.|+...|.. +. ..++++|+||+++|+|+|+++| .++
T Consensus 362 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la-----------~~~ 430 (558)
T TIGR00118 362 GIKPQQVIEELSRVTKDEAIVTTDVGQHQMWAAQFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVA-----------KPE 430 (558)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCccccccchhhHHHhhhhh-----------CCC
Confidence 37889999999998886 34566665433211 11 2356779999999999999999 688
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeeccccc-------------ccccChhhhhhcccCCCcEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-------------RATSDPQIYKKGPAFGMPGF 196 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~-------------~~~~~~d~~~~a~a~G~~~~ 196 (339)
++||+++|||+|+|+ .++|.||++++||+++||.||+ +++.... .....+|+.+++++||++++
T Consensus 431 ~~vv~~~GDG~f~~~--~~eL~ta~~~~l~~~~vv~NN~-~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~ 507 (558)
T TIGR00118 431 STVICITGDGSFQMN--LQELSTAVQYDIPVKILILNNR-YLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAYGIKGI 507 (558)
T ss_pred CcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEeCC-chHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHCCCeEE
Confidence 999999999999998 7899999999999999999997 3332110 11124799999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 197 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 197 ~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
+|++.+ ++.+ +++.+.+.++|+|||+.+.+
T Consensus 508 ~v~~~~--~l~~----al~~a~~~~~p~liev~~~~ 537 (558)
T TIGR00118 508 RIEKPE--ELDE----KLKEALSSNEPVLLDVVVDK 537 (558)
T ss_pred EECCHH--HHHH----HHHHHHhCCCCEEEEEEeCC
Confidence 998754 6655 44555556899999999975
No 105
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.77 E-value=1e-17 Score=171.24 Aligned_cols=199 Identities=16% Similarity=0.207 Sum_probs=137.2
Q ss_pred cccccCCCChHHHHHHHHHccC-CCCeeee--CCCCcccccccCCCHHHHHHHhhCCCCCCCcCCCC-ccccccC-CCcc
Q 019523 21 FGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGG-SMHMFSK-EHNL 95 (339)
Q Consensus 21 ~g~~~~~~G~Ea~~~~~~~~l~-~~D~i~~--~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~g~~G-~~h~~~~-~~~~ 95 (339)
.|++.++.|-=-+.+++...|+ |.|.++- .|...++.+..|-.- + +..++ ..+| +.|.-.. ....
T Consensus 103 ~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~ltgr~~-~-l~t~r--------~~ggl~G~p~~~es~~d 172 (641)
T PLN02234 103 GGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILTGRRG-K-MKTIR--------QTNGLSGYTKRRESEHD 172 (641)
T ss_pred CCCccccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHHhhhh-h-hcccc--------cCCCcCCCCCCCCCCCc
Confidence 5777777787666667766665 5676643 344444444433211 0 11111 1111 1122111 1234
Q ss_pred cccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCee-----
Q 019523 96 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA----- 170 (339)
Q Consensus 96 ~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~----- 170 (339)
..+.|++|.++++|+|+|+|.+++ +.+..|||++|||++++|.+||+|+.|+..+-++|+|+++|+..
T Consensus 173 ~~~tGslg~glS~a~GmA~a~~l~-------g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~ 245 (641)
T PLN02234 173 SFGTGHSSTTLSAGLGMAVGRDLK-------GMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTA 245 (641)
T ss_pred EECCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCccccc
Confidence 467899999999999999998887 46789999999999999999999999998787799999999852
Q ss_pred -eccccccccc----------C-----hhhhhhcccCCCcEE-EecCCCHHHHHHHHHHHHHHHHc--CCCCEEEEEEEe
Q 019523 171 -IGMSHLRATS----------D-----PQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARR--GEGPTLVECETY 231 (339)
Q Consensus 171 -i~~~~~~~~~----------~-----~d~~~~a~a~G~~~~-~Vdg~d~~~v~~a~~~A~~~ar~--~~gP~lIev~t~ 231 (339)
.+.+...-.. + .+...++++|||.++ .|||+|+.++.++++. ++. ..+|++|.++|.
T Consensus 246 q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~----~k~~~~~~P~vI~~~T~ 321 (641)
T PLN02234 246 NLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILET----LKSTKTIGPVLIHVVTE 321 (641)
T ss_pred ccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHH----HHhcCCCCCEEEEEEEe
Confidence 1111111000 0 145678999999999 9999999998876654 333 358999999999
Q ss_pred eCCCCCCCC
Q 019523 232 RFRGHSLAD 240 (339)
Q Consensus 232 r~~gh~~~D 240 (339)
+++|.+..+
T Consensus 322 KGkGv~~~E 330 (641)
T PLN02234 322 KGRGYPYAE 330 (641)
T ss_pred cCCCcchhh
Confidence 999998764
No 106
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.76 E-value=1.4e-17 Score=171.51 Aligned_cols=198 Identities=18% Similarity=0.224 Sum_probs=134.6
Q ss_pred cccccCCCChHHHHHHHHHccC-CCCeeee--CCCCcccccccCCCHHHHHHHhhCCCCCCCcCCCC-ccccccCC-Ccc
Q 019523 21 FGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGG-SMHMFSKE-HNL 95 (339)
Q Consensus 21 ~g~~~~~~G~Ea~~~~~~~~l~-~~D~i~~--~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~g~~G-~~h~~~~~-~~~ 95 (339)
.|++.++.|-=-+.+++...|+ |.|.++- .|...++.+..|.. +-+..++. .+| +.|....+ ...
T Consensus 70 ~GH~g~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~ay~~~~l~gr~--~~l~~~r~--------~g~l~g~p~~~e~~~~ 139 (677)
T PLN02582 70 GGHLGSSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILTGRR--DKMHTMRQ--------TNGLSGFTKRAESEYD 139 (677)
T ss_pred CCCcCccccHHHHHHHHHHhhCCCCCeEEEECcchHHHHHHHHccH--HHhccccc--------CCCcCCCCCCCCCCCc
Confidence 4776677776555566666665 6687654 35555555555531 11211111 111 12221111 223
Q ss_pred cccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccc
Q 019523 96 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 175 (339)
Q Consensus 96 ~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~ 175 (339)
..++|++|.+++.|+|+|+|.+++ +.+++|+|++|||++++|.+||+|+.|+.+++|+|+||+||+. +|.|.
T Consensus 140 ~~~~G~~g~~ls~a~G~A~a~~~~-------~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~-~s~~~ 211 (677)
T PLN02582 140 CFGTGHSSTTISAGLGMAVGRDLK-------GKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ-VSLPT 211 (677)
T ss_pred eeccchhhhhHHHHHHHHHHHHhc-------CCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCC-ccccc
Confidence 456799999999999999998877 4678999999999999999999999999999999999999984 22211
Q ss_pred -------ccc--c--------cC---------------------hhhh----------------hhcccCCCcEE-EecC
Q 019523 176 -------LRA--T--------SD---------------------PQIY----------------KKGPAFGMPGF-HVDG 200 (339)
Q Consensus 176 -------~~~--~--------~~---------------------~d~~----------------~~a~a~G~~~~-~Vdg 200 (339)
... . .+ ..+. .+++++|+.++ .|||
T Consensus 212 ~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDG 291 (677)
T PLN02582 212 ATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG 291 (677)
T ss_pred cccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCC
Confidence 000 0 00 0111 24789999988 9999
Q ss_pred CCHHHHHHHHHHHHHHHHcC--CCCEEEEEEEeeCCCCCCCC
Q 019523 201 MDVLKVREVAKEAIERARRG--EGPTLVECETYRFRGHSLAD 240 (339)
Q Consensus 201 ~d~~~v~~a~~~A~~~ar~~--~gP~lIev~t~r~~gh~~~D 240 (339)
+|+.++.+++ +.++.. ++|++|+++|.++.|...++
T Consensus 292 Hd~~~L~~al----~~~k~~~~~~P~vihv~T~KGkG~~~ae 329 (677)
T PLN02582 292 HNIDDLVTIL----REVKSTKTTGPVLIHVVTEKGRGYPYAE 329 (677)
T ss_pred CCHHHHHHHH----HHHHhcCCCCCEEEEEEecCCCCCChhh
Confidence 9999887755 445443 69999999999999998663
No 107
>PRK07064 hypothetical protein; Provisional
Probab=99.76 E-value=2.1e-18 Score=175.72 Aligned_cols=149 Identities=20% Similarity=0.238 Sum_probs=110.3
Q ss_pred HHHHHHhhCCCCC--CCcCCCCcc-ccc--------cCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEE
Q 019523 65 RAVMSELFGKATG--CCRGQGGSM-HMF--------SKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL 133 (339)
Q Consensus 65 ~~~~~el~~~~~~--~~~g~~G~~-h~~--------~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv 133 (339)
..++.+|...+++ ....|.|.. ..| .+...+....|+||+++|.|+|+++| .++++||
T Consensus 359 ~~~~~~l~~~l~~~~ii~~d~~~~~~~~~~~~~~~~~p~~~~~~~~g~mG~~lpaAiGa~lA-----------~p~~~vv 427 (544)
T PRK07064 359 AKLVDALRAALPRDGNWVRDVTISNSTWGNRLLPIFEPRANVHALGGGIGQGLAMAIGAALA-----------GPGRKTV 427 (544)
T ss_pred HHHHHHHHHhCCCCCEEEeCCccchHHHHHHhcCccCCCceeccCCCccccccchhhhhhhh-----------CcCCcEE
Confidence 3588888887775 234555532 222 11122333348999999999999999 7889999
Q ss_pred EEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc----------ccccChhhhhhcccCCCcEEEecCCC
Q 019523 134 AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----------RATSDPQIYKKGPAFGMPGFHVDGMD 202 (339)
Q Consensus 134 ~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~----------~~~~~~d~~~~a~a~G~~~~~Vdg~d 202 (339)
+++|||+|+|+ .++|.||.+++||+++||.||+ |++-...+ .....+||.++|++||+++.+|+..+
T Consensus 428 ~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~ 505 (544)
T PRK07064 428 GLVGDGGLMLN--LGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRRYYVELHTPDFALLAASLGLPHWRVTSAD 505 (544)
T ss_pred EEEcchHhhhh--HHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeCCHH
Confidence 99999999998 8999999999999999888886 54321111 01135799999999999999997654
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 203 VLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 203 ~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
++.. +++.+.+.++|+||||.++.
T Consensus 506 --eL~~----al~~a~~~~~p~lIeV~~~~ 529 (544)
T PRK07064 506 --DFEA----VLREALAKEGPVLVEVDMLS 529 (544)
T ss_pred --HHHH----HHHHHHcCCCCEEEEEEccc
Confidence 6555 55555567899999999863
No 108
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.76 E-value=9.4e-19 Score=177.94 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=112.5
Q ss_pred CCCHHHHHHHhhCCCCC----CCcCCCCccccccCC-----CcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcE
Q 019523 61 GVPARAVMSELFGKATG----CCRGQGGSMHMFSKE-----HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 131 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~----~~~g~~G~~h~~~~~-----~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~ 131 (339)
.++|.+++.+|...++. ....|.|+.+++... +..++.+|+||+++|+|+|+++| .+ ++
T Consensus 355 ~i~p~~~~~~l~~~l~~~~~~ii~~D~G~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA-----------~~-~r 422 (535)
T TIGR03394 355 PIAPMDIARAVNDRFARHGQMPLAADIGDCLFTAMDMDDAGLMAPGYYAGMGFGVPAGIGAQCT-----------SG-KR 422 (535)
T ss_pred CcCHHHHHHHHHHHhCCCCCEEEEEccCHHHHHHHhcCCCcEECcCccchhhhHHHHHHHHHhC-----------CC-CC
Confidence 37899999999887753 256777764443221 22356789999999999999998 34 45
Q ss_pred EEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc-----ccccChhhhhhcccCCCcEEEecCCCHHH
Q 019523 132 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL-----RATSDPQIYKKGPAFGMPGFHVDGMDVLK 205 (339)
Q Consensus 132 vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~-----~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~ 205 (339)
+|+++|||+|+|+ .++|.||++++||+++||.||+ |++-...+ .....+||.++|++||+++.+|+..+ +
T Consensus 423 ~v~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~--e 498 (535)
T TIGR03394 423 ILTLVGDGAFQMT--GWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDLDDWRFADMAAGMGGDGVRVRTRA--E 498 (535)
T ss_pred eEEEEeChHHHhH--HHHHHHHHHcCCCcEEEEEECCccceeehhccCCCcccCCCCCHHHHHHHcCCCceEeCCHH--H
Confidence 5889999999998 8999999999999999999885 54422111 11235799999999999999998654 6
Q ss_pred HHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 019523 206 VREVAKEAIERARRG-EGPTLVECETY 231 (339)
Q Consensus 206 v~~a~~~A~~~ar~~-~gP~lIev~t~ 231 (339)
+..+ ++++.+. ++|+|||+.+.
T Consensus 499 L~~a----l~~a~~~~~~p~lIev~i~ 521 (535)
T TIGR03394 499 LAAA----LDKAFATRGRFQLIEAMLP 521 (535)
T ss_pred HHHH----HHHHHhcCCCeEEEEEECC
Confidence 5554 4444443 45899999874
No 109
>PRK05261 putative phosphoketolase; Provisional
Probab=99.76 E-value=1e-17 Score=173.23 Aligned_cols=205 Identities=19% Similarity=0.235 Sum_probs=155.4
Q ss_pred cccccccCCCChHHHHHHHHHccCCC--CeeeeCCCCcccccc------cC--------CCHHHH-HHHhhCCCCCCCcC
Q 019523 19 KMFGFVHLYNGQEAVSTGFIKLLKKE--DSVVSTYRDHVHALS------KG--------VPARAV-MSELFGKATGCCRG 81 (339)
Q Consensus 19 ~~~g~~~~~~G~Ea~~~~~~~~l~~~--D~i~~~~R~~~~~l~------~g--------~~p~~~-~~el~~~~~~~~~g 81 (339)
+..|++.++.|+-.+.+.+..++++. |.++-.--+|+..+. .| ++..+- |..++.+....
T Consensus 47 r~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~p--- 123 (785)
T PRK05261 47 RLLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSFP--- 123 (785)
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccCC---
Confidence 45799999999999999999999876 666666667775532 34 222221 33344443211
Q ss_pred CCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchH---HHHHHHHHhCCC
Q 019523 82 QGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF---FECLNMAALWKL 158 (339)
Q Consensus 82 ~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~---~eal~~A~~~~L 158 (339)
.+.+.|....-.++....|++|++++.|+|+|+. +++.+|+|++|||++.+|.+ +++..++...++
T Consensus 124 gg~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~-----------~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~ 192 (785)
T PRK05261 124 GGIPSHAAPETPGSIHEGGELGYSLSHAYGAAFD-----------NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATD 192 (785)
T ss_pred CCcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc-----------CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccC
Confidence 1334566544456777889999999999999987 68889999999999999863 666666666667
Q ss_pred C-EEEEEEcCCeeeccccccc-ccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHH-----------HcC---CC
Q 019523 159 P-IVFVVENNLWAIGMSHLRA-TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERA-----------RRG---EG 222 (339)
Q Consensus 159 p-vi~vv~NN~~~i~~~~~~~-~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~a-----------r~~---~g 222 (339)
. |+.|+++|+|+|+.++..+ ....++.+++++|||+.+.|||+|+.++++++++|++.+ |.+ .+
T Consensus 193 g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~ 272 (785)
T PRK05261 193 GAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTR 272 (785)
T ss_pred CCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 6 7888889999999998765 345789999999999999999999999998876666644 334 58
Q ss_pred CE--EEEEEEeeCCCCC
Q 019523 223 PT--LVECETYRFRGHS 237 (339)
Q Consensus 223 P~--lIev~t~r~~gh~ 237 (339)
|+ +|.++|.+++|-+
T Consensus 273 P~wp~Ii~rT~kG~g~p 289 (785)
T PRK05261 273 PRWPMIVLRTPKGWTGP 289 (785)
T ss_pred CCceEEEEECCccCCCC
Confidence 99 9999999998844
No 110
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.76 E-value=1.9e-18 Score=176.53 Aligned_cols=153 Identities=17% Similarity=0.171 Sum_probs=113.2
Q ss_pred CCCHHHHHHHhhCCCC---C-CCcCCCCcccccc--------CC-CcccccccccccchHHHHHHHHHHHHhhhhhhccC
Q 019523 61 GVPARAVMSELFGKAT---G-CCRGQGGSMHMFS--------KE-HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD 127 (339)
Q Consensus 61 g~~p~~~~~el~~~~~---~-~~~g~~G~~h~~~--------~~-~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~ 127 (339)
.+++..++.+|...++ + .+..++|+...|. +. ...++++|+||+++|+|+|+++|
T Consensus 365 ~l~~~~~~~~l~~~l~~~~~~ivv~d~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala------------ 432 (554)
T TIGR03254 365 PMNYHGALEAIRDVLKDNPDIYLVNEGANTLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVE------------ 432 (554)
T ss_pred CcCHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhc------------
Confidence 4889999999888774 2 2345555432221 11 12356779999999999999998
Q ss_pred CCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccc--------ccc-ccChhhhhhcccCCCcEEE
Q 019523 128 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH--------LRA-TSDPQIYKKGPAFGMPGFH 197 (339)
Q Consensus 128 ~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~--------~~~-~~~~d~~~~a~a~G~~~~~ 197 (339)
++++||+++|||+|+|+ .++|.||+++++|+++||.||+ |...... ... ...+||.++|++||+++++
T Consensus 433 ~~~~vv~i~GDGsf~m~--~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~ 510 (554)
T TIGR03254 433 TGKPVVALEGDSAFGFS--GMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAFGGVGYN 510 (554)
T ss_pred CCCcEEEEEcCchhccc--HHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHCCCeEEE
Confidence 37889999999999999 8999999999999999999996 3211100 001 1457999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeC
Q 019523 198 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 233 (339)
Q Consensus 198 Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~ 233 (339)
|+.. .++.++ ++++.+.++|+||||.+.+.
T Consensus 511 v~~~--~el~~a----l~~a~~~~~p~lIev~id~~ 540 (554)
T TIGR03254 511 VTTP--DELKAA----LNEALASGKPTLINAVIDPS 540 (554)
T ss_pred eCCH--HHHHHH----HHHHHhCCCCEEEEEEECCC
Confidence 9754 466554 44555678999999998643
No 111
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.76 E-value=1.3e-18 Score=178.69 Aligned_cols=153 Identities=21% Similarity=0.302 Sum_probs=115.4
Q ss_pred CCCHHHHHHHhhCCCCC-------CCcCCCCccccccC-------CCc--ccccccccccchHHHHHHHHHHHHhhhhhh
Q 019523 61 GVPARAVMSELFGKATG-------CCRGQGGSMHMFSK-------EHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLK 124 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~-------~~~g~~G~~h~~~~-------~~~--~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~ 124 (339)
.++|..++.+|...+++ ++..+.|+...|.. +.. .++++|+||+++|+|+|+++|
T Consensus 364 ~l~~~~~~~~l~~~l~~~~~~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la--------- 434 (586)
T PRK06276 364 PIKPQRVIKELMEVLREIDPSKNTIITTDVGQNQMWMAHFFKTSAPRSFISSGGLGTMGFGFPAAIGAKVA--------- 434 (586)
T ss_pred CcCHHHHHHHHHHhccccCCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCccccccchhHHHhhhhh---------
Confidence 37888899999887764 24566675433311 122 245679999999999999999
Q ss_pred ccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccc---------cc--ccChhhhhhcccCC
Q 019523 125 EADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL---------RA--TSDPQIYKKGPAFG 192 (339)
Q Consensus 125 ~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~---------~~--~~~~d~~~~a~a~G 192 (339)
.++++|||++|||+|+|+ .++|.||+++++|+++||.||+ |++....+ .. ...+||.+++++||
T Consensus 435 --~p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G 510 (586)
T PRK06276 435 --KPDANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQSEVHLGETPDFVKLAESYG 510 (586)
T ss_pred --cCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCC
Confidence 678899999999999999 8999999999999999999886 54321100 00 13478999999999
Q ss_pred CcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 193 MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 193 ~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
+++++|+.. +++.+ |++++.+.++|+||||.+.+
T Consensus 511 ~~~~~v~~~--~el~~----al~~a~~~~~p~lIeV~i~~ 544 (586)
T PRK06276 511 VKADRVEKP--DEIKE----ALKEAIKSGEPYLLDIIIDP 544 (586)
T ss_pred CeEEEECCH--HHHHH----HHHHHHhCCCCEEEEEEecc
Confidence 999999754 46655 45555567899999999864
No 112
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.76 E-value=2.6e-17 Score=172.12 Aligned_cols=209 Identities=21% Similarity=0.217 Sum_probs=143.4
Q ss_pred ccccccCCCCh-HHHHHHHHHccCC------CCeeeeCCCCccccc------ccC-CCHHHHHHHhhCCCCCCCcCCCCc
Q 019523 20 MFGFVHLYNGQ-EAVSTGFIKLLKK------EDSVVSTYRDHVHAL------SKG-VPARAVMSELFGKATGCCRGQGGS 85 (339)
Q Consensus 20 ~~g~~~~~~G~-Ea~~~~~~~~l~~------~D~i~~~~R~~~~~l------~~g-~~p~~~~~el~~~~~~~~~g~~G~ 85 (339)
+.|+..++.+- +-..++....|+. +|+|++. +|+..+ ..| ++.+++ ..++...++ .+-.+.
T Consensus 106 ~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~sk--GHasp~lYA~~~l~G~l~~e~L-~~fR~~~~g--~gl~sy 180 (891)
T PRK09405 106 LGGHISSFASSATLYEVGFNHFFRAPNEPHGGDLVFFQ--GHASPGIYARAFLEGRLTEEQL-DNFRQEVDG--KGLSSY 180 (891)
T ss_pred CCCcccChHHHHHHHHHHHHhhCCCCCCCCCCCEEEEC--chHHHHHHHHHHHcCCCCHHHH-HHhcCCCCC--CCCCCC
Confidence 33554443332 2233334455664 5877643 555432 245 444443 344433211 122233
Q ss_pred cccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEEE
Q 019523 86 MHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVV 164 (339)
Q Consensus 86 ~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~vv 164 (339)
.|.+..+-.+...+++||.|++.|+|+|++.||...+...+..+++|+|++|||.+++|.++|++.+|++++|. +++||
T Consensus 181 Php~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~iv 260 (891)
T PRK09405 181 PHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVI 260 (891)
T ss_pred CCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEE
Confidence 34333222233456899999999999999988653221122457899999999999999999999999999998 99999
Q ss_pred EcCCeeecccccccc-cChhhhhhcccCCCcEEEe--------------------------c------------------
Q 019523 165 ENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHV--------------------------D------------------ 199 (339)
Q Consensus 165 ~NN~~~i~~~~~~~~-~~~d~~~~a~a~G~~~~~V--------------------------d------------------ 199 (339)
++|...+..++..-. ...++.++++++||.++.| |
T Consensus 261 D~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~f 340 (891)
T PRK09405 261 NCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHF 340 (891)
T ss_pred ECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHh
Confidence 999878887766422 2468999999999999999 4
Q ss_pred -------------------------CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCC
Q 019523 200 -------------------------GMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH 236 (339)
Q Consensus 200 -------------------------g~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh 236 (339)
|+|+.+|++|+..|.+ ..++|++|.++|.+++|.
T Consensus 341 fg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~---~~~~PtvIia~TvkG~G~ 399 (891)
T PRK09405 341 FGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVE---HKGQPTVILAKTIKGYGM 399 (891)
T ss_pred cCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHh---CCCCCEEEEEeceecCCC
Confidence 9999999987765543 246899999999999998
No 113
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.74 E-value=5.2e-18 Score=173.79 Aligned_cols=151 Identities=20% Similarity=0.208 Sum_probs=111.9
Q ss_pred CCCHHHHHHHhhCCCC---C-CCcCCCCccccc--------cCC-CcccccccccccchHHHHHHHHHHHHhhhhhhccC
Q 019523 61 GVPARAVMSELFGKAT---G-CCRGQGGSMHMF--------SKE-HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD 127 (339)
Q Consensus 61 g~~p~~~~~el~~~~~---~-~~~g~~G~~h~~--------~~~-~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~ 127 (339)
.++|..++.+|...++ + .+..++|+...+ .+. +..++++|+||+++|+|+|+++|
T Consensus 372 ~l~~~~~~~~l~~~l~~~~d~iv~~~~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la------------ 439 (569)
T PRK09259 372 PMNFYNALGAIRDVLKENPDIYLVNEGANTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE------------ 439 (569)
T ss_pred CcCHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhc------------
Confidence 4788889888887763 2 233444432222 111 12356779999999999999998
Q ss_pred CCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeee--cccc------c---cc-ccChhhhhhcccCCCcE
Q 019523 128 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI--GMSH------L---RA-TSDPQIYKKGPAFGMPG 195 (339)
Q Consensus 128 ~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i--~~~~------~---~~-~~~~d~~~~a~a~G~~~ 195 (339)
++++||+++|||+|+|. .++|.||+++++|+++||.||+ ++ +... . .. .+++||.++|++||+++
T Consensus 440 ~~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~ 516 (569)
T PRK09259 440 TGKPVVAIEGDSAFGFS--GMEVETICRYNLPVTVVIFNNG-GIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAFGGVG 516 (569)
T ss_pred CCCcEEEEecCcccccc--HHHHHHHHHcCCCEEEEEEeCh-hHHHHHHHHhhcCCCccccccCCCCCHHHHHHHCCCeE
Confidence 37789999999999999 8999999999999999999997 32 1110 0 01 13679999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 196 FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 196 ~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
++|+..+ ++.+ +++++.+.++|+||||.+.+
T Consensus 517 ~~v~~~~--el~~----al~~a~~~~~p~lIev~id~ 547 (569)
T PRK09259 517 YNVTTPD--ELRH----ALTEAIASGKPTLINVVIDP 547 (569)
T ss_pred EEECCHH--HHHH----HHHHHHhCCCCEEEEEEECC
Confidence 9997654 6555 45555567899999999864
No 114
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.74 E-value=5.8e-18 Score=154.90 Aligned_cols=163 Identities=13% Similarity=0.153 Sum_probs=108.8
Q ss_pred cccCCCHHHHHHHhhCCCC--C--CCcCCCCccccccCC-------Cc----ccccccccccchHHHHHHHHHHHHhhhh
Q 019523 58 LSKGVPARAVMSELFGKAT--G--CCRGQGGSMHMFSKE-------HN----LLGGFAFIGEGIPVATGAAFTSKYRREV 122 (339)
Q Consensus 58 l~~g~~p~~~~~el~~~~~--~--~~~g~~G~~h~~~~~-------~~----~~~~~g~lG~~~p~AiG~a~A~k~~~~~ 122 (339)
+.-|+.-..+++++...++ + ++..+.|.+.+|... .. ...+.++||+++|.|+|+++|....
T Consensus 7 ~c~gc~~~~~~~~l~~~l~~p~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~--- 83 (237)
T cd02018 7 ACAGCGEVTAVRVVLAALPAPEDTVIANSTGCSSVYASTAPFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDRE--- 83 (237)
T ss_pred cCcCCCcHHHHHHHHHHhCCCCCEEEEeCCCccceecccCcCcccCCCeeeccccCHHHHHHHHHHHHHhhcccccc---
Confidence 3344544455555555554 2 244555554444211 11 1124589999999999999872211
Q ss_pred hhccCCCcEEEEEeCCCCcc-cchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc----------------cccChhh
Q 019523 123 LKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----------------ATSDPQI 184 (339)
Q Consensus 123 ~~~~~~~~~vv~~~GDG~~~-~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~----------------~~~~~d~ 184 (339)
..++++|||+.|||+++ +| .+++.++.++++|+++||.||+ |++...... ....+|+
T Consensus 84 ---~~p~~~Vv~i~GDG~~~~~g--~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~ 158 (237)
T cd02018 84 ---LDKKKDVVVIGGDGATYDIG--FGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDL 158 (237)
T ss_pred ---cCCCCcEEEEeCchHHHhcc--HHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCH
Confidence 14688999999999987 78 8899999999999999999996 443210110 1134799
Q ss_pred hhhcccCCCcEEE-ecCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEee
Q 019523 185 YKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARR-GEGPTLVECETYR 232 (339)
Q Consensus 185 ~~~a~a~G~~~~~-Vdg~d~~~v~~a~~~A~~~ar~-~~gP~lIev~t~r 232 (339)
.++|++||+++++ +.-.++.++.+ |++.+.+ .++|+||++.+..
T Consensus 159 ~~iA~a~G~~~~~~~~v~~~~~l~~----al~~al~~~~GP~lI~v~i~c 204 (237)
T cd02018 159 VLIAATHGCVYVARLSPALKKHFLK----VVKEAISRTDGPTFIHAYTPC 204 (237)
T ss_pred HHHHHHCCCCEEEEEccCCHHHHHH----HHHHHHhcCCCCEEEEEeCCC
Confidence 9999999999985 22234556655 5555555 7999999998643
No 115
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.74 E-value=1.8e-17 Score=155.92 Aligned_cols=136 Identities=23% Similarity=0.244 Sum_probs=99.3
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCc-ccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccc
Q 019523 97 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 174 (339)
Q Consensus 97 ~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~-~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~ 174 (339)
+..++||+++|+|+|+++| +|++.|||+.|||++ ++| .++|.+|+++++|+++||.||+ |++...
T Consensus 67 ~~~g~mG~alpaAiGaklA-----------~pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~g 133 (301)
T PRK05778 67 GLHTLHGRAIAFATGAKLA-----------NPDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKG 133 (301)
T ss_pred ccchhhccHHHHHHHHHHH-----------CCCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccC
Confidence 3448899999999999999 789999999999997 588 8999999999999999999996 544221
Q ss_pred ccc----------------cccChhhhhhcccCCCcEE-EecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee--CCC
Q 019523 175 HLR----------------ATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR--FRG 235 (339)
Q Consensus 175 ~~~----------------~~~~~d~~~~a~a~G~~~~-~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r--~~g 235 (339)
... ....+|+.++|+++|+.++ ++...++.++.++++ +|.+.+||+|||+.+.- .++
T Consensus 134 Q~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~----~A~~~~GpalIeV~~~C~~~~~ 209 (301)
T PRK05778 134 QASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIK----KAISHKGFAFIDVLSPCVTFNG 209 (301)
T ss_pred cccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHH----HHHhCCCCEEEEEcCCCCCCCC
Confidence 100 0124689999999999987 444456667766554 45567899999985543 333
Q ss_pred CCCCCCCCCCCHHHHHHH
Q 019523 236 HSLADPDELRDPAEKARY 253 (339)
Q Consensus 236 h~~~D~~~yr~~~e~~~~ 253 (339)
... ..+++.+..+|
T Consensus 210 ~~~----~~~~~~~~~~~ 223 (301)
T PRK05778 210 RNT----STKSPAYMREY 223 (301)
T ss_pred cCC----cccCHHHHHHH
Confidence 322 23455555555
No 116
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.72 E-value=2.5e-17 Score=153.39 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=94.9
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCC-CcccchHHHHHHHHHhCCCCEEEEEEcCC-eeec
Q 019523 95 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG-TCNNGQFFECLNMAALWKLPIVFVVENNL-WAIG 172 (339)
Q Consensus 95 ~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG-~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~ 172 (339)
.....++||.++|+|+|+++| +|+++||+++||| ++++| .++|.+|+++++|+++||.||+ |++.
T Consensus 54 ~~~~~~~~G~alp~A~GaklA-----------~Pd~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~ygmt 120 (279)
T PRK11866 54 TYGIHGIHGRVLPIATGVKWA-----------NPKLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVYGLT 120 (279)
T ss_pred CCCcccccccHHHHHHHHHHH-----------CCCCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhhhhh
Confidence 345578899999999999999 7899999999999 69999 9999999999999999999996 5443
Q ss_pred ccccccc----------------cChhhhhhcccCCCcEE-EecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 173 MSHLRAT----------------SDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 173 ~~~~~~~----------------~~~d~~~~a~a~G~~~~-~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
....... ...|+.++|+++|++++ +....++.++.++ +++|.+.+||+|||+...-
T Consensus 121 ggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~----l~~Al~~~Gps~I~v~~pC 193 (279)
T PRK11866 121 TGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEI----IKEAIKHKGFSFIDVLSPC 193 (279)
T ss_pred cccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHH----HHHHHhCCCCEEEEEeCCC
Confidence 2111000 01389999999999877 4466787777664 4555567999999996653
No 117
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.72 E-value=3e-17 Score=153.74 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=91.7
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCC-cccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccc
Q 019523 97 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT-CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 174 (339)
Q Consensus 97 ~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~-~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~ 174 (339)
+..++||+++|+|+|+++| +|+++||+++|||+ +++| .++|.+|+++++|+++||.||+ |++...
T Consensus 66 ~~~g~mG~alpaAiGaklA-----------~Pd~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGmt~~ 132 (286)
T PRK11867 66 GFHTIHGRALAIATGLKLA-----------NPDLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGLTKG 132 (286)
T ss_pred chhhhhhcHHHHHHHHHHh-----------CCCCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhhhcC
Confidence 3348999999999999999 78999999999995 8899 8999999999999999999885 554221
Q ss_pred cccc----------------ccChhhhhhcccCCCcEE-EecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 175 HLRA----------------TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 175 ~~~~----------------~~~~d~~~~a~a~G~~~~-~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
.... ....++.++|.++|+..+ ++...++.++.++ ++++.+.+||+|||+.+.-
T Consensus 133 q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~a----l~~Al~~~Gp~lIev~~~C 203 (286)
T PRK11867 133 QYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTEL----IKAAINHKGFSFVEILQPC 203 (286)
T ss_pred ccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHH----HHHHHhCCCCEEEEEeCCC
Confidence 1100 012578899999999887 4444566676654 4555567899999997654
No 118
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.72 E-value=4.8e-17 Score=157.01 Aligned_cols=155 Identities=14% Similarity=0.193 Sum_probs=112.9
Q ss_pred CCHHHHHHHhhCCCCC--CCcCCCCccc--ccc---C-----CCcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 62 VPARAVMSELFGKATG--CCRGQGGSMH--MFS---K-----EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 62 ~~p~~~~~el~~~~~~--~~~g~~G~~h--~~~---~-----~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
++++++++.+...++. .+..+.|... ++. . +..+. ..|+||+++|+|+|+++| .++
T Consensus 172 ~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~~~~~~~~~~~~~f~-~~GsMG~a~p~AlG~ala-----------~p~ 239 (361)
T TIGR03297 172 MTREEAIAAILDHLPDNTVIVSTTGKTSRELYELRDRIGQGHARDFL-TVGSMGHASQIALGLALA-----------RPD 239 (361)
T ss_pred CCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHhhcccccCCCCceE-eechhhhHHHHHHHHHHH-----------CCC
Confidence 7889999999888764 3445555321 121 1 12222 358999999999999999 688
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCC-CEEEEEEcCC-eeecccccccccChhhhhhcccCCC-cEEEecCCCHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGM-PGFHVDGMDVLKV 206 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~L-pvi~vv~NN~-~~i~~~~~~~~~~~d~~~~a~a~G~-~~~~Vdg~d~~~v 206 (339)
++|||+.|||+|.|. .++|.+++++++ |+++||.||+ |+............|+.++|++||+ .+++|+ +..++
T Consensus 240 r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~G~~~~~~v~--~~~eL 315 (361)
T TIGR03297 240 QRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHLDFAQIAKACGYAKVYEVS--TLEEL 315 (361)
T ss_pred CCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCCCHHHHHHHCCCceEEEeC--CHHHH
Confidence 999999999999988 789999999997 7999999997 3321111111235799999999997 577775 45566
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEEeeCCCC
Q 019523 207 REVAKEAIERARRGEGPTLVECETYRFRGH 236 (339)
Q Consensus 207 ~~a~~~A~~~ar~~~gP~lIev~t~r~~gh 236 (339)
.+++ +.+++.++|+|||+++....+-
T Consensus 316 ~~al----~~a~~~~gp~lIeV~v~~g~~~ 341 (361)
T TIGR03297 316 ETAL----TAASSANGPRLIEVKVRPGSRA 341 (361)
T ss_pred HHHH----HHHHhCCCcEEEEEEecCCCcc
Confidence 6654 4455678999999999765543
No 119
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.72 E-value=6.8e-18 Score=172.91 Aligned_cols=151 Identities=17% Similarity=0.093 Sum_probs=111.3
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCccccc-----cCC--C--cccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHMF-----SKE--H--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~~-----~~~--~--~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|..++.+|...+++ .+..+.|+.+.+ ... . ....+.+.||+++|+|+|+++| ++
T Consensus 375 ~i~~~~~~~~l~~~l~~~~iv~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala------------~~ 442 (568)
T PRK07449 375 TFTEAKVAAALADLLPEGGQLFVGNSLPVRDVDAFGQLPDGYPVYSNRGASGIDGLLSTAAGVARA------------SA 442 (568)
T ss_pred CccHHHHHHHHHHhCCCCCeEEEECcHHHHHHHHccCcCCCceEEecCCccchhhHHHHHHHHHhc------------CC
Confidence 37788899999888774 233455543222 111 1 1234568899999999999998 47
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eee-cccccc-----------cccChhhhhhcccCCCcEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAI-GMSHLR-----------ATSDPQIYKKGPAFGMPGF 196 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i-~~~~~~-----------~~~~~d~~~~a~a~G~~~~ 196 (339)
++|||++|||+|+|+ .++|.||+++++|+++||.||+ |++ +..... ....+||.++|++||++++
T Consensus 443 ~~vv~i~GDGsf~~~--~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~ 520 (568)
T PRK07449 443 KPTVALIGDLSFLHD--LNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVFERFFGTPHGVDFAHAAAMYGLEYH 520 (568)
T ss_pred CCEEEEechHHhhcC--cHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCcchhhHhhcCCCCCCHHHHHHHcCCCcc
Confidence 789999999999998 7899999999999999998885 552 111100 1135789999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 019523 197 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 231 (339)
Q Consensus 197 ~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~ 231 (339)
+|+..+ ++.+ +++++.+.++|+||||.+.
T Consensus 521 ~V~~~~--eL~~----al~~a~~~~~p~lIev~id 549 (568)
T PRK07449 521 RPETWA--ELEE----ALADALPTPGLTVIEVKTN 549 (568)
T ss_pred CCCCHH--HHHH----HHHHHhcCCCCEEEEEeCC
Confidence 997644 6555 5555556789999999874
No 120
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.71 E-value=2.8e-17 Score=152.98 Aligned_cols=119 Identities=20% Similarity=0.150 Sum_probs=93.1
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcc-cchHHHHHHHHHhCCCCEEEEEEcCC-eeeccc
Q 019523 97 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 174 (339)
Q Consensus 97 ~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~-~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~ 174 (339)
+..+.||.++|+|+|+++| +|++.||+++|||++. .| .++|.+|+++++|+++||.||+ |++...
T Consensus 57 ~~~~~mG~alp~AiGaklA-----------~pd~~VVai~GDG~~~~iG--~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~ 123 (280)
T PRK11869 57 GFHTLHGRAIPAATAVKAT-----------NPELTVIAEGGDGDMYAEG--GNHLIHAIRRNPDITVLVHNNQVYGLTKG 123 (280)
T ss_pred CCCcccccHHHHHHHHHHH-----------CCCCcEEEEECchHHhhCc--HHHHHHHHHhCcCcEEEEEECHHHhhhcc
Confidence 4456799999999999999 7899999999999988 67 8999999999999999999995 554211
Q ss_pred ccc----------------cccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 175 HLR----------------ATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 175 ~~~----------------~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
... .....|+.++|+++|++++.. ...++.++.+++ ++|.+.+||+|||+.++-
T Consensus 124 Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i----~~Al~~~Gp~lIeV~~pC 194 (280)
T PRK11869 124 QASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEIL----KEAIKHKGLAIVDIFQPC 194 (280)
T ss_pred eecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHH----HHHHhCCCCEEEEEECCC
Confidence 110 012358999999999998863 355777776654 455567999999997654
No 121
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=2.7e-16 Score=155.23 Aligned_cols=136 Identities=26% Similarity=0.372 Sum_probs=113.6
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEEEEcCCeeec
Q 019523 94 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIG 172 (339)
Q Consensus 94 ~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~vv~NN~~~i~ 172 (339)
...-++|++|++++.|+|+|++.+++. ..+.+|+|++|||+.++|.++|++++|+.|+|. +|+|.+||+.+++
T Consensus 112 ~v~v~TG~lgQgis~a~GmA~~~k~~~------k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~ 185 (632)
T KOG0523|consen 112 GVEVATGPLGQGISNAVGMAYAGKHLG------KASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISID 185 (632)
T ss_pred CceeccCCccchHHHHHHHHHHHHhhc------cccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccCC
Confidence 345577999999999999999999885 347899999999999999999999999999999 7788888887887
Q ss_pred ccccccccChhhhh-hcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCC
Q 019523 173 MSHLRATSDPQIYK-KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 239 (339)
Q Consensus 173 ~~~~~~~~~~d~~~-~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~ 239 (339)
..+.... ..++.+ +.++|||.++.|++.|++++..++..|. ...++|+.|-+.|..++|....
T Consensus 186 g~t~~~~-~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~---~~k~kpt~i~~~t~~g~G~~~i 249 (632)
T KOG0523|consen 186 GATSLGF-DEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAK---SVKGKPTAIKATTFIGRGSPYI 249 (632)
T ss_pred CCCcccc-cccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhh---hccCCceeeeeeeeeecCcccc
Confidence 7766553 456666 9999999999999999877766555543 2357899999999999887544
No 122
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.70 E-value=1.8e-17 Score=157.34 Aligned_cols=154 Identities=21% Similarity=0.303 Sum_probs=127.2
Q ss_pred CCHHHHHHHhhCCCCCC-----CcCCCCccccccCC---------CcccccccccccchHHHHHHHHHHHHhhhhhhccC
Q 019523 62 VPARAVMSELFGKATGC-----CRGQGGSMHMFSKE---------HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD 127 (339)
Q Consensus 62 ~~p~~~~~el~~~~~~~-----~~g~~G~~h~~~~~---------~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~ 127 (339)
++|+.++.+|....++. ...-.|.++||... +..+++.|+||+|+|+|||+..| +
T Consensus 472 ikPQ~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA-----------~ 540 (675)
T KOG4166|consen 472 IKPQYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVA-----------N 540 (675)
T ss_pred cChHHHHHHHHHhccCcCceEEEeccccHHHHHHHHHhcccCccceeecCCccccccCcchhhccccc-----------C
Confidence 78999999998877652 34456778888542 34689999999999999999999 8
Q ss_pred CCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccc------------cChhhhhhcccCCCcE
Q 019523 128 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT------------SDPQIYKKGPAFGMPG 195 (339)
Q Consensus 128 ~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~------------~~~d~~~~a~a~G~~~ 195 (339)
|+.+||-+-||++|.|. .++|.++.+.++||.+++.||+ ..++..+.|. .+|++.++|.|+|+++
T Consensus 541 P~~iViDIDGDaSF~Mt--~~ELat~rq~~~PVKiLiLNNe-eqGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGika 617 (675)
T KOG4166|consen 541 PDAIVIDIDGDASFIMT--VQELATIRQENLPVKILILNNE-EQGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGIKA 617 (675)
T ss_pred cccEEEeccCCceeeee--hHhhhhhhhcCCceEEEEecch-hhhhHHHHHHHHHHhhhccccccCccHHHHHHhcCCch
Confidence 99999999999999999 8999999999999999999997 5555544331 4789999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCC
Q 019523 196 FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 235 (339)
Q Consensus 196 ~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~g 235 (339)
.+|.... + ++++++.....+||+|+||.|.....
