BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019524
(339 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q944K3|HDA2_ARATH Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 PE=1 SV=2
Length = 387
Score = 519 bits (1336), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/330 (74%), Positives = 284/330 (86%), Gaps = 2/330 (0%)
Query: 2 SSSSSPSVTTDAETLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKW 61
S SS S+ T E L+R RIL+SKLYFD+P+ K+ +IYS YDISF+GIEKLHPFDSSKW
Sbjct: 41 SEISSFSMATHPEALRRERILNSKLYFDVPLSKVSIIYSSSYDISFMGIEKLHPFDSSKW 100
Query: 62 GRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFP 121
GR+C+FL S+GFL++ IVEPLEASK DLLVVHSE+YL SL+SS V+ I EV PVA FP
Sbjct: 101 GRVCKFLVSDGFLEEKAIVEPLEASKIDLLVVHSENYLNSLKSSATVARITEVAPVAFFP 160
Query: 122 NCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181
N LVQ+KVLYPFRKQVGGTILAAKLA ERGWAIN+GGGFHHC+A+ GGGFCA+ADISLCI
Sbjct: 161 NFLVQQKVLYPFRKQVGGTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCI 220
Query: 182 HYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKV 241
H+AF++L ISRVMIIDLDAHQGNGHE D D+RVYILDM+NP IYP DY ARRFIDQKV
Sbjct: 221 HFAFLRLRISRVMIIDLDAHQGNGHETDLGDDNRVYILDMYNPEIYPFDYRARRFIDQKV 280
Query: 242 EVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDE 301
EV+SGTTT+EYL+KLDEALEVA F PELVIYNAGTDIL+GDPLG+LKISPDGI +RDE
Sbjct: 281 EVMSGTTTDEYLRKLDEALEVASRNFQPELVIYNAGTDILDGDPLGLLKISPDGITSRDE 340
Query: 302 KTFRFARSRNIPIVMLTSGPI--TSEKVLA 329
K FRFAR +NIP+VMLTSG +S +V+A
Sbjct: 341 KVFRFAREKNIPLVMLTSGGYMKSSARVIA 370
>sp|Q9GKU5|HDA11_MACFA Histone deacetylase 11 OS=Macaca fascicularis GN=HDAC11 PE=2 SV=2
Length = 347
Score = 362 bits (930), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 172/299 (57%), Positives = 219/299 (73%), Gaps = 1/299 (0%)
Query: 23 SSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+++LY +P + P++YSP Y+I+F+G+EKLHPFD+ KWG++ FL E L + +VE
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEA 63
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTIL 142
EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+
Sbjct: 64 REASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIM 123
Query: 143 AAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL-NISRVMIIDLDAH 201
A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR IIDLDAH
Sbjct: 124 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 183
Query: 202 QGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALE 261
QGNGHE+DF D RVYI+D++N IYP D A++ I +KVE+ GT +EYL K++ +E
Sbjct: 184 QGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIE 243
Query: 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320
+ P++V+YNAGTDILEGD LG L ISP GI RDE FR R R++PI+M+TSG
Sbjct: 244 KSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRHVPILMVTSG 302
>sp|Q96DB2|HDA11_HUMAN Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 PE=1 SV=1
Length = 347
Score = 361 bits (926), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 171/299 (57%), Positives = 218/299 (72%), Gaps = 1/299 (0%)
Query: 23 SSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+++LY +P + P++YSP Y+I+F+G+EKLHPFD+ KWG++ FL E L + +VE
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEA 63
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTIL 142
EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+
Sbjct: 64 REASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIM 123
Query: 143 AAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL-NISRVMIIDLDAH 201
A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR IIDLDAH
Sbjct: 124 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 183
Query: 202 QGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALE 261
QGNGHE+DF D RVYI+D++N IYP D A++ I +KVE+ GT +EYL K++ ++
Sbjct: 184 QGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIK 243
Query: 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320
+ P++V+YNAGTDILEGD LG L ISP GI RDE FR R R +PI+M+TSG
Sbjct: 244 KSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSG 302
>sp|Q91WA3|HDA11_MOUSE Histone deacetylase 11 OS=Mus musculus GN=Hdac11 PE=2 SV=1
Length = 347
Score = 356 bits (913), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 170/299 (56%), Positives = 216/299 (72%), Gaps = 1/299 (0%)
Query: 23 SSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+++LY +P + P++YSP Y+I+F+G+EKLHPFD+ KWG++ FL E L +VE
Sbjct: 4 ATQLYQHVPEKRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDGMLVEA 63
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTIL 142
EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+
Sbjct: 64 REASEEDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIM 123
Query: 143 AAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL-NISRVMIIDLDAH 201
A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR IIDLDAH
Sbjct: 124 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 183
Query: 202 QGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALE 261
QGNGHE+DF D RVYI+D++N IYP D A+ I +KVE+ GT EYL+K++ +
Sbjct: 184 QGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKEAIRRKVELEWGTEDEEYLEKVERNVR 243
Query: 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320
+ P++V+YNAGTD+LEGD LG L ISP GI RDE FR R+ +IPI+M+TSG
Sbjct: 244 RSLQEHLPDVVVYNAGTDVLEGDRLGGLSISPAGIVKRDEVVFRVVRAHDIPILMVTSG 302
>sp|P28606|Y1628_SYNP2 Uncharacterized protein SYNPCC7002_A1628 OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6)
GN=SYNPCC7002_A1628 PE=3 SV=2
Length = 300
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 125/289 (43%), Gaps = 18/289 (6%)
Query: 35 LPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVH 94
P++Y PDY I + H F K+ + L +G + + +P + L +VH
Sbjct: 3 FPVVYHPDYVTP---IPEEHRFPMPKFRLLHGLLLEDGVIQPEQVYQPQLPDRAWLELVH 59
Query: 95 SESYLKSLQS---SPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERG 151
Y+ + +P I +P + +VQR + VGGTIL A+LA E G
Sbjct: 60 EPDYVTAYCQGTLTPKAQRRIGLP----WSAGVVQRTL-----TAVGGTILTAQLALEHG 110
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211
A N GG HH G GFC D+++ + R++I+DLD HQG+G F
Sbjct: 111 LACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDLDVHQGDGTAFIFQ 170
Query: 212 SDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPEL 271
D V+ M +P ++ D + + G + YL+ L LE P+L
Sbjct: 171 DDPTVFTFSMHCEVNFP---SQKQRSDLDLGLPEGLDDDGYLQILAHHLEDLLSQVKPDL 227
Query: 272 VIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320
V Y+AG D GD LG L ++ G+ R+ + P+ + G
Sbjct: 228 VFYDAGVDTHVGDRLGKLAMTNTGLYRRERLVLSTCLAAGYPVACVIGG 276
>sp|B1H369|HDAC8_XENTR Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1
Length = 369
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 125/280 (44%), Gaps = 21/280 (7%)
Query: 67 FLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCL 124
+ + G L + +V+P AS E++ H++SYL+ L S + E L +C
Sbjct: 36 LIEAYGLLKEMRVVKPKVASMEEMAAFHTDSYLQHLHKVSEEGDNDDPETLEYGLGYDCP 95
Query: 125 VQRKVLYPFRKQVGGTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181
+ + Y + VGG L A +A + AIN GG+HH DE GFC D L I
Sbjct: 96 ITEGI-YDYAAAVGGATLTAAEQLMAGKTRIAINWPGGWHHAKKDEASGFCYLNDAVLGI 154
Query: 182 HYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR----- 234
++ RV+ +D+D H G+G E FS S+V + + F+PG +P +
Sbjct: 155 --LKLREKFDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDIGLG 212
Query: 235 --RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKIS 292
R+ V + G +Y + + L+ TF+PE V+ G D + GDP+ ++
Sbjct: 213 KGRYYSVNVPLQDGIQDEKYYQICEGVLKEVFTTFNPEAVVLQLGADTIAGDPMCSFNMT 272
Query: 293 PDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALWS 332
P GI K ++ +P ++L G W+
Sbjct: 273 PQGIG----KCLKYVLQWQLPTLILGGGGYHLPNTARCWT 308
>sp|Q6GPA7|HDAC8_XENLA Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 PE=2 SV=1
Length = 325
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 21/268 (7%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
+V+P AS E++ H+++YL+ L S + E L +C + + Y +
Sbjct: 4 VVKPKVASMEEMAAFHTDAYLQHLHKVSEEGDNDDPETLEYGLGYDCPITEGI-YDYAAA 62
Query: 137 VGGTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRV 193
VGG L A + + A+N GG+HH DE GFC D L I ++ RV
Sbjct: 63 VGGATLTAAEQLIEGKTRIAVNWPGGWHHAKKDEASGFCYLNDAVLGI--LKLREKFDRV 120
Query: 194 MIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVV 244
+ +D+D H G+G E FS S+V + + F+PG +P + R+ V +
Sbjct: 121 LYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDIGLGKGRYYSINVPLQ 180
Query: 245 SGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTF 304
G ++Y + + L+ TF+PE V+ G D + GDP+ ++P+GI K
Sbjct: 181 DGIQDDKYYQICEGVLKEVFTTFNPEAVVLQLGADTIAGDPMCSFNMTPEGIG----KCL 236
Query: 305 RFARSRNIPIVMLTSGPITSEKVLALWS 332
++ +P ++L G W+
Sbjct: 237 KYVLQWQLPTLILGGGGYHLPNTARCWT 264
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 138/301 (45%), Gaps = 23/301 (7%)
Query: 37 LIYSPDYDISFLGIEK-LHPFDSSKWGRICQFLSSEGFLDKNCIVEPLE--ASKEDLLVV 93
LIY + D + +E+ HP ++ RI + L G L+K C+ E A+ E++ +V
Sbjct: 428 LIYFNEGDDAHFDLEEDNHPEKPARTRRILKTLRESGVLEK-CVDRNCERIATNEEIRLV 486
Query: 94 HSESYLKSLQSSPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-----KLA 147
H++ L+ L+++ + + F + + R L RK VG + + K A
Sbjct: 487 HTKKMLEHLRTTETMKDEELMEEAEKEFNSIYLTRDTLKVARKAVGAVLQSVDEIFEKDA 546
Query: 148 KERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207
+R + V HH SA + GFC + ++++ YA + RV+I+D D H GNG +
Sbjct: 547 GQRNALVIVRPPGHHASASKSSGFCIFNNVAVAAKYAQRRHKAKRVLILDWDVHHGNGTQ 606
Query: 208 KDFSSDSRVYILDM-------FNPGIYPRDY-EARRFIDQKVEV---VSGTTT--NEYLK 254
+ F DS V + + F P P+DY + + + V SG NEY
Sbjct: 607 EIFYEDSNVMYMSIHRHDKGNFYPIGEPKDYSDVGEGAGEGMSVNVPFSGVQMGDNEYQM 666
Query: 255 KLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPI 314
+ + F+P+LV+ +AG D DPLG K++P+ A + A R I +
Sbjct: 667 AFQRVIMPIAYQFNPDLVLISAGFDAAVDDPLGEYKVTPETFALMTYQLSSLAGGRIITV 726
Query: 315 V 315
+
Sbjct: 727 L 727
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 24/262 (9%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEP-LEASKEDLLVVHSESYLKSLQSSPNV---- 108
HP S + +I + L+ L+K ++ LE DL V H +S +K L S
Sbjct: 34 HPESSDRILKIKEALTKTKILEKCTVLTNFLEIDDADLEVTHDKSMVKDLMESEKKTQED 93
Query: 109 --SIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSAD 166
S + V + N + K + + I+A + + G+A+ G HH +
Sbjct: 94 INSQCEKYDSVFMTENSMKVAKDGVACVRDLTNRIMANEASN--GFAVVRPPG-HHADSV 150
Query: 167 EGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILD------ 220
GFC + +++ AF R++I+DLD H G+G ++ F D RV
Sbjct: 151 SPCGFCLFNNVAQAAEEAFFS-GAERILIVDLDVHHGHGTQRIFYDDKRVLYFSIHRHEH 209
Query: 221 -MFNPGIYPRDYE---ARRFIDQKVEVV---SGTTTNEYLKKLDEALEVAGHTFDPELVI 273
+F P + D++ + + + + +G T ++YL + L FDP VI
Sbjct: 210 GLFWPHLPESDFDHIGSGKGLGYNANLALNETGCTDSDYLSIIFHVLLPLATQFDPHFVI 269
Query: 274 YNAGTDILEGDPLGMLKISPDG 295
+AG D L GDPLG + ++PDG
Sbjct: 270 ISAGFDALLGDPLGGMCLTPDG 291
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1
Length = 480
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 133/312 (42%), Gaps = 19/312 (6%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVI 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320
TF P V+ G+D L GD LG ++ G A K F +S N+P++ML G
Sbjct: 246 SKVMETFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHA----KCVEFVKSFNLPMLMLGGG 301
Query: 321 PITSEKVLALWS 332
T V W+
Sbjct: 302 GYTIRNVARCWT 313
>sp|Q8VH37|HDAC8_MOUSE Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2
Length = 377
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 19/267 (7%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C +
Sbjct: 56 IVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAI 115
Query: 137 VGGTILAAK--LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVM 194
GGTI AA+ + + AIN GG+HH DE GFC D L I ++ R++
Sbjct: 116 GGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRIL 173
Query: 195 IIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVS 245
+DLD H G+G E FS S+V + + F+PG +P + R+ V +
Sbjct: 174 YVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVGLGKGRYYSVNVPIQD 233
Query: 246 GTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFR 305
G +Y + L+ F+P+ V+ G D + GDP+ ++P GI K +
Sbjct: 234 GIQDEKYYHICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLK 289
Query: 306 FARSRNIPIVMLTSGPITSEKVLALWS 332
+ + ++L G W+
Sbjct: 290 YVLQWQLATLILGGGGYNLANTARCWT 316
>sp|B1WC68|HDAC8_RAT Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1
Length = 377
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 19/267 (7%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C +
Sbjct: 56 IVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAI 115
Query: 137 VGGTILAAK--LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVM 194
GGTI AA+ + + AIN GG+HH DE GFC D L I ++ R++
Sbjct: 116 GGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRIL 173
Query: 195 IIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVS 245
+DLD H G+G E FS S+V + + F+PG +P + R+ V +
Sbjct: 174 YVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVGLGKGRYYSVNVPIQD 233
Query: 246 GTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFR 305
G +Y + L+ F+P+ V+ G D + GDP+ ++P GI K +
Sbjct: 234 GIQDEKYYHICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLK 289
Query: 306 FARSRNIPIVMLTSGPITSEKVLALWS 332
+ + ++L G W+
Sbjct: 290 YVLQWQLATLILGGGGYNLANTARCWT 316
>sp|Q7SXM0|HDAC8_DANRE Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2 SV=1
Length = 378
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 123/274 (44%), Gaps = 21/274 (7%)
Query: 38 IYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSES 97
+YSP+Y + + K+ ++ + + + G L +V+P AS E++ V H++S
Sbjct: 20 VYSPEYIQTCDSLSKV----PNRASMVHSLIEAYGLLKYMRVVKPHVASIEEMAVFHTDS 75
Query: 98 YLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK---LAKERGW 152
YL+ L S + + L +C V + + + VGG L A L +
Sbjct: 76 YLQHLHKISQDGDNDDPQSADFGLGYDCPVVEGI-FDYAAAVGGATLTAAQNLLDGKCDV 134
Query: 153 AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSS 212
AIN GG+HH DE G C D L I ++ RV+ +D+D H G+G E FS
Sbjct: 135 AINWAGGWHHAKKDEASGSCYVNDAVLGI--LKLREKYDRVLYVDVDLHHGDGVEDAFSF 192
Query: 213 DSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEALEVA 263
S+V + + F+PG +P + R+ V G + Y + ++
Sbjct: 193 TSKVMTVSLHKFSPGFFPGTGDVTDTGLGKGRWYAVNVPFEDGVRDDRYCQTFTSVMQEV 252
Query: 264 GHTFDPELVIYNAGTDILEGDPLGMLKISPDGIA 297
F+PE V+ G D + GDP+ ++P G+A
Sbjct: 253 KALFNPEAVVMQLGADTMAGDPMCSFNMTPVGVA 286
>sp|Q9BY41|HDAC8_HUMAN Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2
Length = 377
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 133/317 (41%), Gaps = 29/317 (9%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKK 255
G E FS S+V + + F+PG +P + R+ V + G +Y +
Sbjct: 184 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI 243
Query: 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIV 315
+ L+ F+P+ V+ G D + GDP+ ++P GI K ++ + +
Sbjct: 244 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLKYILQWQLATL 299
Query: 316 MLTSGPITSEKVLALWS 332
+L G W+
Sbjct: 300 ILGGGGYNLANTARCWT 316
>sp|O09106|HDAC1_MOUSE Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1
Length = 482
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 132/312 (42%), Gaps = 19/312 (6%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVM 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320
F P V+ G+D L GD LG ++ G A K F +S N+P++ML G
Sbjct: 246 SKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHA----KCVEFVKSFNLPMLMLGGG 301
Query: 321 PITSEKVLALWS 332
T V W+
Sbjct: 302 GYTIRNVARCWT 313
>sp|Q32PJ8|HDAC1_BOVIN Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1
Length = 482
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 132/312 (42%), Gaps = 19/312 (6%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVM 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320
F P V+ G+D L GD LG ++ G A K F +S N+P++ML G
Sbjct: 246 SKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHA----KCVEFVKSFNLPMLMLGGG 301
Query: 321 PITSEKVLALWS 332
T V W+
Sbjct: 302 GYTIRNVARCWT 313
>sp|Q4QQW4|HDAC1_RAT Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1
Length = 482
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 132/312 (42%), Gaps = 19/312 (6%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVM 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320
F P V+ G+D L GD LG ++ G A K F +S N+P++ML G
Sbjct: 246 SKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHA----KCVEFVKSFNLPMLMLGGG 301
Query: 321 PITSEKVLALWS 332
T V W+
Sbjct: 302 GYTIRNVARCWT 313
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1
Length = 482
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 131/309 (42%), Gaps = 19/309 (6%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ + HP + L + G K I P +A+ E++ HS+
Sbjct: 11 VCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSD 70
Query: 97 SYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKER-G 151
Y+K L+S N+S ++ + +C V + + GG++ +A KL K++
Sbjct: 71 DYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTD 130
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211
A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+ F
Sbjct: 131 IAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEEAFY 188
Query: 212 SDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEALEVA 263
+ RV + G Y RD A ++ + G Y +
Sbjct: 189 TTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKV 248
Query: 264 GHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPIT 323
F P V+ G+D L GD LG ++ G A K F +S N+P++ML G T
Sbjct: 249 MEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHA----KCVEFVKSFNLPMLMLGGGGYT 304
Query: 324 SEKVLALWS 332
V W+
Sbjct: 305 IRNVARCWT 313
>sp|Q13547|HDAC1_HUMAN Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1
Length = 482
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 131/309 (42%), Gaps = 19/309 (6%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ + HP + L + G K I P +A+ E++ HS+
Sbjct: 11 VCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSD 70
Query: 97 SYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKER-G 151
Y+K L+S N+S ++ + +C V + + GG++ +A KL K++
Sbjct: 71 DYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTD 130
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211
A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+ F
Sbjct: 131 IAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEEAFY 188
Query: 212 SDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEALEVA 263
+ RV + G Y RD A ++ + G Y +
Sbjct: 189 TTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKV 248
Query: 264 GHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPIT 323
F P V+ G+D L GD LG ++ G A K F +S N+P++ML G T
Sbjct: 249 MEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHA----KCVEFVKSFNLPMLMLGGGGYT 304
Query: 324 SEKVLALWS 332
V W+
Sbjct: 305 IRNVARCWT 313
>sp|Q55BW2|HDA12_DICDI Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1
Length = 422
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 125/301 (41%), Gaps = 22/301 (7%)
Query: 55 PFDSSKWGRIC---QFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVS 109
P+ K R+C + + G K + + A ED+L HSE Y+ L+ + N++
Sbjct: 30 PYHPMKPHRLCLTNNLVLNYGLHKKMHLYKARPADAEDMLKFHSEDYVDFLERVTPENIN 89
Query: 110 IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW--AINVGGGFHHCSADE 167
+V + +C V + GG+I A R + AIN GG HH DE
Sbjct: 90 EWKDVKRFHIGEDCPVFPGLYDYCSIYSGGSIEGALKLNHRMYDIAINWSGGLHHARKDE 149
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM------ 221