T Consensus 618 lRV~K~e--d----L~~k~keflsTkGPvLleV~v~~keh 651 (675)
T KOG4166|consen 618 LRVTKKE--D----LREKIKEFLSTKGPVLLEVIVPHKEH 651 (675)
T ss_pred heeehHH--H----HHHHHHHHhCCCCCeEEEEEccCccc
Confidence 9997553 4 45566777789999999998876443
No 123
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.69 E-value=1e-15 Score=143.47 Aligned_cols=187 Identities=19% Similarity=0.154 Sum_probs=137.7
Q ss_pred CCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcc-cchHHHHHHHHHhCCCCEEEEEEcCCee
Q 019523 92 EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWA 170 (339)
Q Consensus 92 ~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~-~g~~~eal~~A~~~~Lpvi~vv~NN~~~ 170 (339)
++.+....+.+|.+.++|.|++.|.+.+ +++..||++.|||++. .| .++|.-|...+.++++||.||+..
T Consensus 61 ~~~~~~~~~~fg~~~a~a~Gi~~a~~~~-------~~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~ni~~ivlDNe~Y 131 (299)
T PRK11865 61 AWNVPWIHVAFENAAAVASGIERAVKAL-------GKKVNVVAIGGDGGTADIG--FQSLSGAMERGHNILYLMYDNEAY 131 (299)
T ss_pred ccccccchhhhcchHHHHHHHHHHHHHh-------cCCCeEEEEeCCchHhhcc--HHHHHHHHHcCCCeEEEEECCccc
Confidence 4556777889999999999999998765 3567899999999986 77 799999999999999999999743
Q ss_pred eccccccc----------------------ccChhhhhhcccCCCcEE-EecCCCHHHHHHHHHHHHHHHHcCCCCEEEE
Q 019523 171 IGMSHLRA----------------------TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVE 227 (339)
Q Consensus 171 i~~~~~~~----------------------~~~~d~~~~a~a~G~~~~-~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIe 227 (339)
.+|..|.. ....|+..++.++|++++ +++-.++.++.+++++| .+.+||+||+
T Consensus 132 ~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A----~~~~Gps~I~ 207 (299)
T PRK11865 132 MNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKA----KEVEGPAYIQ 207 (299)
T ss_pred cCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHH----HhCCCCEEEE
Confidence 33322211 124578889999999988 77778988887755554 4578999999
Q ss_pred EEEee--CCCCCCCC--------------------CCCCC---CHHHHHHHhhCChHHHHHHHHHHcCcccHHHHHHHHH
Q 019523 228 CETYR--FRGHSLAD--------------------PDELR---DPAEKARYAARDPITALKKYLIESSLASEAELKAIEK 282 (339)
Q Consensus 228 v~t~r--~~gh~~~D--------------------~~~yr---~~~e~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~ 282 (339)
+.++- ++++...+ +..++ .+..++ -+.+.|++.|-+.+-++.+|++|+++++++
T Consensus 208 v~sPC~~~~~~~~~~~~~~~klAvetg~~plye~~~g~~~~~~~~~~ld-~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~ 286 (299)
T PRK11865 208 VLQPCPTGWGFPPEKTIEIGRLAVETGYWPLFEIENGKFKITYEPLHLD-RRTRKPIEEYLKVQGRFKHLTEEDIEILQK 286 (299)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHhcCceeEEEEECCeeccCCCccccc-ccCCCCHHHHHhhCcchhcCCHHHHHHHHH
Confidence 96554 44443321 11111 111111 012568888988888999999999999999
Q ss_pred HHHHHHHHHH
Q 019523 283 KIDEVVEDAV 292 (339)
Q Consensus 283 ~~~~~v~~a~ 292 (339)
++++.++...
T Consensus 287 ~v~~~~~~~~ 296 (299)
T PRK11865 287 YIDEKWKELG 296 (299)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 124
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.68 E-value=4.3e-16 Score=145.52 Aligned_cols=119 Identities=19% Similarity=0.250 Sum_probs=88.8
Q ss_pred cccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcc-cchHHHHHHHHHhCCCCEEEEEEcCC-eeecc
Q 019523 96 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGM 173 (339)
Q Consensus 96 ~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~-~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~ 173 (339)
.+..+.||+++|+|+|+++| +|+++|||++|||++. +| .++|.+|+++++||++||.||+ |++..
T Consensus 49 ~~~~t~mG~alPaAiGaklA-----------~Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~ 115 (287)
T TIGR02177 49 NGFHGLHGRALPVATGIKLA-----------NPHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTK 115 (287)
T ss_pred CCcccccccHHHHHHHHHHH-----------CCCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhh
Confidence 33445689999999999999 7999999999999975 88 8999999999999999999996 54432
Q ss_pred cccc-c-----------------ccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 174 SHLR-A-----------------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 174 ~~~~-~-----------------~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
..+. . ..++++..+|.++|+.+...- .++.++.+++ ++|.+.+||+||++.+.-
T Consensus 116 gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai----~~Al~~~GpslIeV~~pC 187 (287)
T TIGR02177 116 GQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEII----KEAINHKGYALVDILQPC 187 (287)
T ss_pred cccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHH----HHHHhCCCCEEEEEeCCC
Confidence 1110 0 014457778888887666522 5666766654 445567999999997653
No 125
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.67 E-value=3.5e-16 Score=160.97 Aligned_cols=162 Identities=22% Similarity=0.178 Sum_probs=122.7
Q ss_pred CCcccccccCCCHHHHHHHhhCCCCC--CCcCCCCccccccC-CCcccccccccccchHHHHHHHHHHHHhhhhhhccCC
Q 019523 52 RDHVHALSKGVPARAVMSELFGKATG--CCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADC 128 (339)
Q Consensus 52 R~~~~~l~~g~~p~~~~~el~~~~~~--~~~g~~G~~h~~~~-~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~ 128 (339)
.++...+.-|++-..++++|...++. .+.+|.|.+.+|.. +..+...+++||+++|.|+|+++| .+
T Consensus 352 ~~r~~~~C~GCp~~~~~~~l~~~l~~d~ivv~D~G~~~~~~~~p~~~~~~~~~mG~~~~~AiGa~~a-----------~p 420 (595)
T TIGR03336 352 PVRPPSLCAGCPHRATFYAMKKVADREAIFPSDIGCYTLGIQPPLGTVDTTLCMGASIGVASGLSKA-----------GE 420 (595)
T ss_pred CCCCCCCCCCCCChHHHHHHHHhccCCcEEecCcchhhccccCCccccceeeccCchHHHHhhhhhc-----------CC
Confidence 34566777889888899999888874 35678887666543 233344568999999999999999 78
Q ss_pred CcEEEEEeCCCCccc-chHHHHHHHHHhCCCCEEEEEEcCC-eeecccccc-c---------ccChhhhhhcccCCCcEE
Q 019523 129 DHVTLAFFGDGTCNN-GQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR-A---------TSDPQIYKKGPAFGMPGF 196 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~-g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~-~---------~~~~d~~~~a~a~G~~~~ 196 (339)
+++||+++|||+|.+ | .++|.+|.++++|+++||.||+ |++...... . ...+|+.++++++|++++
T Consensus 421 ~~~Vv~i~GDG~f~~~g--~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~ 498 (595)
T TIGR03336 421 KQRIVAFIGDSTFFHTG--IPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGVEFV 498 (595)
T ss_pred CCCEEEEeccchhhhcC--HHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEE
Confidence 899999999999996 5 7899999999999999998885 554221110 0 124689999999999999
Q ss_pred EecCC-CHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 019523 197 HVDGM-DVLKVREVAKEAIERARRGEGPTLVECET 230 (339)
Q Consensus 197 ~Vdg~-d~~~v~~a~~~A~~~ar~~~gP~lIev~t 230 (339)
+|... +..++.+ +++++.+.++|++|++..
T Consensus 499 ~v~~~~~l~~l~~----al~~a~~~~gp~li~v~~ 529 (595)
T TIGR03336 499 EVVDPLNVKETIE----VFKAALAAEGVSVIIAKQ 529 (595)
T ss_pred EEeCcCCHHHHHH----HHHHHHhcCCCEEEEEcc
Confidence 99654 4444444 555555678999999954
No 126
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.66 E-value=2.6e-15 Score=149.12 Aligned_cols=203 Identities=20% Similarity=0.207 Sum_probs=146.1
Q ss_pred CcccccccCCCChHHHHHHHHHccC-CCCee-e-eCCCCcccccccCCCHHHHHHHhhCCCCCCCcCCCCccccccCCCc
Q 019523 18 GKMFGFVHLYNGQEAVSTGFIKLLK-KEDSV-V-STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHN 94 (339)
Q Consensus 18 g~~~g~~~~~~G~Ea~~~~~~~~l~-~~D~i-~-~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~g~~G~~h~~~~~~~ 94 (339)
++-.|++.++.|---+-+++...++ |.|.+ + ..|....|.+..|-. +-|..++.... -.|-..-...++-
T Consensus 38 S~~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiLTGR~--e~f~tlRq~~G-----lsGf~~r~ESe~D 110 (627)
T COG1154 38 SATGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKILTGRR--EQFDTLRQKDG-----LSGFPKREESEHD 110 (627)
T ss_pred ccCCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHHhcCch--hhcchhhhcCC-----CCCCCCcccCCCc
Confidence 4567888889998778889999997 66754 4 478988888877633 33433333211 1110000000111
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHH-hCCCCEEEEEEcCCeeecc
Q 019523 95 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA-LWKLPIVFVVENNLWAIGM 173 (339)
Q Consensus 95 ~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~-~~~Lpvi~vv~NN~~~i~~ 173 (339)
.-+.|+-+.++++|+|+|.|...+ +.++.||+++|||++.-|+.+|+||.|+ ..+-|+|+|++||+.+|+-
T Consensus 111 -~f~~GHsSTSiSaalG~A~A~~~~-------g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~ 182 (627)
T COG1154 111 -WFGVGHSSTSISAALGMAKARDLK-------GEDRNVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISP 182 (627)
T ss_pred -ccccCchHHHHHHHhhHHHHHHhc-------CCCCcEEEEECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCC
Confidence 123467778999999999997776 5788999999999999999999999998 5668899999999988865
Q ss_pred ccccc-------cc----------------------------Chhh-------hhhcccCCCcEE-EecCCCHHHHHHHH
Q 019523 174 SHLRA-------TS----------------------------DPQI-------YKKGPAFGMPGF-HVDGMDVLKVREVA 210 (339)
Q Consensus 174 ~~~~~-------~~----------------------------~~d~-------~~~a~a~G~~~~-~Vdg~d~~~v~~a~ 210 (339)
+...- +. ..+. ..+++.+|+.++ .|||+|++++..
T Consensus 183 nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~-- 260 (627)
T COG1154 183 NVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIP-- 260 (627)
T ss_pred CccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHH--
Confidence 43210 00 0011 126778999999 899999998876
Q ss_pred HHHHHHHHcCCCCEEEEEEEeeCCCCCCC
Q 019523 211 KEAIERARRGEGPTLVECETYRFRGHSLA 239 (339)
Q Consensus 211 ~~A~~~ar~~~gP~lIev~t~r~~gh~~~ 239 (339)
.++.++..++|+||++.|.++.|...+
T Consensus 261 --~Lk~~kd~~gPvllHv~T~KGKGY~pA 287 (627)
T COG1154 261 --TLKNAKDLKGPVLLHVVTKKGKGYKPA 287 (627)
T ss_pred --HHHHHhcCCCCEEEEEEecCCCCCChh
Confidence 566777889999999999999998765
No 127
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.65 E-value=1.6e-15 Score=138.01 Aligned_cols=194 Identities=22% Similarity=0.238 Sum_probs=125.9
Q ss_pred cCcccccccCCCChHHHHHHHHHccC-CCCeee--eCCCCcccccccCCCHHHHHHHhhCCCCCCCcCCCCccccccCCC
Q 019523 17 RGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVV--STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEH 93 (339)
Q Consensus 17 ~g~~~g~~~~~~G~Ea~~~~~~~~l~-~~D~i~--~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~g~~G~~h~~~~~~ 93 (339)
-.+..|++.++.|---..+|+...++ |.|.|. ..|....+.+..|-. +-|..|+.. .|-.|-......++
T Consensus 33 vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTGR~--~~f~TlRq~-----gGlSGF~~r~ES~~ 105 (270)
T PF13292_consen 33 VSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTGRR--DRFHTLRQY-----GGLSGFPKRSESEY 105 (270)
T ss_dssp CTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTTTC--CCGGGTTST-----TS--SS--TTT-TT
T ss_pred HhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccCcH--HHhchhhhc-----CCcCCCCCcccCCC
Confidence 45667888888898778889999997 668765 368888888776621 111222211 11122111111111
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecc
Q 019523 94 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM 173 (339)
Q Consensus 94 ~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~ 173 (339)
- .-+.|+-+.++++|+|+|.|..++ +.+..||+++|||++.-|+.+|+||.|+..+-++|+|++||+.+|+-
T Consensus 106 D-~f~~GHsstsiSaa~Gma~ar~l~-------~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liVILNDN~mSIs~ 177 (270)
T PF13292_consen 106 D-AFGAGHSSTSISAALGMAVARDLK-------GEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIVILNDNEMSISP 177 (270)
T ss_dssp ---S--SSSS-HHHHHHHHHHHHHHH-------TS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEEEEEE-SBSSSB
T ss_pred C-cccCCccHhHHHHHHHHHHHHHhc-------CCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEEEEeCCCcccCC
Confidence 1 224577788999999999998877 46889999999999999999999999999999999999999987764
Q ss_pred ccccc-------c---------------------------------cChhhhhhcccCCCcEE-EecCCCHHHHHHHHHH
Q 019523 174 SHLRA-------T---------------------------------SDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKE 212 (339)
Q Consensus 174 ~~~~~-------~---------------------------------~~~d~~~~a~a~G~~~~-~Vdg~d~~~v~~a~~~ 212 (339)
....- + ... ...+++.+|+.++ .|||+|+.++.+
T Consensus 178 nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~-~~~lFe~LG~~Y~GPiDGHdl~~Li~---- 252 (270)
T PF13292_consen 178 NVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGF-SPNLFEELGFDYIGPIDGHDLEELIE---- 252 (270)
T ss_dssp --SSHCCC--------------------------------------------CCCHHCT-EEEEEEETT-HHHHHH----
T ss_pred CcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhh-hHHHHHHcCCeEEeccCCCCHHHHHH----
Confidence 32100 0 000 1145678899999 889999998776
Q ss_pred HHHHHHcCCCCEEEEEEE
Q 019523 213 AIERARRGEGPTLVECET 230 (339)
Q Consensus 213 A~~~ar~~~gP~lIev~t 230 (339)
+++.++..++|+||+|.|
T Consensus 253 ~l~~~K~~~gPvllHV~T 270 (270)
T PF13292_consen 253 VLENAKDIDGPVLLHVIT 270 (270)
T ss_dssp HHHHHCCSSSEEEEEEE-
T ss_pred HHHHHhcCCCCEEEEEeC
Confidence 666777889999999986
No 128
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.55 E-value=7.9e-14 Score=143.27 Aligned_cols=198 Identities=14% Similarity=0.138 Sum_probs=142.4
Q ss_pred CcccccccCCCChHHHHHHHHHccC-CCCeee--eCCCCcccccccCCCHHHHHHHhhCCCCCCCcCCCCccccccCCCc
Q 019523 18 GKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVV--STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHN 94 (339)
Q Consensus 18 g~~~g~~~~~~G~Ea~~~~~~~~l~-~~D~i~--~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~g~~G~~h~~~~~~~ 94 (339)
.+..|++.++.|---+.+++...++ |.|.|. ..|....|.+..|-. .+ |. . .... |-.|-......++-
T Consensus 113 s~~GGHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKiLTGR~-~~-f~-~-Rq~~----GlsGf~~r~ES~~D 184 (701)
T PLN02225 113 KKTQKSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVLTRRW-SA-IP-S-RQKN----GISGVTSQLESEYD 184 (701)
T ss_pred cccCCCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchhhHhcCCh-hh-cC-c-cccC----CcCCCCCCCCCCCC
Confidence 4567888899999888899999998 678764 479999998887732 11 11 1 1111 22221111111121
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeeccc
Q 019523 95 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS 174 (339)
Q Consensus 95 ~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~ 174 (339)
.-+.|+-+.++++|+|+|.|..++ +.++.||+++|||++.-|+.+|+||.|+..+-++|+|++||+.+|+-.
T Consensus 185 -~f~~GHssTSiSaalG~a~ardl~-------g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n 256 (701)
T PLN02225 185 -SFGTGHGCNSISAGLGLAVARDIK-------GKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPN 256 (701)
T ss_pred -CCCCChHHHHHHHHHHHHHHHHhc-------CCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCC
Confidence 224577788999999999998777 467889999999999999999999999999999999999999888766
Q ss_pred --------ccc--------cc----------------cCh----hh---------------h-hhcccCCCcEE-EecCC
Q 019523 175 --------HLR--------AT----------------SDP----QI---------------Y-KKGPAFGMPGF-HVDGM 201 (339)
Q Consensus 175 --------~~~--------~~----------------~~~----d~---------------~-~~a~a~G~~~~-~Vdg~ 201 (339)
... +. ..+ .+ . .+++.+|+.++ .|||+
T Consensus 257 ~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGH 336 (701)
T PLN02225 257 MEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGH 336 (701)
T ss_pred CCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCC
Confidence 110 00 000 00 1 36688999999 89999
Q ss_pred CHHHHHHHHHHHHHHHHcCC--CCEEEEEEEeeCCC
Q 019523 202 DVLKVREVAKEAIERARRGE--GPTLVECETYRFRG 235 (339)
Q Consensus 202 d~~~v~~a~~~A~~~ar~~~--gP~lIev~t~r~~g 235 (339)
|+.++.++ ++.++..+ +|+||++.|.+++.
T Consensus 337 di~~Li~~----l~~~k~~~~~~PvlvHv~T~KGkd 368 (701)
T PLN02225 337 NIEDLVCV----LREVSSLDSMGPVLVHVITEENRD 368 (701)
T ss_pred CHHHHHHH----HHHHHcCCCCCCEEEEEEecCCCC
Confidence 99988774 45555555 99999999998873
No 129
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.54 E-value=1e-14 Score=164.53 Aligned_cols=154 Identities=18% Similarity=0.097 Sum_probs=111.7
Q ss_pred CCCHHHHHHHhhCCCCCC--CcCCCCc----cccccC------------------C--Cc-cccccccccc--chHHHHH
Q 019523 61 GVPARAVMSELFGKATGC--CRGQGGS----MHMFSK------------------E--HN-LLGGFAFIGE--GIPVATG 111 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~~--~~g~~G~----~h~~~~------------------~--~~-~~~~~g~lG~--~~p~AiG 111 (339)
++++..++++|...+++. +..+.|. ..+|.. + .. ++++.|+||+ ++|.|+|
T Consensus 693 ~l~~~~v~~~L~~~Lp~d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~G~mG~~G~lpaAIG 772 (1655)
T PLN02980 693 SLTEPYVAHVISEALTSDSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGNRGASGIDGLLSTAIG 772 (1655)
T ss_pred CcchHHHHHHHHHhCCCCCeEEEECcHHHHHHHHcCCccccccccccccccccccccccceEEecCCccchhhhHHHHHH
Confidence 367888999998887752 2233321 111210 1 11 2567899999 5999999
Q ss_pred HHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhC--CCCEEEEEEcCC-eeeccc------ccc----c
Q 019523 112 AAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW--KLPIVFVVENNL-WAIGMS------HLR----A 178 (339)
Q Consensus 112 ~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~--~Lpvi~vv~NN~-~~i~~~------~~~----~ 178 (339)
+++| . +++|+|++|||+|+|. .++|.||+++ ++|+++||.||+ |++-.. .+. .
T Consensus 773 aala-----------~-~r~Vv~i~GDGsF~m~--~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~~ 838 (1655)
T PLN02980 773 FAVG-----------C-NKRVLCVVGDISFLHD--TNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQ 838 (1655)
T ss_pred Hhhc-----------C-CCCEEEEEehHHHHhh--hhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHHH
Confidence 9998 4 7789999999999998 8999999984 999999999886 333110 000 0
Q ss_pred ----ccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC
Q 019523 179 ----TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 234 (339)
Q Consensus 179 ----~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~ 234 (339)
..++|+.++|++||+++.+|+..+ ++.+ |++.+.+.++|+||||.|.|..
T Consensus 839 ~~~~~~~~df~~lA~a~G~~~~rV~~~~--eL~~----aL~~a~~~~~p~lIEV~t~~~~ 892 (1655)
T PLN02980 839 YFYTSHDISIENLCLAHGVRHLHVGTKS--ELED----ALFTSQVEQMDCVVEVESSIDA 892 (1655)
T ss_pred HhcCCCCCCHHHHHHHcCCceeecCCHH--HHHH----HHHHhhccCCCEEEEEecChhh
Confidence 135789999999999999998654 5544 5566667789999999997643
No 130
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.51 E-value=1.8e-13 Score=132.44 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=109.6
Q ss_pred CCHHHHHHHhhCCCC-C--CCcCCCCcc-----ccccC----CCcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 62 VPARAVMSELFGKAT-G--CCRGQGGSM-----HMFSK----EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 62 ~~p~~~~~el~~~~~-~--~~~g~~G~~-----h~~~~----~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
+++..++.-+...++ . +.+.+|++. ++..+ .+.-.+.+|+||.|++.|+++|++ .|+
T Consensus 380 LN~~~~~~~vre~L~~~d~ilVsEGantmdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~-----------~P~ 448 (571)
T KOG1185|consen 380 LNYYQVLQTVRELLPNDDTILVSEGANTMDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALA-----------APD 448 (571)
T ss_pred CcHHHHHHHHHHhcCCCCcEEEecCCcchhhhhhhccCCCcccccCCccccccccchhHHHHHHhh-----------CCC
Confidence 566667666666665 2 234444431 22111 123468999999999999999999 799
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcC-C-eeecccccc---------c------ccChhhhhhcccCC
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-L-WAIGMSHLR---------A------TSDPQIYKKGPAFG 192 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN-~-~~i~~~~~~---------~------~~~~d~~~~a~a~G 192 (339)
+.|+|+-||++|..+ ..++.|+++|+|||++||.|| + |+....... + ..+.+|.+++++||
T Consensus 449 ~~V~~veGDsaFGfS--aME~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G 526 (571)
T KOG1185|consen 449 RKVVCVEGDSAFGFS--AMELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFG 526 (571)
T ss_pred CeEEEEecCcccCcc--hhhHHHHHHhcCCeEEEEecCCcccccCcccHHHHhhcCcccCCCcccccccccHHHHHHHcC
Confidence 999999999999987 889999999999988888866 3 322221110 1 13557899999999
Q ss_pred CcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 193 MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 193 ~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
.+++.|+ .++++..+++++. +.+++|++|++...+
T Consensus 527 ~kG~~v~--t~~el~~~l~~a~---q~~~~psvINVlI~p 561 (571)
T KOG1185|consen 527 GKGYFVS--TVEELLAALQQAC---QDTDKPSVINVLIGP 561 (571)
T ss_pred CCceeeC--CHHHHHHHHHHHH---hcCCCCeEEEEEecc
Confidence 9999998 4557766555544 356699999997643
No 131
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.47 E-value=1.9e-13 Score=133.55 Aligned_cols=152 Identities=18% Similarity=0.176 Sum_probs=109.0
Q ss_pred CCHHHHHHHhhCCCC--CCCcCCCCccccccCCC--------cccccccccccchHHHHHHHHHHHHhhhhhhccCCCcE
Q 019523 62 VPARAVMSELFGKAT--GCCRGQGGSMHMFSKEH--------NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 131 (339)
Q Consensus 62 ~~p~~~~~el~~~~~--~~~~g~~G~~h~~~~~~--------~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~ 131 (339)
++-+.+++++..-+. +.+..+.|...+...+. ....-+|++|+.+|+|+|+++| .++++
T Consensus 363 Ltq~~~w~~~~~fl~p~dviiaetGtS~FG~~~~~lP~~~~~i~Q~lWGSIG~t~pAalGa~~A-----------~~drR 431 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIAETGTSFFGALDIRLPKGATFISQPLWGSIGYTLPAALGAALA-----------APDRR 431 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEccccccccceeeecCCCCeEEcccchhhcccccHhhhhhhhc-----------CCCcc
Confidence 566777777776554 34556777554433221 1246789999999999999999 78999
Q ss_pred EEEEeCCCCcccchHHHHHHHHHhCCCC-EEEEEEcCCeeecccccc------cccChhhhhhcccCCCcEE----EecC
Q 019523 132 TLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLR------ATSDPQIYKKGPAFGMPGF----HVDG 200 (339)
Q Consensus 132 vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~------~~~~~d~~~~a~a~G~~~~----~Vdg 200 (339)
+|.|+||||+++. .|++.+..+|+|| +|||++|++|.|..-... .....|+.++.++||..-. ++..
T Consensus 432 ~IL~iGDGs~QlT--vQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~~l~~afg~~~~~~~~~~~~ 509 (557)
T COG3961 432 VILFIGDGSLQLT--VQEISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYTALPEAFGAKNGEAKFRATT 509 (557)
T ss_pred EEEEEcCchhhhh--HHHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchhhhhhhcCCCCceEEEeecC
Confidence 9999999999998 9999999999998 666666668887543332 1245789999999997544 3332
Q ss_pred CCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEee
Q 019523 201 MDVLKVREVAKEAIERARR-GEGPTLVECETYR 232 (339)
Q Consensus 201 ~d~~~v~~a~~~A~~~ar~-~~gP~lIev~t~r 232 (339)
.. + ++.+++.+.+ .+++.+|||++++
T Consensus 510 ~~--~----l~~~~~~~~~~~~~i~lIEv~lp~ 536 (557)
T COG3961 510 GE--E----LALALDVAFANNDRIRLIEVMLPV 536 (557)
T ss_pred hH--H----HHHHHHHHhcCCCceEEEEEecCc
Confidence 22 3 3345555544 5589999998764
No 132
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.31 E-value=1.3e-11 Score=119.05 Aligned_cols=117 Identities=18% Similarity=0.250 Sum_probs=96.9
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcC-Ceeecc
Q 019523 95 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGM 173 (339)
Q Consensus 95 ~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN-~~~i~~ 173 (339)
..-+++.|||-+..++|+++| .|++.|++++||||++|- +.+|.|+..++..+++|+.+| +|+-
T Consensus 439 ~EYgfSCMGYEiaG~lG~K~a-----------~pdreV~vmVGDGSymMl--nSEL~Tsv~~g~Ki~Vvl~DN~GyGC-- 503 (617)
T COG3962 439 LEYGFSCMGYEIAGGLGAKAA-----------EPDREVYVMVGDGSYMML--NSELATSVMLGKKIIVVLLDNRGYGC-- 503 (617)
T ss_pred eeecccccccccccccccccC-----------CCCCeEEEEEcccchhhh--hHHHHHHHHcCCeEEEEEECCCCcch--
Confidence 345789999999999999987 788999999999999987 999999999999998888888 4532
Q ss_pred ccc--------------------ccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 174 SHL--------------------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 174 ~~~--------------------~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
+.. ......||++.|++||+..++|. ++.++ +.|++.+++..+++||++.|..
T Consensus 504 In~LQm~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL----~aAL~~Ak~~~~ttvi~I~t~P 576 (617)
T COG3962 504 INRLQMATGGASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEEL----EAALADAKASDRTTVIVIDTDP 576 (617)
T ss_pred hhhhhhhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHH----HHHHHHHHhCCCCEEEEEecCC
Confidence 111 11345699999999999999996 44554 5578888999999999998754
No 133
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=99.25 E-value=5.9e-12 Score=117.19 Aligned_cols=163 Identities=21% Similarity=0.224 Sum_probs=125.5
Q ss_pred CCCHHHHHHHhhCCCCC-CC-cCCCC--------ccccccCC-CcccccccccccchHHHHHHHHHHHHhhhhhhccCCC
Q 019523 61 GVPARAVMSELFGKATG-CC-RGQGG--------SMHMFSKE-HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 129 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~-~~-~g~~G--------~~h~~~~~-~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~ 129 (339)
.++|+++..|+...... .+ +..-| -.|.+.+. |...+..|++|+.+|+|+|...| .|+
T Consensus 369 p~kpqrvyeemn~~fgrd~~yvstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~a-----------dp~ 437 (592)
T COG3960 369 PVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAA-----------DPK 437 (592)
T ss_pred CCCHHHHHHHHHhhcCCceeEEEeccHHHHhhhhhhhhcCCcceeecCccCCcccccchhhceeec-----------CCC
Confidence 57899999888766553 11 11122 13444443 34468889999999999999988 899
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccc----------------------cChhhhhh
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT----------------------SDPQIYKK 187 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~----------------------~~~d~~~~ 187 (339)
+.+|++.||=.|+.- .|+|...++++||.|+|+.||.| ++...+.|+ -..|-.+.
T Consensus 438 r~vvalsgdydfqfm--ieelavgaq~k~pyihv~vnnay-lglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v 514 (592)
T COG3960 438 RNVVAISGDYDFQFL--IEELAVGAQFKIPYIHVLVNNAY-LGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKV 514 (592)
T ss_pred CceEEeecCchHHHH--HHHHhhhhcccCceEEEEecchH-HHHHHHHHhcCCccceeeehhhccCCccccccCccceee
Confidence 999999999999976 99999999999999999999985 444443322 12356678
Q ss_pred cccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCC
Q 019523 188 GPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 239 (339)
Q Consensus 188 a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~ 239 (339)
++++|++.++|-. +.++..++.+|.....+.+-|++||+...|....++.
T Consensus 515 ~eglgckairv~~--p~e~a~af~~a~~lm~eh~vpvvve~ilervtnismg 564 (592)
T COG3960 515 AEGLGCKAIRVFK--PEDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMG 564 (592)
T ss_pred hhccCceeEEecC--hHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhccccc
Confidence 8999999999964 4478788888877777888999999999888877765
No 134
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=99.12 E-value=1.5e-09 Score=102.06 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=93.0
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCC-cccchHHHHHHHHHhCCCCEEEEEEcCC-eeec
Q 019523 95 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT-CNNGQFFECLNMAALWKLPIVFVVENNL-WAIG 172 (339)
Q Consensus 95 ~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~-~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~ 172 (339)
..+..+..|-+++.|.|+++| .++..||++.|||. +..| ...|.-+.+.+.+|++||.||+ |+..
T Consensus 65 ~~~~hs~~gra~a~atGik~A-----------~~~l~Viv~gGDG~~~dIG--~~~l~h~~~Rn~dit~iv~DNevYgnT 131 (294)
T COG1013 65 PPWVHSLHGRAAAVATGIKLA-----------NPALSVIVIGGDGDAYDIG--GNHLIHALRRNHDITYIVVDNEVYGNT 131 (294)
T ss_pred CCceeeccCcchhhHHHHHHh-----------ccCCeEEEEecchhHhhhh--hHHHHHHHHcCCCeEEEEECCeecccC
Confidence 345566788899999999999 67789999999995 5599 8999999999999999999997 4332
Q ss_pred ccccccc------------------cChhhhhhcccCCCcEE-EecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 173 MSHLRAT------------------SDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 173 ~~~~~~~------------------~~~d~~~~a~a~G~~~~-~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
. .|.+. ...|+..++-++|.+++ ++.-.++..+.+.++ .|.+.+||+||++.++-
T Consensus 132 g-gQ~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~----kA~~~~Gps~I~v~sPC 205 (294)
T COG1013 132 G-GQASPTTPKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIK----KAAEHKGPSFIDVLSPC 205 (294)
T ss_pred C-CccCCCCCCCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHH----HHHhccCCeEEEEecCC
Confidence 2 22111 12378889999999888 887777777766544 45566799999996543
No 135
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.06 E-value=2.2e-10 Score=108.30 Aligned_cols=201 Identities=18% Similarity=0.246 Sum_probs=115.8
Q ss_pred cccccccCCCChHHHHHHHHHccCCC--CeeeeCCCCccccc--c----cC----------CC---HHHHHHHhhCCCCC
Q 019523 19 KMFGFVHLYNGQEAVSTGFIKLLKKE--DSVVSTYRDHVHAL--S----KG----------VP---ARAVMSELFGKATG 77 (339)
Q Consensus 19 ~~~g~~~~~~G~Ea~~~~~~~~l~~~--D~i~~~~R~~~~~l--~----~g----------~~---p~~~~~el~~~~~~ 77 (339)
+..|++.++.|+-.+.+.+..++++. |.++-.-.+|+..- + -| .+ +.++++++ +.
T Consensus 45 rllGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~F----S~ 120 (379)
T PF09364_consen 45 RLLGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQF----SF 120 (379)
T ss_dssp S--S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHB----TS
T ss_pred ccccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhC----CC
Confidence 35688888999999999998888754 67777778888552 2 11 01 22233332 11
Q ss_pred CCcCCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCC
Q 019523 78 CCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWK 157 (339)
Q Consensus 78 ~~~g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~ 157 (339)
+ | +-..|....-.+...--|-||++++.|.|+++- +||.+|+|++|||.+.+|. ..+-..+..+=
T Consensus 121 P--g-GipSH~~p~tPGsIhEGGELGYaLshA~GA~~D-----------nPdliv~~vvGDGEaETGp-lA~sWh~~kfl 185 (379)
T PF09364_consen 121 P--G-GIPSHVSPETPGSIHEGGELGYALSHAFGAVFD-----------NPDLIVACVVGDGEAETGP-LAASWHSNKFL 185 (379)
T ss_dssp T--T-SB-SSS-TTSTT-S---SSTS-HHHHHHHHHTT------------TT-EEEEEEETTGGGSHH-HHHHGGGGGSS
T ss_pred C--C-CCccccCcCCCCccCcCcchhhHHHHHhhcccC-----------CCCeEEEEEecCCcccCCc-cccccccccee
Confidence 1 1 113455443333344457899999999999987 8999999999999999884 11111122221
Q ss_pred CC-----EEEEEEcCCeeeccccccc-ccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHH-----------HcC
Q 019523 158 LP-----IVFVVENNLWAIGMSHLRA-TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERA-----------RRG 220 (339)
Q Consensus 158 Lp-----vi~vv~NN~~~i~~~~~~~-~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~a-----------r~~ 220 (339)
=| |+=|+.=|+|.|+.++... .+..++...+++||+.-+.|+|.|+.++...+..+++.+ |++
T Consensus 186 nP~~dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~ 265 (379)
T PF09364_consen 186 NPATDGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWALEEIRAIQKAARSG 265 (379)
T ss_dssp -TTTS-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CcccCceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 12 5555555999998876543 245678899999999999999999998887766555432 222
Q ss_pred C---CC--EEEEEEEeeCCCCCC
Q 019523 221 E---GP--TLVECETYRFRGHSL 238 (339)
Q Consensus 221 ~---gP--~lIev~t~r~~gh~~ 238 (339)
+ +| -+|.++|.++++-+.
T Consensus 266 ~~~~~prwPmivlRtPKGWtgP~ 288 (379)
T PF09364_consen 266 NPAYRPRWPMIVLRTPKGWTGPK 288 (379)
T ss_dssp -SS----EEEEEEE--TTTTS-S
T ss_pred CCCCCCCCcEEEEECCcccCCcc
Confidence 2 23 367789998887654
No 136
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.04 E-value=6.6e-10 Score=108.73 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=86.7
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCE-EEEEEcCCeeecccc
Q 019523 97 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPI-VFVVENNLWAIGMSH 175 (339)
Q Consensus 97 ~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpv-i~vv~NN~~~i~~~~ 175 (339)
..+|++|+.+|+++|+++| .++++++.|+|||++++. .|++.++.+|+||. +|++.|++|.|....
T Consensus 412 ~~wgsIG~svga~lG~a~a-----------~~e~rvilfiGDGs~qlT--vQeiStmir~gl~~~if~~NN~GYTIE~~I 478 (561)
T KOG1184|consen 412 MQWGSIGWSVGATLGYAQA-----------APEKRVILFIGDGSFQLT--VQEISTMIRWGLKPIIFLINNGGYTIEVEI 478 (561)
T ss_pred EEEeeccccchhhhhhhhc-----------cCCceEEEEecCccceee--HHHHHHHHhcCCCcEEEEEeCCceEEEEee
Confidence 3568999999999999999 688999999999999998 99999999999995 555555588775433
Q ss_pred cc----cccChhhhhhcccCCCcE-----EEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 019523 176 LR----ATSDPQIYKKGPAFGMPG-----FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 231 (339)
Q Consensus 176 ~~----~~~~~d~~~~a~a~G~~~-----~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~ 231 (339)
.. ...+.|+.++.++||..- .+|-.. .+..++.+++.. .+.+++.+|||...
T Consensus 479 H~~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~~~--~e~~~~~~~~~~--~~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 479 HDGPYNDIQNWDYTALLEAFGAGEGKYETHKVRTE--EELVEAIKDATF--EKNDKIRLIEVILP 539 (561)
T ss_pred cCCCccccccchHHHHHHhhcCccceeEEeeeccc--hHHHHHHhhhhh--cccCceEEEEEecC
Confidence 22 224578999999998643 233222 244444444432 24677999999764
No 137
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.02 E-value=4.9e-09 Score=105.62 Aligned_cols=80 Identities=25% Similarity=0.177 Sum_probs=68.8
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCC-EEEEEEcCCeeecccc
Q 019523 97 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSH 175 (339)
Q Consensus 97 ~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp-vi~vv~NN~~~i~~~~ 175 (339)
-.+.+||-|...||=.|.-.||+.++.-.+.++.+|+||+|||.+.++...+++..|++++|. ++|||+.|...+..+.
T Consensus 189 FpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpV 268 (887)
T COG2609 189 FPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPV 268 (887)
T ss_pred cCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcc
Confidence 345789999999999999999988765445778999999999999999999999999999998 9999999965776654
Q ss_pred c
Q 019523 176 L 176 (339)
Q Consensus 176 ~ 176 (339)
.
T Consensus 269 r 269 (887)
T COG2609 269 R 269 (887)
T ss_pred c
Confidence 3
No 138
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=98.76 E-value=1.1e-07 Score=91.07 Aligned_cols=157 Identities=11% Similarity=0.088 Sum_probs=100.4
Q ss_pred CcEEEEEeCCCCc-ccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccccc-----------------ccChhhhhhcc
Q 019523 129 DHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRA-----------------TSDPQIYKKGP 189 (339)
Q Consensus 129 ~~~vv~~~GDG~~-~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~-----------------~~~~d~~~~a~ 189 (339)
+..||++.|||.. ..| .+.|.-+...+.+|++||.||. |+... .+.+ ....|+..++.
T Consensus 151 ~~~v~v~gGDG~~ydIG--~~~l~ha~~r~~ni~~iv~DNe~Y~nTG-gQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~ 227 (365)
T cd03377 151 KKSVWIIGGDGWAYDIG--YGGLDHVLASGENVNILVLDTEVYSNTG-GQASKATPLGAVAKFAAAGKRTGKKDLGMIAM 227 (365)
T ss_pred ccceEEEecchhhhccc--hhhHHHHHHcCCCeEEEEECCcccccCC-CcCCCCCCCcCcCccCCCCCCCCCcCHHHHHH
Confidence 3589999999965 489 8899999999999999999997 44321 1111 12357888999
Q ss_pred cCCCcEE-EecC-CCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC-CC--CCCCC-------------CCCC--CHH-
Q 019523 190 AFGMPGF-HVDG-MDVLKVREVAKEAIERARRGEGPTLVECETYRFR-GH--SLADP-------------DELR--DPA- 248 (339)
Q Consensus 190 a~G~~~~-~Vdg-~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~-gh--~~~D~-------------~~yr--~~~- 248 (339)
++|.+++ ++.- .++.++.+++++ |.+.+||+||++.++-.. |. .+.+. +.|| +..
T Consensus 228 a~g~~YVA~~s~~~~~~~~~~~i~e----A~~~~Gps~I~v~sPC~~~G~~~~~~~~~~~~klAVetG~wpLy~~~P~~~ 303 (365)
T cd03377 228 SYGNVYVAQIALGANDNQTLKAFRE----AEAYDGPSLIIAYSPCIAHGIKGGMTKSQEQQKLAVESGYWPLYRYNPRLV 303 (365)
T ss_pred HcCCCEEEEEecccCHHHHHHHHHH----HhcCCCCEEEEEEccCcccCccCChhhHHHHHHHHHHcCCCeEEEEecccc
Confidence 9999888 6654 488877775555 446799999999765442 33 11110 1132 100
Q ss_pred -------HHHHHhhCChHHHHHHHHHHcCcc-------cHHHHHHHHHHHHHHHHHHH
Q 019523 249 -------EKARYAARDPITALKKYLIESSLA-------SEAELKAIEKKIDEVVEDAV 292 (339)
Q Consensus 249 -------e~~~~~~~dPl~~~~~~L~~~g~~-------~~~~~~~i~~~~~~~v~~a~ 292 (339)
.++.-..+.|+..|-+..-++.++ .++.+++++++++++++...