GFC DI L I ++ + +RV+ ID+D H G+G ++ F RV +
Sbjct: 150 ASGFCYVNDIVLAI-LELLKFH-ARVLYIDIDVHHGDGVQEAFYLTDRVMTVSFHKFGGD 207
Query: 222 FNPGIYPRD---YEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGT 278
F PG D + + V + G YL ++ + P +++ G
Sbjct: 208 FFPGTGDIDEIGAKTGKLYSVNVPLADGIDDKNYLNIFKPVIQGVMDYYRPSVIVLQCGA 267
Query: 279 DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALWSIRFHVF 338
D L D LG ++ G A + RF +S NIP ++L G T V W+ V
Sbjct: 268 DSLRFDRLGCFNLTIKGHA----ECVRFVKSFNIPTLVLGGGGYTVRNVARCWTYETSVC 323
Query: 339 V 339
V
Sbjct: 324 V 324
>sp|O42227|HDA1B_XENLA Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-b PE=1
SV=1
Length = 480
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 131/312 (41%), Gaps = 19/312 (6%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +AS E++
Sbjct: 8 KKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKASAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ ++N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDISVNWSGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVVYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMSVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVM 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320
F P V+ G D L GD LG ++ G A K F ++ N+P++ML G
Sbjct: 246 TKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHA----KCVEFIKTFNLPMLMLGGG 301
Query: 321 PITSEKVLALWS 332
T V W+
Sbjct: 302 GYTIRNVARCWT 313
>sp|Q9FML2|HDA6_ARATH Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1
Length = 471
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 117/276 (42%), Gaps = 21/276 (7%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQS-SP----NVSIIIEVPPVALFPNCLVQRKVLYPF 133
I P A D+ HS Y+ L S SP + S + + +C V +
Sbjct: 63 ISRPSLADASDIGRFHSPEYVDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFDFC 122
Query: 134 RKQVGGTILAA-KLAKERG-WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNIS 191
R GG+I AA KL ++ AIN GGG HH E GFC DI L I +++
Sbjct: 123 RASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGI-LELLKM-FK 180
Query: 192 RVMIIDLDAHQGNGHEKDFSSDSRVYILDM-----FNPGI-YPRDY--EARRFIDQKVEV 243
RV+ ID+D H G+G E+ F + RV + F PG + RD E ++ V +
Sbjct: 181 RVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAEKGKYYALNVPL 240
Query: 244 VSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKT 303
G + ++ + PE V+ G D L GD LG +S G A
Sbjct: 241 NDGMDDESFRSLFRPLIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHA----DC 296
Query: 304 FRFARSRNIPIVMLTSGPITSEKVLALWSIRFHVFV 339
RF RS N+P+++L G T V W V V
Sbjct: 297 LRFLRSYNVPLMVLGGGGYTIRNVARCWCYETAVAV 332
>sp|Q94517|HDAC1_DROME Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1
SV=2
Length = 521
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 132/313 (42%), Gaps = 21/313 (6%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D DI + HP + L + G K I P +A+ +++
Sbjct: 6 KKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATADEMTKF 65
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPF-RKQVGGTILAA-KLAK 148
HS+ Y++ L+S N+S ++ + +C V LY F + GG++ AA KL K
Sbjct: 66 HSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPV-FDGLYEFCQLSAGGSVAAAVKLNK 124
Query: 149 ERGW-AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207
+ IN GGG HH E GFC DI L I ++ + RV+ ID+D H G+G E
Sbjct: 125 QASEICINWGGGLHHAKKSEASGFCYVNDIVLGI-LELLKYH-QRVLYIDIDVHHGDGVE 182
Query: 208 KDFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEA 259
+ F + RV + G Y RD A ++ + + G + Y
Sbjct: 183 EAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPI 242
Query: 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319
+ TF P V+ G D L GD LG ++ G K F + N+P +M+
Sbjct: 243 ISKVMETFQPAAVVLQCGADSLTGDRLGCFNLTVKGHG----KCVEFVKKYNLPFLMVGG 298
Query: 320 GPITSEKVLALWS 332
G T V W+
Sbjct: 299 GGYTIRNVSRCWT 311
>sp|Q0VCB2|HDAC8_BOVIN Histone deacetylase 8 OS=Bos taurus GN=HDAC8 PE=2 SV=1
Length = 377
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 112/268 (41%), Gaps = 21/268 (7%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C + + +
Sbjct: 56 IVKPKVASMEEMASFHTDAYLQHLQKVSEDGDDDHPDSIEYGLGYDCPATEGI-FDYAAA 114
Query: 137 VGGTILAAKLAKERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRV 193
VGG + A G AIN GG+HH DE GFC D L I ++ R+
Sbjct: 115 VGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRI 172
Query: 194 MIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVV 244
+ +DLD H G+G E FS S+V + + F+PG +P + R+ V +
Sbjct: 173 LYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 232
Query: 245 SGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTF 304
Y + L+ F+P+ V+ G D + GDP+ ++P GI K
Sbjct: 233 DCIQDERYYHICESVLKEVYIAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCL 288
Query: 305 RFARSRNIPIVMLTSGPITSEKVLALWS 332
++ + ++L G W+
Sbjct: 289 KYILQWELATLILGGGGYNLANTARCWT 316
>sp|O17695|HDA1_CAEEL Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1
Length = 461
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 120/275 (43%), Gaps = 21/275 (7%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQSS-PN--VSIIIEVPPVALFPNCLVQRKVLYPFRK 135
I P AS ED+ HS+ Y+ L+S+ P+ S ++ + +C + LY F +
Sbjct: 57 IFRPFPASFEDMTRFHSDEYMTFLKSANPDNLKSFNKQMLKFNVGEDCPL-FDGLYEFCQ 115
Query: 136 QVGGTILAA--KLAKER-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISR 192
G LAA KL K++ AIN GG HH E GFC DI L I ++ + R
Sbjct: 116 LSSGGSLAAATKLNKQKVDIAINWMGGLHHAKKSEASGFCYTNDIVLGI-LELLKYH-KR 173
Query: 193 VMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-IYPRDYEAR-------RFIDQKVEVV 244
V+ +D+D H G+G E+ F + RV + G +P + + + V +
Sbjct: 174 VLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGTGDLKDIGAGKGKLYSVNVPLR 233
Query: 245 SGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTF 304
G T Y + FDP V+ G D L GD LG ++ G +
Sbjct: 234 DGITDVSYQSIFKPIMTKVMERFDPCAVVLQCGADSLNGDRLGPFNLTLKGHG----ECA 289
Query: 305 RFARSRNIPIVMLTSGPITSEKVLALWSIRFHVFV 339
RF RS N+P++M+ G T V W+ + V
Sbjct: 290 RFFRSYNVPLMMVGGGGYTPRNVARCWTYETSIAV 324
>sp|Q6IRL9|HDAC3_XENLA Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2
Length = 428
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 126/317 (39%), Gaps = 20/317 (6%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW- 152
Y+ LQ SPN + + +C V + + G ++ A L +
Sbjct: 65 DYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATLLNNKNCD 124
Query: 153 -AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211
AIN GG HH E GFC DI + I ++ + RV+ ID+D H G+G ++ F
Sbjct: 125 IAINWAGGLHHAKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDGVQEAFY 182
Query: 212 SDSRVYIL------DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEV 262
RV + + F PG +Y E+ R+ V + G Y ++
Sbjct: 183 LTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRHLFQPVIKQ 242
Query: 263 AGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPI 322
+ P ++ G D L D LG +S G + ++ +S NIP+++L G
Sbjct: 243 VIDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHG----ECVQYVKSFNIPLLVLGGGGY 298
Query: 323 TSEKVLALWSIRFHVFV 339
T V W+ + V
Sbjct: 299 TVRNVARCWTYETSLLV 315
>sp|Q6GFX3|ACUC_STAAR Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MRSA252) GN=acuC PE=3 SV=1
Length = 389
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 117/257 (45%), Gaps = 24/257 (9%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
+ N + + R VGG + A L G A+N +GGG HH
Sbjct: 84 DEAMKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKALNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDSSFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGMLKIS 292
G DI DPL L +
Sbjct: 259 NGVDIHYRDPLTHLNCT 275
>sp|O30107|Y130_ARCFU Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0130 PE=3 SV=1
Length = 359
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 113/260 (43%), Gaps = 28/260 (10%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIV--EPLEASKEDLLVVHSESYLKSLQSSPNVSII 111
HP + L EG + IV EP +AS ED+L VH+E Y++ L+ I
Sbjct: 20 HPERRERLAYTMDQLREEGIFESERIVLLEPFKASLEDVLEVHTEEYVRFLEMESKKGGI 79
Query: 112 IEVP---PVALFPNCLVQRKVLYPFRKQVGGTILAAK--LAKE--RGWAINVGGGFHHCS 164
I+ PV +F L+ GG I AA+ L KE +A+ G HH
Sbjct: 80 IDFDTNIPVGVFDRALLA----------AGGAIRAAQAVLNKECENAFAMIRPPG-HHAK 128
Query: 165 ADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP 224
G GFC ++++ + + Q R+ I+D DAH G+G ++ F +D RV +
Sbjct: 129 PYIGAGFCYLNNMAIMVKWLLKQ-GFERIAILDWDAHHGDGTQEIFYNDDRVLFISTHQM 187
Query: 225 GIYPRDYEARRFIDQKVEVVS-------GTTTNEYLKKLDEALEVAGHTFDPELVIYNAG 277
+YP K E + GT Y+ +DE +E + F P+ + +AG
Sbjct: 188 PLYPGTGYPEECGTGKGEGYTVNIPLPPGTGDEGYMMVIDEIIEPVVNEFKPQFIAISAG 247
Query: 278 TDILEGDPLGMLKISPDGIA 297
D DP+ L ++ G A
Sbjct: 248 QDNHFTDPITSLALTARGYA 267
>sp|P56520|HDAC3_CHICK Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1
Length = 428
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 123/317 (38%), Gaps = 20/317 (6%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--G 151
Y+ LQ SPN + + +C V + + G ++ A +
Sbjct: 65 DYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICD 124
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211
AIN GG HH E GFC DI + I ++ + RV+ ID+D H G+G ++ F
Sbjct: 125 IAINWAGGLHHAKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDGVQEAFY 182
Query: 212 SDSRVYIL------DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEV 262
RV + + F PG +Y E+ R+ V + G Y +
Sbjct: 183 LTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYALNVPLRDGIDDQSYKHLFQPVINQ 242
Query: 263 AGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPI 322
+ P ++ G D L D LG +S G + + +S NIP+++L G
Sbjct: 243 VVDYYQPTCIVLQCGADSLGRDRLGCFNLSIRGHG----ECVEYVKSFNIPLLVLGGGGY 298
Query: 323 TSEKVLALWSIRFHVFV 339
T V W+ + V
Sbjct: 299 TVRNVARCWTYETSLLV 315
>sp|O27262|Y1194_METTH Uncharacterized protein MTH_1194 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1194 PE=3 SV=1
Length = 331
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 119/268 (44%), Gaps = 27/268 (10%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+I+SP YD L + H +S + I + + S + VEP A +D+L+VHS
Sbjct: 3 IIHSPSYD---LHNHEGHVENSGRTRAILRAIESSDLSPR--FVEPGMAGIDDILMVHSS 57
Query: 97 SYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINV 156
++++ L+ + L + + + R GG +LAA+ A GW+ ++
Sbjct: 58 THVEYLE------VFAGRGGGWLDYDTYMTPESFSVARLSAGGAMLAAEEALRDGWSYSL 111
Query: 157 GGG-FHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSR 215
G HH + D GFC + +I++ I +A L +SR +++D D H GNG F D
Sbjct: 112 GRPPGHHATYDRSMGFCIFNNIAIAIEHARRNLGVSRPLVLDFDVHHGNGTSSIFYRDRD 171
Query: 216 VYILDMFNPGIYPRD-YEARRFIDQ-----------KVEVVSGTTTNEYLKKLDEALEVA 263
V + + PR + FID+ + + G+ EYL L L
Sbjct: 172 VMYISIHQD---PRTLFPGTGFIDETGSGEGEGFNLNIPMPRGSGNREYLWILGMILPAV 228
Query: 264 GHTFDPELVIYNAGTDILEGDPLGMLKI 291
F P+++ +AG D DPL + +
Sbjct: 229 LEGFRPDMIFVSAGFDAHRRDPLAEIMV 256
>sp|O22446|HDA19_ARATH Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2
Length = 501
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 123/312 (39%), Gaps = 23/312 (7%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K+ Y P+ + G + HP + L+ G L +++P A DL
Sbjct: 18 KVCYFYDPEVGNYYYG--QGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRF 75
Query: 94 HSESY---LKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER 150
H++ Y L+S+ I ++ + +C V LY F + G + +
Sbjct: 76 HADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPV-FDGLYSFCQTYAGGSVGGSVKLNH 134
Query: 151 GW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207
G AIN GG HH E GFC DI L I Q RV+ +D+D H G+G E
Sbjct: 135 GLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVE 192
Query: 208 KDFSSDSRVYILDM-----FNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEA 259
+ F + RV + + PG I Y + ++ V + G Y
Sbjct: 193 EAFYATDRVMTVSFHKFGDYFPGTGHIQDIGYGSGKYYSLNVPLDDGIDDESYHLLFKPI 252
Query: 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319
+ F P V+ G D L GD LG +S G A + +F RS N+P+++L
Sbjct: 253 MGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRSFNVPLLLLGG 308
Query: 320 GPITSEKVLALW 331
G T V W
Sbjct: 309 GGYTIRNVARCW 320
>sp|O13298|PHD1_SCHPO Histone deacetylase phd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=phd1 PE=1 SV=1
Length = 434
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 134/345 (38%), Gaps = 36/345 (10%)
Query: 6 SPSVTTDAETLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRIC 65
+P +T E +++ S + K + Y D + HP +
Sbjct: 3 TPETSTPYEQVEKGSFFSFRPQ------KKRVTYHLDEQVGNYHYGDKHPMKPHRITITN 56
Query: 66 QFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQS-SPNVS--IIIEVPPVALFPN 122
+ G +K + P A+ ++ H E YL L+ +P+ + + + +
Sbjct: 57 HLVMGYGLHNKMSVFSPRMATFGEMSEFHREDYLDFLKRVTPDNAEQFADKFQQFNIGDD 116
Query: 123 CLVQRKVLYPFRKQVGGTILAAKLAKERGW---AINVGGGFHHCSADEGGGFCAYADISL 179
C V Y F ++ G L A +G AIN GG HH E GFC DI L
Sbjct: 117 CPVFDGT-YEFSQRSAGASLDASRKLVQGQTDIAINWSGGLHHAKRGEASGFCYVNDIVL 175
Query: 180 CIHYAFVQLNI----SRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYP----- 228