T Consensus 304 ~~G~~~~~ld~~~~~~pv~efL~~q~Rf~~L~k~~p~~a~~~~~~~q~~vd~r~~~l~ 361 (365)
T cd03377 304 EEGKNPLQLDSKEPDGPVEEFLNNENRFAALKKANPERAEQLFEQLQADAKERYKRYK 361 (365)
T ss_pred ccCCCCeeecCCCCCCCHHHHHHhchhHHHhcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001223887777777777777 34556666666666665543
No 139
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.36 E-value=1.8e-06 Score=87.07 Aligned_cols=181 Identities=25% Similarity=0.272 Sum_probs=118.1
Q ss_pred HHHHHHHHHccCCC---Cee--eeC-------CCCcccccccCCCHHHHHHHhhCCCCC---CCcCCCCcccccc-CCCc
Q 019523 31 EAVSTGFIKLLKKE---DSV--VST-------YRDHVHALSKGVPARAVMSELFGKATG---CCRGQGGSMHMFS-KEHN 94 (339)
Q Consensus 31 Ea~~~~~~~~l~~~---D~i--~~~-------~R~~~~~l~~g~~p~~~~~el~~~~~~---~~~g~~G~~h~~~-~~~~ 94 (339)
+-+..|+...|... ++. ... -..+.-.|.-|++-...+..+...... ...+|-|-+.+.. ++++
T Consensus 343 ~~i~~ai~~~l~~~~~~s~~~~~~~~~~~~~~~~~RpP~lC~GCPHr~sf~~~k~~~~~~~~~~~~DIGCytlg~~~P~~ 422 (640)
T COG4231 343 EKIANAIAKFLGKEGSPSYESIVAEVRKAAVLIPPRPPALCPGCPHRPSFYALKKAAAELGGHPSGDIGCYTLGILPPLN 422 (640)
T ss_pred HHHHHHHHHHhCccCCcccccchhhhhcccccCCCCCCcCCCCCCCchhhHHHHHHHHhhCCCCCCCcceeecccCCCcc
Confidence 55666777777542 111 011 122344556677766666555443321 1235556443332 2344
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcc-cchHHHHHHHHHhCCCCEEEEEEcCCeeecc
Q 019523 95 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWAIGM 173 (339)
Q Consensus 95 ~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~-~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~ 173 (339)
....+-.||.++++|-|+.++ . .+++|+++|||.|. .| ..+|..|+..+.+++++|.+|.+.--|
T Consensus 423 ~~d~t~~mGssig~a~g~~~~-----------~-~k~~va~iGDsTF~HsG--i~~l~nAV~n~~~~~~vvLdN~~tAMT 488 (640)
T COG4231 423 TVDTTTMMGSSIGIAGGLSFA-----------S-TKKIVAVIGDSTFFHSG--ILALINAVYNKANILVVVLDNRTTAMT 488 (640)
T ss_pred hhhhhhhccchhhhccccccc-----------c-CCceEEEeccccccccC--cHHHHHHHhcCCCeEEEEEeccchhcc
Confidence 445556789999999999987 2 37899999999988 66 778999999999999999999854333
Q ss_pred ccccc-----------ccChhhhhhcccCCCcEE-EecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Q 019523 174 SHLRA-----------TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECE 229 (339)
Q Consensus 174 ~~~~~-----------~~~~d~~~~a~a~G~~~~-~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~ 229 (339)
..|.. ....++.+..+++|+..+ +||..|..++.+ +++.+++..+|++|.++
T Consensus 489 GgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~----~~keale~~gpsViiak 552 (640)
T COG4231 489 GGQPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSE----AIKEALEVPGPSVIIAK 552 (640)
T ss_pred CCCCCCCcccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHH----HHHHHhcCCCceEEEEc
Confidence 22211 123467788899999888 557677776655 55666778899999773
No 140
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.35 E-value=3.5e-06 Score=85.69 Aligned_cols=173 Identities=18% Similarity=0.222 Sum_probs=114.1
Q ss_pred cccccccCCCChHHHHHHHHHccCCCC--eeeeCCCCcccccc------cC-CCH--------HHHHHHhhCCCCCCCcC
Q 019523 19 KMFGFVHLYNGQEAVSTGFIKLLKKED--SVVSTYRDHVHALS------KG-VPA--------RAVMSELFGKATGCCRG 81 (339)
Q Consensus 19 ~~~g~~~~~~G~Ea~~~~~~~~l~~~D--~i~~~~R~~~~~l~------~g-~~p--------~~~~~el~~~~~~~~~g 81 (339)
+..|++.++.|+-.+.+.+..++++.| .++..-.+|+.... -| +++ ++=|..|+.....+
T Consensus 58 r~lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~P--- 134 (793)
T COG3957 58 RLLGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFP--- 134 (793)
T ss_pred hhcccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhccCC---
Confidence 346888899999999999888887654 45555556665432 11 111 11133344333311
Q ss_pred CCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHh----CC
Q 019523 82 QGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAAL----WK 157 (339)
Q Consensus 82 ~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~----~~ 157 (339)
-|-..|+...-.+...-.|.||+++..|.|+++- +|+.++.|++|||....|. +.|+-. ++
T Consensus 135 gGi~SH~~petPGsIhEGGeLGy~l~ha~gAa~d-----------~Pdli~~~vvGDGeaetgp----latsWhs~kf~n 199 (793)
T COG3957 135 GGIGSHVAPETPGSIHEGGELGYALSHAYGAAFD-----------NPDLIVACVVGDGEAETGP----LATSWHSNKFLN 199 (793)
T ss_pred CCcccccCCCCCCccCcCcchhHHHHHHHHhhcC-----------CCCcEEEEEecccccccCc----cccccccccccC
Confidence 1123466544345555568999999999999987 8999999999999766663 222221 11
Q ss_pred CC----EEEEEEcCCeeecccccccc-cChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 158 LP----IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 158 Lp----vi~vv~NN~~~i~~~~~~~~-~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
-+ |+=|..=|+|.|+-++.-.+ +..++..++++||..-+.|+|.|+.++...
T Consensus 200 p~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~ 256 (793)
T COG3957 200 PARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQL 256 (793)
T ss_pred ccccCceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhh
Confidence 11 55555569999987765433 456788999999999999999898874443
No 141
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=98.20 E-value=1.1e-05 Score=88.99 Aligned_cols=157 Identities=11% Similarity=0.106 Sum_probs=100.4
Q ss_pred cEEEEEeCCCCc-ccchHHHHHHHHHhCCCCEEEEEEcCCeeeccccccc-----------------ccChhhhhhcccC
Q 019523 130 HVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------------TSDPQIYKKGPAF 191 (339)
Q Consensus 130 ~~vv~~~GDG~~-~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~-----------------~~~~d~~~~a~a~ 191 (339)
..||++.|||.. ..| ++.|.-+.+.+.+|.+||.||.....|..+.+ ....|+..++.++
T Consensus 952 ~sv~~~~GDG~~~diG--~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIG--YGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccC--ccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 479999999965 488 88999999999999999999973333322211 1245788899999
Q ss_pred CCcEE-Eec-CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC-CC--CCCCC-------------CCCC--CHHHHH
Q 019523 192 GMPGF-HVD-GMDVLKVREVAKEAIERARRGEGPTLVECETYRFR-GH--SLADP-------------DELR--DPAEKA 251 (339)
Q Consensus 192 G~~~~-~Vd-g~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~-gh--~~~D~-------------~~yr--~~~e~~ 251 (339)
|.+++ ++. +.++.++.++++ .|.+.+||++|++.++-.. |. .+.+. +.|| +..+.+
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~----~A~~~~G~s~i~~~~pC~~~g~~~~~~~~~~~~k~av~~g~wply~~~p~~~~~ 1105 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFR----EAEAYDGPSIVIAYSPCINHGIKKGMGKSQAEQKTAVESGYWPLYRYNPRLAEQ 1105 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHH----HHHcCCCCEEEEEECCCcccCcCCCcchHHHHHHHHHHcCCceEEEecCccccc
Confidence 99888 775 458888777554 4556899999999776432 21 11100 1232 111000
Q ss_pred --------HHhhCChHHHHHHHHHHcCccc-------HHHHHHHHHHHHHHHHHHH
Q 019523 252 --------RYAARDPITALKKYLIESSLAS-------EAELKAIEKKIDEVVEDAV 292 (339)
Q Consensus 252 --------~~~~~dPl~~~~~~L~~~g~~~-------~~~~~~i~~~~~~~v~~a~ 292 (339)
.-..+.|+..|-+..-++.++. ++.+++++++++++++...
T Consensus 1106 g~~~~~l~~~~~~~~~~~~l~~~~r~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~ 1161 (1165)
T TIGR02176 1106 GKNPFQLDSKEPDSSVAEFLNGEVRFASLKKSFPDDAERLFNKAAHEAKRRFKEYE 1161 (1165)
T ss_pred CCCCeeecCCCCCcCHHHHHHhchHHHHhcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012467877777777777773 4455566666666665443
No 142
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.91 E-value=1.8e-05 Score=79.04 Aligned_cols=110 Identities=24% Similarity=0.282 Sum_probs=77.1
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEE-EcCCeee-cc-ccc-----
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVV-ENNLWAI-GM-SHL----- 176 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv-~NN~~~i-~~-~~~----- 176 (339)
-++.|+|++.| ..++++.++||=|+-.- ...|-+......|+++|| +||+=+| ++ +..
T Consensus 427 ~vSTA~Gi~~a------------~~~ptv~liGDLS~lhD--~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~ 492 (566)
T COG1165 427 TVSTALGIARA------------TQKPTVALIGDLSFLHD--LNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPV 492 (566)
T ss_pred hHHHHhhhhhh------------cCCceEEEEechhhhhc--cchHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcch
Confidence 56789999987 35569999999998854 446667777788855555 5555343 11 111
Q ss_pred --ccc---cChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC
Q 019523 177 --RAT---SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 234 (339)
Q Consensus 177 --~~~---~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~ 234 (339)
+.. ..-||...++.||..+.++++.+ .++++++.+-...|-.|||++|.|-.
T Consensus 493 fe~~F~tPh~ldF~~la~~y~l~y~~~~s~~------~l~~~~~~~~~~~g~~viEvkt~r~~ 549 (566)
T COG1165 493 FERLFGTPHGLDFAHLAATYGLEYHRPQSWD------ELGEALDQAWRRSGTTVIEVKTDRSD 549 (566)
T ss_pred HHHhcCCCCCCCHHHHHHHhCccccccCcHH------HHHHHHhhhccCCCcEEEEEecChhH
Confidence 111 24589999999999999998765 35556766666678999999998743
No 143
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.91 E-value=4.9e-05 Score=83.07 Aligned_cols=158 Identities=16% Similarity=0.077 Sum_probs=98.4
Q ss_pred cccccccCCCHHHHHHHhhCCCCCCCcCCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEE
Q 019523 54 HVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL 133 (339)
Q Consensus 54 ~~~~l~~g~~p~~~~~el~~~~~~~~~g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv 133 (339)
+.-.+..|++-...+.- . ......++-|-+.+..........+..||.....++|.+.+ ..++.+|
T Consensus 425 R~P~~C~GCPH~~s~k~-~--~~~~~~gdIGC~tl~~~~~~~~~~~~~MG~~g~~~~G~a~~-----------~~~~~v~ 490 (1159)
T PRK13030 425 RTPYFCSGCPHNTSTKV-P--EGSIAQAGIGCHFMASWMDRDTTGLTQMGGEGVDWIGHAPF-----------TETKHVF 490 (1159)
T ss_pred CCCCcCCCCCCchhhcc-C--CCCEeecCcCHHHHhhccccccceeeccCccchhhceeccc-----------cCCCCEE
Confidence 34556667766655521 1 01123455554433332233445667899999999999877 3456799
Q ss_pred EEeCCCCcc-cchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhh---hcccCCCcEEEecCCCHHH----
Q 019523 134 AFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK---KGPAFGMPGFHVDGMDVLK---- 205 (339)
Q Consensus 134 ~~~GDG~~~-~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~---~a~a~G~~~~~Vdg~d~~~---- 205 (339)
+++|||.|. .| +-+|--|...+.+++++|.+|...--|..|......++.+ ..++.|+.-+.|-..|+..
T Consensus 491 a~iGDgTf~HSG--~~al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~ 568 (1159)
T PRK13030 491 QNLGDGTYFHSG--SLAIRQAVAAGANITYKILYNDAVAMTGGQPVDGSISVPQIARQVEAEGVSRIVVVSDEPEKYRGH 568 (1159)
T ss_pred EEeccchhhhcC--HHHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCCHHHHHHHHHhCCCcEEEEecCChhhcccc
Confidence 999999988 66 7799999999999999999997322222221112234444 7779999888765445444
Q ss_pred -HH--------HHHHHHHHHH-HcCCCCEEEEE
Q 019523 206 -VR--------EVAKEAIERA-RRGEGPTLVEC 228 (339)
Q Consensus 206 -v~--------~a~~~A~~~a-r~~~gP~lIev 228 (339)
+. +.+. +++++ ++.+||++|..
T Consensus 569 ~~~~~~~v~~r~~l~-~vq~~l~~~~GvsViI~ 600 (1159)
T PRK13030 569 HLPAGVTVHHRDELD-AVQRELRETPGVTVLIY 600 (1159)
T ss_pred ccCCCcccccHHHHH-HHHHHHhcCCCcEEEEE
Confidence 21 2222 23333 36788988876
No 144
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=97.71 E-value=0.00019 Score=78.53 Aligned_cols=119 Identities=21% Similarity=0.128 Sum_probs=84.6
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcc-cchHHHHHHHHHhCCCCEEEEEEcCCe-eeccc
Q 019523 97 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLW-AIGMS 174 (339)
Q Consensus 97 ~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~-~g~~~eal~~A~~~~Lpvi~vv~NN~~-~i~~~ 174 (339)
-++..||.....++|.+.+ ..++.+|+++|||.|. .| +-+|--|...+.+++++|.+|.. +|...
T Consensus 478 ~~~~~MG~eg~~~~G~a~f-----------~~~~hv~a~iGDgTffHSG--~~al~~AV~~~~nit~~IL~N~~vAMTGg 544 (1165)
T PRK09193 478 STFTQMGGEGVPWIGQAPF-----------TDEKHVFQNLGDGTYFHSG--LLAIRAAVAAGVNITYKILYNDAVAMTGG 544 (1165)
T ss_pred CeeeccCCcchhhceeccc-----------cCCCcEEEEeccccchhcC--HHHHHHHHhcCCCeEEEEEeCCcccccCC
Confidence 5677899999999998876 3456799999999988 66 78899999999999988888873 33222
Q ss_pred cc--ccccChhhhhhcccCCCcEEEecCCCHHHHHHH--------------HHHHHHHHHcCCCCEEEEE
Q 019523 175 HL--RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV--------------AKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 175 ~~--~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a--------------~~~A~~~ar~~~gP~lIev 228 (339)
+. ...+.+++....++.|+.-+.|-..|+...... ++...+..|+.+|+++|..
T Consensus 545 Q~~~g~~~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~ 614 (1165)
T PRK09193 545 QPVDGGLSVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIY 614 (1165)
T ss_pred CCCCCCcchhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 11 122457888899999998886655555544322 2222222236788988876
No 145
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.53 E-value=0.00033 Score=76.52 Aligned_cols=121 Identities=19% Similarity=0.125 Sum_probs=80.6
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcc-cchHHHHHHHHHhCCCCEEEEEEcCCe-eec
Q 019523 95 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLW-AIG 172 (339)
Q Consensus 95 ~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~-~g~~~eal~~A~~~~Lpvi~vv~NN~~-~i~ 172 (339)
...++..||......+|.+-+ ..++.+++++|||.|. .| +-+|.-|...+.+++++|.+|.. +|.
T Consensus 490 ~~~~~~~MGgeg~~~~G~a~f-----------~~~~hv~aniGDgTffHSG--~~alr~AV~~~~nit~kIL~N~avAMT 556 (1186)
T PRK13029 490 STEGFSQMGGEGVAWIGQMPF-----------SRRRHVFQNLGDGTYFHSG--LLAIRQAIAAGVNITYKILYNDAVAMT 556 (1186)
T ss_pred ccceeeccCcchhhheeeccc-----------CCCCCEEEEeccccchhcC--HHHHHHHHhcCCCEEEEEEeCcchhcc
Confidence 345667899999999998876 3456799999999988 66 78899999999999999988873 332
Q ss_pred cccc--ccccChhhhhhcccCCCcEEEecCCCHHHHH--------------HHHHHHHHHHHcCCCCEEEEE
Q 019523 173 MSHL--RATSDPQIYKKGPAFGMPGFHVDGMDVLKVR--------------EVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 173 ~~~~--~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~--------------~a~~~A~~~ar~~~gP~lIev 228 (339)
..+. .....+.++...++.|+.-+.|-..|+..+. +.+....+..|+.+|+++|..
T Consensus 557 GgQp~~G~~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~ 628 (1186)
T PRK13029 557 GGQPVDGVLTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIY 628 (1186)
T ss_pred CCCCCCCcCCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 2111 1122334444778999988766333343332 222222223336788888866
No 146
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.85 E-value=0.0078 Score=50.58 Aligned_cols=105 Identities=18% Similarity=0.127 Sum_probs=65.2
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEe-CCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChh
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFF-GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ 183 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~-GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d 183 (339)
...+|.|.+.+ .. ..++++. |.|..+. .+.+..|...++||++|+-..+.... ... .....+
T Consensus 47 a~~~A~G~a~~-----------~~-~~v~~~~~gpg~~~~---~~~l~~a~~~~~Pvl~i~~~~~~~~~-~~~-~~q~~~ 109 (154)
T cd06586 47 AAGAAAGYARA-----------GG-PPVVIVTSGTGLLNA---INGLADAAAEHLPVVFLIGARGISAQ-AKQ-TFQSMF 109 (154)
T ss_pred HHHHHHHHHHh-----------hC-CEEEEEcCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCChhhh-ccC-cccccC
Confidence 34567777766 23 3333434 8886542 67788888999999999876652211 111 111223
Q ss_pred hhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 019523 184 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 184 ~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev 228 (339)
....++.+....+.+ .++.+..+.+.+|++.+...+||++|++
T Consensus 110 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 110 DLGMYRSIPEANISS--PSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HHHHHHHhhheEEEe--CCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 344555544444444 4555777788888888887889999976
No 147
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.76 E-value=0.013 Score=50.64 Aligned_cols=93 Identities=14% Similarity=0.023 Sum_probs=65.1
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++. .-++..|...++|+|+|.-+.....- ........|...+++.+--...+|+ ++.++.++
T Consensus 65 ~v~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~I~g~~~~~~~--~~~~~q~~d~~~~~~~~tk~~~~v~--~~~~~~~~ 137 (164)
T cd07039 65 GVCLGSSGPGAIHL---LNGLYDAKRDRAPVLAIAGQVPTDEL--GTDYFQEVDLLALFKDVAVYNETVT--SPEQLPEL 137 (164)
T ss_pred EEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCccccc--CCCCCcccCHHHHHHHhhcEEEEeC--CHHHHHHH
Confidence 45555667776663 56888999999999999876542211 1111122356667777766677776 55588888
Q ss_pred HHHHHHHHHcCCCCEEEEEE
Q 019523 210 AKEAIERARRGEGPTLVECE 229 (339)
Q Consensus 210 ~~~A~~~ar~~~gP~lIev~ 229 (339)
+++|++.++..+||+.|++.
T Consensus 138 i~~A~~~a~~~~GPV~l~iP 157 (164)
T cd07039 138 LDRAIRTAIAKRGVAVLILP 157 (164)
T ss_pred HHHHHHHHhcCCCCEEEEeC
Confidence 99999999888899999983
No 148
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.68 E-value=0.013 Score=49.57 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCCEEEEEEcCCe-eecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcC-CCCE
Q 019523 147 FECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPT 224 (339)
Q Consensus 147 ~eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~-~gP~ 224 (339)
..+|..|...++|+|+|.-+... ..+... .| ..|...+++.+--...+++ ++.++.+.+.+|++.+... ++|+
T Consensus 75 ~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~-~q--~~d~~~~~~~~~~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv 149 (155)
T cd07035 75 VTGLANAYLDSIPLLVITGQRPTAGEGRGA-FQ--EIDQVALFRPITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPV 149 (155)
T ss_pred HHHHHHHHhhCCCEEEEeCCCccccccCCc-cc--ccCHHHHHHHHhceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcE
Confidence 77899999999999999876541 111111 11 2344445555544466664 5568888999999999877 7899
Q ss_pred EEEE
Q 019523 225 LVEC 228 (339)
Q Consensus 225 lIev 228 (339)
.|++
T Consensus 150 ~l~i 153 (155)
T cd07035 150 ALDL 153 (155)
T ss_pred EEEe
Confidence 9987
No 149
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.64 E-value=0.039 Score=47.33 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=67.8
Q ss_pred ccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHH-hCCCCEEEEEEcCCeeecccccccccC
Q 019523 103 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA-LWKLPIVFVVENNLWAIGMSHLRATSD 181 (339)
Q Consensus 103 G~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~-~~~Lpvi~vv~NN~~~i~~~~~~~~~~ 181 (339)
+.+..+|.|..++ .++.++|+.+=|-. .....|..|. ..+.|+++|+-.-+. .+.....|...
T Consensus 44 e~aa~~aAg~~~~------------~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~-~~~~~~~q~~~ 107 (157)
T TIGR03845 44 EEGVGICAGAYLA------------GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGV-YKEKIPAQIPM 107 (157)
T ss_pred HHHHHHHHHHHHh------------cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCC-CCCCCccccch
Confidence 3445566666654 34566777777732 3477888888 999999999855441 11111111111
Q ss_pred hhhh-hhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 019523 182 PQIY-KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 182 ~d~~-~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev 228 (339)
..+. .....++++...++. ++++ .++.+|++.+.+.++|+.|-+
T Consensus 108 g~~~~~~l~~~~i~~~~i~~--~e~~-~~i~~A~~~a~~~~gPv~il~ 152 (157)
T TIGR03845 108 GRATPKLLDTLGIPYTIPRE--PEEA-KLIEKAISDAYENSRPVAALL 152 (157)
T ss_pred hhhhHHHHHHcCCCeEEeCC--HHHH-HHHHHHHHHHHhCCCCEEEEE
Confidence 1111 112345667888854 5688 899999999999999999876
No 150
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.54 E-value=0.022 Score=49.35 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=63.6
Q ss_pred CcEEEEEe--CCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHH
Q 019523 129 DHVTLAFF--GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 206 (339)
Q Consensus 129 ~~~vv~~~--GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v 206 (339)
+++.+|+. |=|.++. ..+|..|...+.|+|+|+-+-...... ........|...+++.+.-...++...+ ++
T Consensus 63 g~~~v~~~~~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~-~~~~q~~~d~~~~~~~~~k~~~~v~~~~--~~ 136 (172)
T PF02776_consen 63 GRPGVVIVTSGPGATNA---LTGLANAYADRIPVLVITGQRPSAGEG-RGAFQQEIDQQSLFRPVTKWSYRVTSPD--DL 136 (172)
T ss_dssp SSEEEEEEETTHHHHTT---HHHHHHHHHTT-EEEEEEEESSGGGTT-TTSTTSSTHHHHHHGGGSSEEEEECSGG--GH
T ss_pred ccceEEEeecccchHHH---HHHHhhcccceeeEEEEecccchhhhc-ccccccchhhcchhccccchhcccCCHH--HH
Confidence 34444444 4444442 567888899999999998776522211 1111123477778888887888887555 77
Q ss_pred HHHHHHHHHHH-HcCCCCEEEEEE
Q 019523 207 REVAKEAIERA-RRGEGPTLVECE 229 (339)
Q Consensus 207 ~~a~~~A~~~a-r~~~gP~lIev~ 229 (339)
.+.+++|++.+ ....+|++|++.
T Consensus 137 ~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 137 PEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp HHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred HHHHHHHHHHhccCCCccEEEEcC
Confidence 78889999998 678899999984
No 151
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=96.18 E-value=0.034 Score=47.85 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=60.9
Q ss_pred EEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCee-eccccc-cc-c--cC-hhhhhhcccCCCcEEEecCCCHHH
Q 019523 132 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHL-RA-T--SD-PQIYKKGPAFGMPGFHVDGMDVLK 205 (339)
Q Consensus 132 vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~-i~~~~~-~~-~--~~-~d~~~~a~a~G~~~~~Vdg~d~~~ 205 (339)
+++..|=|.++. .-+|..|...+.|+|+|+-+.... .+.... .+ . .. .|...+++.+.-...+|. ++.+
T Consensus 63 ~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~~~~ 137 (162)
T cd07038 63 LVTTYGVGELSA---LNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLT--DPEN 137 (162)
T ss_pred EEEcCCccHHHH---HHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeC--CHHH
Confidence 333346665552 568889999999999998765421 111110 00 0 11 145566776666677775 4558
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEE
Q 019523 206 VREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 206 v~~a~~~A~~~ar~~~gP~lIev 228 (339)
+.+.+++|++.+..++||++|++
T Consensus 138 i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 138 AAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEc
Confidence 88889999999999889999987
No 152
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=95.86 E-value=0.05 Score=46.25 Aligned_cols=91 Identities=27% Similarity=0.217 Sum_probs=59.4
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCee-ecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~-i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
.+++..|-|.++. ...|..|...+.|+|+|+-+.... .+.+ .......+.....+. ..+..++ .++.++.+.
T Consensus 67 v~~~~~gpG~~n~---~~~l~~a~~~~~P~v~i~g~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~ 139 (160)
T cd07034 67 AMTATSGPGLNLM---AEALYLAAGAELPLVIVVAQRPGPSTGLP-KPDQSDLMAARYGGH-PWPVLAP--SSVQEAFDL 139 (160)
T ss_pred EEEeeCcchHHHH---HHHHHHHHhCCCCEEEEEeeCCCCCCCCC-CcCcHHHHHHHhCCC-CEEEEeC--CCHHHHHHH
Confidence 5566667777663 567888888899999998765421 1211 101111233334444 4555565 467799999
Q ss_pred HHHHHHHHHcCCCCEEEEE
Q 019523 210 AKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 210 ~~~A~~~ar~~~gP~lIev 228 (339)
+++|++.++..++|++|.+
T Consensus 140 ~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 140 ALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHHHHHHhCCCEEEEc
Confidence 9999999999889999865
No 153
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=95.76 E-value=0.069 Score=51.89 Aligned_cols=114 Identities=19% Similarity=0.131 Sum_probs=80.1
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhh
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 184 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~ 184 (339)
++.+|+|++++ +.++++.+-++++.-. +|.|.+|+-..+|+++++.+-. +-++.. .+....|.
T Consensus 60 A~~~a~GAs~a-------------G~Ra~taTSg~Gl~lm--~E~l~~a~~~e~P~v~v~v~R~-~p~~g~-t~~eq~D~ 122 (352)
T PRK07119 60 AINMVYGAAAT-------------GKRVMTSSSSPGISLK--QEGISYLAGAELPCVIVNIMRG-GPGLGN-IQPSQGDY 122 (352)
T ss_pred HHHHHHHHHhh-------------CCCEEeecCcchHHHH--HHHHHHHHHccCCEEEEEeccC-CCCCCC-CcchhHHH
Confidence 56789999988 5678888888888755 8999999999999888877754 222211 11111232
Q ss_pred --hhhcccCC-CcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCC
Q 019523 185 --YKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 237 (339)
Q Consensus 185 --~~~a~a~G-~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~ 237 (339)
+.+..++| .+.+..+..|+.++++-...|++.+.+.+-|+++-...+ .+|+
T Consensus 123 ~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~ 176 (352)
T PRK07119 123 FQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQM 176 (352)
T ss_pred HHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCc
Confidence 22222333 344566778999999999999999988889999987763 3564
No 154
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=95.58 E-value=0.094 Score=51.40 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=78.5
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCe-eecccccccccChh
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQ 183 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~~~~~d 183 (339)
++.+|+|++++ +.++++.+-=+++.-- +|.+.+++-..+|+|+++.+..- +.+.++.......+
T Consensus 60 A~~~a~GAs~a-------------G~Ra~TaTSg~Gl~lm--~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~~q~D~~ 124 (376)
T PRK08659 60 SMAAVIGASWA-------------GAKAMTATSGPGFSLM--QENIGYAAMTETPCVIVNVQRGGPSTGQPTKPAQGDMM 124 (376)
T ss_pred HHHHHHhHHhh-------------CCCeEeecCCCcHHHH--HHHHHHHHHcCCCEEEEEeecCCCCCCCCCCcCcHHHH
Confidence 56789999988 4456555555555533 78999999999998888887651 12333322212222
Q ss_pred hhhhcccCC-CcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCC
Q 019523 184 IYKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 238 (339)
Q Consensus 184 ~~~~a~a~G-~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~ 238 (339)
. .+.-++| .+.+.....|+.++++-...|++.+.+.+-|++|-...+ .+|+.
T Consensus 125 ~-~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~ 177 (376)
T PRK08659 125 Q-ARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMR 177 (376)
T ss_pred H-HhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCc
Confidence 2 2333444 444666788999999999999999988889999988773 66653
No 155
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.47 E-value=0.15 Score=43.98 Aligned_cols=94 Identities=10% Similarity=0.041 Sum_probs=57.7
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCC----HHHH
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMD----VLKV 206 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d----~~~v 206 (339)
.+++..|=|.++. .-++..|...+.|+|+|+-+-..........| ..|...+++.+--...+|...+ ...+
T Consensus 63 v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~ 137 (162)
T cd07037 63 AVVCTSGTAVANL---LPAVVEAYYSGVPLLVLTADRPPELRGTGANQ--TIDQVGLFGDYVRWSVDLPPPEDDDDLWYL 137 (162)
T ss_pred EEEECCchHHHHH---hHHHHHHHhcCCCEEEEECCCCHHhcCCCCCc--ccchhhhccceeeEEEecCCcccchhHHHH
Confidence 4445556666652 56788999999999999876432211111112 2344455565555556664333 1116
Q ss_pred HHHHHHHHHHHHcCC-CCEEEEEE
Q 019523 207 REVAKEAIERARRGE-GPTLVECE 229 (339)
Q Consensus 207 ~~a~~~A~~~ar~~~-gP~lIev~ 229 (339)
.+.+++|+..++.++ ||++|++.
T Consensus 138 ~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 138 LRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred HHHHHHHHHHHhCCCCCCEEEecc
Confidence 677888999988865 89999873
No 156
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=94.88 E-value=0.16 Score=49.48 Aligned_cols=113 Identities=13% Similarity=0.136 Sum_probs=72.1
Q ss_pred cccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccc-hHHHHHHHHHhCCCCEEEEEEcCCeeeccccccccc
Q 019523 102 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG-QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS 180 (339)
Q Consensus 102 lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g-~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~ 180 (339)
=|.++++|.|+.+| .+++.++++=-.++... -.+.+|.....|++|++++|-.-++ .+.....|..
T Consensus 35 E~~av~iaaG~~la------------tG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~-~g~~depqh~ 101 (361)
T TIGR03297 35 EGAAVGLAAGAYLA------------TGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGE-PGVHDEPQHV 101 (361)
T ss_pred chHHHHHHHHHHHh------------cCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCC-CCCCCCchhh
Confidence 46688889999988 34445555433333211 0122333356799999999887762 2322222211
Q ss_pred --ChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 019523 181 --DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 181 --~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev 228 (339)
..-..++.+++++++..++. +.++....+..|++.+.+.++|+.|-+
T Consensus 102 ~~G~~t~~lL~~~~i~~~~~~~-~~~~~~~~~~~a~~~~~~~~~p~a~l~ 150 (361)
T TIGR03297 102 KQGRITLSLLDALEIPWEVLST-DNDEALAQIERALAHALATSRPYALVV 150 (361)
T ss_pred HHhHHHHHHHHHcCCCEEECCC-ChHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 12234567899999999953 344777788999999999999998877
No 157
>PRK08611 pyruvate oxidase; Provisional
Probab=94.27 E-value=0.37 Score=49.87 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=65.0
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++. .-++..|-..+.|||+|.-.-...... .......|...+++.+--...+|+ ++.++.+.
T Consensus 70 gv~~~t~GPG~~N~---l~gla~A~~~~~Pvl~ItG~~~~~~~~--~~~~q~~d~~~l~~~itk~~~~v~--~~~~~~~~ 142 (576)
T PRK08611 70 GVCLSIGGPGAIHL---LNGLYDAKMDHVPVLALAGQVTSDLLG--TDFFQEVNLEKMFEDVAVYNHQIM--SAENLPEI 142 (576)
T ss_pred eEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCcccccC--CCCccccCHHHHhhcccceeEEeC--CHHHHHHH
Confidence 45555668887763 457889999999999998765422111 111112356667776665566775 55588888
Q ss_pred HHHHHHHHHcCCCCEEEEEEE
Q 019523 210 AKEAIERARRGEGPTLVECET 230 (339)
Q Consensus 210 ~~~A~~~ar~~~gP~lIev~t 230 (339)
+.+|++.+...+||++|++..
T Consensus 143 l~~A~~~A~~~~GPV~l~iP~ 163 (576)
T PRK08611 143 VNQAIRTAYEKKGVAVLTIPD 163 (576)
T ss_pred HHHHHHHHhhCCCCEEEEeCh
Confidence 999999988888999999943
No 158
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=94.06 E-value=0.34 Score=47.48 Aligned_cols=116 Identities=19% Similarity=0.188 Sum_probs=77.5
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccccccChh
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQ 183 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~~~~~d 183 (339)
++.+|+|+++| +.++++.+-=+++.-- .|.+.+++-..+|+++++.+-. -+.+.+.......+
T Consensus 59 A~~~a~GAs~a-------------G~Ra~taTSg~G~~lm--~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~- 122 (375)
T PRK09627 59 GISVALGASMS-------------GVKSMTASSGPGISLK--AEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDV- 122 (375)
T ss_pred HHHHHHHHHhh-------------CCCEEeecCCchHHHH--hhHHHHHHhccCCEEEEEeccCCCcCCCCCccchHHH-
Confidence 56789999988 4455555544555533 7899999999999888877753 22333433221222
Q ss_pred hhhhcccCC-CcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCC
Q 019523 184 IYKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 238 (339)
Q Consensus 184 ~~~~a~a~G-~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~ 238 (339)
...+...+| .+-+.....|+.+++.....|++.+.+.+-|++|-... .-+|+.
T Consensus 123 ~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~--~lsh~~ 176 (375)
T PRK09627 123 NQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE--TVGHMY 176 (375)
T ss_pred HHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch--HHhCCe
Confidence 222333343 23456688899999999999999999899999997766 336653
No 159
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=94.01 E-value=0.3 Score=50.43 Aligned_cols=111 Identities=19% Similarity=0.163 Sum_probs=75.0
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecc--cccccccCh
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM--SHLRATSDP 182 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~--~~~~~~~~~ 182 (339)
++.+|+|+++| +.++++.+-=.+++-- .|.|.+|+-..+|+|+++.+.. +.++ ++.....+.
T Consensus 249 A~~~a~GAs~a-------------G~Ra~taTSg~Gl~lm--~E~l~~a~~~~~P~Vi~~~~R~-gpstg~~t~~eq~D~ 312 (562)
T TIGR03710 249 AINMAIGASYA-------------GARAMTATSGPGFALM--TEALGLAGMTETPLVIVDVQRG-GPSTGLPTKTEQSDL 312 (562)
T ss_pred HHHHHHhHHhc-------------CCceeecCCCCChhHh--HHHHhHHHhccCCEEEEEcccC-CCCCCCCCCccHHHH
Confidence 56788999988 4445555544455522 7899999999999888887775 4443 322221211
Q ss_pred hhhhhcccCC-CcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 183 QIYKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 183 d~~~~a~a~G-~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
.+ .+.-++| .+.+.....|+.++++....|++.+.+..-|+++-...+.
T Consensus 313 ~~-~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l 362 (562)
T TIGR03710 313 LF-ALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL 362 (562)
T ss_pred HH-HhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence 22 2333332 3345667788999999999999999999999999887664
No 160
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=94.00 E-value=0.31 Score=47.96 Aligned_cols=95 Identities=24% Similarity=0.186 Sum_probs=58.2
Q ss_pred CCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHH
Q 019523 127 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 206 (339)
Q Consensus 127 ~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v 206 (339)
+...+|++..|-|+++- ..-|.-|-.-+.|++++ ..+..-+.+........|+..+.+++-=.-+-| .|++++
T Consensus 153 gKPGvvlvTSGPGATNv---vtp~ADAlaDg~PlVvf--tGQVptsaIGtDAFQEadiVgisRScTKwNvmV--kdVedl 225 (675)
T KOG4166|consen 153 GKPGVVLVTSGPGATNV---VTPLADALADGVPLVVF--TGQVPTSAIGTDAFQEADIVGISRSCTKWNVMV--KDVEDL 225 (675)
T ss_pred CCCcEEEEecCCCcccc---cchhhHHhhcCCcEEEE--ecccchhhcccchhccCCeeeeeeccceeheee--ecHHHh
Confidence 34568999999999983 22466666778886544 233222222222222345555555543222223 477788
Q ss_pred HHHHHHHHHHHHcC-CCCEEEEE
Q 019523 207 REVAKEAIERARRG-EGPTLVEC 228 (339)
Q Consensus 207 ~~a~~~A~~~ar~~-~gP~lIev 228 (339)
-+-+.+|++.|-.+ .||+|+++
T Consensus 226 PrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 226 PRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred hHHHHHHhhhhccCCCCCeEeeC
Confidence 88889999988764 48999988
No 161
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=93.99 E-value=0.39 Score=49.38 Aligned_cols=95 Identities=11% Similarity=0.013 Sum_probs=63.2
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++. .-++..|-.-+.|||+|+-.-....- ........|...+++.+--...+|. ++.++...
T Consensus 66 gv~~~t~GPG~~N~---l~~l~~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~l~~~vtk~~~~v~--~~~~~~~~ 138 (549)
T PRK06457 66 SACMGTSGPGSIHL---LNGLYDAKMDHAPVIALTGQVESDMI--GHDYFQEVNLTKLFDDVAVFNQILI--NPENAEYI 138 (549)
T ss_pred eEEEeCCCCchhhh---HHHHHHHHhcCCCEEEEecCCCcccc--CCCcccccchhhhhccceeEEEEeC--CHHHHHHH
Confidence 35556668887763 55788999999999999865431110 0111112355566665554555664 45588888
Q ss_pred HHHHHHHHHcCCCCEEEEEEEe
Q 019523 210 AKEAIERARRGEGPTLVECETY 231 (339)
Q Consensus 210 ~~~A~~~ar~~~gP~lIev~t~ 231 (339)
+++|++.|...+||++|++...
T Consensus 139 i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 139 IRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred HHHHHHHHhcCCCCEEEEeCHh
Confidence 9999998888889999999543
No 162
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=93.85 E-value=0.4 Score=49.30 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=65.2
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
.++++..|=|.++. ..++..|...+.|||+|+-......-..........|...+++.+--...+|+ ++.++.+.
T Consensus 67 gv~~~t~GPG~~N~---~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 141 (554)
T TIGR03254 67 GVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVL--RAEDIGIG 141 (554)
T ss_pred EEEEEccCccHHhH---HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcC--CHHHHHHH
Confidence 45566668887773 56789999999999999865442210000111123356677777766677886 45688888
Q ss_pred HHHHHHHHHcC-CCCEEEEEEE
Q 019523 210 AKEAIERARRG-EGPTLVECET 230 (339)
Q Consensus 210 ~~~A~~~ar~~-~gP~lIev~t 230 (339)
+.+|++.+..+ .||+.|++..
T Consensus 142 i~rA~~~A~~~~pGPV~l~iP~ 163 (554)
T TIGR03254 142 IARAIRTAVSGRPGGVYLDLPA 163 (554)
T ss_pred HHHHHHHHhcCCCCcEEEEcCH
Confidence 99999998875 4899999943
No 163
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=93.51 E-value=0.62 Score=45.89 Aligned_cols=110 Identities=16% Similarity=0.087 Sum_probs=73.6
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhh
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 184 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~ 184 (339)
++.+|+|+++| +.++.+.+-=++++-- +|.|.+|+-..+|+|+++.|-. ..++-.......|+
T Consensus 61 A~~~aiGAs~a-------------GaRa~TaTSg~Gl~lm--~E~l~~aa~~~lPiVi~~~~R~--~p~~~~~~~~q~D~ 123 (390)
T PRK08366 61 AMAACIGASAA-------------GARAFTATSAQGLALM--HEMLHWAAGARLPIVMVDVNRA--MAPPWSVWDDQTDS 123 (390)
T ss_pred HHHHHHHHHhh-------------CCCeEeeeCcccHHHH--hhHHHHHHhcCCCEEEEEeccC--CCCCCCCcchhhHH
Confidence 56789999988 4456666655556633 8999999999999888877553 22222211112233
Q ss_pred hhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC
Q 019523 185 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 234 (339)
Q Consensus 185 ~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~ 234 (339)
.. ++--|+ +..-..|+.+.+.....|++.+.+..-|+++-...++..
T Consensus 124 ~~-~~d~g~--i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s 170 (390)
T PRK08366 124 LA-QRDTGW--MQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS 170 (390)
T ss_pred HH-HhhcCE--EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc
Confidence 21 122244 444557888999889999999988999999988666543
No 164
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=93.47 E-value=0.27 Score=44.87 Aligned_cols=113 Identities=19% Similarity=0.119 Sum_probs=65.6
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhh
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 184 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~ 184 (339)
++.+++|++++ +.++++.+-=.+++-- .|.|.+++-.++|+++++.|-. +-++.-..+....|+
T Consensus 48 A~~~~~GAs~a-------------G~ra~t~ts~~Gl~lm--~e~l~~a~~~~~P~V~~~~~R~-g~~~g~~~~~~q~D~ 111 (230)
T PF01855_consen 48 AMEAAIGASAA-------------GARAMTATSGPGLNLM--AEPLYWAAGTELPIVIVVVQRA-GPSPGLSTQPEQDDL 111 (230)
T ss_dssp HHHHHHHHHHT-------------T--EEEEEECCHHHHH--CCCHHHHHHTT--EEEEEEEB----SSSB--SB-SHHH
T ss_pred HHHHHHHHHhc-------------CCceEEeecCCccccc--HhHHHHHHHcCCCEEEEEEECC-CCCCCCcCcCChhHH
Confidence 56778888887 3445554444444422 6779999999999888887754 222101111112233
Q ss_pred hhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCC
Q 019523 185 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 237 (339)
Q Consensus 185 ~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~ 237 (339)
. .++-+|+..+ ...|+.+.++-...|++.+.+..-|+++-...++. .|+
T Consensus 112 ~-~~~d~~~~vl--~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~ 160 (230)
T PF01855_consen 112 M-AARDSGWIVL--APSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHS 160 (230)
T ss_dssp H-HTTTSS-EEE--E--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-
T ss_pred H-HHHhcCeEEE--eCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCc
Confidence 2 2235566544 45678899998999999999999999997776654 254
No 165
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=93.44 E-value=0.63 Score=47.99 Aligned_cols=93 Identities=20% Similarity=0.270 Sum_probs=60.7
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHH
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 210 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~ 210 (339)
.+++..|=|.++- .-++..|...+.|||+|.-.-....-. .......|...+++.+--...+|+ ++.++...+
T Consensus 79 v~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~~~~v~--~~~~~~~~i 151 (564)
T PRK08155 79 VCMACSGPGATNL---VTAIADARLDSIPLVCITGQVPASMIG--TDAFQEVDTYGISIPITKHNYLVR--DIEELPQVI 151 (564)
T ss_pred EEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeccCCccccc--CCCccccchhhhhhccceEEEEcC--CHHHHHHHH
Confidence 3444557777662 557888999999999997543311100 011112244455555544556664 677888899
Q ss_pred HHHHHHHHcC-CCCEEEEEEE
Q 019523 211 KEAIERARRG-EGPTLVECET 230 (339)
Q Consensus 211 ~~A~~~ar~~-~gP~lIev~t 230 (339)
.+|++.++.. .||+.|++..