I LN+ RV+ ID+D H G+G ++ F RV + +N +P
Sbjct: 176 AI------LNMLRFFPRVLYIDIDIHHGDGVQQAFYESDRVLTVSFHKYNGDFFPATGNF 229
Query: 229 --RDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPL 286
+ ++ V + G +Y +E +TF P ++ G D L D L
Sbjct: 230 DENGVKGGKYFALNVPLEDGIGDEQYTSLFKSIIEPTINTFQPSAIVLQCGADSLGYDRL 289
Query: 287 GMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALW 331
G+ +S I A E RF RS NIP++++ G T V W
Sbjct: 290 GVFNLS---IHAHGE-CVRFTRSFNIPMLVVGGGGYTLRNVARAW 330
>sp|Q4SFA0|HDAC3_TETNG Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1
Length = 428
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 121/310 (39%), Gaps = 20/310 (6%)
Query: 39 YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESY 98
Y D D+ HP + + G K + +P +AS+ D+ HSE Y
Sbjct: 7 YFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDY 66
Query: 99 LKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWA 153
+ LQ SPN + + +C V + + G ++ A + A
Sbjct: 67 IDFLQKVSPNNMQGFTKSLNTFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIA 126
Query: 154 INVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSD 213
IN GG HH E GFC DI + I ++ + RV+ ID+D H G+G ++ F
Sbjct: 127 INWAGGLHHAKKFEASGFCYVNDIVISI-LELLKYH-PRVLYIDIDIHHGDGVQEAFYLT 184
Query: 214 SRVYIL------DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAG 264
RV + + F PG +Y E+ R+ V + G Y + ++
Sbjct: 185 DRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRQLFQPVIKQVV 244
Query: 265 HTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324
+ P ++ G D L D LG +S G + F +S IP+++L G T
Sbjct: 245 DFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHG----ECVEFVKSFKIPLLVLGGGGYTV 300
Query: 325 EKVLALWSIR 334
V W+
Sbjct: 301 RNVARCWTFE 310
>sp|Q28DV3|HDAC3_XENTR Histone deacetylase 3 OS=Xenopus tropicalis GN=hdac3 PE=2 SV=1
Length = 428
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 123/310 (39%), Gaps = 20/310 (6%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--G 151
Y+ LQ SPN + + +C V + + G ++ A +
Sbjct: 65 DYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICD 124
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211
AIN GG HH E GFC DI + I ++ + RV+ +D+D H G+G ++ F
Sbjct: 125 IAINWAGGLHHAKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYVDIDIHHGDGVQEAFY 182
Query: 212 SDSRVYIL------DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEV 262
RV + + F PG +Y E+ R+ V + G Y ++
Sbjct: 183 LTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRHLFQPVIKQ 242
Query: 263 AGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPI 322
+ P ++ G D L D LG +S G + ++ +S NIP+++L G
Sbjct: 243 VIDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHG----ECVQYVKSFNIPLLVLGGGGY 298
Query: 323 TSEKVLALWS 332
T V W+
Sbjct: 299 TVRNVARCWT 308
>sp|P56521|HDA19_MAIZE Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1
Length = 513
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 30/315 (9%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
++ Y PD + G + HP + L+ G L++ + P A + +L
Sbjct: 24 RVCYFYDPDVGNYYYG--QGHPMKPHRIRMTHSLLARYGLLNQMQVYRPNPARERELCRF 81
Query: 94 HSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKV-----LYPFRKQVGGTILAAKLAK 148
H+E Y+ L+S V+ + + L V + LY F + G + +
Sbjct: 82 HAEEYINFLRS---VTPETQQDQIRLLKRFNVGEECPVLDGLYSFCQTYAGASVGGAVKF 138
Query: 149 ERGW--AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL--NISRVMIIDLDAHQGN 204
G AIN GG HH E GFC DI L I ++L + RV+ +D+D H G+
Sbjct: 139 NHGHDIAINWSGGLHHAKKCEASGFCYVNDIVLAI----LELLKHHERVLYVDIDIHHGD 194
Query: 205 GHEKDFSSDSRVYILDMFNPGIY------PRD--YEARRFIDQKVEVVSGTTTNEYLKKL 256
G E+ F + RV + G Y RD + ++ V + G Y
Sbjct: 195 GVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVPLDDGIDDESYQSLF 254
Query: 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVM 316
+ F P V+ G D L GD LG +S G A + R+ RS N+P+++
Sbjct: 255 KPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVRYMRSFNVPLLL 310
Query: 317 LTSGPITSEKVLALW 331
L G T V W
Sbjct: 311 LGGGGYTIRNVARCW 325
>sp|Q8NW34|ACUC_STAAW Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MW2) GN=acuC PE=3 SV=1
Length = 389
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 115/257 (44%), Gaps = 24/257 (9%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGMLKIS 292
G DI DPL L +
Sbjct: 259 NGVDIHYRDPLTHLNCT 275
>sp|Q6G8J2|ACUC_STAAS Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MSSA476) GN=acuC PE=3 SV=1
Length = 389
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 115/257 (44%), Gaps = 24/257 (9%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGMLKIS 292
G DI DPL L +
Sbjct: 259 NGVDIHYRDPLTHLNCT 275
>sp|Q5HF39|ACUC_STAAC Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
COL) GN=acuC PE=3 SV=1
Length = 389
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 115/257 (44%), Gaps = 24/257 (9%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGMLKIS 292
G DI DPL L +
Sbjct: 259 NGVDIHYRDPLTHLNCT 275
>sp|P64376|ACUC_STAAN Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
N315) GN=acuC PE=1 SV=1
Length = 389
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 115/257 (44%), Gaps = 24/257 (9%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGMLKIS 292
G DI DPL L +
Sbjct: 259 NGVDIHYRDPLTHLNCT 275
>sp|P64375|ACUC_STAAM Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=acuC PE=3 SV=1
Length = 389
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 115/257 (44%), Gaps = 24/257 (9%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGMLKIS 292
G DI DPL L +
Sbjct: 259 NGVDIHYRDPLTHLNCT 275
>sp|Q803C3|HDAC3_DANRE Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1
Length = 428
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 122/315 (38%), Gaps = 20/315 (6%)
Query: 39 YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESY 98
Y D D+ HP + + G K + +P +AS+ D+ HSE Y
Sbjct: 7 YFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDY 66
Query: 99 LKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWA 153
+ LQ SPN + + +C V + + G ++ A + A
Sbjct: 67 IDFLQKVSPNNMQGFTKSLNTFNVGGDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIA 126
Query: 154 INVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSD 213
IN GG HH E GFC DI + I ++ + RV+ ID+D H G+G ++ F
Sbjct: 127 INWAGGLHHAKKFEASGFCYVNDIVISI-LELLKYH-PRVLYIDIDIHHGDGVQEAFYLT 184
Query: 214 SRVYIL------DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAG 264
RV + + F PG +Y E+ R+ V + G Y + ++