T Consensus 152 ~~A~~~a~~~~~GPV~i~iP~ 172 (564)
T PRK08155 152 SDAFRIAQSGRPGPVWIDIPK 172 (564)
T ss_pred HHHHHHHhcCCCCcEEEEcCH
Confidence 9999999887 4999999954
No 166
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.37 E-value=0.51 Score=48.81 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=65.0
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++. .-++..|-..+.|||+|+-.-.... .........|...+++.+--...+|. ++.++.+.
T Consensus 79 gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~d~~~l~~~itk~~~~v~--~~~~i~~~ 151 (570)
T PRK06725 79 GVVFATSGPGATNL---VTGLADAYMDSIPLVVITGQVATPL--IGKDGFQEADVVGITVPVTKHNYQVR--DVNQLSRI 151 (570)
T ss_pred eEEEECCCccHHHH---HHHHHHHhhcCcCEEEEecCCCccc--ccCCCCcccchhhhhhccceeEEEcC--CHHHHHHH
Confidence 45566668887762 5578888999999999975433111 01111122466677777766677775 56688889
Q ss_pred HHHHHHHHHcCC-CCEEEEEEEe
Q 019523 210 AKEAIERARRGE-GPTLVECETY 231 (339)
Q Consensus 210 ~~~A~~~ar~~~-gP~lIev~t~ 231 (339)
+++|++.|+.++ ||++|++...
T Consensus 152 l~~A~~~A~s~~~GPV~l~iP~D 174 (570)
T PRK06725 152 VQEAFYIAESGRPGPVLIDIPKD 174 (570)
T ss_pred HHHHHHHHhcCCCCcEEEccccc
Confidence 999999998865 8999999543
No 167
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=93.33 E-value=0.61 Score=48.27 Aligned_cols=93 Identities=22% Similarity=0.241 Sum_probs=62.2
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..+++..|=|.++. .-+|..|-..+.|||+|.-.-. ..++.. .....|...+++.+--...+|. ++.++.+
T Consensus 66 gv~~~t~GPG~~N~---~~gla~A~~~~~Pvl~I~g~~~~~~~~~~---~~Q~~d~~~l~~~vtk~~~~v~--~~~~~~~ 137 (579)
T TIGR03457 66 SMVIGQNGPGVTNC---VTAIAAAYWAHTPVVIVTPEAGTKTIGLG---GFQEADQLPMFQEFTKYQGHVR--HPSRMAE 137 (579)
T ss_pred EEEEECCCchHHHH---HHHHHHHhhcCCCEEEEeCCCccccCCCC---CCcccchhhhhhcceeEEEecC--CHHHHHH
Confidence 44555668887762 4578899999999999963321 111111 1112355566666555556664 5568888
Q ss_pred HHHHHHHHHHcCCCCEEEEEEE
Q 019523 209 VAKEAIERARRGEGPTLVECET 230 (339)
Q Consensus 209 a~~~A~~~ar~~~gP~lIev~t 230 (339)
.+++|++.|..++||++|++..
T Consensus 138 ~i~~A~~~A~~~~GPV~l~iP~ 159 (579)
T TIGR03457 138 VLNRCFERAWREMGPAQLNIPR 159 (579)
T ss_pred HHHHHHHHHhcCCCCEEEEeCc
Confidence 8999999999888999999953
No 168
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.25 E-value=0.58 Score=48.84 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=62.7
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCe-eecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
.++++..|=|.++. ...|..|..-+.|||+|+-+-.. .++.. .....|...+++.+--...+|+ +++++..
T Consensus 87 gv~~~t~GPG~~n~---l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~---~~Qe~d~~~~~~~vtk~~~~v~--~~~~i~~ 158 (616)
T PRK07418 87 GVCFGTSGPGATNL---VTGIATAQMDSVPMVVITGQVPRPAIGTD---AFQETDIFGITLPIVKHSYVVR--DPSDMAR 158 (616)
T ss_pred eEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCCC---CcccccHHHHhhhcceeEEEeC--CHHHHHH
Confidence 35555668887763 56789999999999999764321 11111 1112355556665554455665 5568888
Q ss_pred HHHHHHHHHHcCC-CCEEEEEEE
Q 019523 209 VAKEAIERARRGE-GPTLVECET 230 (339)
Q Consensus 209 a~~~A~~~ar~~~-gP~lIev~t 230 (339)
.+.+|++.|...+ ||++|++..
T Consensus 159 ~l~~A~~~A~~~~~GPv~l~iP~ 181 (616)
T PRK07418 159 IVAEAFHIASSGRPGPVLIDIPK 181 (616)
T ss_pred HHHHHHHHHhcCCCCcEEEecch
Confidence 9999999998876 999999854
No 169
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.25 E-value=0.55 Score=48.54 Aligned_cols=95 Identities=20% Similarity=0.208 Sum_probs=65.3
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++. ..++..|...+.|||+|+-.-....- ........|...+++.+--...+|. +++++...
T Consensus 69 gv~~~t~GPG~~n~---l~gi~~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~l~~~~tk~~~~v~--~~~~~~~~ 141 (574)
T PRK07979 69 GVVLVTSGPGATNA---ITGIATAYMDSIPLVVLSGQVATSLI--GYDAFQECDMVGISRPVVKHSFLVK--QTEDIPQV 141 (574)
T ss_pred eEEEECCCccHhhh---HHHHHHHhhcCCCEEEEECCCChhcc--CCCCCceecHHHHhhcccceEEEeC--CHHHHHHH
Confidence 45666678887762 55788999999999999765431110 1111122455666777666667775 56688889
Q ss_pred HHHHHHHHHcCC-CCEEEEEEEe
Q 019523 210 AKEAIERARRGE-GPTLVECETY 231 (339)
Q Consensus 210 ~~~A~~~ar~~~-gP~lIev~t~ 231 (339)
+++|++.|..++ ||++|++...
T Consensus 142 l~~A~~~A~~~~~GPv~l~iP~D 164 (574)
T PRK07979 142 LKKAFWLAASGRPGPVVVDLPKD 164 (574)
T ss_pred HHHHHHHHccCCCCcEEEEcChh
Confidence 999999988875 9999999544
No 170
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=93.19 E-value=0.87 Score=46.75 Aligned_cols=93 Identities=27% Similarity=0.294 Sum_probs=63.3
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCe-eecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..+++..|=|.++. .-++..|..-+.|||+|.-.-.. .++.. ..| ..|...+++.+--...+|+ ++.++..
T Consensus 65 gv~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~~~~~~tk~~~~v~--~~~~~~~ 136 (548)
T PRK08978 65 GVCIATSGPGATNL---ITGLADALLDSVPVVAITGQVSSPLIGTD-AFQ--EIDVLGLSLACTKHSFLVQ--SLEELPE 136 (548)
T ss_pred EEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC-CCc--ccchhccccCceeeEEEEC--CHHHHHH
Confidence 45566668877762 56888999999999999754431 11111 111 2355556666655666775 5668888
Q ss_pred HHHHHHHHHHcC-CCCEEEEEEE
Q 019523 209 VAKEAIERARRG-EGPTLVECET 230 (339)
Q Consensus 209 a~~~A~~~ar~~-~gP~lIev~t 230 (339)
.+++|++.|+.. .||+.|++..
T Consensus 137 ~i~~A~~~A~~~~~GPV~l~iP~ 159 (548)
T PRK08978 137 IMAEAFEIASSGRPGPVLVDIPK 159 (548)
T ss_pred HHHHHHHHHhcCCCCcEEEecCh
Confidence 999999988886 4999999954
No 171
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=93.14 E-value=0.65 Score=48.20 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=61.5
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..+++..|=|.++. ...+..|-..+.|||+|+-.-. ..++.. ..| ..|...+++.+--...+|. ++.++.+
T Consensus 70 gv~~~t~GPG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-~~q--~~d~~~l~~~~tk~~~~i~--~~~~~~~ 141 (588)
T PRK07525 70 GMVIGQNGPGITNF---VTAVATAYWAHTPVVLVTPQAGTKTIGQG-GFQ--EAEQMPMFEDMTKYQEEVR--DPSRMAE 141 (588)
T ss_pred EEEEEcCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCcccCCCC-CCc--ccchhhhhhhheeEEEECC--CHHHHHH
Confidence 45566668887762 4578889999999999983221 011110 011 1244456665544555664 5568888
Q ss_pred HHHHHHHHHHcCCCCEEEEEEE
Q 019523 209 VAKEAIERARRGEGPTLVECET 230 (339)
Q Consensus 209 a~~~A~~~ar~~~gP~lIev~t 230 (339)
.+.+|++.|+..+||+.|++..
T Consensus 142 ~i~rA~~~A~~~~GPV~i~iP~ 163 (588)
T PRK07525 142 VLNRVFDKAKRESGPAQINIPR 163 (588)
T ss_pred HHHHHHHHHhcCCCCEEEEcCh
Confidence 9999999999999999999953
No 172
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.05 E-value=0.62 Score=48.17 Aligned_cols=95 Identities=20% Similarity=0.236 Sum_probs=65.1
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++. .-++..|-.-+.|||+|.-.-....-.. ......|...+++.+--...+|+ ++.++...
T Consensus 69 gv~~vt~GPG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~itk~s~~v~--~~~~~~~~ 141 (574)
T PRK06466 69 GVVLVTSGPGATNA---ITGIATAYMDSIPMVVLSGQVPSTLIGE--DAFQETDMVGISRPIVKHSFMVK--HASEIPEI 141 (574)
T ss_pred EEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCC--CcccccchhhhhhccceeEEEcC--CHHHHHHH
Confidence 45666668887762 5688899999999999986543221110 11112355667776665666775 56688888
Q ss_pred HHHHHHHHHcCC-CCEEEEEEEe
Q 019523 210 AKEAIERARRGE-GPTLVECETY 231 (339)
Q Consensus 210 ~~~A~~~ar~~~-gP~lIev~t~ 231 (339)
+++|+..|+.++ ||+.|++...
T Consensus 142 ~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 142 IKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred HHHHHHHHhcCCCCcEEEEcCHh
Confidence 999999988874 9999999554
No 173
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=93.05 E-value=0.94 Score=46.77 Aligned_cols=93 Identities=17% Similarity=0.102 Sum_probs=62.5
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHH
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 210 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~ 210 (339)
++++..|=|.++. .-++..|-..+.|||+|.-.-....-. .......|...+++.+--...+|+ ++.++.+.+
T Consensus 71 v~~~t~GpG~~N~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~i~~~~tk~~~~v~--~~~~~~~~l 143 (572)
T PRK06456 71 VCTATSGPGTTNL---VTGLITAYWDSSPVIAITGQVPRSVMG--KMAFQEADAMGVFENVTKYVIGIK--RIDEIPQWI 143 (572)
T ss_pred EEEeCCCCCHHHH---HHHHHHHHhhCCCEEEEecCCCccccC--CCCccccchhhhhhccceeEEEeC--CHHHHHHHH
Confidence 4444568887762 567889999999999997554311110 111112355566666666666774 566888889
Q ss_pred HHHHHHHHcCC-CCEEEEEEE
Q 019523 211 KEAIERARRGE-GPTLVECET 230 (339)
Q Consensus 211 ~~A~~~ar~~~-gP~lIev~t 230 (339)
.+|++.|+.++ ||+.|++..
T Consensus 144 ~~A~~~A~~~~~GPV~l~iP~ 164 (572)
T PRK06456 144 KNAFYIATTGRPGPVVIDIPR 164 (572)
T ss_pred HHHHHHHhcCCCCcEEEecCh
Confidence 99999888865 999999953
No 174
>PRK07524 hypothetical protein; Provisional
Probab=93.02 E-value=0.7 Score=47.29 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=64.9
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCe-eecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..+++..|=|.++. ..++..|-..+.|||+|+-.... ..+..........|...+++.+--...+|. ++.++.+
T Consensus 66 gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~--~~~~~~~ 140 (535)
T PRK07524 66 GVCFIITGPGMTNI---ATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLM--SAEDLPE 140 (535)
T ss_pred eEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeC--CHHHHHH
Confidence 35556667777763 56788999999999999854431 111100000112356667777766667775 4558888
Q ss_pred HHHHHHHHHHcC-CCCEEEEEEEe
Q 019523 209 VAKEAIERARRG-EGPTLVECETY 231 (339)
Q Consensus 209 a~~~A~~~ar~~-~gP~lIev~t~ 231 (339)
.+.+|++.|+.. .||++|++..+
T Consensus 141 ~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 141 VLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred HHHHHHHHHhcCCCCcEEEEeCHh
Confidence 999999999876 69999999543
No 175
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.00 E-value=0.48 Score=48.80 Aligned_cols=96 Identities=22% Similarity=0.194 Sum_probs=68.3
Q ss_pred CCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccccccChhhhhhcccCCCcEEEecCCCHHH
Q 019523 127 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLK 205 (339)
Q Consensus 127 ~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~ 205 (339)
+.-.++++..|=|+++- .-.|.+|-.-+.|+|.|.-.=. ..++. ......|...+++.+--..++|. ++++
T Consensus 63 GkpgV~~~tsGPGatN~---~tgla~A~~d~~Pll~itGqv~~~~~g~---~afQe~D~~~l~~p~tk~~~~v~--~~~~ 134 (550)
T COG0028 63 GKPGVCLVTSGPGATNL---LTGLADAYMDSVPLLAITGQVPTSLIGT---DAFQEVDQVGLFRPITKYNFEVR--SPED 134 (550)
T ss_pred CCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCccccccCc---chhhhcchhhHhhhhheeEEEeC--CHHH
Confidence 34568888999999872 4468899999999988865221 11111 11123366777777666677775 4568
Q ss_pred HHHHHHHHHHHHHcCC-CCEEEEEEE
Q 019523 206 VREVAKEAIERARRGE-GPTLVECET 230 (339)
Q Consensus 206 v~~a~~~A~~~ar~~~-gP~lIev~t 230 (339)
+-+.+++|++.|..++ ||++|++..
T Consensus 135 ip~~i~~Af~~A~sgrpGpv~i~iP~ 160 (550)
T COG0028 135 IPEVVARAFRIALSGRPGPVVVDLPK 160 (550)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEcCh
Confidence 8899999999999877 999999943
No 176
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=92.99 E-value=0.58 Score=48.61 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=63.2
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHH
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 210 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~ 210 (339)
++++..|=|.++. .-.|..|...+.|||+|+-.-...... .......|...+++.+--...+|. ++.++.+.+
T Consensus 70 v~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~D~~~~~~~vtk~~~~v~--~~~~i~~~i 142 (588)
T TIGR01504 70 VCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLH--KEDFQAVDIAAIAKPVSKMAVTVR--EAALVPRVL 142 (588)
T ss_pred EEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccC--CCcccccCHHHHhhhhceEEEEcC--CHHHHHHHH
Confidence 3344457777662 557888999999999998554322111 111122356667777666666775 566888899
Q ss_pred HHHHHHHHcCC-CCEEEEEEEe
Q 019523 211 KEAIERARRGE-GPTLVECETY 231 (339)
Q Consensus 211 ~~A~~~ar~~~-gP~lIev~t~ 231 (339)
++|++.|+.++ ||++|++...
T Consensus 143 ~~A~~~A~~~~~GPV~l~iP~D 164 (588)
T TIGR01504 143 QQAFHLMRSGRPGPVLIDLPFD 164 (588)
T ss_pred HHHHHHHccCCCCeEEEEeCcc
Confidence 99999988765 8999999544
No 177
>PRK07064 hypothetical protein; Provisional
Probab=92.98 E-value=0.75 Score=47.15 Aligned_cols=96 Identities=20% Similarity=0.139 Sum_probs=63.7
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..+++..|=|.++. .-++..|-.-+.|||+|+-+-. ..++..........|...+++.+--...+|+ ++.++.+
T Consensus 68 ~v~~~t~GpG~~N~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~~~~~~~ 142 (544)
T PRK07064 68 GVALTSTGTGAGNA---AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVR--SAETALA 142 (544)
T ss_pred eEEEeCCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcceEEEeC--CHHHHHH
Confidence 45556668887763 5678899999999999986422 1122111000012355666666655666775 4568888
Q ss_pred HHHHHHHHHHcC-CCCEEEEEEE
Q 019523 209 VAKEAIERARRG-EGPTLVECET 230 (339)
Q Consensus 209 a~~~A~~~ar~~-~gP~lIev~t 230 (339)
.+.+|++.+... .||+.|++..
T Consensus 143 ~i~~A~~~a~~~~~GPV~l~iP~ 165 (544)
T PRK07064 143 TIREAVRVALTAPTGPVSVEIPI 165 (544)
T ss_pred HHHHHHHHhccCCCCcEEEEeCH
Confidence 899999988886 7999999953
No 178
>PLN02470 acetolactate synthase
Probab=92.77 E-value=0.89 Score=47.15 Aligned_cols=94 Identities=28% Similarity=0.294 Sum_probs=63.3
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCe-eecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..+++..|=|.++. .-.+..|-..+.|||+|.-.-.. .++. ......|...+++.+--...+|. ++.++.+
T Consensus 78 gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~l~~~~tk~~~~v~--~~~~i~~ 149 (585)
T PLN02470 78 GVCIATSGPGATNL---VTGLADALLDSVPLVAITGQVPRRMIGT---DAFQETPIVEVTRSITKHNYLVM--DVEDIPR 149 (585)
T ss_pred EEEEECCCccHHHH---HHHHHHHHhcCCcEEEEecCCChhhcCC---CcCcccchhhhhhhheEEEEEcC--CHHHHHH
Confidence 45566678887763 55788899999999999754431 1111 11112344556666555566674 6678889
Q ss_pred HHHHHHHHHHcCC-CCEEEEEEEe
Q 019523 209 VAKEAIERARRGE-GPTLVECETY 231 (339)
Q Consensus 209 a~~~A~~~ar~~~-gP~lIev~t~ 231 (339)
.+.+|++.|+.++ ||+.|++...
T Consensus 150 ~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 150 VIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred HHHHHHHHhcCCCCCeEEEEecCc
Confidence 9999999998865 9999999543
No 179
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=92.76 E-value=0.78 Score=47.36 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=63.7
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeee-cccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i-~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..+++..|=|.++. ..++..|...+.|||+|+-.-.... +.. .......|...+++.+--...+|+ ++.++.+
T Consensus 74 gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-~~~~q~~d~~~~~~~~tk~s~~v~--~~~~~~~ 147 (569)
T PRK09259 74 GVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSEREIVDLQ-QGDYEELDQLNAAKPFCKAAFRVN--RAEDIGI 147 (569)
T ss_pred EEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEEccCCccccccc-CCCccccchhhhhhhheeeeEEcC--CHHHHHH
Confidence 35555568887763 5578899999999999986543211 110 111122355566666655666775 5678888
Q ss_pred HHHHHHHHHHcC-CCCEEEEEEE
Q 019523 209 VAKEAIERARRG-EGPTLVECET 230 (339)
Q Consensus 209 a~~~A~~~ar~~-~gP~lIev~t 230 (339)
.+.+|++.|..+ .||+.|++..
T Consensus 148 ~i~~A~~~A~~~~~GPV~l~iP~ 170 (569)
T PRK09259 148 GVARAIRTAVSGRPGGVYLDLPA 170 (569)
T ss_pred HHHHHHHHhhhCCCCcEEEEeCH
Confidence 999999999875 5899999953
No 180
>PRK07586 hypothetical protein; Validated
Probab=92.72 E-value=0.73 Score=46.87 Aligned_cols=95 Identities=19% Similarity=0.097 Sum_probs=63.2
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++. ...+..|-..+.|||+|.-.-.... .........|...+++.+--...+|. ++.++.+.
T Consensus 66 gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 138 (514)
T PRK07586 66 AATLLHLGPGLANG---LANLHNARRARTPIVNIVGDHATYH--RKYDAPLTSDIEALARPVSGWVRRSE--SAADVAAD 138 (514)
T ss_pred EEEEecccHHHHHH---HHHHHHHHhcCCCEEEEecCCchhc--cCCCcccccchhhhhccccceeeecC--CHHHHHHH
Confidence 34555668886652 5578889999999999976543111 00111112356667776655566664 45688888
Q ss_pred HHHHHHHHHcC-CCCEEEEEEEe
Q 019523 210 AKEAIERARRG-EGPTLVECETY 231 (339)
Q Consensus 210 ~~~A~~~ar~~-~gP~lIev~t~ 231 (339)
+++|++.|+.+ .||++|++...
T Consensus 139 i~~A~~~a~~~~~GPV~l~iP~D 161 (514)
T PRK07586 139 AAAAVAAARGAPGQVATLILPAD 161 (514)
T ss_pred HHHHHHHHhcCCCCcEEEEeccc
Confidence 99999999886 69999999554
No 181
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=92.68 E-value=0.78 Score=47.38 Aligned_cols=94 Identities=24% Similarity=0.296 Sum_probs=62.4
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCee-ecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~-i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..+++..|=|.++. .-++..|-.-+.|||+|.-.-... ++. ......|...+++.+--...+|. ++.++..
T Consensus 80 gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~ItG~~~~~~~~~---~~~q~~d~~~l~~~~tk~~~~v~--~~~~~~~ 151 (571)
T PRK07710 80 GVVIATSGPGATNV---VTGLADAMIDSLPLVVFTGQVATSVIGS---DAFQEADIMGITMPVTKHNYQVR--KASDLPR 151 (571)
T ss_pred eEEEECCCccHHHH---HHHHHHHhhcCCCEEEEeccCCccccCC---CCccccchhhhhhcccceEEecC--CHHHHHH
Confidence 35555567887662 567888999999999997654321 111 11112355566666555566664 4558888
Q ss_pred HHHHHHHHHHcCC-CCEEEEEEEe
Q 019523 209 VAKEAIERARRGE-GPTLVECETY 231 (339)
Q Consensus 209 a~~~A~~~ar~~~-gP~lIev~t~ 231 (339)
.+++|++.++.++ ||+.|++...
T Consensus 152 ~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 152 IIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred HHHHHHHHHhcCCCCcEEEEcChh
Confidence 8999999888764 9999999643
No 182
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=92.66 E-value=0.79 Score=47.79 Aligned_cols=95 Identities=23% Similarity=0.228 Sum_probs=63.5
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++. .-.|..|..-+.|||+|+-.-.... .........|...+++.+--...+|+ ++.++.+.
T Consensus 96 gv~~~t~GPG~~N~---l~gl~~A~~~~~PllvI~G~~~~~~--~~~~~~q~~d~~~l~~~~tk~s~~v~--~~~~i~~~ 168 (612)
T PRK07789 96 GVCMATSGPGATNL---VTPIADANMDSVPVVAITGQVGRGL--IGTDAFQEADIVGITMPITKHNFLVT--DADDIPRV 168 (612)
T ss_pred EEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccc--cCCCcCcccchhhhhhcceeEEEEcC--CHHHHHHH
Confidence 45566667877763 5678889999999999986443111 01111112355566666655566674 56688889
Q ss_pred HHHHHHHHHcC-CCCEEEEEEEe
Q 019523 210 AKEAIERARRG-EGPTLVECETY 231 (339)
Q Consensus 210 ~~~A~~~ar~~-~gP~lIev~t~ 231 (339)
+.+|++.++.+ .||++|++...
T Consensus 169 l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 169 IAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred HHHHHHHHhcCCCceEEEEEccc
Confidence 99999998876 48999999543
No 183
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=92.58 E-value=0.89 Score=47.03 Aligned_cols=95 Identities=17% Similarity=0.034 Sum_probs=63.2
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
.++++..|=|+++. .-.|..|-..+.|||+|+-.-...... .......|...+++.+--...+|+ ++.++.+.
T Consensus 76 gv~~~t~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~Q~~d~~~l~~~vtk~~~~v~--~~~~~~~~ 148 (578)
T PRK06112 76 AVVTAQNGPAATLL---VAPLAEALKASVPIVALVQDVNRDQTD--RNAFQELDHIALFQSCTKWVRRVT--VAERIDDY 148 (578)
T ss_pred EEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCC--CCCccccChhhhhccccceEEEeC--CHHHHHHH
Confidence 35555667777663 557888999999999998543211100 111112355667777766666775 45688888
Q ss_pred HHHHHHHHHcCC-CCEEEEEEEe
Q 019523 210 AKEAIERARRGE-GPTLVECETY 231 (339)
Q Consensus 210 ~~~A~~~ar~~~-gP~lIev~t~ 231 (339)
+++|++.|+.++ ||+.|++...
T Consensus 149 i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 149 VDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred HHHHHHHHhhCCCCcEEEEcCHh
Confidence 999999988864 8999999543
No 184
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=92.54 E-value=0.83 Score=47.37 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=62.2
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++. ..++..|-..+.|||+|+-.-.... .........|...+++.+--...+|+ ++.++...
T Consensus 65 gv~~~t~GPG~~n~---l~~i~~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~d~~~l~~~~tk~s~~v~--~~~~i~~~ 137 (586)
T PRK06276 65 GVCVATSGPGATNL---VTGIATAYADSSPVIALTGQVPTKL--IGNDAFQEIDALGIFMPITKHNFQIK--KPEEIPEI 137 (586)
T ss_pred EEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCCccc--cCCCCCccccHhhHHhhhcceEEecC--CHHHHHHH
Confidence 45555667777763 5688899999999999975332110 00111112355566666666666775 45588888
Q ss_pred HHHHHHHHHcCC-CCEEEEEEE
Q 019523 210 AKEAIERARRGE-GPTLVECET 230 (339)
Q Consensus 210 ~~~A~~~ar~~~-gP~lIev~t 230 (339)
+.+|++.|...+ ||+.|++..
T Consensus 138 i~~A~~~A~~~~~GPV~l~iP~ 159 (586)
T PRK06276 138 FRAAFEIAKTGRPGPVHIDLPK 159 (586)
T ss_pred HHHHHHHhcCCCCCcEEEEcCh
Confidence 999999988764 899999954
No 185
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=92.49 E-value=0.97 Score=46.50 Aligned_cols=94 Identities=24% Similarity=0.286 Sum_probs=64.3
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCe-eecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..+++..|=|.++- ..++..|-..+.|||+|+-.-.. ..+. ......|...+++.+-....+|+ ++.++..
T Consensus 66 gv~~~t~GpG~~n~---l~~i~~A~~~~~Pvl~i~g~~~~~~~~~---~~~q~~d~~~~~~~~tk~~~~v~--~~~~~~~ 137 (558)
T TIGR00118 66 GVVLVTSGPGATNL---VTGIATAYMDSIPMVVFTGQVPTSLIGS---DAFQEADILGITMPITKHSFQVK--SAEDIPR 137 (558)
T ss_pred EEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCCccccCC---CCCcccChhhhhcCccceeEEeC--CHHHHHH
Confidence 35666668887662 56788999999999999764321 1111 11112355567777777777885 4668888
Q ss_pred HHHHHHHHHHcCC-CCEEEEEEEe
Q 019523 209 VAKEAIERARRGE-GPTLVECETY 231 (339)
Q Consensus 209 a~~~A~~~ar~~~-gP~lIev~t~ 231 (339)
.+.+|++.+...+ ||+.|++...
T Consensus 138 ~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 138 IIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred HHHHHHHHHhcCCCCeEEEEcChh
Confidence 8999999888874 8999999543
No 186
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=92.34 E-value=1.2 Score=45.90 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=61.7
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++. .-++..|-..+.|||+|.-.-..... ........|...+++.+=-...+| .+++++.+.
T Consensus 73 gv~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~--~~~~~q~~d~~~l~~~~tk~~~~v--~~~~~~~~~ 145 (557)
T PRK08199 73 GICFVTRGPGATNA---SIGVHTAFQDSTPMILFVGQVARDFR--EREAFQEIDYRRMFGPMAKWVAEI--DDAARIPEL 145 (557)
T ss_pred EEEEeCCCccHHHH---HHHHHHHhhcCCCEEEEecCCccccC--CCCcccccCHHHhhhhhhceeeec--CCHHHHHHH
Confidence 35556668887762 55788999999999999754321110 011111234555565554445566 467788889
Q ss_pred HHHHHHHHHcC-CCCEEEEEEE
Q 019523 210 AKEAIERARRG-EGPTLVECET 230 (339)
Q Consensus 210 ~~~A~~~ar~~-~gP~lIev~t 230 (339)
+.+|++.|..+ .||+.|++..
T Consensus 146 ~~~A~~~A~~~~~GPV~l~iP~ 167 (557)
T PRK08199 146 VSRAFHVATSGRPGPVVLALPE 167 (557)
T ss_pred HHHHHHHHhcCCCCcEEEEcCH
Confidence 99999999887 4899999953
No 187
>PRK11269 glyoxylate carboligase; Provisional
Probab=92.32 E-value=0.79 Score=47.59 Aligned_cols=94 Identities=18% Similarity=0.134 Sum_probs=63.0
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHH
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 210 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~ 210 (339)
.+++..|=|.++. .-.+..|-.-+.|||+|.-+-....... ......|...+++.+--...+| .++.++...+
T Consensus 71 v~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~~~l~~~itk~s~~v--~~~~~~~~~i 143 (591)
T PRK11269 71 VCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIESIAKPVTKWAVTV--REPALVPRVF 143 (591)
T ss_pred EEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC--CcccccChhhHhhcceeEEEEc--CCHHHHHHHH
Confidence 4455567777762 5578889999999999986543221111 1111235556666665556666 4566888899
Q ss_pred HHHHHHHHcCC-CCEEEEEEEe
Q 019523 211 KEAIERARRGE-GPTLVECETY 231 (339)
Q Consensus 211 ~~A~~~ar~~~-gP~lIev~t~ 231 (339)
++|++.|+.++ ||+.|++...
T Consensus 144 ~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 144 QQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred HHHHHHHhhCCCCeEEEEeChh
Confidence 99999998864 8999999644
No 188
>PRK08266 hypothetical protein; Provisional
Probab=92.26 E-value=0.97 Score=46.32 Aligned_cols=95 Identities=17% Similarity=0.094 Sum_probs=62.7
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccccc-cChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~~-~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
.+++..|=|.++. .-++..|...+.|||+|+-.=. ..++... .+. ...|...+++.+--...+|+. +.++.+
T Consensus 71 v~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~-~~~~~~~d~~~~~~~~tk~~~~v~~--~~~~~~ 144 (542)
T PRK08266 71 VCSVVPGPGVLNA---GAALLTAYGCNSPVLCLTGQIPSALIGKGR-GHLHEMPDQLATLRSFTKWAERIEH--PSEAPA 144 (542)
T ss_pred EEEECCCCcHHHH---HHHHHHHHhhCCCEEEEecCCChhhccCCC-CcceecccHhhHHhhhcceEEEeCC--HHHHHH
Confidence 4555568887763 5678899999999999975422 1111100 011 113556667766666677754 458888
Q ss_pred HHHHHHHHHHcC-CCCEEEEEEEe
Q 019523 209 VAKEAIERARRG-EGPTLVECETY 231 (339)
Q Consensus 209 a~~~A~~~ar~~-~gP~lIev~t~ 231 (339)
.+++|++.|..+ .||++|++...
T Consensus 145 ~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 145 LVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred HHHHHHHHHhhCCCCcEEEEeCHh
Confidence 889999888874 58999999654
No 189
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=92.17 E-value=1 Score=46.59 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=63.9
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..+++..|=|.++. .-++..|-..+.|||+|.-.-. ..++.. .....|...+++.+--...+|+ ++.++.+
T Consensus 75 gv~~~t~GPG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~~~~~itk~s~~v~--~~~~~~~ 146 (566)
T PRK07282 75 GVAVVTSGPGATNA---ITGIADAMSDSVPLLVFTGQVARAGIGKD---AFQEADIVGITMPITKYNYQIR--ETADIPR 146 (566)
T ss_pred eEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecccccccCCCC---CccccChhchhcCCCceeEEcC--CHHHHHH
Confidence 45666668887763 5578888999999999986543 112111 1112345566666666666775 5668888
Q ss_pred HHHHHHHHHHcCC-CCEEEEEEEe
Q 019523 209 VAKEAIERARRGE-GPTLVECETY 231 (339)
Q Consensus 209 a~~~A~~~ar~~~-gP~lIev~t~ 231 (339)
.+.+|++.++.++ ||+.|++...
T Consensus 147 ~l~~A~~~A~~~~~GPV~l~iP~D 170 (566)
T PRK07282 147 IITEAVHIATTGRPGPVVIDLPKD 170 (566)
T ss_pred HHHHHHHHHhcCCCCeEEEeCChh
Confidence 8999999998864 9999999543
No 190
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.13 E-value=0.8 Score=47.65 Aligned_cols=95 Identities=22% Similarity=0.197 Sum_probs=63.2
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++. ...+..|-..+.|||+|.-.-...... .......|...+++.+--...+|+ ++.++.+.
T Consensus 76 gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vtk~~~~v~--~~~~i~~~ 148 (595)
T PRK09107 76 GVVLVTSGPGATNA---VTPLQDALMDSIPLVCITGQVPTHLIG--SDAFQECDTVGITRPCTKHNWLVK--DVNDLARV 148 (595)
T ss_pred EEEEECCCccHhHH---HHHHHHHhhcCCCEEEEEcCCChhhcC--CCCCcccchhhhhhhheEEEEEeC--CHHHHHHH
Confidence 45566668887763 457888999999999997654311110 111112355556665555555664 56688889
Q ss_pred HHHHHHHHHcCC-CCEEEEEEEe
Q 019523 210 AKEAIERARRGE-GPTLVECETY 231 (339)
Q Consensus 210 ~~~A~~~ar~~~-gP~lIev~t~ 231 (339)
+.+|++.++.++ ||+.|++...
T Consensus 149 l~~A~~~A~s~~~GPV~l~iP~D 171 (595)
T PRK09107 149 IHEAFHVATSGRPGPVVVDIPKD 171 (595)
T ss_pred HHHHHHHhcCCCCceEEEecCCC
Confidence 999999998874 8999998543
No 191
>PRK08322 acetolactate synthase; Reviewed
Probab=92.07 E-value=0.97 Score=46.35 Aligned_cols=95 Identities=17% Similarity=0.118 Sum_probs=62.4
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++. .-++..|-..+.|||+|+-+-..... ........|...+++.+--...+|. ++.++.+.
T Consensus 65 gv~~~t~GpG~~N~---~~~i~~A~~~~~Pll~i~g~~~~~~~--~~~~~q~~d~~~~~~~~tk~~~~v~--~~~~~~~~ 137 (547)
T PRK08322 65 GVCLSTLGPGATNL---VTGVAYAQLGGMPMVAITGQKPIKRS--KQGSFQIVDVVAMMAPLTKWTRQIV--SPDNIPEV 137 (547)
T ss_pred EEEEECCCccHhHH---HHHHHHHhhcCCCEEEEecccccccc--CCCccccccHHHHhhhheeEEEEeC--CHHHHHHH
Confidence 34555567777763 55788899999999999754321110 1111122355566666554556664 56688889
Q ss_pred HHHHHHHHHcC-CCCEEEEEEEe
Q 019523 210 AKEAIERARRG-EGPTLVECETY 231 (339)
Q Consensus 210 ~~~A~~~ar~~-~gP~lIev~t~ 231 (339)
+.+|++.|... .||++|++...
T Consensus 138 i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 138 VREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HHHHHHHHccCCCCcEEEEcChh
Confidence 99999999886 48999999543
No 192
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=91.92 E-value=1.1 Score=46.31 Aligned_cols=93 Identities=13% Similarity=0.056 Sum_probs=59.0
Q ss_pred cEEEEE--eCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCee-ecccccccccChhhhhhcccCCCcEEEecCCCHHHH
Q 019523 130 HVTLAF--FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 206 (339)
Q Consensus 130 ~~vv~~--~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~-i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v 206 (339)
+..+|+ .|=|.++. .-++..|..-+.|||+|.-+-... .+.. ..| ..|...+++.+-....+|+ ++.++
T Consensus 66 ~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~-~~Q--~~d~~~l~~~itk~~~~v~--~~~~~ 137 (574)
T PRK09124 66 ELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGSG-YFQ--ETHPQELFRECSHYCELVS--NPEQL 137 (574)
T ss_pred CcEEEEECCCCCHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCC-Ccc--ccChhhhcccceeeeEEeC--CHHHH
Confidence 345555 46666652 346888899999999997653311 1111 111 2344555665544455564 45577
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEE
Q 019523 207 REVAKEAIERARRGEGPTLVECET 230 (339)
Q Consensus 207 ~~a~~~A~~~ar~~~gP~lIev~t 230 (339)
.+.+++|++.|...+||+.|++..
T Consensus 138 ~~~i~~A~~~A~~~~gPV~l~iP~ 161 (574)
T PRK09124 138 PRVLAIAMRKAILNRGVAVVVLPG 161 (574)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCh
Confidence 778888999888888999999843
No 193
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.86 E-value=1.2 Score=46.12 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=62.9
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++. .-++..|-..+.|||+|.-.-....- ........|...+++.+--...+|. ++.++...
T Consensus 69 gv~~~t~GpG~~N~---l~~i~~A~~~~~Pvlvi~G~~~~~~~--~~~~~q~~d~~~l~~~vtk~s~~v~--~~~~~~~~ 141 (574)
T PRK06882 69 GCVLVTSGPGATNA---ITGIATAYTDSVPLVILSGQVPSNLI--GTDAFQECDMLGISRPVVKHSFIVK--NAEDIPST 141 (574)
T ss_pred eEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCcccc--CCCcccccchhhhhhcccceEEEeC--CHHHHHHH
Confidence 34555568887763 55788999999999999754431110 0111112355566666655666775 55688888
Q ss_pred HHHHHHHHHcC-CCCEEEEEEEe
Q 019523 210 AKEAIERARRG-EGPTLVECETY 231 (339)
Q Consensus 210 ~~~A~~~ar~~-~gP~lIev~t~ 231 (339)
+.+|++.|+.. .||+.|++...
T Consensus 142 l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 142 IKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred HHHHHHHHhcCCCCCEEEecCHH
Confidence 99999888775 59999999543
No 194
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=91.84 E-value=1.2 Score=46.11 Aligned_cols=94 Identities=17% Similarity=0.096 Sum_probs=61.7
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCe-eecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..+++..|=|.++- ..++..|-..+.|||+|.-.-.. ..+.. .....|...+++.+--...+|. ++..+.+
T Consensus 65 gv~~~t~GPG~~n~---~~~i~~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~id~~~~~~~vtk~~~~v~--~~~~~~~ 136 (575)
T TIGR02720 65 GVCFGSAGPGATHL---LNGLYDAKEDHVPVLALVGQVPTTGMNMD---TFQEMNENPIYADVAVYNRTAM--TAESLPH 136 (575)
T ss_pred eEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCC---CcceechhhhhhhcceEEEEeC--CHHHHHH
Confidence 45566668877762 55788999999999999865431 11111 1111233445555544445664 4557778
Q ss_pred HHHHHHHHHHcCCCCEEEEEEEe
Q 019523 209 VAKEAIERARRGEGPTLVECETY 231 (339)
Q Consensus 209 a~~~A~~~ar~~~gP~lIev~t~ 231 (339)
.+.+|++.|...+||+.|++..+
T Consensus 137 ~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 137 VIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred HHHHHHHHHhhCCCCEEEEECcc
Confidence 88899998888889999999644
No 195
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=91.84 E-value=1.5 Score=37.29 Aligned_cols=99 Identities=18% Similarity=0.216 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHH-HHHhCCCCEEEEEEcCCeeec--ccccccccCh
Q 019523 106 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLN-MAALWKLPIVFVVENNLWAIG--MSHLRATSDP 182 (339)
Q Consensus 106 ~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~-~A~~~~Lpvi~vv~NN~~~i~--~~~~~~~~~~ 182 (339)
++.|.|+|+. + .+++++.. ..|..- .++.|. .++.+++|+++++...++..+ .+++. +..
T Consensus 52 vg~A~GlA~~-----------G-~~pi~~~~--~~f~~r-a~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~--~~~ 114 (156)
T cd07033 52 VGIAAGLALH-----------G-LKPFVSTF--SFFLQR-AYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQ--GIE 114 (156)
T ss_pred HHHHHHHHHC-----------C-CeEEEEEC--HHHHHH-HHHHHHHHHhccCCCeEEEEECCcEecCCCCcccc--hHH
Confidence 4567777764 3 34445544 444432 256665 899999999999887665442 22211 122
Q ss_pred hhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 019523 183 QIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 183 d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIev 228 (339)
+++ +.+ .+|+++| .-.|+.++...++.| .+.++|++|-+
T Consensus 115 ~~a-~~~--~iPg~~v~~Ps~~~~~~~ll~~a----~~~~~P~~irl 154 (156)
T cd07033 115 DIA-LLR--AIPNMTVLRPADANETAAALEAA----LEYDGPVYIRL 154 (156)
T ss_pred HHH-Hhc--CCCCCEEEecCCHHHHHHHHHHH----HhCCCCEEEEe
Confidence 332 222 4566644 456767766655444 45567998854
No 196
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=91.75 E-value=1.2 Score=45.84 Aligned_cols=94 Identities=22% Similarity=0.249 Sum_probs=61.6
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++. ..+|..|-..+.|||+|.-.-.... .........|...+++.+--...+|. ++.++.+.
T Consensus 72 ~v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~~~~~itk~s~~v~--~~~~i~~~ 144 (561)
T PRK06048 72 GVCVATSGPGATNL---VTGIATAYMDSVPIVALTGQVPRSM--IGNDAFQEADITGITMPITKHNYLVQ--DAKDLPRI 144 (561)
T ss_pred eEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEeccCCccc--cCCCCccccchhhhccCcceEEEEeC--CHHHHHHH
Confidence 45556667887763 5678899999999998874322110 01111112355566666554556674 45688888
Q ss_pred HHHHHHHHHcC-CCCEEEEEEE
Q 019523 210 AKEAIERARRG-EGPTLVECET 230 (339)
Q Consensus 210 ~~~A~~~ar~~-~gP~lIev~t 230 (339)
+.+|++.++.+ .||+.|++..
T Consensus 145 i~~A~~~A~~~~~GPV~l~iP~ 166 (561)
T PRK06048 145 IKEAFHIASTGRPGPVLIDLPK 166 (561)
T ss_pred HHHHHHHHhcCCCCeEEEecCh
Confidence 99999988876 5899999954
No 197
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=91.57 E-value=1 Score=46.22 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=61.9
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCee-ecccc--cccccCh-hhhhhcccCCCcEEEecCCCHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSH--LRATSDP-QIYKKGPAFGMPGFHVDGMDVLK 205 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~-i~~~~--~~~~~~~-d~~~~a~a~G~~~~~Vdg~d~~~ 205 (339)
.++++..|=|.++. ..++..|...+.|||+|.-+.... ++... ..|.... +...+++..--...+|. ++..
T Consensus 65 gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~--~~~~ 139 (535)
T TIGR03394 65 GVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLD--DPAT 139 (535)
T ss_pred eEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeC--ChHH
Confidence 45666668888773 457889999999999998653311 11110 0111112 34455665544455664 4457
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEEEe
Q 019523 206 VREVAKEAIERARRGEGPTLVECETY 231 (339)
Q Consensus 206 v~~a~~~A~~~ar~~~gP~lIev~t~ 231 (339)
+.+.+++|++.+....||++|++...
T Consensus 140 ~~~~~~~A~~~a~~~~gPv~i~iP~D 165 (535)
T TIGR03394 140 APAEIARVLGSARELSRPVYLEIPRD 165 (535)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEechh
Confidence 77788889988888889999999654
No 198
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.57 E-value=1.1 Score=46.19 Aligned_cols=95 Identities=20% Similarity=0.228 Sum_probs=62.5
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++. .-.+..|-..+.|||+|.-.-.... .........|...+++.+--...+|+ ++.++...
T Consensus 69 gv~~~t~GpG~~n~---l~gia~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~~~~~itk~~~~v~--~~~~~~~~ 141 (572)
T PRK08979 69 GVVLVTSGPGATNT---ITGIATAYMDSIPMVVLSGQVPSNL--IGNDAFQECDMIGISRPVVKHSFLVK--DAEDIPEI 141 (572)
T ss_pred eEEEECCCchHhHH---HHHHHHHhhcCCCEEEEecCCCccc--cCCCCCcccchhHHhhhceeEEEecC--CHHHHHHH
Confidence 34555568887763 5578889999999999875432111 00111122355566666555566775 56688888
Q ss_pred HHHHHHHHHcCC-CCEEEEEEEe
Q 019523 210 AKEAIERARRGE-GPTLVECETY 231 (339)
Q Consensus 210 ~~~A~~~ar~~~-gP~lIev~t~ 231 (339)
+++|++.|+.++ ||++|++...
T Consensus 142 l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 142 IKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred HHHHHHHHhCCCCCcEEEecCHh
Confidence 999999998865 8999998543
No 199
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=91.42 E-value=0.97 Score=47.02 Aligned_cols=94 Identities=20% Similarity=0.110 Sum_probs=61.1
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCe-eecccccccccChhhhhhcccCC-CcEEEecCCCHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFG-MPGFHVDGMDVLKVR 207 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~G-~~~~~Vdg~d~~~v~ 207 (339)
..+++..|=|.++. .-.+..|-.-+.|||+|+-.=.. .++. ......|...+++.+- -...+|+ ++.++.
T Consensus 69 gv~~~t~GPG~~n~---~~gi~~A~~d~vPvl~I~G~~~~~~~~~---~~~q~~d~~~l~~~vt~k~~~~v~--~~~~~~ 140 (597)
T PRK08273 69 GVCLATSGPGAIHL---LNGLYDAKLDHVPVVAIVGQQARAALGG---HYQQEVDLQSLFKDVAGAFVQMVT--VPEQLR 140 (597)
T ss_pred EEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCchhhcCC---CCCCccCHHHHHHHHHHHHeeEeC--CHHHHH
Confidence 34555668887763 45788899999999999743211 1111 1111234445555544 3455665 455888
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEEe
Q 019523 208 EVAKEAIERARRGEGPTLVECETY 231 (339)
Q Consensus 208 ~a~~~A~~~ar~~~gP~lIev~t~ 231 (339)
+.+.+|++.|...+||++|++...
T Consensus 141 ~~l~~A~~~A~~~~gPV~i~iP~D 164 (597)
T PRK08273 141 HLVDRAVRTALAERTVTAVILPND 164 (597)
T ss_pred HHHHHHHHHHhhCCCCEEEEeCcc
Confidence 889999999988889999999654
No 200
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.25 E-value=1.7 Score=45.16 Aligned_cols=94 Identities=27% Similarity=0.286 Sum_probs=62.1
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCe-eecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..+++..|=|.++. ..++..|...+.|||+|.-.=.. .++ .......|...+++.+--...+|. ++.++.+
T Consensus 86 gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~---~~~~q~~d~~~l~~~itk~~~~v~--~~~~~~~ 157 (587)
T PRK06965 86 GVALVTSGPGVTNA---VTGIATAYMDSIPMVVISGQVPTAAIG---QDAFQECDTVGITRPIVKHNFLVK--DVRDLAE 157 (587)
T ss_pred eEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccC---CCCcccccHHHHhcCCcceeEEeC--CHHHHHH
Confidence 34555567777662 56788899999999998643211 111 111122355566666666666775 5568888
Q ss_pred HHHHHHHHHHcC-CCCEEEEEEEe
Q 019523 209 VAKEAIERARRG-EGPTLVECETY 231 (339)
Q Consensus 209 a~~~A~~~ar~~-~gP~lIev~t~ 231 (339)
.+.+|++.|+.+ .||+.|++...
T Consensus 158 ~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 158 TVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred HHHHHHHHHhcCCCCeEEEEeChh
Confidence 899999999887 49999999443
No 201
>PRK12474 hypothetical protein; Provisional
Probab=91.16 E-value=1.4 Score=45.01 Aligned_cols=94 Identities=18% Similarity=0.112 Sum_probs=62.0
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCee-ecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~-i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..+++..|=|.++- .-.+..|-.-+.|||+|+-..... .+.. ..| ..|...+++.+--...+| .++.++.+
T Consensus 70 gv~~~t~GpG~~N~---~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~-~~q--~~d~~~~~~~vtk~~~~v--~~~~~~~~ 141 (518)
T PRK12474 70 AVTLLHLGPGLANG---LANLHNARRAASPIVNIVGDHAVEHLQYD-APL--TSDIDGFARPVSRWVHRS--ASAGAVDS 141 (518)
T ss_pred EEEEEccchhHhHh---HHHHHHHhhcCCCEEEEeccCchhhcCCC-Ccc--ccCHHHhhhcccceeeec--CCHHHHHH
Confidence 45566668887652 457888999999999998653311 1110 011 135556666655445555 45668888
Q ss_pred HHHHHHHHHHcCC-CCEEEEEEEe
Q 019523 209 VAKEAIERARRGE-GPTLVECETY 231 (339)
Q Consensus 209 a~~~A~~~ar~~~-gP~lIev~t~ 231 (339)
.+++|++.+..++ ||++|++...
T Consensus 142 ~i~rA~~~A~~~~~GPV~l~iP~D 165 (518)
T PRK12474 142 DVARAVQAAQSAPGGIATLIMPAD 165 (518)
T ss_pred HHHHHHHHHhcCCCCcEEEEechh
Confidence 8999999888865 8999999544
No 202
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.01 E-value=1.5 Score=45.21 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=61.7
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++. ...+..|-..+.|||+|.-.=.... .........|...+++.+--...+| .+++++.++
T Consensus 68 gv~~~t~GpG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~~~~~~tk~s~~v--~~~~~i~~~ 140 (563)
T PRK08527 68 GVAIVTSGPGFTNA---VTGLATAYMDSIPLVLISGQVPNSL--IGTDAFQEIDAVGISRPCVKHNYLV--KSIEELPRI 140 (563)
T ss_pred EEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccc--cCCCCCcccchhhhhhcccceEEEc--CCHHHHHHH
Confidence 45566668887763 5578889999999998864321110 0001111234445566555455566 466799999
Q ss_pred HHHHHHHHHcCC-CCEEEEEEEe
Q 019523 210 AKEAIERARRGE-GPTLVECETY 231 (339)
Q Consensus 210 ~~~A~~~ar~~~-gP~lIev~t~ 231 (339)
+++|++.++.++ ||+.|++...
T Consensus 141 l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 141 LKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred HHHHHHHHhcCCCCcEEEEcCHh
Confidence 999999998765 8999999543
No 203
>PRK08617 acetolactate synthase; Reviewed
Probab=90.90 E-value=1.4 Score=45.30 Aligned_cols=94 Identities=19% Similarity=0.052 Sum_probs=62.3
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCe-eecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..+++..|=|.++- .-.+..|..-+.|||+|.-.... .++.. .....|...+++.+--...+|+ +++++..
T Consensus 69 gv~~vt~GpG~~N~---l~gl~~A~~~~~PvlvisG~~~~~~~~~~---~~q~~d~~~l~~~~tk~~~~v~--~~~~~~~ 140 (552)
T PRK08617 69 GVVLVTSGPGVSNL---ATGLVTATAEGDPVVAIGGQVKRADRLKR---THQSMDNVALFRPITKYSAEVQ--DPDNLSE 140 (552)
T ss_pred EEEEECCCCcHhHh---HHHHHHHhhcCCCEEEEecCCcccccCCC---CccccchhhhhhhhcceEEEeC--CHHHHHH
Confidence 34555558887762 55788899999999998753321 11111 1112345566666655666775 5568888
Q ss_pred HHHHHHHHHHcC-CCCEEEEEEEe
Q 019523 209 VAKEAIERARRG-EGPTLVECETY 231 (339)
Q Consensus 209 a~~~A~~~ar~~-~gP~lIev~t~ 231 (339)
.+.+|++.+... .||+.|++...
T Consensus 141 ~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 141 VLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred HHHHHHHHHccCCCCcEEEeChhh
Confidence 899999988876 48999999543
No 204
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=90.79 E-value=1.7 Score=42.39 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=71.1
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhh
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 184 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~ 184 (339)
++.+++|++++ .-+..-...|.|-..| +|.|.+|+-..+|+++++.+... -++.........|+
T Consensus 59 a~s~v~GA~~a------------Gar~~TaTSg~Gl~Lm---~E~l~~a~~~~~P~Vi~~~~R~~-ps~g~p~~~dq~D~ 122 (365)
T COG0674 59 AISAVIGASYA------------GARAFTATSGQGLLLM---AEALGLAAGTETPLVIVVAQRPL-PSTGLPIKGDQSDL 122 (365)
T ss_pred HHHHHHHHHhh------------CcceEeecCCccHHHH---HHHHHHHHhccCCeEEEEeccCc-CCCcccccccHHHH
Confidence 56788999987 2344556677776556 78999999999999988888752 22211111122333
Q ss_pred hhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 019523 185 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 231 (339)
Q Consensus 185 ~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~ 231 (339)
...-.+ ||+-+... ++.+.+...-.|.+.|.+..-|+++-..-+
T Consensus 123 ~~~r~~-g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~ 166 (365)
T COG0674 123 MAARDT-GFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGF 166 (365)
T ss_pred HHHHcc-CceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccc
Confidence 221112 77777665 667777777788888888888988765433
No 205
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=90.73 E-value=1.7 Score=43.10 Aligned_cols=108 Identities=17% Similarity=0.118 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhh
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 184 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~ 184 (339)
++.+++|++++ +.++.+.+-=.+++-- +|.|.+|+-..+|+|+++.+-+.. .+.......+|+
T Consensus 68 A~~~~~GAs~a-------------GaRa~TaTS~~Gl~lm--~E~l~~aa~~~~P~V~~~~~R~~~--~~~~i~~d~~D~ 130 (407)
T PRK09622 68 AMSACVGAAAA-------------GGRVATATSSQGLALM--VEVLYQASGMRLPIVLNLVNRALA--APLNVNGDHSDM 130 (407)
T ss_pred HHHHHHHHHhh-------------CcCEEeecCcchHHHH--hhHHHHHHHhhCCEEEEEeccccC--CCcCCCchHHHH
Confidence 56788999988 4445555544445532 789999999999988888877622 121112222343
Q ss_pred hhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcC--CCCEEEEEEEee
Q 019523 185 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG--EGPTLVECETYR 232 (339)
Q Consensus 185 ~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~--~gP~lIev~t~r 232 (339)
.. ++.-| .+.....++.++++....|++.+.+. .-|+++-...++
T Consensus 131 ~~-~r~~g--~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~ 177 (407)
T PRK09622 131 YL-SRDSG--WISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFL 177 (407)
T ss_pred HH-HhcCC--eEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhh
Confidence 32 23334 44556788889999999999988766 789988776543
No 206
>PRK05858 hypothetical protein; Provisional
Probab=90.63 E-value=1.7 Score=44.67 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=60.3
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCee-ecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~-i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
.+++..|=|.++. ..++..|..-+.|||+|.-+-... ++.. ..| ..|...+++.+--...+|+. +..+.+.
T Consensus 70 v~~~t~GpG~~n~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~l~~~~tk~~~~v~~--~~~~~~~ 141 (542)
T PRK05858 70 VAVLTAGPGVTNG---MSAMAAAQFNQSPLVVLGGRAPALRWGMG-SLQ--EIDHVPFVAPVTKFAATAQS--AENAGRL 141 (542)
T ss_pred EEEEcCCchHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCCC-CCc--ccchhhhhhhhhceEEEeCC--HHHHHHH
Confidence 4444446666652 568889999999999887543211 1111 112 23455566666656667754 5688888
Q ss_pred HHHHHHHHHcC-CCCEEEEEEE
Q 019523 210 AKEAIERARRG-EGPTLVECET 230 (339)
Q Consensus 210 ~~~A~~~ar~~-~gP~lIev~t 230 (339)
+.+|++.+... .||+.|++..
T Consensus 142 i~~A~~~A~~~~~GPV~l~iP~ 163 (542)
T PRK05858 142 VDQALQAAVTPHRGPVFVDFPM 163 (542)
T ss_pred HHHHHHHHcCCCCCeEEEEcCh
Confidence 99999888775 5899999854
No 207
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=90.62 E-value=1.8 Score=44.41 Aligned_cols=94 Identities=20% Similarity=0.082 Sum_probs=61.2
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCee-ecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~-i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..+++..|=|.++- .-.+..|...+.|||+|+-.-... +.. ......|...+++.+--...+++ ++.++.+
T Consensus 63 gv~~~t~GpG~~n~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~~~~~~tk~~~~i~--~~~~~~~ 134 (539)
T TIGR02418 63 GVALVTSGPGCSNL---VTGLATANSEGDPVVAIGGQVKRADLLK---LTHQSMDNVALFRPITKYSAEVQ--DPDALSE 134 (539)
T ss_pred eEEEECCCCCHhHH---HHHHHHHhhcCCCEEEEeCCCccccccc---CcccccchhhhhhcceeeeeecC--CHHHHHH
Confidence 45556667777662 557888999999999998643211 111 11112344555665544455564 5668888
Q ss_pred HHHHHHHHHHcC-CCCEEEEEEEe
Q 019523 209 VAKEAIERARRG-EGPTLVECETY 231 (339)
Q Consensus 209 a~~~A~~~ar~~-~gP~lIev~t~ 231 (339)
.+.+|++.+... .||+.|++...
T Consensus 135 ~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 135 VVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred HHHHHHHHHhcCCCCCEEEEcChh
Confidence 899999988876 48999999544
No 208
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=90.53 E-value=2.2 Score=43.56 Aligned_cols=96 Identities=15% Similarity=-0.009 Sum_probs=60.8
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
..+++..|=|.++ ..-++..|...+.|||+|+-.-.+........+ ...|...+++.+--...+| .++.++.+.
T Consensus 75 ~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~tk~~~~v--~~~~~~~~~ 148 (530)
T PRK07092 75 AFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYVKWSIEP--ARAEDVPAA 148 (530)
T ss_pred eEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhcccccceeec--CCHHHHHHH
Confidence 3445556777664 266889999999999988754332111000001 1124445566554445566 456788888
Q ss_pred HHHHHHHHHcCC-CCEEEEEEEe
Q 019523 210 AKEAIERARRGE-GPTLVECETY 231 (339)
Q Consensus 210 ~~~A~~~ar~~~-gP~lIev~t~ 231 (339)
+.+|++.++..+ ||++|++...
T Consensus 149 i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 149 IARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred HHHHHHHHhcCCCCcEEEEccHH
Confidence 999999998875 7999999543
No 209
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=90.36 E-value=1.8 Score=44.92 Aligned_cols=94 Identities=21% Similarity=0.280 Sum_probs=61.5
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC-eeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..+++..|=|.++. ...|..|-.-+.|||+|.-.-. +.++.. .....|...+++.+--...+|. ++.++.+
T Consensus 78 gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~~d~~~~~~~~tk~~~~v~--~~~~i~~ 149 (585)
T CHL00099 78 GVCFATSGPGATNL---VTGIATAQMDSVPLLVITGQVGRAFIGTD---AFQEVDIFGITLPIVKHSYVVR--DARDISR 149 (585)
T ss_pred EEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC---CccccchhhhhcCceeEEEEeC--CHHHHHH
Confidence 34555567877763 5578889999999999975432 111111 1112344455565555566775 5668888
Q ss_pred HHHHHHHHHHcC-CCCEEEEEEEe
Q 019523 209 VAKEAIERARRG-EGPTLVECETY 231 (339)
Q Consensus 209 a~~~A~~~ar~~-~gP~lIev~t~ 231 (339)
.+++|++.++.+ .||+.|++...
T Consensus 150 ~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 150 IVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred HHHHHHHHHccCCCCeEEEecChh
Confidence 899999988875 48999998543
No 210
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=89.76 E-value=2.4 Score=43.91 Aligned_cols=92 Identities=18% Similarity=0.093 Sum_probs=58.1
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCee-ecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHH
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 209 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~-i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a 209 (339)
.+++..|=|.++. .-.+..|-..+.|||+|.-+-... ++.. ..| ..|...+++.+--...+|. ++.++...
T Consensus 69 v~~v~~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-~~Q--e~d~~~l~~~~tk~~~~v~--~~~~~~~~ 140 (578)
T PRK06546 69 VCAGSCGPGNLHL---INGLYDAHRSGAPVLAIASHIPSAQIGSG-FFQ--ETHPDRLFVECSGYCEMVS--SAEQAPRV 140 (578)
T ss_pred EEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCCC-Ccc--ccChhhhcccceeeEeEeC--CHHHHHHH
Confidence 3344457777662 446888999999999997532211 1110 111 1233455555444455664 45578888
Q ss_pred HHHHHHHHHcCCCCEEEEEEE
Q 019523 210 AKEAIERARRGEGPTLVECET 230 (339)
Q Consensus 210 ~~~A~~~ar~~~gP~lIev~t 230 (339)
+.+|++.|....||+.|++..
T Consensus 141 i~~A~~~A~~~~GPV~l~lP~ 161 (578)
T PRK06546 141 LHSAIQHAVAGGGVSVVTLPG 161 (578)
T ss_pred HHHHHHHHhcCCCCEEEEcCh
Confidence 999999998888999999854
No 211
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=89.67 E-value=1.4 Score=45.54 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=62.0
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeee-cccc---c--ccccC-hhhhhhcccCCCcEEEecCCC
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSH---L--RATSD-PQIYKKGPAFGMPGFHVDGMD 202 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i-~~~~---~--~~~~~-~d~~~~a~a~G~~~~~Vdg~d 202 (339)
..+++..|=|.++. ...|..|...+.|||+|+-+-.... +... . ..... .|...+++.+--...+|+ +
T Consensus 77 gv~~~t~GPG~~N~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~--~ 151 (569)
T PRK08327 77 QAVMVHVDVGTANA---LGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIR--R 151 (569)
T ss_pred eEEEEecCHHHHHH---HHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccC--C
Confidence 45555668877762 5678899999999999987543211 1000 0 00111 355566665554555665 4
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCEEEEEE
Q 019523 203 VLKVREVAKEAIERARRG-EGPTLVECE 229 (339)
Q Consensus 203 ~~~v~~a~~~A~~~ar~~-~gP~lIev~ 229 (339)
++++..++.+|++.++.+ .||++|++.
T Consensus 152 ~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 152 GDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 558888999999999875 699999995
No 212
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=89.61 E-value=1.5 Score=43.74 Aligned_cols=96 Identities=10% Similarity=0.079 Sum_probs=58.5
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCee-ecccccccccChhhhhhcccCCCcEEEecCCC----HH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMD----VL 204 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~-i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d----~~ 204 (339)
..+++..|=|.++. .-++..|-.-+.|||+|.-.-... .+.. ..| ..|...+++.+--...+|...+ ..
T Consensus 65 gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~~~~~~tk~~~~v~~~~~~~~~~ 138 (432)
T TIGR00173 65 VAVVCTSGTAVANL---LPAVIEASYSGVPLIVLTADRPPELRGCG-ANQ--TIDQPGLFGSYVRWSLDLPLPEADEPLA 138 (432)
T ss_pred EEEEECCcchHhhh---hHHHHHhcccCCcEEEEeCCCCHHHhCCC-CCc--ccchhhHHhhccceeeeCCCCCccccHH
Confidence 45556667777763 457888999999999997543211 1110 011 1244455555554555664333 11
Q ss_pred HHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 019523 205 KVREVAKEAIERARRGE-GPTLVECETY 231 (339)
Q Consensus 205 ~v~~a~~~A~~~ar~~~-gP~lIev~t~ 231 (339)
.+.+.+++|++.+..++ ||+.|++..+
T Consensus 139 ~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (432)
T TIGR00173 139 YLRSTVDRAVAQAQGPPPGPVHINVPFR 166 (432)
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEeCCCC
Confidence 26667888888887744 8999999643
No 213
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=89.10 E-value=2 Score=37.20 Aligned_cols=99 Identities=21% Similarity=0.158 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHH-HHHHhC--------CCCEEEEEEcCCeeecccc
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECL-NMAALW--------KLPIVFVVENNLWAIGMSH 175 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal-~~A~~~--------~Lpvi~vv~NN~~~i~~~~ 175 (339)
.++.|.|+|+. +.++++.+.=+.|..-. ++-+ +.++.+ ++||+++...-++..+.++
T Consensus 56 ~vg~AaGlA~~-------------G~~pi~~~~~a~Fl~ra-~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~t 121 (167)
T cd07036 56 IVGLAVGAAMN-------------GLRPIVEIMFADFALPA-FDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQ 121 (167)
T ss_pred HHHHHHHHHHc-------------CCEEEEEeehHHHHHHH-HHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChh
Confidence 35566666664 34555543334444322 4443 334433 6999999865554332332
Q ss_pred cccccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEE
Q 019523 176 LRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVE 227 (339)
Q Consensus 176 ~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIe 227 (339)
+ +..+. .+.+ .+|+++| .-.|+.+....+ +.+...++|+++-
T Consensus 122 h---s~~~~-a~lr--~iPg~~V~~Psd~~e~~~~l----~~~~~~~~P~~~~ 164 (167)
T cd07036 122 H---SQSLE-AWFA--HIPGLKVVAPSTPYDAKGLL----KAAIRDDDPVIFL 164 (167)
T ss_pred h---hhhHH-HHHh--cCCCCEEEeeCCHHHHHHHH----HHHHhCCCcEEEE
Confidence 2 22333 3334 3455544 455766666544 4444567898873
No 214
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=88.78 E-value=3.7 Score=40.53 Aligned_cols=112 Identities=17% Similarity=0.106 Sum_probs=71.1
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhh
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 184 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~ 184 (339)
++.+++|++++ +.++.+.+-=.+++-- +|.|.+|+-..+|+++++-|-. ++.+........|+
T Consensus 62 A~~~~~GAs~a-------------GaRa~TaTS~~Gl~lm--~E~l~~aag~~lP~V~vv~~R~--~~~p~~i~~d~~D~ 124 (394)
T PRK08367 62 AISACVGASAA-------------GVRTFTATASQGLALM--HEVLFIAAGMRLPIVMAIGNRA--LSAPINIWNDWQDT 124 (394)
T ss_pred HHHHHHHHHhh-------------CCCeEeeeccchHHHH--hhHHHHHHHccCCEEEEECCCC--CCCCCCcCcchHHH
Confidence 56788999988 4445554444444432 7899999999999888875553 33332211111232
Q ss_pred hhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHc--CCCCEEEEEEEeeCCCCC
Q 019523 185 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR--GEGPTLVECETYRFRGHS 237 (339)
Q Consensus 185 ~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~--~~gP~lIev~t~r~~gh~ 237 (339)
. -.+..||-. +-..|+.++++-...|++.+.+ ..-|+++-...++. +|.
T Consensus 125 ~-~~rd~g~~~--~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~ 175 (394)
T PRK08367 125 I-SQRDTGWMQ--FYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THT 175 (394)
T ss_pred H-hccccCeEE--EeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCc
Confidence 2 223445443 3447888988888889988874 34799998877663 453
No 215
>PLN02573 pyruvate decarboxylase
Probab=87.82 E-value=2.3 Score=44.05 Aligned_cols=98 Identities=13% Similarity=0.102 Sum_probs=61.4
Q ss_pred CcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCee-ecccc--cccc---cChhhhhhcccCCCcEEEecCCC
Q 019523 129 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSH--LRAT---SDPQIYKKGPAFGMPGFHVDGMD 202 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~-i~~~~--~~~~---~~~d~~~~a~a~G~~~~~Vdg~d 202 (339)
-..+++..|=|.++- .-.+..|-..+.|||+|.-.-... ++... +... ...+...+++.+--...+|. +
T Consensus 79 ~gv~~~t~GpG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~--~ 153 (578)
T PLN02573 79 VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVIN--N 153 (578)
T ss_pred CCeEEEecCccHHHH---HHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeC--C
Confidence 345667778887762 457888889999999998643321 11100 0000 00122244555544556664 4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 019523 203 VLKVREVAKEAIERARRGEGPTLVECETY 231 (339)
Q Consensus 203 ~~~v~~a~~~A~~~ar~~~gP~lIev~t~ 231 (339)
+..+.+.+++|++.|+..+||++|++...
T Consensus 154 ~~~~~~~l~~A~~~A~~~~gPV~l~iP~D 182 (578)
T PLN02573 154 LEDAHELIDTAISTALKESKPVYISVSCN 182 (578)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeehh
Confidence 55788889999999998889999999544
No 216
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=87.31 E-value=4.4 Score=42.23 Aligned_cols=161 Identities=20% Similarity=0.198 Sum_probs=89.6
Q ss_pred CCChHHHHHHHHHccCCCCeeeeCCCCcccccccCCCHHHHHHHhhCCCCCCCcCCCCccccccCCCcccccccccccch
Q 019523 27 YNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGI 106 (339)
Q Consensus 27 ~~G~Ea~~~~~~~~l~~~D~i~~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~g~~G~~h~~~~~~~~~~~~g~lG~~~ 106 (339)
-.|.||++-|+. ..+=-++..|. +-+--+++..|....+ ++|-...|.. .-. .++
T Consensus 5 ~~GneA~A~g~~---~ag~~~~~~YP--------iTP~t~i~e~l~~~~~-----~~~~~~~~~~-----~E~----~a~ 59 (595)
T TIGR03336 5 LLGNEAIARGAL---EAGVGVAAAYP--------GTPSSEITDTLAKVAK-----RAGVYFEWSV-----NEK----VAV 59 (595)
T ss_pred ecHHHHHHHHHH---HcCCEEEEecC--------CCCHHHHHHHHHHhhh-----hccEEEEECc-----CHH----HHH
Confidence 379999876553 34533556666 2334455555554332 1111111111 111 145
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcc-cchHHHHHHHHH--hCCCCEEEEEEcCCeeecccccccccChh
Q 019523 107 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAA--LWKLPIVFVVENNLWAIGMSHLRATSDPQ 183 (339)
Q Consensus 107 p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~-~g~~~eal~~A~--~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d 183 (339)
.+|+|+++| +.++++.+-=.+++ + .|.|..++ ...+|+|+++-|.. +-+.....| .|
T Consensus 60 ~~~~GAs~a-------------G~ra~t~ts~~Gl~~~---~e~l~~~~~~g~~~~iV~~~~~~~-gp~~~~~~q---~d 119 (595)
T TIGR03336 60 EVAAGAAWS-------------GLRAFCTMKHVGLNVA---ADPLMTLAYTGVKGGLVVVVADDP-SMHSSQNEQ---DT 119 (595)
T ss_pred HHHHHHHhc-------------CcceEEEccCCchhhh---HHHhhhhhhhcCcCceEEEEccCC-CCccchhhH---hH
Confidence 688999987 33444444434444 4 44454444 33677777777653 222111111 22
Q ss_pred hhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCC
Q 019523 184 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 237 (339)
Q Consensus 184 ~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~ 237 (339)
.. .++..+++ ..+-.++.++++....|++.+.+.+-|++|-... .-+|+
T Consensus 120 ~~-~~~~~~~~--vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~--~l~h~ 168 (595)
T TIGR03336 120 RH-YAKFAKIP--CLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTT--RISHM 168 (595)
T ss_pred HH-HHHhcCCe--EECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEee--eeccc
Confidence 21 23345776 4456678899999999999999999999998864 44554
No 217
>PRK06154 hypothetical protein; Provisional
Probab=86.89 E-value=3.4 Score=42.73 Aligned_cols=91 Identities=19% Similarity=0.185 Sum_probs=58.5
Q ss_pred EEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHH
Q 019523 132 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAK 211 (339)
Q Consensus 132 vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~ 211 (339)
+++..|=|.++. .-.+..|..-+.|||+|+-...... . ......+...+++.+--...+|+ ++.++.+.+.
T Consensus 85 ~~~t~GPG~~N~---~~gla~A~~~~~Pvl~i~G~~~~~~--~--~~~~~~d~~~~~~~vtk~~~~v~--~~~~~~~~i~ 155 (565)
T PRK06154 85 FAVQYGPGAENA---FGGVAQAYGDSVPVLFLPTGYPRGS--T--DVAPNFESLRNYRHITKWCEQVT--LPDEVPELMR 155 (565)
T ss_pred EEECCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCccc--c--cCCCCcchhhhHhhcceeEEECC--CHHHHHHHHH
Confidence 334457777762 5678899999999999985432111 0 00011233345555444455664 5568888899
Q ss_pred HHHHHHHcC-CCCEEEEEEEe
Q 019523 212 EAIERARRG-EGPTLVECETY 231 (339)
Q Consensus 212 ~A~~~ar~~-~gP~lIev~t~ 231 (339)
+|++.|+.+ .||++|++...
T Consensus 156 ~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 156 RAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred HHHHHHhcCCCceEEEecchH
Confidence 999999885 58999999544
No 218
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=85.04 E-value=5.1 Score=38.98 Aligned_cols=100 Identities=23% Similarity=0.190 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCC--------CCEEEEEEcCCeeeccccc
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWK--------LPIVFVVENNLWAIGMSHL 176 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~--------Lpvi~vv~NN~~~i~~~~~ 176 (339)
.++.|.|+|++ + .++++++.. ..|.+=.+-|-.+.++.++ +||+++..+ +...+....
T Consensus 86 ~vg~AaGlA~~-----------G-~~P~v~~~~-~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g~G~t 151 (356)
T PLN02683 86 FTGIGVGAAYA-----------G-LKPVVEFMT-FNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAGVGAQ 151 (356)
T ss_pred HHHHHHHHHHC-----------C-CEEEEEEeh-hhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCCCCCc
Confidence 45667777765 2 344444431 1222223344456667665 999999877 433332111
Q ss_pred ccccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEE
Q 019523 177 RATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVE 227 (339)
Q Consensus 177 ~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIe 227 (339)
.+..+. ...+ .+|+++| .-.|..++...++ .+...++|++|-
T Consensus 152 --H~~~~~-a~lr--~iPnl~V~~Pad~~e~~~~l~----~a~~~~gPv~ir 194 (356)
T PLN02683 152 --HSQCFA-AWYS--SVPGLKVLAPYSSEDARGLLK----AAIRDPDPVVFL 194 (356)
T ss_pred --cccCHH-HHHh--cCCCCEEEEeCCHHHHHHHHH----HHHhCCCcEEEE
Confidence 111222 3333 3566644 4456667666544 444567899985
No 219
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=84.47 E-value=5 Score=40.50 Aligned_cols=100 Identities=22% Similarity=0.182 Sum_probs=54.6
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHH--------hCCCCEEEEEEcCCeeeccccc
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA--------LWKLPIVFVVENNLWAIGMSHL 176 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~--------~~~Lpvi~vv~NN~~~i~~~~~ 176 (339)
.++.|.|+|++ + -++++.+..= .|.+=.+-+-.|.++ .+++||+|+..|.++.....
T Consensus 201 ~vg~AaGlA~~-----------G-~rPiv~~~~~-~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~-- 265 (464)
T PRK11892 201 FAGIGVGAAFA-----------G-LKPIVEFMTF-NFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA-- 265 (464)
T ss_pred HHHHHHHHHhC-----------C-CEEEEEEehH-HHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC--
Confidence 35667777765 2 3444444321 122223345556677 89999999988776322212
Q ss_pred ccccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEE
Q 019523 177 RATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVE 227 (339)
Q Consensus 177 ~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIe 227 (339)
+.+..+. .+.+ .+|+++| .-.|+.+....++.+ ...++|++|-
T Consensus 266 -hhs~~d~-a~~~--~iPgl~V~~P~d~~d~~~ll~~a----i~~~~Pv~il 309 (464)
T PRK11892 266 -QHSQDYA-AWYS--HIPGLKVVAPYSAADAKGLLKAA----IRDPNPVIFL 309 (464)
T ss_pred -ccccCHH-HHHh--hCCCCEEEEeCCHHHHHHHHHHH----hhCCCcEEEE
Confidence 2222333 2333 4555544 445666665555444 4567899873
No 220
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=83.87 E-value=5.8 Score=41.57 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhh
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 184 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~ 184 (339)
.++.|.|+|+. +.++|+.+ =+.|.+-.+-|-.+.++..++||++++...++. +..-.......|+
T Consensus 364 ~vg~AaGlA~~-------------G~~Pvv~~-~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~-g~dG~tH~~~~di 428 (617)
T TIGR00204 364 AVTFAAGMAIE-------------GYKPFVAI-YSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIV-GADGETHQGAFDI 428 (617)
T ss_pred HHHHHHHHHHC-------------CCEEEEEe-cHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcC-CCCCcccccchHH
Confidence 35567776654 33444444 455665443344567889999999998877743 2211111123343
Q ss_pred hhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 019523 185 YKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 185 ~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIev 228 (339)
+- --.+|+++| .-.|+.++...++.|++ ..++|++|-.
T Consensus 429 a~---lr~iPgl~V~~Psd~~e~~~~l~~a~~---~~~~Pv~ir~ 467 (617)
T TIGR00204 429 SY---LRCIPNMVIMAPSDENELRQMLYTGYH---YDDGPIAVRY 467 (617)
T ss_pred HH---HhcCCCcEEEeeCCHHHHHHHHHHHHh---CCCCCEEEEE
Confidence 32 225666654 45576776665555442 2348998844
No 221
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=83.34 E-value=2.7 Score=35.27 Aligned_cols=106 Identities=14% Similarity=0.221 Sum_probs=64.6
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHH-HHHHhCCCCEEEEEEcCCeeeccccccccc-Ch
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECL-NMAALWKLPIVFVVENNLWAIGMSHLRATS-DP 182 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal-~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~-~~ 182 (339)
+++++.|+.+| + +...+.+ -..++... ..+| ++-..+++|+++++...++--... ..|.+ ..
T Consensus 54 g~GIcAGa~lA-----------G-kk~ailm-QnsGlGNs--iNal~SL~~ty~iPl~ml~ShRG~~~E~i-~AQVpmGr 117 (172)
T COG4032 54 GVGICAGAYLA-----------G-KKPAILM-QNSGLGNS--INALASLYVTYKIPLLMLASHRGVLKEGI-EAQVPMGR 117 (172)
T ss_pred ceeeehhhhhc-----------C-CCcEEEE-eccCcchH--HHHHHHHHHHhccchhhhhhccchhhcCC-ccccccch
Confidence 44568899998 2 2233333 22222222 2333 234689999998888777422211 22221 22
Q ss_pred hhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 019523 183 QIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 183 d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev 228 (339)
..-++-+.+++|.+++.+.. +-+..+..+...+.+...|+.+-+
T Consensus 118 ~~~kiLe~~~lpt~t~~~p~--Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 118 ALPKILEGLELPTYTIIGPE--EALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred hhHHHHhhcCCcccccCCHH--HHHHHHHHHHHHHHHcCCceEEEe
Confidence 34456678899999987754 666778888888888889987654
No 222
>PTZ00089 transketolase; Provisional
Probab=82.14 E-value=9.4 Score=40.37 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=54.9
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEe-cCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~ 208 (339)
+++++.+. .|.+ -.++.+..++..+|||+||+...+++.+..-....+..|+ +---.+|.+.| .-.|..++..
T Consensus 429 ~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~iedi---a~lR~iPn~~V~~PaD~~E~~~ 502 (661)
T PTZ00089 429 IPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVETL---ALLRATPNLLVIRPADGTETSG 502 (661)
T ss_pred eEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHHH---HHHhcCCCcEEEecCCHHHHHH
Confidence 45555543 6655 4477799999999999999988875554321111122333 32334666655 4567677666
Q ss_pred HHHHHHHHHHcCCCCEEEEE
Q 019523 209 VAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 209 a~~~A~~~ar~~~gP~lIev 228 (339)
+++.|+. ..++|+.|-.
T Consensus 503 ~l~~al~---~~~gP~~irl 519 (661)
T PTZ00089 503 AYALALA---NAKTPTILCL 519 (661)
T ss_pred HHHHHHH---cCCCCEEEEe
Confidence 5444442 4578999865
No 223
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=81.25 E-value=6 Score=34.24 Aligned_cols=105 Identities=20% Similarity=0.191 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHHHhhhhhhccCC-CcEEEEEeCCCCccc---chHHHHHH-HHHhCCCCEEEEEEcCCeeecccccccc
Q 019523 105 GIPVATGAAFTSKYRREVLKEADC-DHVTLAFFGDGTCNN---GQFFECLN-MAALWKLPIVFVVENNLWAIGMSHLRAT 179 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~-~~~vv~~~GDG~~~~---g~~~eal~-~A~~~~Lpvi~vv~NN~~~i~~~~~~~~ 179 (339)
.++.|.|+|++ ++ ..+++..+++ |.. -...+.+. ..+..++|+. |+..-+++.+.......
T Consensus 60 ~vg~a~GlA~~-----------G~~~~~~~~~f~~--F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~ 125 (178)
T PF02779_consen 60 MVGMAAGLALA-----------GGLRPPVESTFAD--FLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHH 125 (178)
T ss_dssp HHHHHHHHHHH-----------SSSEEEEEEEEGG--GGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTS
T ss_pred ccceeeeeeec-----------ccccceeEeeccc--cccccchhhhhhhhhhhhcccceec-ceeecCccccccccccc
Confidence 46778888887 32 3344444444 433 12244444 6788899988 55554433322211122
Q ss_pred cChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 019523 180 SDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 180 ~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIev 228 (339)
+..+..- .+ .+|+++| .-.|+.++...++.+++. +.++|++|-.
T Consensus 126 s~~d~~~-~~--~iPg~~v~~Psd~~e~~~~l~~a~~~--~~~~P~~ir~ 170 (178)
T PF02779_consen 126 SIEDEAI-LR--SIPGMKVVVPSDPAEAKGLLRAAIRR--ESDGPVYIRE 170 (178)
T ss_dssp SSSHHHH-HH--TSTTEEEEE-SSHHHHHHHHHHHHHS--SSSSEEEEEE
T ss_pred ccccccc-cc--cccccccccCCCHHHHHHHHHHHHHh--CCCCeEEEEe
Confidence 2333332 23 3455543 456777766655544431 2689998855
No 224
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=80.98 E-value=4.9 Score=46.95 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=59.3
Q ss_pred CcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCee-ecccccccccChhhhhhcccCCCcEEEecCCCH----
Q 019523 129 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV---- 203 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~-i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~---- 203 (339)
..+++|..|=|.++. +-++..|..-+.|||+|.-+-... .+.. ..| ..|...+++.+--...+|...+-
T Consensus 365 pgV~i~TsGPG~tN~---l~av~eA~~d~vPlLvItgd~p~~~~~~g-a~Q--~iDq~~lf~pvtK~s~~v~~p~~~~~~ 438 (1655)
T PLN02980 365 PAVVITSSGTAVSNL---LPAVVEASQDFVPLLLLTADRPPELQDAG-ANQ--AINQVNHFGSFVRFFFNLPPPTDLIPA 438 (1655)
T ss_pred CEEEEEeCcHHHHHH---HHHHHHHhhcCCCEEEEeCCCCHHHhcCC-CCc--ccchhhHHHhhhheeecCCCccchhhH
Confidence 345566667776662 668999999999999998765421 1111 112 12444555555545566643321
Q ss_pred HHHHHHHHHHHHHHHcCC-CCEEEEEE
Q 019523 204 LKVREVAKEAIERARRGE-GPTLVECE 229 (339)
Q Consensus 204 ~~v~~a~~~A~~~ar~~~-gP~lIev~ 229 (339)
..+...+++|+..++.++ ||+.|++.