Sbjct: 185 DRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRQLFQPVIKQVV 244
Query: 265 HTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324
+ P ++ G D L D LG +S G + F + IP+++L G T
Sbjct: 245 DFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHG----ECVEFVKGFKIPLLVLGGGGYTV 300
Query: 325 EKVLALWSIRFHVFV 339
V W+ + V
Sbjct: 301 RNVARCWTFETSLLV 315
>sp|Q5RB76|HDAC3_PONAB Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=2 SV=1
Length = 428
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 124/323 (38%), Gaps = 32/323 (9%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQ-----------SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK 145
Y+ LQ S N + + PV FP L + Y G T L K
Sbjct: 65 DYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPV--FPG-LFEFCSRYTGASLQGATQLNNK 121
Query: 146 LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNG 205
+ AIN GG HH E GFC DI + I ++ + RV+ ID+D H G+G
Sbjct: 122 ICD---IAINWAGGLHHAKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDG 176
Query: 206 HEKDFSSDSRVYIL------DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKL 256
++ F RV + + F PG +Y E+ R+ V + G Y
Sbjct: 177 VQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLF 236
Query: 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVM 316
+ + P ++ G D L D LG +S G + + +S NIP+++
Sbjct: 237 QPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHG----ECVEYVKSFNIPLLV 292
Query: 317 LTSGPITSEKVLALWSIRFHVFV 339
L G T V W+ + V
Sbjct: 293 LGGGGYTVRNVARCWTYETSLLV 315
>sp|O15379|HDAC3_HUMAN Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=1 SV=2
Length = 428
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 124/323 (38%), Gaps = 32/323 (9%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQ-----------SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK 145
Y+ LQ S N + + PV FP L + Y G T L K
Sbjct: 65 DYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPV--FPG-LFEFCSRYTGASLQGATQLNNK 121
Query: 146 LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNG 205
+ AIN GG HH E GFC DI + I ++ + RV+ ID+D H G+G
Sbjct: 122 ICD---IAINWAGGLHHAKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDG 176
Query: 206 HEKDFSSDSRVYIL------DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKL 256
++ F RV + + F PG +Y E+ R+ V + G Y
Sbjct: 177 VQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLF 236
Query: 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVM 316
+ + P ++ G D L D LG +S G + + +S NIP+++
Sbjct: 237 QPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHG----ECVEYVKSFNIPLLV 292
Query: 317 LTSGPITSEKVLALWSIRFHVFV 339
L G T V W+ + V
Sbjct: 293 LGGGGYTVRNVARCWTYETSLLV 315
>sp|Q6P6W3|HDAC3_RAT Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac3 PE=1 SV=1
Length = 428
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 124/323 (38%), Gaps = 32/323 (9%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQ-----------SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK 145
Y+ LQ S N + + PV FP L + Y G T L K
Sbjct: 65 DYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPV--FPG-LFEFCSRYTGASLQGATQLNNK 121
Query: 146 LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNG 205
+ AIN GG HH E GFC DI + I ++ + RV+ ID+D H G+G
Sbjct: 122 ICD---IAINWAGGLHHAKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDG 176
Query: 206 HEKDFSSDSRVYIL------DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKL 256
++ F RV + + F PG +Y E+ R+ V + G Y
Sbjct: 177 VQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLF 236
Query: 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVM 316
+ + P ++ G D L D LG +S G + + +S NIP+++
Sbjct: 237 QPVISQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHG----ECVEYVKSFNIPLLV 292
Query: 317 LTSGPITSEKVLALWSIRFHVFV 339
L G T V W+ + V
Sbjct: 293 LGGGGYTVRNVARCWTYETSLLV 315
>sp|O88895|HDAC3_MOUSE Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=1 SV=1
Length = 424
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 124/323 (38%), Gaps = 32/323 (9%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQ-----------SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK 145
Y+ LQ S N + + PV FP L + Y G T L K
Sbjct: 65 DYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPV--FPG-LFEFCSRYTGASLQGATQLNNK 121
Query: 146 LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNG 205
+ AIN GG HH E GFC DI + I ++ + RV+ ID+D H G+G
Sbjct: 122 ICD---IAINWAGGLHHAKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDG 176
Query: 206 HEKDFSSDSRVYIL------DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKL 256
++ F RV + + F PG +Y E+ R+ V + G Y
Sbjct: 177 VQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLF 236
Query: 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVM 316
+ + P ++ G D L D LG +S G + + +S NIP+++
Sbjct: 237 QPVISQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHG----ECVEYVKSFNIPLLV 292
Query: 317 LTSGPITSEKVLALWSIRFHVFV 339
L G T V W+ + V
Sbjct: 293 LGGGGYTVRNVARCWTYETSLLV 315
>sp|O59702|CLR6_SCHPO Histone deacetylase clr6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr6 PE=1 SV=1
Length = 405
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 126/315 (40%), Gaps = 25/315 (7%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ HP + + + + +K ++ P+ A++ D+
Sbjct: 5 KKKVSYFYDEDVGNYHYGPQHPMKPHRVRMVHNLVVNYNLYEKLNVITPVRATRNDMTRC 64
Query: 94 HSESYLKSL-QSSPNVSIIIEVPPVALFPNCLVQRKV---LYPFRK-QVGGTILAAKLAK 148
H++ Y++ L + +P+ + + P L N V LY F GG+I AA+
Sbjct: 65 HTDEYIEFLWRVTPDT--MEKFQPHQLKFNVGDDCPVFDGLYEFCSISAGGSIGAAQELN 122
Query: 149 ERGW--AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNI-SRVMIIDLDAHQGNG 205
AIN GG HH E GFC DI+L A L RV+ ID+D H G+G
Sbjct: 123 SGNAEIAINWAGGLHHAKKREASGFCYVNDIALA---ALELLKYHQRVLYIDIDVHHGDG 179
Query: 206 HEKDFSSDSRVYILDMFNPGIY-PRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLD 257
E+ F + RV G Y P + + V + G Y
Sbjct: 180 VEEFFYTTDRVMTCSFHKFGEYFPGTGHIKDTGIGTGKNYAVNVPLRDGIDDESYESVFK 239
Query: 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317
+ F PE VI GTD L GD LG +S G + F +S N+P++ +
Sbjct: 240 PVISHIMQWFRPEAVILQCGTDSLAGDRLGCFNLSMKGHSM----CVDFVKSFNLPMICV 295
Query: 318 TSGPITSEKVLALWS 332
G T V +W+
Sbjct: 296 GGGGYTVRNVARVWT 310
>sp|P53096|HOS2_YEAST Probable histone deacetylase HOS2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=HOS2 PE=1 SV=1
Length = 452
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 135/330 (40%), Gaps = 41/330 (12%)