T Consensus 439 ~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 439 RMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 113467788888888864 99999996
No 225
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=80.46 E-value=8.7 Score=40.55 Aligned_cols=82 Identities=22% Similarity=0.271 Sum_probs=49.2
Q ss_pred CcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHH
Q 019523 140 TCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERAR 218 (339)
Q Consensus 140 ~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar 218 (339)
.|.+ -.++.+.+++..++||++|....+++.+.......+..|++-+ + .+|.++| .-.|..++..+++.+++
T Consensus 430 ~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~l-r--~iPn~~v~~PaD~~E~~~~~~~a~~--- 502 (653)
T TIGR00232 430 MFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASL-R--AIPNLSVWRPCDGNETAAAWKYALE--- 502 (653)
T ss_pred HHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHH-h--cCCCCEEEeeCCHHHHHHHHHHHHh---
Confidence 4443 3367888899999999999988775554321111133343322 2 4555544 44576677665555542
Q ss_pred cCCCCEEEEE
Q 019523 219 RGEGPTLVEC 228 (339)
Q Consensus 219 ~~~gP~lIev 228 (339)
..++|++|-.
T Consensus 503 ~~~gP~~irl 512 (653)
T TIGR00232 503 SQDGPTALIL 512 (653)
T ss_pred cCCCcEEEEE
Confidence 4578998844
No 226
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=80.03 E-value=0.67 Score=46.14 Aligned_cols=54 Identities=11% Similarity=-0.093 Sum_probs=38.8
Q ss_pred CCCHHHHHHHhhCCCCC--CCcCCCCcccc-----ccC---CC--cccccccccccchHHHHHHHH
Q 019523 61 GVPARAVMSELFGKATG--CCRGQGGSMHM-----FSK---EH--NLLGGFAFIGEGIPVATGAAF 114 (339)
Q Consensus 61 g~~p~~~~~el~~~~~~--~~~g~~G~~h~-----~~~---~~--~~~~~~g~lG~~~p~AiG~a~ 114 (339)
+++|..++.+|...+++ ++..+.|+... +.. +. ..+.+.|.||+++|.|+|+++
T Consensus 366 ~i~p~~~~~~l~~~lp~d~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 366 PLSELSLARALSQLLPEGAALFVGNSMPIRDLDTFAQPPDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred CccHHHHHHHHHHhCCCCCeEEEECCHHHHHHHhcCCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 48899999999999875 34566664322 211 12 235677999999999999985
No 227
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=79.96 E-value=8.4 Score=40.04 Aligned_cols=89 Identities=10% Similarity=-0.021 Sum_probs=49.6
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEe-cCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~ 208 (339)
+++++.+.+ |.+-.+-|-.+.++..++||+|++...++....+++. ...|++-+ -.+|.+.| .-.|+.++..
T Consensus 345 ~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~--~~~Dia~l---r~iPnl~V~~P~d~~e~~~ 417 (581)
T PRK12315 345 RPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHL--GIFDIPMI---SNIPNLVYLAPTTKEELIA 417 (581)
T ss_pred eEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCcccc--ccHHHHHH---hcCCCCEEEecCCHHHHHH
Confidence 445444443 4443333345557889999999998665432222222 23344322 24666655 4567777766
Q ss_pred HHHHHHHHHHcCCCCEEEEE
Q 019523 209 VAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 209 a~~~A~~~ar~~~gP~lIev 228 (339)
.++.|++ ..++|++|-.
T Consensus 418 ~l~~a~~---~~~gP~~ir~ 434 (581)
T PRK12315 418 MLEWALT---QHEHPVAIRV 434 (581)
T ss_pred HHHHHHh---CCCCcEEEEE
Confidence 5554442 2368999855
No 228
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=79.84 E-value=36 Score=31.76 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=56.9
Q ss_pred EEEEEeCCCC--cccchHHHHHHHHHhCCCCEEEEEEcCC-eeeccccccc----cc-ChhhhhhcccCCCcEEEecCCC
Q 019523 131 VTLAFFGDGT--CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRA----TS-DPQIYKKGPAFGMPGFHVDGMD 202 (339)
Q Consensus 131 ~vv~~~GDG~--~~~g~~~eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~----~~-~~d~~~~a~a~G~~~~~Vdg~d 202 (339)
.++.++.||. +.++..-..+.-|...++-++||+.+|. -+.|.-...+ .. ...+....+.|+.|++.|= .|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7899999999 7788766668888889999888887774 1222110000 01 1155677889999999663 46
Q ss_pred HHHHHHHHHHHHH
Q 019523 203 VLKVREVAKEAIE 215 (339)
Q Consensus 203 ~~~v~~a~~~A~~ 215 (339)
+.++-+.+..+++
T Consensus 245 ~~~lp~~l~~~lr 257 (266)
T cd01460 245 LNQLPSVLSDALR 257 (266)
T ss_pred hhHhHHHHHHHHH
Confidence 6677777766665
No 229
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=79.46 E-value=12 Score=38.33 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=52.2
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCee-ecc-----cccccccChhhhhhcccCCCcEEEecCCCH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGM-----SHLRATSDPQIYKKGPAFGMPGFHVDGMDV 203 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~-i~~-----~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~ 203 (339)
..+++..|=|.++. .-.+..|-.-+.|||+|.-.-... ... .........++.++++..--....++..
T Consensus 65 gv~~~t~GPG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~itk~~~~~~~~-- 139 (539)
T TIGR03393 65 AALLTTFGVGELSA---INGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYRMAAEVTVAQAVLTEQ-- 139 (539)
T ss_pred eEEEEecCccHHHH---hhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHHHHhhceEEEEEEeChh--
Confidence 35556668888773 446888999999999998543211 000 0000001112233333332223333322
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 019523 204 LKVREVAKEAIERARRGEGPTLVECETY 231 (339)
Q Consensus 204 ~~v~~a~~~A~~~ar~~~gP~lIev~t~ 231 (339)
++.+.+.+|++.|...+||++|++...
T Consensus 140 -~~~~~i~~a~~~A~~~~gPv~l~iP~D 166 (539)
T TIGR03393 140 -NATAEIDRVITTALRERRPGYLMLPVD 166 (539)
T ss_pred -hhHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 334456667777766789999999654
No 230
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=79.24 E-value=8.3 Score=40.55 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeee-cccccccccChhh
Q 019523 106 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQI 184 (339)
Q Consensus 106 ~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i-~~~~~~~~~~~d~ 184 (339)
+..|.|+|+. + -+++++++ +.|.+-.+-|-.+.++..++||+|++...++.- ..+++. ...|+
T Consensus 412 Vg~AaGLA~~-----------G-~rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~--~~~Di 475 (641)
T PLN02234 412 VTFAAGLACE-----------G-LKPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHC--GAFDV 475 (641)
T ss_pred HHHHHHHHHC-----------C-CeEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCcccc--ccHHH
Confidence 4556666654 2 34444443 345543333445677899999999997776421 112221 22333
Q ss_pred hhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC
Q 019523 185 YKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 234 (339)
Q Consensus 185 ~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~ 234 (339)
+- .-.+|++.| .-.|+.++...++.|+. ..++|++| +..|..
T Consensus 476 a~---lr~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~Pv~i--r~~R~~ 518 (641)
T PLN02234 476 TF---MACLPNMIVMAPSDEAELFNMVATAAA---IDDRPSCF--RYHRGN 518 (641)
T ss_pred HH---HhcCCCCEEEeeCCHHHHHHHHHHHHh---CCCCCEEE--Eeeccc
Confidence 22 224566655 44577776665544432 34589988 455543
No 231
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=79.05 E-value=9.9 Score=40.26 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeec-ccccccccChhh
Q 019523 106 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG-MSHLRATSDPQI 184 (339)
Q Consensus 106 ~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~-~~~~~~~~~~d~ 184 (339)
+..|.|+|+. + -+++++++ ..|.+=.+-|-++-++..++||+|++...++... .+++. ...|+
T Consensus 411 vg~AaGLA~~-----------G-~kPvv~~f--s~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~--~~~Di 474 (677)
T PLN02582 411 VTFAAGLACE-----------G-LKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GAFDV 474 (677)
T ss_pred HHHHHHHHHC-----------C-CeEEEEec--HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCccc--ccHHH
Confidence 4556666654 2 34555554 3465544445667788999999999887764221 12111 23343
Q ss_pred hhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCC
Q 019523 185 YKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 234 (339)
Q Consensus 185 ~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~ 234 (339)
+-+ -.+|+++| .-.|..++...++.|+. ..++|++|-. .|..
T Consensus 475 a~l---r~iPnl~V~~Psd~~E~~~~l~~al~---~~~gPv~IR~--pr~~ 517 (677)
T PLN02582 475 TYM---ACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY--PRGN 517 (677)
T ss_pred HHH---hcCCCCEEEeeCCHHHHHHHHHHHHh---CCCCCEEEEE--ecCC
Confidence 322 24566654 44576676665554442 2458998844 4543
No 232
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=78.88 E-value=9.1 Score=39.75 Aligned_cols=101 Identities=15% Similarity=0.185 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeec-ccccccccChhh
Q 019523 106 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG-MSHLRATSDPQI 184 (339)
Q Consensus 106 ~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~-~~~~~~~~~~d~ 184 (339)
+++|.|+|+. +.++|+.+ =..|..=.+-|-.+.++..++||+++....++... .+++ | ...|+
T Consensus 334 vg~A~GlA~~-------------G~~p~~~~-f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH-~-~~edi 397 (580)
T PRK05444 334 VTFAAGLATE-------------GLKPVVAI-YSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTH-Q-GAFDL 397 (580)
T ss_pred HHHHHHHHHC-------------CCeeEEEe-eHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccc-c-ccHHH
Confidence 4566777664 23444433 44565433333556588999999999987664211 1111 1 23344
Q ss_pred hhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 019523 185 YKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 185 ~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIev 228 (339)
+-+. .+|++.| .-.|+.++...++.|++ ..++|++|-.
T Consensus 398 a~lr---~iP~l~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~ 436 (580)
T PRK05444 398 SYLR---CIPNMVIMAPSDENELRQMLYTALA---YDDGPIAIRY 436 (580)
T ss_pred HHHh---cCCCCEEEeeCCHHHHHHHHHHHHh---CCCCcEEEEe
Confidence 3322 4555544 45677777665555543 2378998854
No 233
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=78.69 E-value=12 Score=39.76 Aligned_cols=102 Identities=8% Similarity=-0.024 Sum_probs=58.9
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeee-cccccccccChh
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQ 183 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i-~~~~~~~~~~~d 183 (339)
.+..|.|+|.. .-++++++. ..|.+=.+-|-.+-++..++||+|++..-++.. ..+++ ....|
T Consensus 435 aVt~AAGLA~~------------G~kPvv~iy--stFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH--~g~~D 498 (701)
T PLN02225 435 AVTFSAGLSSG------------GLKPFCIIP--SAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQ--CGAFD 498 (701)
T ss_pred HHHHHHHHHHC------------CCEEEEEee--hhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCccc--cccHH
Confidence 34556666653 346677777 367664445556668899999999987655321 11111 12334
Q ss_pred hhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 019523 184 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 184 ~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIev 228 (339)
++-+ -.+|.++| .-.|..++...++.|+. ..++|++|-.
T Consensus 499 ia~l---r~IPnm~V~aPsD~~El~~mL~~A~~---~~~gPv~IR~ 538 (701)
T PLN02225 499 IAFM---SSLPNMIAMAPADEDELVNMVATAAY---VTDRPVCFRF 538 (701)
T ss_pred HHHH---hcCCCCEEEeeCCHHHHHHHHHHHHh---cCCCCEEEEe
Confidence 4322 24566655 44577777665544432 3568999854
No 234
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=75.80 E-value=15 Score=38.66 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHH-HHHHhCCCCEEEEEEcCCee-ecccccccccChh
Q 019523 106 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECL-NMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQ 183 (339)
Q Consensus 106 ~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal-~~A~~~~Lpvi~vv~NN~~~-i~~~~~~~~~~~d 183 (339)
++.|.|+|+. .-+++++++. .|.+- .++.+ +.++..++||++++...++. ...+++. ...|
T Consensus 374 vg~AaGlA~~------------G~~P~v~~f~--~Fl~r-a~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq--~~~d 436 (641)
T PRK12571 374 VTFAAGLAAA------------GLKPFCAVYS--TFLQR-GYDQLLHDVALQNLPVRFVLDRAGLVGADGATHA--GAFD 436 (641)
T ss_pred HHHHHHHHHC------------CCEEEEEehH--HHHHH-HHHHHHHHHhhcCCCeEEEEECCCcCCCCCcccc--ccHH
Confidence 4566666653 2344555443 46553 35554 66889999999998666632 1111211 2234
Q ss_pred hhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 019523 184 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 184 ~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIev 228 (339)
++-+ -.+|++.| .-.|+.++...++.|++ ..++|++|-.
T Consensus 437 ia~l---r~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~ 476 (641)
T PRK12571 437 LAFL---TNLPNMTVMAPRDEAELRHMLRTAAA---HDDGPIAVRF 476 (641)
T ss_pred HHHH---hcCCCCEEEeeCCHHHHHHHHHHHHh---CCCCcEEEEE
Confidence 3322 24566644 45577777665555542 1479999854
No 235
>PLN02790 transketolase
Probab=74.80 E-value=25 Score=37.21 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=47.0
Q ss_pred HHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEE
Q 019523 147 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTL 225 (339)
Q Consensus 147 ~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~l 225 (339)
.+++..++..+|||+||+...+.+.+..-....+ +.+++---.+|.+.| .-.|..++..+++.++. ..++|+.
T Consensus 433 ~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~---iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~---~~~gP~~ 506 (654)
T PLN02790 433 RAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQP---IEHLASLRAMPNILMLRPADGNETAGAYKVAVT---NRKRPTV 506 (654)
T ss_pred HHHHHHHHhcCCCeEEEEECCceeecCCCCCccc---HHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHH---cCCCCEE
Confidence 5678888999999999998887555432111112 333333335666655 45676676665544442 2578988
Q ss_pred EEE
Q 019523 226 VEC 228 (339)
Q Consensus 226 Iev 228 (339)
|-.
T Consensus 507 irl 509 (654)
T PLN02790 507 LAL 509 (654)
T ss_pred EEe
Confidence 855
No 236
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=74.69 E-value=18 Score=30.66 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCC-CCEEEEEEc-CCeeecccccccccChh
Q 019523 106 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWK-LPIVFVVEN-NLWAIGMSHLRATSDPQ 183 (339)
Q Consensus 106 ~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~-Lpvi~vv~N-N~~~i~~~~~~~~~~~d 183 (339)
++.|.|+|+. +. ++++++...-. ... .+.+.+...++ .|+|+.... ..++...+++ + +..+
T Consensus 62 vg~a~GlA~~-----------G~-~pi~~~~~~f~-~~a--~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH-~-~~~~ 124 (168)
T smart00861 62 VGFAAGLALA-----------GL-RPVVAIFFTFF-DRA--KDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTH-H-SQED 124 (168)
T ss_pred HHHHHHHHHc-----------CC-CcEEEeeHHHH-HHH--HHHHHHhCcccCCCEEEEecCccccCCCCccc-c-chhH
Confidence 4567777765 33 55555553322 233 77777777776 555555433 2323212211 1 2223
Q ss_pred hhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 019523 184 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 184 ~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIev 228 (339)
+.-+ -++|.+.| .-.|+.++...++.+++ ..++|++|-+
T Consensus 125 ~~~~---~~iP~~~v~~P~~~~e~~~~l~~a~~---~~~~p~~i~~ 164 (168)
T smart00861 125 EALL---RAIPGLKVVAPSDPAEAKGLLRAAIR---RDDGPPVIRL 164 (168)
T ss_pred HHHH---hcCCCcEEEecCCHHHHHHHHHHHHh---CCCCCEEEEe
Confidence 3222 25565543 56677777776666652 3468977644
No 237
>PRK05899 transketolase; Reviewed
Probab=72.20 E-value=19 Score=37.72 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhCCCCEEEEEEcCCeeecc--cccccccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcC-
Q 019523 145 QFFECLNMAALWKLPIVFVVENNLWAIGM--SHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRG- 220 (339)
Q Consensus 145 ~~~eal~~A~~~~Lpvi~vv~NN~~~i~~--~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~- 220 (339)
-.++.+.+.+..++||+++....++..+. +++ | +..|++- --.+|+++| .-.|+.++...++.++ ..
T Consensus 405 r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH-q-~~edia~---~r~iP~~~V~~P~d~~e~~~~l~~a~----~~~ 475 (624)
T PRK05899 405 YARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH-Q-PVEQLAS---LRAIPNLTVIRPADANETAAAWKYAL----ERK 475 (624)
T ss_pred HHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc-c-cHHHHHH---HHhCCCcEEEeCCCHHHHHHHHHHHH----HcC
Confidence 34777888889999999999887754432 222 2 2233322 224566644 4567777666554444 44
Q ss_pred CCCEEEEE
Q 019523 221 EGPTLVEC 228 (339)
Q Consensus 221 ~gP~lIev 228 (339)
++|++|-.
T Consensus 476 ~~P~~ir~ 483 (624)
T PRK05899 476 DGPSALVL 483 (624)
T ss_pred CCCEEEEE
Confidence 79998866
No 238
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=71.60 E-value=22 Score=33.64 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=39.8
Q ss_pred CCCcEEEEEeCCCCcccchHHHHHHHHHhCC-CC--EEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecC
Q 019523 127 DCDHVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 200 (339)
Q Consensus 127 ~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~-Lp--vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg 200 (339)
.+.+++|.+.|.|+. +++|-.+.+.+ || ++.|+.||. +..++|+.+|+|.+.++-
T Consensus 92 ~~~kiavl~Sg~g~n-----l~al~~~~~~~~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~ 149 (289)
T PRK13010 92 QRPKVVIMVSKFDHC-----LNDLLYRWRMGELDMDIVGIISNHP--------------DLQPLAVQHDIPFHHLPV 149 (289)
T ss_pred CCeEEEEEEeCCCcc-----HHHHHHHHHCCCCCcEEEEEEECCh--------------hHHHHHHHcCCCEEEeCC
Confidence 345788888888765 56677776543 45 888888875 345788899999998753
No 239
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=70.57 E-value=24 Score=34.39 Aligned_cols=62 Identities=23% Similarity=0.230 Sum_probs=31.8
Q ss_pred CCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEE
Q 019523 156 WKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVE 227 (339)
Q Consensus 156 ~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIe 227 (339)
+++|++++.....++...+++.+ .+..+.+ .+|+++| .-.|+.++...++.++ ..++|++|-
T Consensus 140 ~~v~vv~~~~~g~~g~~G~tHs~----~~ea~lr--~iPn~~V~~Psd~~e~~~~l~~a~----~~~~P~~i~ 202 (355)
T PTZ00182 140 FDCPIVIRGPNGAVGHGGAYHSQ----SFEAYFA--HVPGLKVVAPSDPEDAKGLLKAAI----RDPNPVVFF 202 (355)
T ss_pred ccCCEEEEeCCCCCCCCCCcccc----hHHHHHh--cCCCCEEEeeCCHHHHHHHHHHHH----hCCCcEEEE
Confidence 35667666433343333333322 1113333 4555544 4456667666555544 457999773
No 240
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=70.33 E-value=28 Score=32.90 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=63.9
Q ss_pred ccccc-chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHH-HHHHhCCCCEEEEEEcCCeeecccccc
Q 019523 100 AFIGE-GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECL-NMAALWKLPIVFVVENNLWAIGMSHLR 177 (339)
Q Consensus 100 g~lG~-~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal-~~A~~~~Lpvi~vv~NN~~~i~~~~~~ 177 (339)
|+.-+ .++.|.|.|++ + ..+.+ ++=+.|.++-.||=+ +..+..+|||.+|+.+-+++.+.....
T Consensus 55 GIaEQ~mvg~AAGLA~~-----------G-k~Pfv--~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~s 120 (312)
T COG3958 55 GIAEQDMVGTAAGLALA-----------G-KKPFV--STFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSS 120 (312)
T ss_pred chHHHHHHHHHHHHHhc-----------C-CCcee--echHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCcc
Confidence 44443 36677787776 2 22333 344677775445554 455688999999999998555432111
Q ss_pred cccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 019523 178 ATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 178 ~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIev 228 (339)
. .-+.++|---|+|-..| .-.|..+ .++++..+...+||+.+-.
T Consensus 121 H---q~~EDiaimR~lpn~~V~~P~D~v~----~~~i~~~~~~~~GP~Y~Rl 165 (312)
T COG3958 121 H---QALEDIAIMRGLPNMTVIAPADAVE----TRAILDQIADYKGPVYMRL 165 (312)
T ss_pred c---hhHHHHHHHhcCCCceEEccCcHHH----HHHHHHHHHhcCCCEEEEe
Confidence 1 12333333335655544 5556443 4557777778899998844
No 241
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=70.05 E-value=7.9 Score=31.05 Aligned_cols=76 Identities=24% Similarity=0.180 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEE--EecCCCH-HHHHHHHHHHHHHHHcCCCC
Q 019523 147 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGF--HVDGMDV-LKVREVAKEAIERARRGEGP 223 (339)
Q Consensus 147 ~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~--~Vdg~d~-~~v~~a~~~A~~~ar~~~gP 223 (339)
-+.+..++..+...| .||. .-+- ...+....+..+.++++|+.++ .|.+.++ .+-.+++.++++ ...+|
T Consensus 17 ~~d~~~la~~GfktV---InlR-pd~E-~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~P 88 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTV---INLR-PDGE-EPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKP 88 (110)
T ss_dssp HHHHHHHHHCT--EE---EE-S--TTS-TTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH---TTTTS
T ss_pred HHHHHHHHHCCCcEE---EECC-CCCC-CCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCC
Confidence 556667777776643 2443 1110 1112233456678889999887 4454433 222233444443 35789
Q ss_pred EEEEEEE
Q 019523 224 TLVECET 230 (339)
Q Consensus 224 ~lIev~t 230 (339)
+++.|++
T Consensus 89 vl~hC~s 95 (110)
T PF04273_consen 89 VLAHCRS 95 (110)
T ss_dssp EEEE-SC
T ss_pred EEEECCC
Confidence 9999954
No 242
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=69.96 E-value=23 Score=33.98 Aligned_cols=101 Identities=24% Similarity=0.168 Sum_probs=49.9
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhC--------CCCEEEEEEcCCeeeccccc
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW--------KLPIVFVVENNLWAIGMSHL 176 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~--------~Lpvi~vv~NN~~~i~~~~~ 176 (339)
.++.|.|+|++ + -++++++..- .|.+=.+-|-.+-++.. ++|+++...+-.++...+++
T Consensus 63 ~vg~AaGlA~~-----------G-~~Piv~~~~~-~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH 129 (327)
T PRK09212 63 FAGLAVGAAFA-----------G-LRPIVEFMTF-NFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQH 129 (327)
T ss_pred HHHHHHHHHHc-----------C-CeeEEEeehh-hHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCccc
Confidence 35667777765 2 3455554431 12222223333444444 57777775543332222222
Q ss_pred ccccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 019523 177 RATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 177 ~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIev 228 (339)
.+. +..+.+ .+|+++| .-.|+.++...++.|+ ..++|++|-.
T Consensus 130 ~~~----~ea~~r--~iP~l~V~~P~d~~e~~~~l~~a~----~~~~Pv~i~~ 172 (327)
T PRK09212 130 SQC----YAAWYS--HIPGLKVVAPYFAADCKGLLKTAI----RDPNPVIFLE 172 (327)
T ss_pred ccC----HHHHHh--cCCCCEEEeeCCHHHHHHHHHHHH----hCCCcEEEEE
Confidence 221 112222 5666655 4567777666555444 4578998844
No 243
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=69.51 E-value=37 Score=30.24 Aligned_cols=81 Identities=23% Similarity=0.308 Sum_probs=52.1
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCC-CC--EEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 206 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~-Lp--vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v 206 (339)
+++|.+.|-||- +|++--|..-+ +| +..|+.||. +-...++|+.+|++...++-.+.. -
T Consensus 2 ki~VlaSG~GSN-----lqaiida~~~~~~~a~i~~Visd~~------------~A~~lerA~~~gIpt~~~~~k~~~-~ 63 (200)
T COG0299 2 KIAVLASGNGSN-----LQAIIDAIKGGKLDAEIVAVISDKA------------DAYALERAAKAGIPTVVLDRKEFP-S 63 (200)
T ss_pred eEEEEEeCCccc-----HHHHHHHHhcCCCCcEEEEEEeCCC------------CCHHHHHHHHcCCCEEEeccccCC-C
Confidence 468888888865 55666666533 34 778888874 123347888899999888755432 2
Q ss_pred HHHHHHHHHHHHcCCCCEEEEE
Q 019523 207 REVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 207 ~~a~~~A~~~ar~~~gP~lIev 228 (339)
.+++..++.......+|=+|-+
T Consensus 64 r~~~d~~l~~~l~~~~~dlvvL 85 (200)
T COG0299 64 REAFDRALVEALDEYGPDLVVL 85 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEE
Confidence 3345555555556677766655
No 244
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=69.42 E-value=18 Score=37.72 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=47.3
Q ss_pred HHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEE
Q 019523 147 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLV 226 (339)
Q Consensus 147 ~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lI 226 (339)
.-++.+|+..++|++||..-+.+++|..-....+...++.+=.-.++.++|= -|..+...+.+.|++ ..++|++|
T Consensus 442 r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RP--aD~~Et~~aw~~Al~---~~~gPt~L 516 (663)
T COG0021 442 RPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRP--ADANETAAAWKYALE---RKDGPTAL 516 (663)
T ss_pred hHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEec--CChHHHHHHHHHHHh---cCCCCeEE
Confidence 6689999999999999999998777653222223333433322235555532 233355555555544 25899998
Q ss_pred EE
Q 019523 227 EC 228 (339)
Q Consensus 227 ev 228 (339)
-.
T Consensus 517 il 518 (663)
T COG0021 517 IL 518 (663)
T ss_pred EE
Confidence 66
No 245
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=66.69 E-value=33 Score=38.82 Aligned_cols=108 Identities=18% Similarity=0.067 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCcEEE-EEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChh
Q 019523 105 GIPVATGAAFTSKYRREVLKEADCDHVTL-AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ 183 (339)
Q Consensus 105 ~~p~AiG~a~A~k~~~~~~~~~~~~~~vv-~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d 183 (339)
++.+++|++.+ +.++. +..|-|=+.| +|.|..++-..+|+|++|.+-.+.- ++........|
T Consensus 63 A~~av~GA~~a-------------Gara~T~TSs~GL~LM---~e~l~~~ag~~~P~Vi~va~R~~~~-~~~~i~~dh~D 125 (1165)
T TIGR02176 63 AAGAVHGALQT-------------GALTTTFTASQGLLLM---IPNMYKIAGELLPCVFHVSARAIAA-HALSIFGDHQD 125 (1165)
T ss_pred HHHHHHhHhhc-------------CCCEEEecChhHHHHH---HHHHHHHHhccCCEEEEEecCCCCC-CCCccCCCchH
Confidence 45667777765 33444 4444443334 6778666666899888888764221 11111111223
Q ss_pred hhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 184 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 184 ~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
+ ..++..|+ +.+-..++.+++.-...|...|.+.+.|+++-..-++
T Consensus 126 v-~~~R~~G~--ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~ 171 (1165)
T TIGR02176 126 V-MAARQTGF--AMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFR 171 (1165)
T ss_pred H-HHhhcCCe--EEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCce
Confidence 3 23455666 4445567778877777788878778889887665433
No 246
>PRK12753 transketolase; Reviewed
Probab=66.32 E-value=42 Score=35.54 Aligned_cols=82 Identities=23% Similarity=0.189 Sum_probs=50.3
Q ss_pred CcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHH
Q 019523 140 TCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERAR 218 (339)
Q Consensus 140 ~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar 218 (339)
.|.+ -.++.+.+++..++||++|....+++.+..-....+..|+ +---.+|.+.| .-.|..++..+++.|++
T Consensus 436 ~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedl---a~lR~iPn~~v~~PaD~~E~~~~~~~al~--- 508 (663)
T PRK12753 436 MFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQL---ASLRLTPNFSTWRPCDQVEAAVAWKLAIE--- 508 (663)
T ss_pred HHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHH---HHHhcCCCCEEEccCCHHHHHHHHHHHHh---
Confidence 5554 4588888999999999999988876664322111123333 33335566654 44566666665544442
Q ss_pred cCCCCEEEEE
Q 019523 219 RGEGPTLVEC 228 (339)
Q Consensus 219 ~~~gP~lIev 228 (339)
..++|+.|-+
T Consensus 509 ~~~gP~~irl 518 (663)
T PRK12753 509 RHNGPTALIL 518 (663)
T ss_pred cCCCCEEEEe
Confidence 2578988855
No 247
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=65.49 E-value=37 Score=31.92 Aligned_cols=56 Identities=18% Similarity=0.225 Sum_probs=39.1
Q ss_pred CCCcEEEEEeCCCCcccchHHHHHHHHHhCC-CC--EEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCC
Q 019523 127 DCDHVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 201 (339)
Q Consensus 127 ~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~-Lp--vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~ 201 (339)
.+.+++|.+.|-|+. +++|--+...+ || |+.|+.||. +...+|+.+|+|++.++..
T Consensus 83 ~~~ki~vl~Sg~g~n-----l~~l~~~~~~g~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~~ 141 (280)
T TIGR00655 83 KLKRVAILVSKEDHC-----LGDLLWRWYSGELDAEIALVISNHE--------------DLRSLVERFGIPFHYIPAT 141 (280)
T ss_pred CCcEEEEEEcCCChh-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEcCCC
Confidence 355788888888765 55666665443 44 888888874 3344688899999988753
No 248
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=63.94 E-value=24 Score=36.36 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=25.8
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEc
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVEN 166 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~N 166 (339)
..+++..|=|.++. .-++..|-..+.|||+|.-.
T Consensus 74 ~v~~vt~GpG~~N~---l~~i~~A~~~~~Pvl~IsG~ 107 (568)
T PRK07449 74 VAVIVTSGTAVANL---YPAVIEAGLTGVPLIVLTAD 107 (568)
T ss_pred EEEEECCccHHHhh---hHHHHHHhhcCCcEEEEECC
Confidence 35566668887763 55888999999999999654
No 249
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=62.40 E-value=46 Score=29.77 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=35.9
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhC-CCC--EEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCC
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALW-KLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 201 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~-~Lp--vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~ 201 (339)
++|.+.|-|+. ++++--+... .++ +++|+.||.. -...++|+.+|++.+..+..
T Consensus 2 i~vl~Sg~Gsn-----~~al~~~~~~~~l~~~i~~visn~~~------------~~~~~~A~~~gIp~~~~~~~ 58 (207)
T PLN02331 2 LAVFVSGGGSN-----FRAIHDACLDGRVNGDVVVVVTNKPG------------CGGAEYARENGIPVLVYPKT 58 (207)
T ss_pred EEEEEeCCChh-----HHHHHHHHHcCCCCeEEEEEEEeCCC------------ChHHHHHHHhCCCEEEeccc
Confidence 67888888865 5566555543 355 7888888851 12346778889999876543
No 250
>PRK12754 transketolase; Reviewed
Probab=61.68 E-value=61 Score=34.38 Aligned_cols=82 Identities=21% Similarity=0.178 Sum_probs=50.8
Q ss_pred CcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHHHHH
Q 019523 140 TCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERAR 218 (339)
Q Consensus 140 ~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar 218 (339)
.|.. -..+.+.+++..++||++|....+++.+..-....+..|+ +---.+|.+.| .-.|..++..+++.+++
T Consensus 436 ~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdl---a~lR~iPn~~V~~PaD~~E~~~~~~~a~~--- 508 (663)
T PRK12754 436 MFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQV---ASLRVTPNMSTWRPCDQVESAVAWKYGVE--- 508 (663)
T ss_pred HHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHH---HHHhcCCCcEEecCCCHHHHHHHHHHHHh---
Confidence 4443 4588899999999999999988876664422211123333 33335666655 55676776665555443
Q ss_pred cCCCCEEEEE
Q 019523 219 RGEGPTLVEC 228 (339)
Q Consensus 219 ~~~gP~lIev 228 (339)
..++|+.|-+
T Consensus 509 ~~~gP~yirl 518 (663)
T PRK12754 509 RQDGPTALIL 518 (663)
T ss_pred CCCCCEEEEe
Confidence 2368997754
No 251
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=59.98 E-value=50 Score=31.06 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=37.8
Q ss_pred CCCcEEEEEeCCCCcccchHHHHHHHHHhC---CCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecC
Q 019523 127 DCDHVTLAFFGDGTCNNGQFFECLNMAALW---KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 200 (339)
Q Consensus 127 ~~~~~vv~~~GDG~~~~g~~~eal~~A~~~---~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg 200 (339)
.+.+++|...|.|+. +|+|--+... +..|+.|+.|+. +...+|+.+|+|++.++-
T Consensus 88 ~~~ri~vl~Sg~gsn-----l~al~~~~~~~~~~~~i~~visn~~--------------~~~~lA~~~gIp~~~~~~ 145 (286)
T PRK06027 88 ERKRVVILVSKEDHC-----LGDLLWRWRSGELPVEIAAVISNHD--------------DLRSLVERFGIPFHHVPV 145 (286)
T ss_pred cCcEEEEEEcCCCCC-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEecc
Confidence 456778888888654 6667655443 334888888774 344568889999998753
No 252
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=59.02 E-value=23 Score=38.04 Aligned_cols=97 Identities=14% Similarity=0.074 Sum_probs=60.8
Q ss_pred CcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 129 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
+++.||+.|+.... ...-.+-.+|.+.+.|...|...+.-........+.......++|+.+|....++.|.|+.
T Consensus 249 e~ilvcI~~~~~~e-~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~dv~---- 323 (890)
T COG2205 249 ERILVCISGSPGSE-KLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGGDVA---- 323 (890)
T ss_pred ceEEEEECCCCchH-HHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCCcHH----
Confidence 67788888876543 3457788899999999655544443122222222222334567899999999999998843
Q ss_pred HHHHHHHHHHcCCCCEEEEEEEee
Q 019523 209 VAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 209 a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
+..+++|+..+---+|-=+..|
T Consensus 324 --~~i~~ya~~~~~TkiViG~~~~ 345 (890)
T COG2205 324 --KAIARYAREHNATKIVIGRSRR 345 (890)
T ss_pred --HHHHHHHHHcCCeeEEeCCCcc
Confidence 3345677766654454444333
No 253
>PRK11032 hypothetical protein; Provisional
Probab=56.89 E-value=46 Score=28.62 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhhC
Q 019523 259 ITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADES 298 (339)
Q Consensus 259 l~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~ 298 (339)
|...++++.+.|-+|++|++.+.+-++..+++..+...++
T Consensus 30 ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~~~~~ 69 (160)
T PRK11032 30 VESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEES 69 (160)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888999999999999999999999999999887765544
No 254
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=55.70 E-value=1.1e+02 Score=28.50 Aligned_cols=97 Identities=15% Similarity=0.120 Sum_probs=54.5
Q ss_pred cccchHHHHHHHHHHHHhhhhhhccCC-CcEEEEEeCCCCcc----cchHHHHHHHHHhC---CCCEEEEEEcCCeeecc
Q 019523 102 IGEGIPVATGAAFTSKYRREVLKEADC-DHVTLAFFGDGTCN----NGQFFECLNMAALW---KLPIVFVVENNLWAIGM 173 (339)
Q Consensus 102 lG~~~p~AiG~a~A~k~~~~~~~~~~~-~~~vv~~~GDG~~~----~g~~~eal~~A~~~---~Lpvi~vv~NN~~~i~~ 173 (339)
.|...|.+-|...|....... ...+| .+.+++++-||=.+ .+...|++..|... +.++++|=.-+++ +
T Consensus 150 ~GG~TPL~~aL~~a~ev~~r~-~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~-~-- 225 (261)
T COG1240 150 TGGKTPLADALRQAYEVLARE-KRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSE-V-- 225 (261)
T ss_pred CCCCCchHHHHHHHHHHHHHh-hccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCcc-c--
Confidence 455566666666654332211 11133 46788999999765 23346667666644 3444433111221 1
Q ss_pred cccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 174 SHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 174 ~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
..--..++|..+|.++++.+......+..
T Consensus 226 ------~~g~~~~iA~~~Gg~~~~L~~l~~~~i~~ 254 (261)
T COG1240 226 ------RLGLAEEIARASGGEYYHLDDLSDDSIVS 254 (261)
T ss_pred ------cccHHHHHHHHhCCeEEecccccchHHHH
Confidence 11223467889999999998877555554
No 255
>PRK13683 hypothetical protein; Provisional
Probab=55.07 E-value=18 Score=27.53 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=29.3
Q ss_pred CCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCC
Q 019523 191 FGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 235 (339)
Q Consensus 191 ~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~g 235 (339)
+-+.+-+=+-.|..++|..+..|+ +.+.|.+||+.|.+..+
T Consensus 13 ~P~SVQRKe~edA~alYq~I~~am----~sg~P~llELtCek~~~ 53 (87)
T PRK13683 13 MPISVQRKEAEDAEALYQQIRQAM----RSGNPRLLELTCEKVED 53 (87)
T ss_pred cceEEEeccHHHHHHHHHHHHHHH----hcCCCcEEEEEecCcCC
Confidence 334444556677888888777766 45789999999987544
No 256
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=54.85 E-value=65 Score=26.36 Aligned_cols=71 Identities=18% Similarity=0.123 Sum_probs=42.6
Q ss_pred CcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHH
Q 019523 129 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 208 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~ 208 (339)
.++.|+++.||.-. +...+.+..+...+.++.+|........ ...+..+++.-|..++.++. +..++.+
T Consensus 99 ~~~~iv~iTDG~~~-~~~~~~~~~~~~~~i~i~~v~~~~~~~~---------~~~l~~la~~tgG~~~~~~~-~~~~l~~ 167 (172)
T PF13519_consen 99 RRRAIVLITDGEDN-SSDIEAAKALKQQGITIYTVGIGSDSDA---------NEFLQRLAEATGGRYFHVDN-DPEDLDD 167 (172)
T ss_dssp EEEEEEEEES-TTH-CHHHHHHHHHHCTTEEEEEEEES-TT-E---------HHHHHHHHHHTEEEEEEE-S-SSHHHHH
T ss_pred CceEEEEecCCCCC-cchhHHHHHHHHcCCeEEEEEECCCccH---------HHHHHHHHHhcCCEEEEecC-CHHHHHH
Confidence 56889999999766 3346777777777777666644433111 23566777777888888842 2234444
Q ss_pred HH
Q 019523 209 VA 210 (339)
Q Consensus 209 a~ 210 (339)
++
T Consensus 168 ~~ 169 (172)
T PF13519_consen 168 AF 169 (172)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 257
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=54.17 E-value=1.2e+02 Score=31.60 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=58.6
Q ss_pred cccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccch---------HHHHHHHH---HhCCCCEEEEEEcCCe
Q 019523 102 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ---------FFECLNMA---ALWKLPIVFVVENNLW 169 (339)
Q Consensus 102 lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~---------~~eal~~A---~~~~Lpvi~vv~NN~~ 169 (339)
-|.+.|.+-|...|.+...... .....++|+++-||-.+.+. ..+++..| ...++++++|-.-+.
T Consensus 472 ~gGgTpL~~gL~~A~~~l~~~~--~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~- 548 (584)
T PRK13406 472 GGGGTPLAAGLDAAAALALQVR--RKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPR- 548 (584)
T ss_pred CCCCChHHHHHHHHHHHHHHhc--cCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCC-
Confidence 3566777888777765432110 01235788999999877531 13333333 345666555422211
Q ss_pred eecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHH
Q 019523 170 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKE 212 (339)
Q Consensus 170 ~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~ 212 (339)
......++|+..|..++.+..-+...+..+++.
T Consensus 549 ----------~~~~~~~LA~~~gg~y~~l~~~~a~~~~~~v~~ 581 (584)
T PRK13406 549 ----------PQPQARALAEAMGARYLPLPRADAGRLSQAVRA 581 (584)
T ss_pred ----------CcHHHHHHHHhcCCeEEECCCCCHHHHHHHHHh
Confidence 123456789999999999988887776654443
No 258
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=53.60 E-value=31 Score=26.23 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=33.7
Q ss_pred HHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhcc
Q 019523 264 KYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENV 310 (339)
Q Consensus 264 ~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v 310 (339)
..|...|++|.+|+.+|.+.-... +.......+.+++.+.++
T Consensus 9 e~l~~~~lFt~~EI~~IvkkR~~f-----Ey~L~rr~~~~~Dfl~YI 50 (83)
T PF08640_consen 9 EDLERKGLFTKEEIREIVKKRRDF-----EYKLQRRGKKKSDFLRYI 50 (83)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHH-----HHHHHcCCCCHHHHHHHH
Confidence 346788999999999998877665 777778888888887776
No 259
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.85 E-value=32 Score=29.50 Aligned_cols=48 Identities=29% Similarity=0.427 Sum_probs=36.0
Q ss_pred cChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 019523 180 SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 230 (339)
Q Consensus 180 ~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t 230 (339)
-+...+-.|+|||..++.+++.+-+.+.+.++..++ .-+||..|+..+
T Consensus 19 iTTHV~LtARAfGA~gil~~~e~De~v~esv~dVv~---rwGG~F~v~~~~ 66 (179)
T COG1303 19 ITTHVALTARAFGADGILLDGEEDEKVVESVEDVVE---RWGGPFFVKFGV 66 (179)
T ss_pred chhhhhhhhHhhCCceEEEcCcccHHHHHHHHHHHH---hcCCCEEEEEcc
Confidence 355677789999999999999865667666666554 468898887643
No 260
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=51.10 E-value=23 Score=21.48 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHcCcccHHHHHHHHHHH
Q 019523 257 DPITALKKYLIESSLASEAELKAIEKKI 284 (339)
Q Consensus 257 dPl~~~~~~L~~~g~~~~~~~~~i~~~~ 284 (339)
+++..++. |.+.|.+|++|.++.++++
T Consensus 3 ~~L~~L~~-l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 3 DRLEKLKE-LYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHH-HHHcCCCCHHHHHHHHHHH
Confidence 34555644 5688999999999887765
No 261
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=50.68 E-value=89 Score=29.97 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=20.3
Q ss_pred CCcEEEe-cCCCHHHHHHHHHHHHHHHHcCCCCEEEE
Q 019523 192 GMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVE 227 (339)
Q Consensus 192 G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~gP~lIe 227 (339)
.+|+.+| .-.|+.+....++.++ ..++|++|-
T Consensus 139 ~iPgl~V~~Psd~~d~~~~l~~a~----~~~~Pv~ir 171 (327)
T CHL00144 139 SVPGLQIVACSTPYNAKGLLKSAI----RSNNPVIFF 171 (327)
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHH----hCCCcEEEE
Confidence 5666655 3457777666554444 467999884
No 262
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=49.02 E-value=1.7e+02 Score=24.89 Aligned_cols=69 Identities=9% Similarity=0.071 Sum_probs=42.0
Q ss_pred cEEEEEeCCCCcccch--H----HHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCH
Q 019523 130 HVTLAFFGDGTCNNGQ--F----FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV 203 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~--~----~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~ 203 (339)
+.+++++.||..+.|. . .+....+...+.+++.|-.... . ....-+.++|+.-|..++.++..+-
T Consensus 99 ~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~-~--------~~~~~l~~iA~~tgG~~~~~~d~~~ 169 (178)
T cd01451 99 RPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGR-P--------VRRGLAKDLARALGGQYVRLPDLSA 169 (178)
T ss_pred ceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCC-c--------cCccHHHHHHHHcCCeEEEcCcCCH
Confidence 5789999999876442 1 2233445567777755421110 0 0122456788888999999987775
Q ss_pred HHHH
Q 019523 204 LKVR 207 (339)
Q Consensus 204 ~~v~ 207 (339)
.++.
T Consensus 170 ~~~~ 173 (178)
T cd01451 170 DAIA 173 (178)
T ss_pred HHHH
Confidence 5443
No 263
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.70 E-value=65 Score=26.44 Aligned_cols=47 Identities=28% Similarity=0.365 Sum_probs=28.9
Q ss_pred cChhhhhhcccCCCcEE--EecCC--CHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 019523 180 SDPQIYKKGPAFGMPGF--HVDGM--DVLKVREVAKEAIERARRGEGPTLVECET 230 (339)
Q Consensus 180 ~~~d~~~~a~a~G~~~~--~Vdg~--d~~~v~~a~~~A~~~ar~~~gP~lIev~t 230 (339)
.+......++..|+.+. .|-+. ...+| +++++|++. ..||+|-.|++
T Consensus 46 ~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV-~~f~~Al~e---aegPVlayCrs 96 (130)
T COG3453 46 GFAAIAAAAEAAGLTYTHIPVTGGGITEADV-EAFQRALDE---AEGPVLAYCRS 96 (130)
T ss_pred ChHHHHHHHHhcCCceEEeecCCCCCCHHHH-HHHHHHHHH---hCCCEEeeecC
Confidence 34455667777787655 44443 33333 356666664 58999998853
No 264
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=46.49 E-value=48 Score=28.83 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=44.3
Q ss_pred HHHHHhCCCCEEEEEEcCC-eeecc------cccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHH
Q 019523 150 LNMAALWKLPIVFVVENNL-WAIGM------SHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERAR 218 (339)
Q Consensus 150 l~~A~~~~Lpvi~vv~NN~-~~i~~------~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar 218 (339)
..+..++..++++++.||- |.-.. ..+++.....+.+.-+.++.+++.++|.|..+=+....+|++...
T Consensus 107 ~~~i~~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~~~v~i~~~~y~eR~~~~~~aV~ell 182 (187)
T COG3172 107 QALIAEYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENNIPFVVIEGEDYLERYLQAVEAVEELL 182 (187)
T ss_pred HHHHhhcccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhCCcEEEEcCCCHHHHHHHHHHHHHHHH
Confidence 3456678888999999994 32211 112222223455566778999999999888776666666666543
No 265
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=45.88 E-value=81 Score=27.96 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=35.2
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHH-hCCCC--EEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCC
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAA-LWKLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMD 202 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~-~~~Lp--vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d 202 (339)
+++|.+.|+|+..+. +-.+. .-+++ |++||.|+. . ....++|+..|+|.+.++..+
T Consensus 3 ki~vl~sg~gs~~~~-----ll~~~~~~~~~~~I~~vvs~~~-~-----------~~~~~~a~~~gIp~~~~~~~~ 61 (200)
T PRK05647 3 RIVVLASGNGSNLQA-----IIDACAAGQLPAEIVAVISDRP-D-----------AYGLERAEAAGIPTFVLDHKD 61 (200)
T ss_pred eEEEEEcCCChhHHH-----HHHHHHcCCCCcEEEEEEecCc-c-----------chHHHHHHHcCCCEEEECccc
Confidence 478999999877553 33332 33344 666666764 0 123567888999999876443
No 266
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=45.80 E-value=1.7e+02 Score=25.93 Aligned_cols=103 Identities=21% Similarity=0.230 Sum_probs=64.8
Q ss_pred HHHHHHHHh-CCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEE
Q 019523 147 FECLNMAAL-WKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTL 225 (339)
Q Consensus 147 ~eal~~A~~-~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~l 225 (339)
.+.+-.+.. ...|+|.++.++. |.+.+.+...|+.++.|++-|+.-++..+.-|..+-.....
T Consensus 66 ~e~~~~~~~~~~~piv~lt~~s~-------------p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~~~~~--- 129 (194)
T COG3707 66 IEALLLASENVARPIVALTAYSD-------------PALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFEERRA--- 129 (194)
T ss_pred HHHHHHhhcCCCCCEEEEEccCC-------------hHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHHHHHH---
Confidence 555555555 4555666665544 56777888899999999999998888776655544322110
Q ss_pred EEEEEeeCCCCCCCCCCCCCCHHHHHH----HhhCChHHHHHHHHHHcCcccHHH-HHHHHHHHH
Q 019523 226 VECETYRFRGHSLADPDELRDPAEKAR----YAARDPITALKKYLIESSLASEAE-LKAIEKKID 285 (339)
Q Consensus 226 Iev~t~r~~gh~~~D~~~yr~~~e~~~----~~~~dPl~~~~~~L~~~g~~~~~~-~~~i~~~~~ 285 (339)
-..|.+. ...+.-+.+.+-.|.....++|+| .+.+++.+-
T Consensus 130 --------------------L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~AM 174 (194)
T COG3707 130 --------------------LRRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRTAM 174 (194)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 0122222 234567888888888777788666 444555443
No 267
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=44.15 E-value=36 Score=35.25 Aligned_cols=52 Identities=23% Similarity=0.161 Sum_probs=34.8
Q ss_pred HHHHHHHHHhC--CCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHH
Q 019523 146 FFECLNMAALW--KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 206 (339)
Q Consensus 146 ~~eal~~A~~~--~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v 206 (339)
...+|.-+.++ ++|+++++.|.. | .. .. .-.+.+++||++.+.||.+.|.+.
T Consensus 404 l~~aLED~~RhGqKlPL~VlvDnGs----T--eE--Di-pA~~~~k~Ygi~ivVVDHH~Pde~ 457 (715)
T COG1107 404 LNFALEDAHRHGQKLPLLVLVDNGS----T--EE--DI-PAIKQLKAYGIDIVVVDHHYPDEA 457 (715)
T ss_pred HHHHHHHHHhcCCccceEEEEcCCC----c--cc--cc-HHHHHHHhcCCCEEEEcCCCCcch
Confidence 34566666765 688887777654 1 11 11 234678899999999999877654
No 268
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=44.06 E-value=3.1e+02 Score=28.82 Aligned_cols=166 Identities=21% Similarity=0.256 Sum_probs=86.3
Q ss_pred CCCChHHHHHHHHHccCCCCeeeeCCCCcccccccCCCHHHHHHHhhCCCCCCCcCCCCccccccCCCcccccccccccc
Q 019523 26 LYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEG 105 (339)
Q Consensus 26 ~~~G~Ea~~~~~~~~l~~~D~i~~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~g~~G~~h~~~~~~~~~~~~g~lG~~ 105 (339)
+..|+||+.-+ +|..+=-+.+.|| |-+..+++..|.+..+ .. |..++ ++... - -..
T Consensus 15 ~llGneAi~r~---Ale~gV~~~aGYp--------GtPstei~e~la~~~~-~l----~~vy~---e~s~N---E--kvA 70 (640)
T COG4231 15 LLLGNEAIARG---ALEAGVGVAAGYP--------GTPSTELIETLAKAKK-IL----GDVYF---EWSLN---E--KVA 70 (640)
T ss_pred HhccHHHHHHH---HHhcCceEEeccC--------CCCcHHHHHHHHHhhh-hc----CcEEE---Eeccc---H--HHH
Confidence 35899999753 4455544667787 4556667766655432 11 11111 11110 0 113
Q ss_pred hHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcc-cchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhh
Q 019523 106 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 184 (339)
Q Consensus 106 ~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~-~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~ 184 (339)
+-.|.|++++ +.+.++.+=-=+++ -++.+-.++++...+ -+|+|+-++- ++..++..| .+..|
T Consensus 71 ~e~a~GA~~~-------------G~ral~~mKhVGlNvAsDpl~s~ay~Gv~G-Glviv~aDDp-g~~SSqneq-dsr~y 134 (640)
T COG4231 71 LETAAGASYA-------------GVRALVTMKHVGLNVASDPLMSLAYAGVTG-GLVIVVADDP-GMHSSQNEQ-DSRAY 134 (640)
T ss_pred HHHHHHhhhc-------------CceeeEEecccccccchhhhhhhhhcCccc-cEEEEEccCC-Ccccccchh-HhHHH
Confidence 4556666665 22222222211122 223344444544222 2666665554 343332222 12222
Q ss_pred hhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCC
Q 019523 185 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 238 (339)
Q Consensus 185 ~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~ 238 (339)
++...+|++ +-.|+.+.++.++.|++..+..+-|+++-+.|. -.|+.
T Consensus 135 ---~~~a~iPvL--eP~d~Qea~d~~~~afelSe~~~~pVilr~ttr--~~h~~ 181 (640)
T COG4231 135 ---GKFALIPVL--EPSDPQEAYDYVKYAFELSEKSGLPVILRTTTR--VSHSR 181 (640)
T ss_pred ---HHhcCceee--cCCChHHHHHHHHHHHHHHHHhCCCEEEEEEee--eeccc
Confidence 233345544 566899999999999999999999999977664 34443
No 269
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=41.67 E-value=1.6e+02 Score=30.70 Aligned_cols=94 Identities=15% Similarity=0.179 Sum_probs=53.4
Q ss_pred CcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCe-eecccccccccChhhhhhcccCCCcEEEe-cCCCHHHH
Q 019523 129 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKV 206 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v 206 (339)
-++|+++. ..|.|=.+-|-+.=.+..+|||+|+++-.+. +...++.. ...|++-+ -.+|.+.| --.|..++
T Consensus 382 ~kPvvaIY--STFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~--G~fDls~l---~~iPnmvi~aP~de~el 454 (627)
T COG1154 382 MKPVVAIY--STFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQ--GLFDLSFL---RCIPNMVIMAPRDEEEL 454 (627)
T ss_pred CCCEEEEe--cHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccc--cHHHHHHH---hcCCCcEEecCCCHHHH
Confidence 34666665 2344444555666678999999999997762 22222221 22333322 24677766 44565555
Q ss_pred HHHHHHHHHHHHcCC-CCEEEEEEEeeCCC
Q 019523 207 REVAKEAIERARRGE-GPTLVECETYRFRG 235 (339)
Q Consensus 207 ~~a~~~A~~~ar~~~-gP~lIev~t~r~~g 235 (339)
.. .+..+...+ +|+.|-. +|+.+
T Consensus 455 ~~----ml~ta~~~~~gP~AiRy--Prg~~ 478 (627)
T COG1154 455 RQ----MLYTALAQDDGPVAIRY--PRGNG 478 (627)
T ss_pred HH----HHHHHHhcCCCCeEEEe--cCCCC
Confidence 55 555555555 8998844 45543
No 270
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=40.51 E-value=56 Score=20.61 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHH
Q 019523 257 DPITALKKYLIESSLASEAELKAIEKKIDEVVED 290 (339)
Q Consensus 257 dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 290 (339)
||+..|-+.+-...++|.++-.++-+++++-.+.
T Consensus 2 D~l~~Yl~ei~~~~LLt~eeE~~LA~~i~~g~~~ 35 (37)
T PF00140_consen 2 DSLRLYLKEIGRYPLLTAEEEIELARRIRKGDEA 35 (37)
T ss_dssp HHHHHHHHHHHHS-EETTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHh
Confidence 6888999999999999988777777766665433
No 271
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=40.49 E-value=69 Score=30.42 Aligned_cols=56 Identities=25% Similarity=0.327 Sum_probs=37.7
Q ss_pred EeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHH
Q 019523 135 FFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVL 204 (339)
Q Consensus 135 ~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~ 204 (339)
+.|+...- | +.|+|+.....+ .-+++|.||. . .+..++.+.++.+|+.. |..+++.
T Consensus 34 W~g~~~ip-G-s~e~l~~L~~~g-K~i~fvTNNS-t--------ksr~~y~kK~~~lG~~~--v~e~~i~ 89 (306)
T KOG2882|consen 34 WLGEKPIP-G-SPEALNLLKSLG-KQIIFVTNNS-T--------KSREQYMKKFAKLGFNS--VKEENIF 89 (306)
T ss_pred eecCCCCC-C-hHHHHHHHHHcC-CcEEEEeCCC-c--------chHHHHHHHHHHhCccc--cCccccc
Confidence 33555443 3 389999999988 7788888986 1 13356778888888765 4445443
No 272
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=40.10 E-value=69 Score=33.93 Aligned_cols=73 Identities=25% Similarity=0.291 Sum_probs=42.9
Q ss_pred EEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHH
Q 019523 133 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAK 211 (339)
Q Consensus 133 v~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~ 211 (339)
++=--||-... ..|++.++..|++||||=- +++. |..+++| +..+ ++.++++
T Consensus 162 vVPGTpgPitt--~~EA~eF~k~yG~PvI~KA-----AyGG------------------GGRGmRvVr~~e--~vee~f~ 214 (1176)
T KOG0369|consen 162 VVPGTPGPITT--VEEALEFVKEYGLPVIIKA-----AYGG------------------GGRGMRVVRSGE--DVEEAFQ 214 (1176)
T ss_pred ccCCCCCCccc--HHHHHHHHHhcCCcEEEee-----cccC------------------CCcceEEeechh--hHHHHHH
Confidence 33344555544 4899999999999988642 1111 3344433 3333 6667777
Q ss_pred HHHHHHHc--CCCCEEEEEEEee
Q 019523 212 EAIERARR--GEGPTLVECETYR 232 (339)
Q Consensus 212 ~A~~~ar~--~~gP~lIev~t~r 232 (339)
+|-..|++ ++|..|||=...|
T Consensus 215 Ra~SEA~aaFGnG~~FvEkF~ek 237 (1176)
T KOG0369|consen 215 RAYSEALAAFGNGTLFVEKFLEK 237 (1176)
T ss_pred HHHHHHHHhcCCceeeHHhhhcC
Confidence 77666655 5666666544433
No 273
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=37.95 E-value=1.7e+02 Score=26.95 Aligned_cols=76 Identities=18% Similarity=0.297 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhCC-CC-EE-EEEE-cC-Ceeeccccccc---ccChhhhhhcccCCCcEEEecCC-CHHHHHHHHHHHHH
Q 019523 145 QFFECLNMAALWK-LP-IV-FVVE-NN-LWAIGMSHLRA---TSDPQIYKKGPAFGMPGFHVDGM-DVLKVREVAKEAIE 215 (339)
Q Consensus 145 ~~~eal~~A~~~~-Lp-vi-~vv~-NN-~~~i~~~~~~~---~~~~d~~~~a~a~G~~~~~Vdg~-d~~~v~~a~~~A~~ 215 (339)
.+.|||.+|..-- .| || =+|+ || .|..|...... ..-+.+.....-.|..++.|++. |+.++ ++
T Consensus 157 r~~eAlaLAsKV~~~pgivAElC~SDDP~YtTGYVA~~~~gY~RI~~mK~~G~~~GGRvffv~~~~~~~~~-------i~ 229 (242)
T PRK01322 157 RTVDALALASKVIAHPGVIAELCWSDDPDYTTGYVATKKLGYHRITNLKEEGTPYGGRIFFVDDSIDLEEL-------IS 229 (242)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCccCHHHH-------HH
Confidence 5689999998544 67 44 3444 44 55444432221 13445666667789999999986 54443 33
Q ss_pred HHHcCCCCEEEEEE
Q 019523 216 RARRGEGPTLVECE 229 (339)
Q Consensus 216 ~ar~~~gP~lIev~ 229 (339)
+. .+.|+||...
T Consensus 230 yL--E~~pVLI~~~ 241 (242)
T PRK01322 230 YL--ENKPVLIVYE 241 (242)
T ss_pred HH--hcCcEEEEec
Confidence 33 3679999763
No 274
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=37.81 E-value=1.5e+02 Score=27.13 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=44.9
Q ss_pred hHHHHHHHHHh-CCCC-EE-EEEE-cC-Ceeeccccccc---ccChhhhhhcccCCCcEEEecC-CCHHHHHHHHHHHHH
Q 019523 145 QFFECLNMAAL-WKLP-IV-FVVE-NN-LWAIGMSHLRA---TSDPQIYKKGPAFGMPGFHVDG-MDVLKVREVAKEAIE 215 (339)
Q Consensus 145 ~~~eal~~A~~-~~Lp-vi-~vv~-NN-~~~i~~~~~~~---~~~~d~~~~a~a~G~~~~~Vdg-~d~~~v~~a~~~A~~ 215 (339)
.+.|||.+|.. ...| || =+|+ || .|..|...... ..-+.+.....-.|..++.|++ .|+.++++
T Consensus 150 r~~eAlaLAsKV~~~pgvvAElC~SDDP~YtTGYVA~~~~gY~RI~~lK~~G~~~GGRvffv~~~~~l~~~i~------- 222 (232)
T TIGR01204 150 RTVEALALAFKVLFCPAVVAELCWSDDPDYVTGYVSGKEIGYVRITPLKEKGDELGGRVFFVSRKNELSEYIH------- 222 (232)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCCCCHHHHHH-------
Confidence 56899999974 5588 44 3444 44 55444432221 1334555566678999999998 46555433
Q ss_pred HHHcCCCCEEEE
Q 019523 216 RARRGEGPTLVE 227 (339)
Q Consensus 216 ~ar~~~gP~lIe 227 (339)
+. .+.|+||+
T Consensus 223 yL--E~~pvLI~ 232 (232)
T TIGR01204 223 CL--EQKPILIE 232 (232)
T ss_pred HH--hcCcEEeC
Confidence 32 25798874
No 275
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=36.90 E-value=2.1e+02 Score=25.65 Aligned_cols=40 Identities=23% Similarity=0.175 Sum_probs=27.2
Q ss_pred HHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCC
Q 019523 150 LNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 201 (339)
Q Consensus 150 l~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~ 201 (339)
...|...++|+++++-++. ++.-....+.+|..++.+++.
T Consensus 66 A~~a~~~g~~~~v~~p~~~------------~~~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 66 AAAAARLGLKCTIVMPEGA------------SPEKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred HHHHHHcCCCEEEEECCCC------------CHHHHHHHHHCCCEEEEECCC
Confidence 3345578999888877664 122335567789999988875
No 276
>PRK10490 sensor protein KdpD; Provisional
Probab=36.08 E-value=1.6e+02 Score=32.41 Aligned_cols=93 Identities=12% Similarity=0.005 Sum_probs=53.1
Q ss_pred CcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEE-EcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHH
Q 019523 129 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVV-ENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 207 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~ 207 (339)
+++.||+.|. ..++--.--+..+|.+.+.|+..|. ....... ..........+..++|+.+|.....+.|.|+.+
T Consensus 251 eriLV~v~~~-~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~-~~~~~~~~l~~~~~lA~~lGa~~~~~~~~dva~-- 326 (895)
T PRK10490 251 DAILLCIGHN-TGSEKLVRTAARLAARLGSVWHAVYVETPRLHR-LPEKKRRAILSALRLAQELGAETATLSDPAEEK-- 326 (895)
T ss_pred CeEEEEECCC-cchHHHHHHHHHHHHhcCCCEEEEEEecCCcCc-CCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHH--
Confidence 4556666666 4445555677789999999944333 3322111 111111112233468999999999999988553
Q ss_pred HHHHHHHHHHHcCCCCEEEEEE
Q 019523 208 EVAKEAIERARRGEGPTLVECE 229 (339)
Q Consensus 208 ~a~~~A~~~ar~~~gP~lIev~ 229 (339)
.-+++|+..+-..+|--+
T Consensus 327 ----~i~~~A~~~~vt~IViG~ 344 (895)
T PRK10490 327 ----AVLRYAREHNLGKIIIGR 344 (895)
T ss_pred ----HHHHHHHHhCCCEEEECC
Confidence 244566655544444333
No 277
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=36.00 E-value=2.9e+02 Score=24.44 Aligned_cols=62 Identities=16% Similarity=0.051 Sum_probs=39.5
Q ss_pred CCcEEEEEeCCCCcc-cc-hHHH-HHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecC
Q 019523 128 CDHVTLAFFGDGTCN-NG-QFFE-CLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 200 (339)
Q Consensus 128 ~~~~vv~~~GDG~~~-~g-~~~e-al~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg 200 (339)
.+.++|.++-||... .+ .-.+ +..+|...++++-.| ++|.. ....+..+++.-|..++++..
T Consensus 110 a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytI------giG~~-----d~~~l~~iA~~tgG~~F~A~d 174 (191)
T cd01455 110 FDEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVI------FIGSL-----SDEADQLQRELPAGKAFVCMD 174 (191)
T ss_pred CCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEE------EecCC-----CHHHHHHHHhCCCCcEEEeCC
Confidence 356788999999954 33 2234 357788888886555 33332 123355667777888998843
No 278
>PLN02828 formyltetrahydrofolate deformylase
Probab=34.80 E-value=2.8e+02 Score=25.90 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=40.2
Q ss_pred CCCcEEEEEeCCCCcccchHHHHHHHHHhCC-CC--EEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEec
Q 019523 127 DCDHVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD 199 (339)
Q Consensus 127 ~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~-Lp--vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vd 199 (339)
.+.+++|.+.|-|+. +++|-.+.+.+ || |+.|+.|+. . .+..+..++|+.+|+|.+.+.
T Consensus 69 ~~~riavlvSg~g~n-----l~~ll~~~~~g~l~~eI~~ViSn~~-~--------~~~a~~~~~A~~~gIP~~~~~ 130 (268)
T PLN02828 69 PKYKIAVLASKQDHC-----LIDLLHRWQDGRLPVDITCVISNHE-R--------GPNTHVMRFLERHGIPYHYLP 130 (268)
T ss_pred CCcEEEEEEcCCChh-----HHHHHHhhhcCCCCceEEEEEeCCC-C--------CCCchHHHHHHHcCCCEEEeC
Confidence 345788888888865 55566655433 44 888888874 1 022367788999999998664
No 279
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=34.39 E-value=2.1e+02 Score=30.05 Aligned_cols=88 Identities=18% Similarity=0.117 Sum_probs=44.1
Q ss_pred ccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccc-----hHHHHHHHHH---hCCCCEEEEEEcCCeeeccc
Q 019523 103 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG-----QFFECLNMAA---LWKLPIVFVVENNLWAIGMS 174 (339)
Q Consensus 103 G~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g-----~~~eal~~A~---~~~Lpvi~vv~NN~~~i~~~ 174 (339)
|.+.|.+-|...|.+............+.+|+++.||-.+.+ ..-+++..|. ..++++++|-..++
T Consensus 538 gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~------ 611 (633)
T TIGR02442 538 GGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESG------ 611 (633)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCC------
Confidence 445566666666654432100011235678899999987542 1233333333 34555544422111
Q ss_pred ccccccChhhhhhcccCCCcEEEec
Q 019523 175 HLRATSDPQIYKKGPAFGMPGFHVD 199 (339)
Q Consensus 175 ~~~~~~~~d~~~~a~a~G~~~~~Vd 199 (339)
........++|+..|..++.++
T Consensus 612 ---~~~~~~~~~lA~~~gg~y~~l~ 633 (633)
T TIGR02442 612 ---FVRLGLAEDLARALGGEYVRLD 633 (633)
T ss_pred ---CcchhHHHHHHHhhCCeEEecC
Confidence 0112235567777787777653
No 280
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=34.22 E-value=2.4e+02 Score=26.57 Aligned_cols=52 Identities=23% Similarity=0.151 Sum_probs=34.5
Q ss_pred CcEEEEEeCCCCcccchHHHHHHHHHhCC-CC--EEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEec
Q 019523 129 DHVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD 199 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~g~~~eal~~A~~~~-Lp--vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vd 199 (339)
.+++|...|- |..+++|--+...+ ++ ++.|+.|+. +...+|+.+|+|.+.++
T Consensus 90 ~ri~vl~Sg~-----g~nl~al~~~~~~~~~~~~i~~visn~~--------------~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 90 PKVLIMVSKF-----DHCLNDLLYRWRIGELPMDIVGVVSNHP--------------DLEPLAAWHGIPFHHFP 144 (286)
T ss_pred ceEEEEEcCC-----cccHHHHHHHHHcCCCCcEEEEEEECCc--------------cHHHHHHHhCCCEEEeC
Confidence 3555666663 33477787776544 44 777777764 35556889999999874
No 281
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=34.02 E-value=2.1e+02 Score=29.11 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=46.3
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcE-EEecCCCHHHHHH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPG-FHVDGMDVLKVRE 208 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~-~~Vdg~d~~~v~~ 208 (339)
.+++|++|=|+=.--....-|...+....++++|..+|- .-.- +..-+.++..++.-+. +.+ ..+-.+
T Consensus 359 g~li~VfG~gGDrD~~kr~~mg~ia~~~ad~vivt~dnp-R~ed------p~~i~~~i~~g~~~~~~~~~----~~dr~~ 427 (475)
T COG0769 359 GRLIVVFGCGGDRDKSKRPDMGAIAEQLADIVIVTSDNP-RSED------PAVILADILAGIEAPEKYEI----IEDREE 427 (475)
T ss_pred CcEEEEECccCCCCcccccchHHHHHhcCCcEEEcCCCC-CCcC------HHHHHHHHHhccCCccceec----chhHHH
Confidence 346777665553311123345555566667888888774 1100 1111223333322221 111 124456
Q ss_pred HHHHHHHHHHcCCCCEEEEEEEeeCCCCCC
Q 019523 209 VAKEAIERARRGEGPTLVECETYRFRGHSL 238 (339)
Q Consensus 209 a~~~A~~~ar~~~gP~lIev~t~r~~gh~~ 238 (339)
+++.|++.+. .+++|+.. +.||..
T Consensus 428 AI~~ai~~a~--~~D~vlia----gkGhe~ 451 (475)
T COG0769 428 AIRKALDLAK--EGDVVLIA----GKGHET 451 (475)
T ss_pred HHHHHHHhhc--cCCEEEEe----eccchh
Confidence 7788888765 66766655 777754
No 282
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=33.61 E-value=1.7e+02 Score=25.76 Aligned_cols=54 Identities=19% Similarity=0.386 Sum_probs=32.5
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCC--EEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEec
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD 199 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp--vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vd 199 (339)
+++|.+.|.|+.... -++.....+++ +..||.|+. . -....+|+.+|++.+.++
T Consensus 2 riail~sg~gs~~~~----ll~~~~~~~l~~~I~~vi~~~~-~-----------~~~~~~A~~~gip~~~~~ 57 (190)
T TIGR00639 2 RIVVLISGNGSNLQA----IIDACKEGKIPASVVLVISNKP-D-----------AYGLERAAQAGIPTFVLS 57 (190)
T ss_pred eEEEEEcCCChhHHH----HHHHHHcCCCCceEEEEEECCc-c-----------chHHHHHHHcCCCEEEEC
Confidence 467888888876543 23333344554 556666653 0 122466788899988765
No 283
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=33.54 E-value=2.8e+02 Score=30.54 Aligned_cols=88 Identities=9% Similarity=-0.042 Sum_probs=57.8
Q ss_pred CCCcccchHHHHHHHHHhCCCCEEEEEEcCCe-eecccccccccChhhhhhcccCCCcEEEe-cCCCHHHHHHHHHHHHH
Q 019523 138 DGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIE 215 (339)
Q Consensus 138 DG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~ 215 (339)
=..|...-.++-+..++-.++++++|...-+. .++..- ....++.+.+-+-.+|..+| +-.|..++...++.+++
T Consensus 597 ya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG---~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~ 673 (889)
T TIGR03186 597 YSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEG---LQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMR 673 (889)
T ss_pred hHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCc---ccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHH
Confidence 34454445578899999999999999887763 233211 12223444444556777755 77788888888888888
Q ss_pred HHHcC--CCCEEEEE
Q 019523 216 RARRG--EGPTLVEC 228 (339)
Q Consensus 216 ~ar~~--~gP~lIev 228 (339)
++... ++|+.|-+
T Consensus 674 rm~~~~~~gp~YlRl 688 (889)
T TIGR03186 674 EMLERQRDEFYYLTV 688 (889)
T ss_pred HHHhcCCCceEEEEe
Confidence 66554 47888755
No 284
>PLN03013 cysteine synthase
Probab=33.35 E-value=1.5e+02 Score=29.62 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=22.9
Q ss_pred HHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCC
Q 019523 152 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 201 (339)
Q Consensus 152 ~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~ 201 (339)
.|..+++|+++|+-++- .+.-....++||..++.|++.
T Consensus 193 ~a~~~G~~~~VvvP~~~------------s~~K~~~ira~GAeVi~v~~~ 230 (429)
T PLN03013 193 IAASRGYRLILTMPASM------------SMERRVLLKAFGAELVLTDPA 230 (429)
T ss_pred HHHHcCCCEEEEECCCC------------cHHHHHHHHHcCCEEEEECCC
Confidence 45678999888877653 112234445666666666543
No 285
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=33.09 E-value=1.9e+02 Score=26.90 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=24.6
Q ss_pred HHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCC
Q 019523 152 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 201 (339)
Q Consensus 152 ~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~ 201 (339)
.|..+++|+++++-.+- ++.-....+.||...+.++++
T Consensus 75 ~a~~~Gl~~~i~vp~~~------------~~~k~~~~~~~GA~v~~~~~~ 112 (298)
T TIGR01139 75 VAAARGYKLILTMPETM------------SIERRKLLKAYGAELVLTPGA 112 (298)
T ss_pred HHHHcCCeEEEEeCCcc------------CHHHHHHHHHcCCEEEEECCC
Confidence 45678999777766542 011234456788888888765
No 286
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=32.97 E-value=90 Score=27.49 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHH
Q 019523 259 ITALKKYLIESSLASEAELKAIEKKIDEV 287 (339)
Q Consensus 259 l~~~~~~L~~~g~~~~~~~~~i~~~~~~~ 287 (339)
+..++..|+++|+++.++++++.+.+...
T Consensus 9 ~~al~~ll~ekg~~~~~~~~~~~~~~~~~ 37 (188)
T PF02979_consen 9 VRALESLLIEKGLITPAEVDRIIETYESR 37 (188)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 35688899999999999999888777665
No 287
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=32.80 E-value=1e+02 Score=26.02 Aligned_cols=40 Identities=18% Similarity=0.361 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhh
Q 019523 258 PITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADE 297 (339)
Q Consensus 258 Pl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~ 297 (339)
-|...++++.+.|-+|++|++.+.+-++..++++.+....
T Consensus 19 ~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 19 ALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999998888776554
No 288
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=32.59 E-value=95 Score=24.71 Aligned_cols=40 Identities=8% Similarity=0.031 Sum_probs=29.3
Q ss_pred CCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC
Q 019523 127 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 168 (339)
Q Consensus 127 ~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~ 168 (339)
+++..++++.--|...+- .+++..|...+.|+|.|..+..
T Consensus 46 ~~~dl~I~iS~SG~t~~~--~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTKET--VAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCChHH--HHHHHHHHHcCCeEEEEECCCC
Confidence 345677778777776655 8888888888888877766543
No 289
>PF05209 MinC_N: Septum formation inhibitor MinC, N-terminal domain; InterPro: IPR007874 In Escherichia coli FtsZ (P0A9A6 from SWISSPROT) assembles into a Z ring at midcell. Its assembly at polar sites is prevented by the min system. MinC P18196 from SWISSPROT, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with the MinDE proteins. MinC is an oligomer, probably a dimer []. The C-terminal half of MinC is the most conserved and interacts with MinD. The N-terminal half is thought to interact with FtsZ. MinC rapidly oscillates between the poles of the cell to destabilise FtsZ filaments that have formed before they mature into polar Z rings; GO: 0051302 regulation of cell division; PDB: 3GHF_A 1HF2_C.
Probab=31.89 E-value=77 Score=24.56 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=34.5
Q ss_pred cccCCCcEEEecCCCHHHHHHHHHHHHHHHHc--CCCCEEEEEEE
Q 019523 188 GPAFGMPGFHVDGMDVLKVREVAKEAIERARR--GEGPTLVECET 230 (339)
Q Consensus 188 a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~--~~gP~lIev~t 230 (339)
+..+++..+.+...|+.++.+++.+-++.+-. .+.|++|++.-
T Consensus 10 g~~~~l~vl~l~~~d~~~l~~~L~~ki~~ap~FF~~~pvvldl~~ 54 (99)
T PF05209_consen 10 GSNFTLLVLRLRSADLDELLQALDEKIAQAPDFFKNAPVVLDLSN 54 (99)
T ss_dssp EETTEEEEEEECSS-HHHHHHHHHHHHHHTHHHCTTTEEEEEEEE
T ss_pred cCceeEEEEEeCCCCHHHHHHHHHHHHHhChHhHcCCCeEEehhh
Confidence 45578888999999999999999988887765 46799999853
No 290
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=31.81 E-value=82 Score=24.82 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=29.9
Q ss_pred CCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcC
Q 019523 127 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 167 (339)
Q Consensus 127 ~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN 167 (339)
+++..++++.-.|...+- .+.+..|.+.+.|+|.|..+.
T Consensus 52 ~~~d~vi~is~sg~~~~~--~~~~~~ak~~g~~vi~iT~~~ 90 (131)
T PF01380_consen 52 DPDDLVIIISYSGETREL--IELLRFAKERGAPVILITSNS 90 (131)
T ss_dssp STTEEEEEEESSSTTHHH--HHHHHHHHHTTSEEEEEESST
T ss_pred cccceeEeeeccccchhh--hhhhHHHHhcCCeEEEEeCCC
Confidence 456678888878877665 888899999999987776553
No 291
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=31.71 E-value=1.1e+02 Score=23.03 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=29.1
Q ss_pred hCChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHH
Q 019523 255 ARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVE 293 (339)
Q Consensus 255 ~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~ 293 (339)
.++-+..+-+.|++.++++++|.+.|.++.....++|..
T Consensus 14 ~~~~i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar~ 52 (83)
T cd08325 14 GKGVINGLLDDLLEKNVLNEEEMEKIKEENNTIMDKARV 52 (83)
T ss_pred hHhhHHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHHHH
Confidence 345567788889999999999999998875444444444
No 292
>PRK13938 phosphoheptose isomerase; Provisional
Probab=31.42 E-value=1.8e+02 Score=25.75 Aligned_cols=40 Identities=10% Similarity=0.034 Sum_probs=25.6
Q ss_pred CCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC
Q 019523 127 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 168 (339)
Q Consensus 127 ~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~ 168 (339)
.++..++++..-|.+.+- .+++..|...+.|+|.+..|.+
T Consensus 112 ~~~DllI~iS~SG~t~~v--i~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 112 RPGDTLFAISTSGNSMSV--LRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CCCCEEEEEcCCCCCHHH--HHHHHHHHHCCCEEEEEeCCCC
Confidence 355566666666665543 6777777777777766665543
No 293
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=31.26 E-value=4.2e+02 Score=26.24 Aligned_cols=73 Identities=21% Similarity=0.168 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhh
Q 019523 107 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK 186 (339)
Q Consensus 107 p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~ 186 (339)
=.++|..+..+.. + ...+|+-+|-|- .| ...-..|+..++++++++-.+. + .+|. .+ ..
T Consensus 92 r~al~~~l~A~~~-------G-k~~vIaetgaGn--hG--~A~A~~aa~~Gl~c~I~mp~~d--~----~rq~--~n-v~ 150 (397)
T PRK04346 92 NNVLGQALLAKRM-------G-KKRIIAETGAGQ--HG--VATATAAALLGLECVIYMGAED--V----ERQA--LN-VF 150 (397)
T ss_pred HHHHHHHHHHHHc-------C-CCeEEEecCcHH--HH--HHHHHHHHHcCCcEEEEecCCc--h----hhhh--hH-HH
Confidence 3466666543332 2 234666566663 33 2223345689999777765432 1 1111 11 34
Q ss_pred hcccCCCcEEEecC
Q 019523 187 KGPAFGMPGFHVDG 200 (339)
Q Consensus 187 ~a~a~G~~~~~Vdg 200 (339)
+.+.+|..++.|+.
T Consensus 151 ~m~~lGA~Vv~v~~ 164 (397)
T PRK04346 151 RMKLLGAEVVPVTS 164 (397)
T ss_pred HHHHCCCEEEEECC
Confidence 56789999999974
No 294
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=31.02 E-value=3.9e+02 Score=23.93 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=40.7
Q ss_pred CCcEEEEEeCCCCcccc-hHH-HHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhccc--CCCcE-EEecCCC
Q 019523 128 CDHVTLAFFGDGTCNNG-QFF-ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPA--FGMPG-FHVDGMD 202 (339)
Q Consensus 128 ~~~~vv~~~GDG~~~~g-~~~-eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a--~G~~~-~~Vdg~d 202 (339)
..++||-+.|||--+.| .-. .+-..+...++ .| |+..|........ .++....+. .|-|+ +.+...+
T Consensus 115 ~~RrVIDvSGDG~~N~G~~p~~~ard~~~~~Gi---tI---NgL~I~~~~~~~~--~~L~~yy~~~VIgGpgAFV~~a~~ 186 (205)
T PF06707_consen 115 CWRRVIDVSGDGPNNQGPRPVTSARDAAVAAGI---TI---NGLAILDDDPFGG--ADLDAYYRRCVIGGPGAFVETARG 186 (205)
T ss_pred CceEEEEECCCCCCCCCCCccHHHHHHHHHCCe---EE---eeeEecCCCCCcc--ccHHHHHhhhcccCCCceEEEcCC
Confidence 45899999999999988 322 22223333333 11 5545543322111 133333322 34444 4445556
Q ss_pred HHHHHHHHHHHH
Q 019523 203 VLKVREVAKEAI 214 (339)
Q Consensus 203 ~~~v~~a~~~A~ 214 (339)
+.+..+++++.+
T Consensus 187 ~~df~~AirrKL 198 (205)
T PF06707_consen 187 FEDFAEAIRRKL 198 (205)
T ss_pred HHHHHHHHHHHH
Confidence 667777766654
No 295
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=30.82 E-value=71 Score=31.42 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCCCCeeeeC
Q 019523 4 GRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVST 50 (339)
Q Consensus 4 ~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~~D~i~~~ 50 (339)
...||+|+..+ +|-. +.+..+.||-|+..++...++++|-|+++
T Consensus 64 ~~vlE~RiAaL--EGG~-aa~a~aSG~AA~~~ai~~la~aGD~iVss 107 (426)
T COG2873 64 TDVLEERIAAL--EGGV-AALAVASGQAAITYAILNLAGAGDNIVSS 107 (426)
T ss_pred HHHHHHHHHHh--hcch-hhhhhccchHHHHHHHHHhccCCCeeEee
Confidence 46799999886 4444 45667899999999999999999998775
No 296
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=30.23 E-value=1.8e+02 Score=27.34 Aligned_cols=66 Identities=23% Similarity=0.382 Sum_probs=39.1
Q ss_pred cccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcc--cchHHHHHHHH---------HhCCCCEEEEEEc
Q 019523 98 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN--NGQFFECLNMA---------ALWKLPIVFVVEN 166 (339)
Q Consensus 98 ~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~--~g~~~eal~~A---------~~~~Lpvi~vv~N 166 (339)
-+.-||.+++.++|.++......+. ..+-+.|+|.--|+.. +|. +.=|++| .+.+||.|.|+.|
T Consensus 130 df~FmgGSmGsVvGeki~ra~E~A~----e~k~P~v~f~aSGGARMQEg~-lSLMQMaktsaAl~~l~ea~lpyIsVLt~ 204 (294)
T COG0777 130 DFAFMGGSMGSVVGEKITRAIERAI----EDKLPLVLFSASGGARMQEGI-LSLMQMAKTSAALKRLSEAGLPYISVLTD 204 (294)
T ss_pred eccccccchhHHHHHHHHHHHHHHH----HhCCCEEEEecCcchhHhHHH-HHHHHHHHHHHHHHHHHhcCCceEEEecC
Confidence 3455677777888888764433221 1234567776666643 442 3333333 3568999988877
Q ss_pred CC
Q 019523 167 NL 168 (339)
Q Consensus 167 N~ 168 (339)
--
T Consensus 205 PT 206 (294)
T COG0777 205 PT 206 (294)
T ss_pred CC
Confidence 64
No 297
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=29.91 E-value=1e+02 Score=24.45 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=21.4
Q ss_pred CCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEE
Q 019523 128 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVV 164 (339)
Q Consensus 128 ~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv 164 (339)
++..++++.-.|...+- .+.+..|...+.|+|.|.
T Consensus 43 ~~dl~I~iS~SG~t~e~--i~~~~~a~~~g~~iI~IT 77 (119)
T cd05017 43 RKTLVIAVSYSGNTEET--LSAVEQAKERGAKIVAIT 77 (119)
T ss_pred CCCEEEEEECCCCCHHH--HHHHHHHHHCCCEEEEEe
Confidence 34456666666655544 666666666666666555
No 298
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=29.81 E-value=1.1e+02 Score=30.10 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=40.2
Q ss_pred hHHHHH----HHHHHHhcCcccccccCCCChHHHHHHHHHccCCCCeeeeCCCCcccccccCC
Q 019523 4 GRSFED----MCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGV 62 (339)
Q Consensus 4 ~R~~e~----~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~~D~i~~~~R~~~~~l~~g~ 62 (339)
.+.||+ ++.+++... ...+.++.|.-|....+.+.++++|.|+..--.|+..+..|.
T Consensus 72 ~~~lE~~~~~~la~l~g~~--~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~ 132 (416)
T PRK13034 72 VDEVEALAIERAKQLFGCD--YANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGA 132 (416)
T ss_pred HHHHHHHHHHHHHHHhCCC--ceEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCC
Confidence 577888 888776443 233345789999988888889999999876556665444454
No 299
>PRK06381 threonine synthase; Validated
Probab=29.22 E-value=2.8e+02 Score=26.13 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=27.0
Q ss_pred HHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCC
Q 019523 151 NMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 201 (339)
Q Consensus 151 ~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~ 201 (339)
..|+..++|+++|+-.+. +..-.+..++||..++.+++.