Query: 31 PIFKLPLIYSPDYDISF--------LGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
P+F+ YSP F G++ HP + +SS G + E
Sbjct: 16 PLFEFNSAYSPRVSYHFNSKVSHYHYGVK--HPMKPFRLMLTDHLVSSYGLHKIMDLYET 73
Query: 83 LEASKEDLLVVHSESYLKSLQS-SPNVSIIIEVPPVALF---PNCLVQRKVLYPFRKQVG 138
A++++LL HSE Y+ L SP + + + F +C + + LY +
Sbjct: 74 RSATRDELLQFHSEDYVNFLSKVSPENANKLPRGTLENFNIGDDCPIFQN-LYDYTTLYT 132
Query: 139 GTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNI----S 191
G L A + + AIN GG HH + GFC DI L I LN+
Sbjct: 133 GASLDATRKLINNQSDIAINWSGGLHHAKKNSPSGFCYVNDIVLSI------LNLLRYHP 186
Query: 192 RVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRD-------YEARRFIDQKVE 242
R++ ID+D H G+G ++ F + RV+ L +N +P + + V
Sbjct: 187 RILYIDIDLHHGDGVQEAFYTTDRVFTLSFHKYNGEFFPGTGDLTEIGCDKGKHFALNVP 246
Query: 243 VVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEK 302
+ G + Y+ ++ TF P L++ G D L D LG ++ I A E
Sbjct: 247 LEDGIDDDSYINLFKSIVDPLIMTFKPTLIVQQCGADSLGHDRLGCFNLN---IKAHGE- 302
Query: 303 TFRFARSRNIPIVMLTSGPITSEKVLALWS 332
+F +S +P++++ G T V LW+
Sbjct: 303 CVKFVKSFGLPMLVVGGGGYTPRNVSRLWT 332
>sp|Q55FN5|HDA11_DICDI Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA
PE=2 SV=1
Length = 495
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 126/308 (40%), Gaps = 37/308 (12%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HP + + + G K I P +AS+ +L HS+ Y+ L+ ++
Sbjct: 23 HPMKPHRMRMTHDLVLNYGIYKKMQIFRPRKASELELTNFHSDDYINFLK-------LVT 75
Query: 114 VPPVALFPNCLVQRKV---------LYPFRK-QVGGTI-LAAKL-AKERGWAINVGGGFH 161
+ + LV+ V +Y F + GG+I A K+ +KE AIN GG H
Sbjct: 76 PDNMHDYSKQLVKFNVREDCPVFDGMYNFCQISSGGSIGCAVKVNSKESDVAINWAGGLH 135
Query: 162 HCSADEGGGFCAYADISLCIHYAFVQL--NISRVMIIDLDAHQGNGHEKDFSSDSRVYIL 219
H E GFC DI L I ++L + RV+ ID+D H G+G E+ F + RV +
Sbjct: 136 HAKKSEASGFCYTNDIVLSI----LELLKHHERVLYIDIDIHHGDGVEEAFYTTDRVMTV 191
Query: 220 DMFNPGIY------PRDYEAR--RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPEL 271
G Y +D A ++ + G Y + + P
Sbjct: 192 SFHKYGDYFPGTGDVKDIGADKGKYYSLNFPLKDGIDDESYQSIFRPIIRSVMDFYRPGA 251
Query: 272 VIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALW 331
V+ G D L GD LG ++ G A + F +S N+P+V+L G T + V W
Sbjct: 252 VVIQCGADSLTGDRLGCFNLTLRGHA----QCIEFLKSFNVPLVVLGGGGYTIKNVARCW 307
Query: 332 SIRFHVFV 339
+ + V
Sbjct: 308 TYETSILV 315
>sp|Q09440|HDA2_CAEEL Putative histone deacetylase 2 OS=Caenorhabditis elegans GN=hda-2
PE=3 SV=1
Length = 507
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 129/310 (41%), Gaps = 20/310 (6%)
Query: 44 DISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ 103
D+ +LHP + + S +VE + D+ V H+E Y+ LQ
Sbjct: 38 DVGHFHYGQLHPMKPQRLVVCNDLVVSYEMPKYMTVVESPKLDAADISVFHTEDYVNFLQ 97
Query: 104 S-SPNVSIIIEVPPVALF---PNCLVQRKVLYPFRKQVGGTILAAKL--AKERGWAINVG 157
+ +P + + + + F +C + + GG++ A+ K IN
Sbjct: 98 TVTPKLGLTMPDDVLRQFNIGEDCPIFAGLWDYCTLYAGGSVEGARRLNHKMNDIVINWP 157
Query: 158 GGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVY 217
GG HH E GFC DI L I ++ + RV+ ID+D H G+G ++ F++ RV
Sbjct: 158 GGLHHAKKSEASGFCYVNDIVLGI-LELLKYH-KRVLYIDIDIHHGDGVQEAFNNSDRVM 215
Query: 218 ILD-----MFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDP 269
+ + PG I + ++ V +++ YLK + + F+P
Sbjct: 216 TVSFHRFGQYFPGSGSIMDKGVGPGKYFAINVPLMAAIRDEPYLKLFESVISGVEENFNP 275
Query: 270 ELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLA 329
E ++ G+D L D LG +S + A + ++ +S P+++L G T V
Sbjct: 276 EAIVLQCGSDSLCEDRLGQFALSFNAHA----RAVKYVKSLGKPLMVLGGGGYTLRNVAR 331
Query: 330 LWSIRFHVFV 339
W++ V +
Sbjct: 332 CWALETGVIL 341
>sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1
Length = 426
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 127/317 (40%), Gaps = 26/317 (8%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K+ Y D + G HP + + + G K + P +A ++
Sbjct: 6 KISYFYDGDVGSVYFGPN--HPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEMAQF 63
Query: 94 HSESYLKSLQS-SPNVSIII--EVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER 150
HS Y++ LQ +P + E+ L +C V + + GGTI AA+ +
Sbjct: 64 HSPDYVEFLQRINPENQNLFPNEMARYNLGEDCPVFEDLFEFCQLYAGGTIDAARRLNNK 123
Query: 151 --GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL--NISRVMIIDLDAHQGNGH 206
AIN GG HH + GFC D+ L I ++L + RV+ ID+D H G+G
Sbjct: 124 LCDIAINWAGGLHHAKKCDASGFCYINDLVLGI----LELLKHHPRVLYIDIDVHHGDGV 179
Query: 207 EKDFSSDSRVYIL------DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLD 257
E+ F RV + D F PG + +F V + G + + +
Sbjct: 180 EEAFYFTDRVMTVSFHKFGDKFFPGTGDVKEIGEREGKFYAINVPLKDGIDDSSFNRLFR 239
Query: 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317
+ + P ++ G D L D LG +S DG A + +F + N+P+++
Sbjct: 240 TIISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHA----ECVKFVKKFNLPLLVT 295
Query: 318 TSGPITSEKVLALWSIR 334
G T E V W++
Sbjct: 296 GGGGYTKENVARCWTVE 312
>sp|P39067|ACUC_BACSU Acetoin utilization protein AcuC OS=Bacillus subtilis (strain 168)
GN=acuC PE=3 SV=1
Length = 387
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 117/276 (42%), Gaps = 30/276 (10%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
IYSP Y E HPF+ + L + D IV P AS+E+L +VH++
Sbjct: 6 FIYSPSYQTYMFHQE--HPFNQQRVLLTYDLLKTINAFDDGDIVTPRLASEEELSLVHTD 63
Query: 97 SYLKS--------LQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK--L 146
Y+++ L + S + +F +L VGGT+ AA +
Sbjct: 64 DYIQAVKLAGAGKLPAEEGESYGLGTEDTPVFAGMHEAASLL------VGGTLTAADWVM 117
Query: 147 AKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNIS-RVMIIDLDAHQGNG 205
+ + A N+GGG HH GFC Y D ++ I Y +Q S RV+ ID DAH G+G
Sbjct: 118 SGQALHAANLGGGLHHGFRGRASGFCIYNDSAVAIQY--IQKKYSARVLYIDTDAHHGDG 175
Query: 206 HEKDFSSDSRVYILDMFNPG--IYPRDYEARRFIDQK-------VEVVSGTTTNEYLKKL 256
+ F + V L + G ++P + + K + + + T + +L+
Sbjct: 176 VQFTFYDNPDVCTLSIHETGRYLFPGTGQIQEKGSGKGYGYSFNIPLDAFTEDDSFLEAY 235
Query: 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKIS 292
A F+P+++I G D DPL L +
Sbjct: 236 RTAASEVAAYFEPDVIISQNGADAHYYDPLTHLSAT 271
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,700,210
Number of Sequences: 539616
Number of extensions: 5543555
Number of successful extensions: 13493
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 13179
Number of HSP's gapped (non-prelim): 157
length of query: 339
length of database: 191,569,459
effective HSP length: 118
effective length of query: 221
effective length of database: 127,894,771
effective search space: 28264744391
effective search space used: 28264744391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)