T Consensus 80 ~~aa~~G~~~~ivvp~~~------------~~~~~~~l~~~GA~V~~~~~~ 118 (319)
T PRK06381 80 YFARLYGLKAVIFIPRSY------------SNSRVKEMEKYGAEIIYVDGK 118 (319)
T ss_pred HHHHHcCCcEEEEECCCC------------CHHHHHHHHHcCCEEEEcCCC
Confidence 345689999888776543 122335677899999999864
No 300
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=29.16 E-value=2.4e+02 Score=27.05 Aligned_cols=108 Identities=24% Similarity=0.249 Sum_probs=62.0
Q ss_pred EEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecC-CCHHHHHHHH
Q 019523 132 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG-MDVLKVREVA 210 (339)
Q Consensus 132 vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg-~d~~~v~~a~ 210 (339)
+++.+ |+.+.+...+....|++++|..+++++|-. . ... .+.++ .+.+-+|+...-||. .|+. +...+
T Consensus 66 TlvT~--GgiQSNh~r~tAavA~~lGl~~v~ile~~~-~-~y~-----~ngn~-Ll~~l~G~~~~~~~~~~d~~-~~~~~ 134 (323)
T COG2515 66 TLVTY--GGIQSNHVRQTAAVAAKLGLKCVLILENIE-A-NYL-----LNGNL-LLSKLMGAEVRAVDAGTDIG-INASA 134 (323)
T ss_pred EEEEe--cccchhHHHHHHHHHHhcCCcEEEEEeccc-c-ccc-----cccch-hhhhhcCceEEEecCCCChh-hchhh
Confidence 44444 677777778888889999999999999854 1 000 11121 234456888887754 4541 22333
Q ss_pred HHHHHHHH-cCCCCEEEEEEEeeCCC-CCCCCCCCCCCHHHHHHHhh
Q 019523 211 KEAIERAR-RGEGPTLVECETYRFRG-HSLADPDELRDPAEKARYAA 255 (339)
Q Consensus 211 ~~A~~~ar-~~~gP~lIev~t~r~~g-h~~~D~~~yr~~~e~~~~~~ 255 (339)
....+..+ ++++|.+|-. .| |+.....-.+...|+..|.+
T Consensus 135 ~~~~e~~~~~g~kpyvIp~-----GG~~~~g~lGyv~~a~Ei~~Q~~ 176 (323)
T COG2515 135 EELAEEVRKQGGKPYVIPE-----GGSSPLGALGYVRLALEIAEQAE 176 (323)
T ss_pred HHHHHHHHhcCCCCcEecc-----CCcCccccccHHHHHHHHHHHHh
Confidence 44444443 3777888743 33 33322222366667665543
No 301
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.09 E-value=4.2e+02 Score=25.24 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=45.2
Q ss_pred CcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCC-CcEEEecCCCHHHHH
Q 019523 129 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFG-MPGFHVDGMDVLKVR 207 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G-~~~~~Vdg~d~~~v~ 207 (339)
.+.+|.++|-|+- .|- .-++++|.+.. .+.+.+=|.-+ .....+..+..| ++++.||=.|.++++
T Consensus 37 ~g~~vLITGgg~G-lGr-~ialefa~rg~--~~vl~Din~~~----------~~etv~~~~~~g~~~~y~cdis~~eei~ 102 (300)
T KOG1201|consen 37 SGEIVLITGGGSG-LGR-LIALEFAKRGA--KLVLWDINKQG----------NEETVKEIRKIGEAKAYTCDISDREEIY 102 (300)
T ss_pred cCCEEEEeCCCch-HHH-HHHHHHHHhCC--eEEEEeccccc----------hHHHHHHHHhcCceeEEEecCCCHHHHH
Confidence 4567888887753 332 44677776655 33333333211 122222222224 678899999999998
Q ss_pred HHHHHHHHHHHcCCCCEEEEE
Q 019523 208 EVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 208 ~a~~~A~~~ar~~~gP~lIev 228 (339)
+..+ ..++.-||+-|-+
T Consensus 103 ~~a~----~Vk~e~G~V~ILV 119 (300)
T KOG1201|consen 103 RLAK----KVKKEVGDVDILV 119 (300)
T ss_pred HHHH----HHHHhcCCceEEE
Confidence 7443 3344556665555
No 302
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=28.88 E-value=1.2e+02 Score=24.00 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=23.8
Q ss_pred CCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC
Q 019523 128 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 168 (339)
Q Consensus 128 ~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~ 168 (339)
++..++++.--|...+- .+++..|...+.|+|.|..|..
T Consensus 47 ~~d~vi~iS~sG~t~~~--~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 47 PGDVVIAISNSGETDEL--LNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCEEEEEeCCCCCHHH--HHHHHHHHHCCCeEEEEeCCCC
Confidence 44556666555555443 6677777777777766666543
No 303
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=28.64 E-value=1.2e+02 Score=23.87 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=21.6
Q ss_pred CCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEc
Q 019523 128 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVEN 166 (339)
Q Consensus 128 ~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~N 166 (339)
++..+|++.-.|...+- .+.+..|...+.|+|.|..|
T Consensus 46 ~~d~~I~iS~sG~t~e~--~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 46 EDTLVIAISQSGETADT--LAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred CCcEEEEEeCCcCCHHH--HHHHHHHHHcCCeEEEEECC
Confidence 34455566555555543 66666666666666655554
No 304
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=28.49 E-value=1.9e+02 Score=20.38 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHH
Q 019523 260 TALKKYLIESSLASEAELKAIEKKIDEVVEDA 291 (339)
Q Consensus 260 ~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a 291 (339)
+.+-+..++.|.+|.|.-+.|.+.+.+..+..
T Consensus 21 K~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 21 KQIIDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 44556668999999999999998888876554
No 305
>PF03744 BioW: 6-carboxyhexanoate--CoA ligase; InterPro: IPR005499 This family contains the enzyme 6-carboxyhexanoate--CoA ligase 6.2.1.14 from EC. This enzyme is involved in the first step of biotin synthesis, where it converts pimelate into pimeloyl-CoA []. The enzyme requires magnesium as a cofactor and forms a homodimer [].; GO: 0009102 biotin biosynthetic process
Probab=28.19 E-value=1.9e+02 Score=26.52 Aligned_cols=74 Identities=26% Similarity=0.365 Sum_probs=45.0
Q ss_pred hHHHHHHHHH-hCCCC-EE-EEEE-cC-Ceeeccccccc---ccChhhhhhcccCCCcEEEecCC-CHHHHHHHHHHHHH
Q 019523 145 QFFECLNMAA-LWKLP-IV-FVVE-NN-LWAIGMSHLRA---TSDPQIYKKGPAFGMPGFHVDGM-DVLKVREVAKEAIE 215 (339)
Q Consensus 145 ~~~eal~~A~-~~~Lp-vi-~vv~-NN-~~~i~~~~~~~---~~~~d~~~~a~a~G~~~~~Vdg~-d~~~v~~a~~~A~~ 215 (339)
.+.|||.+|. ....| || =+|+ || .|..|...... ..-+.+.....-.|..++.|++. |..+ .++
T Consensus 157 r~~EAL~LAsKV~~~PgiiaELC~SDDP~YtTGYVA~~~~GY~RI~~mK~~G~~~GGRvffv~~~~d~~~-------~i~ 229 (239)
T PF03744_consen 157 RFREALALASKVAAAPGIIAELCWSDDPDYTTGYVASKKFGYHRITNMKEAGSPKGGRVFFVDGSIDIEE-------LID 229 (239)
T ss_pred hHHHHHHHHHHHhcCCcceEEEEecCCCCCceEEEEeCCcceEECccccccCCCCCCEEEEEeCCCCHHH-------HHH
Confidence 5699999997 56788 43 3444 44 56544433222 13345556666779999999876 4332 334
Q ss_pred HHHcCCCCEEEE
Q 019523 216 RARRGEGPTLVE 227 (339)
Q Consensus 216 ~ar~~~gP~lIe 227 (339)
+. .+.|+||+
T Consensus 230 yL--e~~pVLv~ 239 (239)
T PF03744_consen 230 YL--ENQPVLVE 239 (239)
T ss_pred HH--hcCcEEeC
Confidence 43 35798874
No 306
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=27.10 E-value=4.1e+02 Score=22.85 Aligned_cols=66 Identities=9% Similarity=0.003 Sum_probs=41.2
Q ss_pred CcEEEEEeCCCCccc-chHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHH
Q 019523 129 DHVTLAFFGDGTCNN-GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 207 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~-g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~ 207 (339)
.+.++++++||.... +...+....+...+++|.+|-..+. ..-+.+++++-|..++.+.. ..++.
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~------------~~~L~~ia~~tgG~~~~~~~--~~~l~ 172 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAE------------MHICKEICKATNGTYKVILD--ETHLK 172 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechH------------HHHHHHHHHHhCCeeEeeCC--HHHHH
Confidence 456788888887553 3334566677777877665533221 12366788888999998843 33544
Q ss_pred H
Q 019523 208 E 208 (339)
Q Consensus 208 ~ 208 (339)
+
T Consensus 173 ~ 173 (183)
T cd01453 173 E 173 (183)
T ss_pred H
Confidence 4
No 307
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=26.72 E-value=70 Score=24.44 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCcccHHHHHHHHHHH
Q 019523 259 ITALKKYLIESSLASEAELKAIEKKI 284 (339)
Q Consensus 259 l~~~~~~L~~~g~~~~~~~~~i~~~~ 284 (339)
+..+..+|++.|++|+++.+.|+.+-
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~ 41 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKA 41 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCC
Confidence 45577889999999999999987643
No 308
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=26.14 E-value=77 Score=21.99 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=15.2
Q ss_pred HHHHHHHcCcccHHHHHHHH
Q 019523 262 LKKYLIESSLASEAELKAIE 281 (339)
Q Consensus 262 ~~~~L~~~g~~~~~~~~~i~ 281 (339)
.++..++.|++++++++++-
T Consensus 28 vre~v~~~g~lt~ee~d~ll 47 (55)
T PF10415_consen 28 VREVVLEEGLLTEEELDELL 47 (55)
T ss_dssp HHHHHHHTTSS-HHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHc
Confidence 55667889999999998763
No 309
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=26.01 E-value=1.9e+02 Score=19.30 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHH
Q 019523 259 ITALKKYLIESSLASEAELKAIEKKIDEVVED 290 (339)
Q Consensus 259 l~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 290 (339)
+..|+..|.+.|. ++++|++--+++++.+.+
T Consensus 13 ~~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~ 43 (46)
T PF08312_consen 13 CLELRDELEEQGY-SEEEIEEKVDELRKKLLE 43 (46)
T ss_dssp HHHHHHHHHHHT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHh
Confidence 4568999999986 888888777777766543
No 310
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=25.76 E-value=90 Score=30.71 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVF 162 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~ 162 (339)
+.++|++||| +|+-+-|..++.|+.=
T Consensus 424 K~~yvvIgdG-------~eee~aAK~ln~Pfwr 449 (468)
T KOG3107|consen 424 KVVYVVIGDG-------VEEEQAAKALNMPFWR 449 (468)
T ss_pred ceEEEEecCc-------HHHHHHHHhhCCceEe
Confidence 5678888888 7888888888888643
No 311
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=25.68 E-value=95 Score=26.65 Aligned_cols=83 Identities=18% Similarity=0.250 Sum_probs=49.4
Q ss_pred EEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccc--------cccChhhhhhcccCCCcEEEecCCC
Q 019523 131 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR--------ATSDPQIYKKGPAFGMPGFHVDGMD 202 (339)
Q Consensus 131 ~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~--------~~~~~d~~~~a~a~G~~~~~Vdg~d 202 (339)
.-++++|-.....+ .+ .+....++++.+...+|...+...... -.........|+.+|++++.+.. .
T Consensus 78 ~~Iavv~~~~~~~~--~~--~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~v~i~s-g 152 (176)
T PF06506_consen 78 PKIAVVGYPNIIPG--LE--SIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPGVLIES-G 152 (176)
T ss_dssp SEEEEEEESS-SCC--HH--HHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEEEESS---
T ss_pred CcEEEEecccccHH--HH--HHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcEEEEEe-c
Confidence 45666666666655 33 334455889888888774323211111 01233456788999999999975 3
Q ss_pred HHHHHHHHHHHHHHHH
Q 019523 203 VLKVREVAKEAIERAR 218 (339)
Q Consensus 203 ~~~v~~a~~~A~~~ar 218 (339)
.+.++.|+.+|++-++
T Consensus 153 ~esi~~Al~eA~~i~~ 168 (176)
T PF06506_consen 153 EESIRRALEEALRIAR 168 (176)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5688888888877654
No 312
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=25.62 E-value=1.6e+02 Score=30.24 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=55.5
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEc-CCeeecccc--cccccChhh---hhhcccCCCcEEEecCCCH
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVEN-NLWAIGMSH--LRATSDPQI---YKKGPAFGMPGFHVDGMDV 203 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~N-N~~~i~~~~--~~~~~~~d~---~~~a~a~G~~~~~Vdg~d~ 203 (339)
.-.|+.+|=|+++- +..+.-|=..++|||+||-- |.=..++.. .....+.|| .++++..-+...-++ |.
T Consensus 68 ~a~VtTfgVGeLSA---lNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~--~~ 142 (561)
T KOG1184|consen 68 GACVTTFGVGELSA---LNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMIN--DI 142 (561)
T ss_pred eEEEEEeccchhhh---hcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhc--CH
Confidence 35677778887651 22344455679999999732 110111110 111233443 344444444444443 33
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEEEee
Q 019523 204 LKVREVAKEAIERARRGEGPTLVECETYR 232 (339)
Q Consensus 204 ~~v~~a~~~A~~~ar~~~gP~lIev~t~r 232 (339)
++..+.+..|++.+....+|+-|.+.+.-
T Consensus 143 e~A~~~ID~aI~~~~~~~rPVYi~iP~n~ 171 (561)
T KOG1184|consen 143 EDAPEQIDKAIRTALKESKPVYIGVPANL 171 (561)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEeeccc
Confidence 45556677888888888999999997653
No 313
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.28 E-value=1e+02 Score=30.76 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCCCCeeeeC
Q 019523 4 GRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVST 50 (339)
Q Consensus 4 ~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~~D~i~~~ 50 (339)
.+.||+.+..+... + .-+..+.|..|+..++..+++++|.|...
T Consensus 63 v~~lE~~la~leg~-~--~av~~~SG~aAi~~al~all~~GD~VI~~ 106 (432)
T PRK06702 63 LAAFEQKLAELEGG-V--GAVATASGQAAIMLAVLNICSSGDHLLCS 106 (432)
T ss_pred HHHHHHHHHHHhCC-C--cEEEECCHHHHHHHHHHHhcCCCCEEEEC
Confidence 57899999987543 2 13446899999998888889999977654
No 314
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=25.24 E-value=1.6e+02 Score=28.52 Aligned_cols=112 Identities=17% Similarity=0.151 Sum_probs=54.4
Q ss_pred CCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHH
Q 019523 128 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 207 (339)
Q Consensus 128 ~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~ 207 (339)
.+++-+|+---|-.... ....|-.|..-.+|++.| -.+.--..-........|+..+++..--..++| ..+..|-
T Consensus 66 ~gnigvcigtsgpagtd-mitglysa~adsipilci--tgqaprarl~kedfqavdi~~ia~pv~kwavtv--~epalvp 140 (592)
T COG3960 66 AGNIGVCIGTSGPAGTD-MITGLYSASADSIPILCI--TGQAPRARLHKEDFQAVDIEAIAKPVSKWAVTV--REPALVP 140 (592)
T ss_pred CCceEEEecCCCCCccc-hhhhhhhcccccccEEEe--cCCCchhhhchhhhhhhhHHHhhhhhhhhhhhh--cchhhhH
Confidence 44455554333322221 144566666666776544 222000000001112345555555443333344 3445666
Q ss_pred HHHHHHHHHHHcC-CCCEEEEEEEeeCCCCCCCCCCCC
Q 019523 208 EVAKEAIERARRG-EGPTLVECETYRFRGHSLADPDEL 244 (339)
Q Consensus 208 ~a~~~A~~~ar~~-~gP~lIev~t~r~~gh~~~D~~~y 244 (339)
.+++.|+...|++ .||++|++...-...--+.|+..|
T Consensus 141 ~v~qkafhlmrs~rpgpvlidlp~dvq~aeiefd~d~y 178 (592)
T COG3960 141 RVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDMY 178 (592)
T ss_pred HHHHHHHHHHhcCCCCCeEEecccceEEEEEecCcccc
Confidence 7888899888874 589999885433222223455444
No 315
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=25.17 E-value=59 Score=23.84 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCCCEEEEE
Q 019523 210 AKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 210 ~~~A~~~ar~~~gP~lIev 228 (339)
+.+|++.|++.++|++|.+
T Consensus 6 ~~~al~~A~~~~kpvlv~f 24 (82)
T PF13899_consen 6 YEEALAEAKKEGKPVLVDF 24 (82)
T ss_dssp HHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 4568888889999999998
No 316
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=25.17 E-value=6.4e+02 Score=24.53 Aligned_cols=86 Identities=24% Similarity=0.302 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecc-cccccccChhh
Q 019523 106 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM-SHLRATSDPQI 184 (339)
Q Consensus 106 ~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~-~~~~~~~~~d~ 184 (339)
+-.++|-++-.|..+ +.++|+=+|-| +.| ......++.++++.++. ++. ...+|. ++.
T Consensus 88 iNN~lGQ~LLAkrMG--------K~riIAETGAG--QHG--VAtAta~A~fgl~C~iY-------MGa~Dv~RQ~--~NV 146 (396)
T COG0133 88 INNALGQALLAKRMG--------KTRIIAETGAG--QHG--VATATAAALFGLECVIY-------MGAEDVERQA--LNV 146 (396)
T ss_pred HHHHHHHHHHHHHhC--------CceEEeecCCC--ccc--HHHHHHHHHhCCceEEE-------ecchhhhhcc--cch
Confidence 456777776555542 45688888776 566 34445567999996544 221 223343 222
Q ss_pred hhhcccCCCcEEEec-CCCHHHHHHHHHHHHH
Q 019523 185 YKKGPAFGMPGFHVD-GMDVLKVREVAKEAIE 215 (339)
Q Consensus 185 ~~~a~a~G~~~~~Vd-g~d~~~v~~a~~~A~~ 215 (339)
-+.+-+|..++.|. |.. -+.+|+.+|++
T Consensus 147 -fRM~LlGA~V~pV~sGs~--TLKDA~neAlR 175 (396)
T COG0133 147 -FRMRLLGAEVVPVTSGSG--TLKDAINEALR 175 (396)
T ss_pred -hhhhhcCceEEEeccCCc--hHHHHHHHHHH
Confidence 34566788888884 443 33444444443
No 317
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=24.95 E-value=3.7e+02 Score=25.13 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=25.8
Q ss_pred HHHHH-HHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCC
Q 019523 148 ECLNM-AALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMD 202 (339)
Q Consensus 148 eal~~-A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d 202 (339)
.++.+ +..+++++++++-.+. . . .....+.++||...+.|++.+
T Consensus 71 ~alA~~a~~~G~~~~ivvp~~~-~-------~---~~~~~~~~~~Ga~v~~v~~~~ 115 (311)
T TIGR01275 71 RATALAAKKLGLDAVLVLREKE-E-------L---NGNLLLDKLMGAETRVYSAEE 115 (311)
T ss_pred HHHHHHHHHhCCceEEEecCCc-c-------C---CCCHHHHHHcCCEEEEECchh
Confidence 34444 4578999887776531 0 0 011123467899888887544
No 318
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=24.64 E-value=1.1e+02 Score=31.51 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=10.1
Q ss_pred ccccccccchHHHHHHHHH
Q 019523 97 GGFAFIGEGIPVATGAAFT 115 (339)
Q Consensus 97 ~~~g~lG~~~p~AiG~a~A 115 (339)
.-+..+|.++..+.|.++.
T Consensus 89 ~D~t~~gGS~g~~~~~K~~ 107 (512)
T TIGR01117 89 QDFTVMGGSLGEMHAAKIV 107 (512)
T ss_pred ECCcccccCCCHHHHHHHH
Confidence 4444555555555555544
No 319
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=24.61 E-value=3.6e+02 Score=25.45 Aligned_cols=45 Identities=9% Similarity=0.053 Sum_probs=29.0
Q ss_pred HHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHH
Q 019523 151 NMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 207 (339)
Q Consensus 151 ~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~ 207 (339)
..|...++++++++-.+... +.-....++||..++.+++. ..+..
T Consensus 88 ~~a~~~g~~~~v~~p~~~~s-----------~~k~~~~~~~GA~Vi~~~~~-~~~~~ 132 (328)
T TIGR00260 88 AYAGKAGVKVVILYPAGKIS-----------LGKLAQALGYNAEVVAIDGN-FDDAQ 132 (328)
T ss_pred HHhccCCCcEEEEECCCCCC-----------HHHHHHHHhcCcEEEEecCC-HHHHH
Confidence 45678999988887765311 22234456789999999873 44433
No 320
>PRK06988 putative formyltransferase; Provisional
Probab=24.33 E-value=1.8e+02 Score=27.65 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=36.3
Q ss_pred EEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecC
Q 019523 133 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 200 (339)
Q Consensus 133 v~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg 200 (339)
|+|+|.+.+.. ..|......+..++.|+.+..-.-+ ......+.++|+.+|++++..+.
T Consensus 5 Ivf~Gs~~~a~----~~L~~L~~~~~~i~~Vvt~~d~~~~-----~~~~~~v~~~A~~~gip~~~~~~ 63 (312)
T PRK06988 5 AVVFAYHNVGV----RCLQVLLARGVDVALVVTHEDNPTE-----NIWFGSVAAVAAEHGIPVITPAD 63 (312)
T ss_pred EEEEeCcHHHH----HHHHHHHhCCCCEEEEEcCCCCCcc-----CcCCCHHHHHHHHcCCcEEcccc
Confidence 78888887653 3444444456777777766420111 11234677889999999987543
No 321
>PF03385 DUF288: Protein of unknown function, DUF288; InterPro: IPR005049 This is a protein family of unknown function.
Probab=24.26 E-value=2.3e+02 Score=27.78 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhh-hhhcccCCCCC---CCCCCC-Cc--ccccc
Q 019523 257 DPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQ-LLENVFADPKG---FGIGPD-GR--YRCED 329 (339)
Q Consensus 257 dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~-~~~~v~~~~~~---~~~~~~-~~--~~~~~ 329 (339)
+.|..+...|.+.|+|++++++-+++=+.+...-.++ .|..-. -+++-|+...+ +..+.+ +- |+=-|
T Consensus 74 ~~Il~L~~~m~e~GfW~~~Dv~L~~AWL~DL~sVGY~------fP~L~~~~~~dpYs~s~net~R~vNCRRm~leF~lvd 147 (390)
T PF03385_consen 74 ECILDLYVAMAEEGFWGEEDVKLMQAWLQDLKSVGYK------FPRLRSEEYRDPYSPSTNETSRDVNCRRMHLEFELVD 147 (390)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhh------chhhhhcccCCCCCCCCCccccccccccccceeeccC
Confidence 4567888899999999999988666555555433333 243211 22333332221 233343 22 55558
Q ss_pred CCccccC
Q 019523 330 PKFTEGT 336 (339)
Q Consensus 330 ~~~~~~~ 336 (339)
||+.+..
T Consensus 148 p~~~~~~ 154 (390)
T PF03385_consen 148 PKKEESQ 154 (390)
T ss_pred CcccccH
Confidence 9887643
No 322
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=23.74 E-value=3.8e+02 Score=24.89 Aligned_cols=45 Identities=18% Similarity=0.045 Sum_probs=33.7
Q ss_pred hhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 019523 183 QIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 231 (339)
Q Consensus 183 d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~ 231 (339)
-+...++.+|++.......++.+..+.+++.+ ..+.|++|-+.++
T Consensus 54 ~~~~~~~~lG~~~~~~~~~~~~~~~~~l~~~l----~~g~pv~~~~D~~ 98 (317)
T PF14399_consen 54 FEENLLERLGIKYEWREFSSPDEAWEELKEAL----DAGRPVIVWVDMY 98 (317)
T ss_pred HHHHHHHHCCceEEEEecCCHHHHHHHHHHHH----hCCCceEEEeccc
Confidence 34456778999999888888888777665555 4567999998665
No 323
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=23.65 E-value=1.4e+02 Score=24.95 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=32.3
Q ss_pred CCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC
Q 019523 127 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 168 (339)
Q Consensus 127 ~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~ 168 (339)
+++..++++..-|.+..- .+.+..|...+.|+|.|..|.+
T Consensus 78 ~~~D~~i~iS~sG~t~~~--~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 78 QKGDVLLGISTSGNSKNV--LKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCCEEEEEcCCCCCHHH--HHHHHHHHHCCCEEEEEeCCCC
Confidence 456788888888877655 8999999999999988877654
No 324
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=23.57 E-value=5.8e+02 Score=23.43 Aligned_cols=88 Identities=23% Similarity=0.184 Sum_probs=54.8
Q ss_pred CCcEEEEEeCCCCcccchHHHHHHHHHh-CCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHH
Q 019523 128 CDHVTLAFFGDGTCNNGQFFECLNMAAL-WKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 206 (339)
Q Consensus 128 ~~~~vv~~~GDG~~~~g~~~eal~~A~~-~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v 206 (339)
.+...+.+.-|-.+..|. .+-+..+.. -++||+. ..| + ..+.-...+..+|...+.+...+...
T Consensus 82 ~GA~aisvlte~~~f~g~-~~~l~~v~~~v~iPvl~----kdf-i--------~~~~qi~~a~~~GAD~VlLi~~~l~~- 146 (260)
T PRK00278 82 GGAACLSVLTDERFFQGS-LEYLRAARAAVSLPVLR----KDF-I--------IDPYQIYEARAAGADAILLIVAALDD- 146 (260)
T ss_pred CCCeEEEEecccccCCCC-HHHHHHHHHhcCCCEEe----eee-c--------CCHHHHHHHHHcCCCEEEEEeccCCH-
Confidence 355677888887766554 666776664 5899873 111 1 11223455667788888887655211
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEEe
Q 019523 207 REVAKEAIERARRGEGPTLVECETY 231 (339)
Q Consensus 207 ~~a~~~A~~~ar~~~gP~lIev~t~ 231 (339)
+.+++.+++++..+.-+++|+.+.
T Consensus 147 -~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 147 -EQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred -HHHHHHHHHHHHcCCeEEEEeCCH
Confidence 245566777777777888888654
No 325
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=23.57 E-value=1.5e+02 Score=25.90 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=32.7
Q ss_pred CCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC
Q 019523 127 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 168 (339)
Q Consensus 127 ~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~ 168 (339)
.++..++++..-|....- .+++..|...+.|+|.|..|++
T Consensus 110 ~~~Dv~I~iS~SG~t~~~--i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 110 REGDVLLGISTSGNSGNI--IKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCCEEEEEeCCCCCHHH--HHHHHHHHHCCCeEEEEeCCCC
Confidence 467788889988877654 8899999999999988877654
No 326
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=23.53 E-value=92 Score=24.10 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHcCcccHHHHHHHHHHHHH
Q 019523 257 DPITALKKYLIESSLASEAELKAIEKKIDE 286 (339)
Q Consensus 257 dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~ 286 (339)
.++..+-+.|.+.|++|+++.+.|+.+...
T Consensus 23 ~~v~~ilD~Ll~~~Vlt~ee~e~I~~~~t~ 52 (94)
T cd08329 23 TSVLPILDSLLSANVITEQEYDVIKQKTQT 52 (94)
T ss_pred hhhHHHHHHHHHcCCCCHHHHHHHHcCCCh
Confidence 445666788999999999999998775444
No 327
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=23.16 E-value=3e+02 Score=24.94 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=30.8
Q ss_pred hhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 019523 182 PQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 182 ~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev 228 (339)
..+.+..+.+|..+......+..++.+++++..++....+.-+++-+
T Consensus 33 ~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~ 79 (241)
T smart00115 33 ENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV 79 (241)
T ss_pred HHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEE
Confidence 34667778899999888778888887777665432222234555544
No 328
>PRK13936 phosphoheptose isomerase; Provisional
Probab=23.00 E-value=1.5e+02 Score=25.99 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=33.3
Q ss_pred CCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEEEEcCC
Q 019523 127 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 168 (339)
Q Consensus 127 ~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~vv~NN~ 168 (339)
.++..++++...|....- .+.+..|...+.|+|.|..+++
T Consensus 110 ~~~Dv~i~iS~sG~t~~~--~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 110 QPGDVLLAISTSGNSANV--IQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred CCCCEEEEEeCCCCcHHH--HHHHHHHHHCCCeEEEEECCCC
Confidence 467789999999977654 8899999999999998877654
No 329
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=22.76 E-value=3.8e+02 Score=24.09 Aligned_cols=91 Identities=19% Similarity=0.249 Sum_probs=52.4
Q ss_pred EEEEeCCCCcc-cchHHHHHHHHH-hCCCCEEEEEEcCCe-eecccccc------cccChhhhhhcccCCCcEEEecCCC
Q 019523 132 TLAFFGDGTCN-NGQFFECLNMAA-LWKLPIVFVVENNLW-AIGMSHLR------ATSDPQIYKKGPAFGMPGFHVDGMD 202 (339)
Q Consensus 132 vv~~~GDG~~~-~g~~~eal~~A~-~~~Lpvi~vv~NN~~-~i~~~~~~------~~~~~d~~~~a~a~G~~~~~Vdg~d 202 (339)
++...|=|++. .| |.+|+ +.++.+-+++.+.+- -+...... ..-..++.+.++..|++...-+ .+
T Consensus 45 ifmtsGhGGC~P~G-----LAlAA~rrG~~vev~~~~~~plfld~vr~~~kk~v~~~v~~~f~~~a~~~gv~~~~~~-~~ 118 (207)
T PF11814_consen 45 IFMTSGHGGCGPFG-----LALAAARRGFKVEVWVSTDGPLFLDSVRSEEKKEVMELVHEDFREEAEQAGVPVHYRP-LS 118 (207)
T ss_pred ecccCCCCCcChHH-----HHHHHHHcCCceEEEECCCCCceeccCCCHHHHHHHHHHHHHHHHHHHHCCCceecCC-CC
Confidence 34556888877 55 55554 568888777777761 11111111 1123467778888898876432 33
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCC
Q 019523 203 VLKVREVAKEAIERARRGEGPTLVECETYRFRGH 236 (339)
Q Consensus 203 ~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh 236 (339)
..++ ++++ +.++-+||-+.+||+.|.
T Consensus 119 ~~~l----~~~l----~~G~~~lvLIS~y~~~g~ 144 (207)
T PF11814_consen 119 LADL----RAAL----AAGAIVLVLISTYRMDGK 144 (207)
T ss_pred HHHH----HHHH----HCCCEEEEEEeecccCCC
Confidence 3333 2233 345556666789998764
No 330
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=22.43 E-value=4.2e+02 Score=23.21 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=25.0
Q ss_pred cEEEEEeCCC-CcccchHHHHHHHHHhCCCCEEEE
Q 019523 130 HVTLAFFGDG-TCNNGQFFECLNMAALWKLPIVFV 163 (339)
Q Consensus 130 ~~vv~~~GDG-~~~~g~~~eal~~A~~~~Lpvi~v 163 (339)
.++|+|+|++ ....+..++....+...++.|-+|
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI 142 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDII 142 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEE
Confidence 3667777777 555777778888888888887666
No 331
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=21.97 E-value=99 Score=23.22 Aligned_cols=27 Identities=4% Similarity=0.138 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHcCcccHHHHHHHHHHH
Q 019523 258 PITALKKYLIESSLASEAELKAIEKKI 284 (339)
Q Consensus 258 Pl~~~~~~L~~~g~~~~~~~~~i~~~~ 284 (339)
.+..+-+.|...|++|+++.+.|+++-
T Consensus 16 ~v~~ilD~L~~~~Vit~e~~~~I~a~~ 42 (82)
T cd08330 16 NVDPILDKLHGKKVITQEQYSEVRAEK 42 (82)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHcCC
Confidence 466677889999999999999998754
No 332
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=21.75 E-value=1.5e+02 Score=28.00 Aligned_cols=42 Identities=12% Similarity=0.036 Sum_probs=29.7
Q ss_pred CcEEEEEeCCCCcccch--------HHHHHHHHHhCCCCEEEEEEcCCee
Q 019523 129 DHVTLAFFGDGTCNNGQ--------FFECLNMAALWKLPIVFVVENNLWA 170 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~g~--------~~eal~~A~~~~Lpvi~vv~NN~~~ 170 (339)
+++|+++.=|-.+..|. +...+.+|...++|+|+++...+..
T Consensus 119 G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dSgGaR 168 (285)
T TIGR00515 119 GMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGAR 168 (285)
T ss_pred CEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcc
Confidence 56777777785555443 2345677889999999998888753
No 333
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=21.74 E-value=3.5e+02 Score=27.08 Aligned_cols=92 Identities=17% Similarity=0.051 Sum_probs=57.2
Q ss_pred EEEEeCCCC--cccchHHHHHHHHHhCCCCEEEEEEcCCe----eecccccc----ccc---------ChhhhhhcccCC
Q 019523 132 TLAFFGDGT--CNNGQFFECLNMAALWKLPIVFVVENNLW----AIGMSHLR----ATS---------DPQIYKKGPAFG 192 (339)
Q Consensus 132 vv~~~GDG~--~~~g~~~eal~~A~~~~Lpvi~vv~NN~~----~i~~~~~~----~~~---------~~d~~~~a~a~G 192 (339)
+++|.+|+. .......+++..+...+.++++-++|+.. .+...... ... ......+++.+|
T Consensus 144 ~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g 223 (430)
T COG0044 144 FKGFMDDSTGALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATG 223 (430)
T ss_pred eEEEecCCcCcCCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhC
Confidence 478888885 55667789999999999999999999841 11100000 001 123345677788
Q ss_pred CcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 019523 193 MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 228 (339)
Q Consensus 193 ~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev 228 (339)
.++..+.=.-..++ +.++.++..+.++-.|+
T Consensus 224 ~~vhi~HiSt~~sv-----~li~~ak~~g~~vt~Ev 254 (430)
T COG0044 224 ARVHICHISTKESV-----ELIRAAKAEGIRVTAEV 254 (430)
T ss_pred CcEEEEEcCCHHHH-----HHHHHHhhcCCceEEee
Confidence 66664433333333 24556666677888888
No 334
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=21.52 E-value=1.3e+02 Score=26.35 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHH
Q 019523 259 ITALKKYLIESSLASEAELKAIEKKIDEV 287 (339)
Q Consensus 259 l~~~~~~L~~~g~~~~~~~~~i~~~~~~~ 287 (339)
+..++..|+++|+++.++++++.+.+..+
T Consensus 3 ~~Ale~ll~eKGli~~~~id~~i~~~~~~ 31 (185)
T TIGR01323 3 AKALEQVLKSKGLIPEGAVDQLTSLYENE 31 (185)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 35678889999999999999988877775
No 335
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=21.34 E-value=1.4e+02 Score=27.67 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCcccchHHHHHHHHHhCCCCEEEE
Q 019523 130 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFV 163 (339)
Q Consensus 130 ~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpvi~v 163 (339)
+..+|++||| .++-..|...+.|++=|
T Consensus 230 ~~~f~~IGDG-------~eEe~aAk~l~wPFw~I 256 (274)
T TIGR01658 230 KVRFCAIGDG-------WEECTAAQAMNWPFVKI 256 (274)
T ss_pred CceEEEeCCC-------hhHHHHHHhcCCCeEEe
Confidence 5789999998 77778888999997655
No 336
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=21.27 E-value=4.7e+02 Score=24.09 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=22.3
Q ss_pred EEEeCCCCcc--cchHHHHHHHHHhC---CCCEEEEEEcC
Q 019523 133 LAFFGDGTCN--NGQFFECLNMAALW---KLPIVFVVENN 167 (339)
Q Consensus 133 v~~~GDG~~~--~g~~~eal~~A~~~---~Lpvi~vv~NN 167 (339)
|.|--||+.. +|.+.-++.+|..+ +..++|++.+.
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~ 41 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPL 41 (279)
T ss_pred EEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4455566644 66777777777644 45577777654
No 337
>PLN02569 threonine synthase
Probab=21.22 E-value=5.9e+02 Score=25.88 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=23.1
Q ss_pred HHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecC
Q 019523 152 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 200 (339)
Q Consensus 152 ~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg 200 (339)
.|+..++|+++++-.+... +.-....++||..++.|++
T Consensus 205 yaa~~Gl~~~I~vP~~~~~-----------~~k~~qi~a~GA~Vi~v~g 242 (484)
T PLN02569 205 YCAAAGIPSIVFLPADKIS-----------IAQLVQPIANGALVLSIDT 242 (484)
T ss_pred HHHhcCCeEEEEEcCCCCC-----------HHHHHHHHhcCCEEEEECC
Confidence 4678899988887665311 1122334566777777766
No 338
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=21.08 E-value=1.6e+02 Score=28.01 Aligned_cols=43 Identities=14% Similarity=0.030 Sum_probs=31.7
Q ss_pred CcEEEEEeCCCCcccchH--------HHHHHHHHhCCCCEEEEEEcCCeee
Q 019523 129 DHVTLAFFGDGTCNNGQF--------FECLNMAALWKLPIVFVVENNLWAI 171 (339)
Q Consensus 129 ~~~vv~~~GDG~~~~g~~--------~eal~~A~~~~Lpvi~vv~NN~~~i 171 (339)
+++|+++.-|-.+..|.. ..++.+|.+.++|+|+++...+..+
T Consensus 132 Gr~v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~SGGARm 182 (296)
T CHL00174 132 GIPVALGVMDFQFMGGSMGSVVGEKITRLIEYATNESLPLIIVCASGGARM 182 (296)
T ss_pred CEEEEEEEECCcccccCcCHHHHHHHHHHHHHHHHcCCCEEEEECCCCccc
Confidence 567888888977765532 3467788899999999888776433
No 339
>PRK08197 threonine synthase; Validated
Probab=20.86 E-value=7.1e+02 Score=24.30 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=25.8
Q ss_pred HHHHhCCCCEEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCC
Q 019523 151 NMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 201 (339)
Q Consensus 151 ~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~ 201 (339)
..|+..++++++++-.+- .+.-....++||..++.|++.
T Consensus 144 ~~aa~~G~~~~v~vp~~~------------~~~k~~~~~~~GA~Vi~v~~~ 182 (394)
T PRK08197 144 AYAARAGIRATIFMPADA------------PEITRLECALAGAELYLVDGL 182 (394)
T ss_pred HHHHHcCCcEEEEEcCCC------------CHHHHHHHHHcCCEEEEECCC
Confidence 345678999888876553 012234567888888888764
No 340
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=20.77 E-value=6.7e+02 Score=23.08 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=46.2
Q ss_pred CCcEEEEEeCCCCcccc--hHHHHHHHHHhCCCCEEEEEEcCCe--eeccccccc-ccChhhhhhcccCCCcEEEecCCC
Q 019523 128 CDHVTLAFFGDGTCNNG--QFFECLNMAALWKLPIVFVVENNLW--AIGMSHLRA-TSDPQIYKKGPAFGMPGFHVDGMD 202 (339)
Q Consensus 128 ~~~~vv~~~GDG~~~~g--~~~eal~~A~~~~Lpvi~vv~NN~~--~i~~~~~~~-~~~~d~~~~a~a~G~~~~~Vdg~d 202 (339)
|.+++++++.||.-..+ ...+.+..+...+++|..|-.-... .++...... .....+..+|+.=|..++.++.++
T Consensus 163 p~rk~iIllTDG~~~~~~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~~~~~ 242 (296)
T TIGR03436 163 PGRKALIVISDGGDNRSRDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYVNSND 242 (296)
T ss_pred CCCeEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEecccCcc
Confidence 46788999999975533 2345555666666665444322110 000000000 122346778888888877765555
Q ss_pred HHHHHHHHHHHHHHH
Q 019523 203 VLKVREVAKEAIERA 217 (339)
Q Consensus 203 ~~~v~~a~~~A~~~a 217 (339)
+.. ++..+.+..
T Consensus 243 l~~---~f~~i~~~~ 254 (296)
T TIGR03436 243 LDG---AFAQIAEEL 254 (296)
T ss_pred HHH---HHHHHHHHH
Confidence 444 444444444
No 341
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=20.73 E-value=2.3e+02 Score=28.02 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=8.0
Q ss_pred HHcCCCCEEEEEEEe
Q 019523 217 ARRGEGPTLVECETY 231 (339)
Q Consensus 217 ar~~~gP~lIev~t~ 231 (339)
+++.+.=.+|++++-
T Consensus 157 ~k~~g~l~iVDaVsS 171 (383)
T COG0075 157 AKEHGALLIVDAVSS 171 (383)
T ss_pred HHHcCCEEEEEeccc
Confidence 344455566666554
No 342
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=20.17 E-value=1.1e+02 Score=23.18 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCcccHHHHHHHHHH
Q 019523 260 TALKKYLIESSLASEAELKAIEKK 283 (339)
Q Consensus 260 ~~~~~~L~~~g~~~~~~~~~i~~~ 283 (339)
.....+|+++|++|.++.+.|+..
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~~ 42 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQAA 42 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcC
Confidence 457788999999999999988763
No 343
>PF13933 HRXXH: Putative peptidase family
Probab=20.03 E-value=2.1e+02 Score=26.34 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=17.2
Q ss_pred hhhhhhcccCCCCC--------CCCCCC--Cc-cccccCCc
Q 019523 303 RSQLLENVFADPKG--------FGIGPD--GR-YRCEDPKF 332 (339)
Q Consensus 303 ~~~~~~~v~~~~~~--------~~~~~~--~~-~~~~~~~~ 332 (339)
-+++|+-.|...+- ..++.| +- |||.||..
T Consensus 83 ~s~~f~kyFGn~~~~~viG~~d~iv~~dk~~~lfRCDDpD~ 123 (245)
T PF13933_consen 83 SSEFFRKYFGNGSTAEVIGWYDRIVEGDKSDVLFRCDDPDG 123 (245)
T ss_pred ccHHHHHhcCCCCccccchhhhhhccCCccCeEEeCCCCcc
Confidence 34566666654321 244445 33 99999964
Done!