Query 019524
Match_columns 339
No_of_seqs 204 out of 1443
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:27:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0123 AcuC Deacetylases, inc 100.0 4.6E-82 1E-86 610.8 30.4 296 33-336 2-307 (340)
2 PTZ00346 histone deacetylase; 100.0 3.2E-81 6.9E-86 614.4 32.0 299 32-338 19-334 (429)
3 PTZ00063 histone deacetylase; 100.0 8.5E-81 1.8E-85 614.7 32.0 299 32-338 3-316 (436)
4 PF00850 Hist_deacetyl: Histon 100.0 2.8E-80 6E-85 595.0 21.2 289 40-338 1-310 (311)
5 KOG1342 Histone deacetylase co 100.0 7.5E-68 1.6E-72 502.3 26.3 303 29-339 3-319 (425)
6 KOG1344 Predicted histone deac 100.0 1.9E-60 4.1E-65 426.8 16.2 316 21-337 2-319 (324)
7 KOG1343 Histone deacetylase co 100.0 8.1E-48 1.8E-52 401.5 19.6 262 52-325 463-742 (797)
8 KOG1343 Histone deacetylase co 100.0 1.1E-36 2.3E-41 318.3 9.4 293 32-330 28-344 (797)
9 cd01835 SGNH_hydrolase_like_3 90.2 2.1 4.5E-05 37.5 8.9 75 240-317 42-117 (193)
10 cd01828 sialate_O-acetylestera 87.4 3.4 7.5E-05 35.2 8.2 45 266-317 46-93 (169)
11 cd01822 Lysophospholipase_L1_l 87.2 4.1 8.9E-05 34.7 8.6 49 263-317 59-107 (177)
12 cd01832 SGNH_hydrolase_like_1 86.4 4.5 9.7E-05 34.9 8.5 57 255-318 55-112 (185)
13 cd04501 SGNH_hydrolase_like_4 86.3 5 0.00011 34.7 8.7 59 249-318 44-103 (183)
14 PF13472 Lipase_GDSL_2: GDSL-l 83.1 2.7 5.9E-05 35.0 5.4 69 246-319 40-109 (179)
15 cd01836 FeeA_FeeB_like SGNH_hy 82.3 6.8 0.00015 34.0 7.8 60 246-317 50-112 (191)
16 cd01825 SGNH_hydrolase_peri1 S 82.1 7 0.00015 33.7 7.7 54 259-318 47-103 (189)
17 cd01833 XynB_like SGNH_hydrola 80.5 8 0.00017 32.4 7.4 42 262-310 34-76 (157)
18 cd01838 Isoamyl_acetate_hydrol 79.1 9.5 0.00021 32.9 7.6 48 268-317 63-113 (199)
19 PRK10528 multifunctional acyl- 78.3 12 0.00025 33.1 8.0 48 263-317 66-114 (191)
20 cd01821 Rhamnogalacturan_acety 78.3 10 0.00022 33.3 7.7 48 268-317 65-113 (198)
21 cd01841 NnaC_like NnaC (CMP-Ne 75.4 16 0.00036 31.0 8.0 67 238-316 26-95 (174)
22 cd04502 SGNH_hydrolase_like_7 74.7 18 0.00038 30.9 8.0 48 263-317 45-95 (171)
23 cd01830 XynE_like SGNH_hydrola 73.3 20 0.00043 31.7 8.2 63 251-316 60-124 (204)
24 PRK13236 nitrogenase reductase 72.7 4.8 0.0001 38.5 4.2 34 177-212 22-55 (296)
25 PF09754 PAC2: PAC2 family; I 71.7 6.1 0.00013 35.7 4.5 95 178-284 13-114 (219)
26 cd01820 PAF_acetylesterase_lik 71.3 11 0.00024 33.8 6.0 47 264-317 85-134 (214)
27 KOG0121 Nuclear cap-binding pr 70.9 3.2 6.9E-05 35.3 2.2 48 161-208 70-122 (153)
28 TIGR03018 pepcterm_TyrKin exop 70.8 8.6 0.00019 34.5 5.3 24 254-277 134-157 (207)
29 CHL00073 chlN photochlorophyll 70.2 22 0.00047 36.5 8.5 66 254-333 83-156 (457)
30 cd00984 DnaB_C DnaB helicase C 70.0 17 0.00036 33.0 7.1 60 256-318 111-170 (242)
31 cd04237 AAK_NAGS-ABP AAK_NAGS- 66.5 20 0.00043 34.1 7.0 66 251-328 1-66 (280)
32 cd01829 SGNH_hydrolase_peri2 S 66.4 33 0.00072 29.8 8.0 56 263-318 54-115 (200)
33 TIGR01969 minD_arch cell divis 66.1 7.2 0.00016 35.4 3.8 20 184-204 24-43 (251)
34 cd01839 SGNH_arylesterase_like 64.2 33 0.00071 30.3 7.6 40 266-310 77-117 (208)
35 cd01834 SGNH_hydrolase_like_2 63.9 19 0.00041 30.7 5.9 50 265-317 58-110 (191)
36 TIGR00161 conserved hypothetic 61.8 94 0.002 28.8 10.4 26 174-199 26-52 (238)
37 cd00229 SGNH_hydrolase SGNH_hy 61.7 46 0.00099 27.0 7.7 56 262-322 59-117 (187)
38 PRK08760 replicative DNA helic 61.3 21 0.00045 36.8 6.4 51 259-318 330-386 (476)
39 TIGR00665 DnaB replicative DNA 61.2 24 0.00051 35.5 6.8 53 257-318 294-352 (434)
40 COG1091 RfbD dTDP-4-dehydrorha 60.5 12 0.00026 35.9 4.2 53 260-316 42-97 (281)
41 PRK05973 replicative DNA helic 59.4 21 0.00047 33.2 5.6 51 259-318 138-190 (237)
42 PRK05595 replicative DNA helic 59.2 21 0.00045 36.2 6.0 46 263-317 306-357 (444)
43 cd01122 GP4d_helicase GP4d_hel 58.3 20 0.00043 33.2 5.3 52 258-318 130-188 (271)
44 PRK09165 replicative DNA helic 57.3 28 0.0006 36.0 6.6 49 261-318 334-390 (497)
45 cd01844 SGNH_hydrolase_like_6 57.2 38 0.00082 29.1 6.6 18 262-279 51-68 (177)
46 TIGR01287 nifH nitrogenase iro 54.8 17 0.00036 34.0 4.2 22 184-207 23-44 (275)
47 cd00840 MPP_Mre11_N Mre11 nucl 54.5 93 0.002 27.4 8.9 62 249-319 23-84 (223)
48 PRK05636 replicative DNA helic 54.2 34 0.00074 35.5 6.6 49 260-317 367-421 (505)
49 COG3914 Spy Predicted O-linked 54.1 1.8E+02 0.0038 30.9 11.6 130 167-322 312-469 (620)
50 PRK10818 cell division inhibit 53.9 16 0.00034 33.9 3.9 21 186-207 28-48 (270)
51 COG1618 Predicted nucleotide k 52.9 52 0.0011 29.3 6.5 52 254-318 84-137 (179)
52 PHA02542 41 41 helicase; Provi 52.8 59 0.0013 33.5 8.0 69 245-317 280-350 (473)
53 TIGR03600 phage_DnaB phage rep 52.5 48 0.0011 33.1 7.3 49 260-317 296-350 (421)
54 PRK13232 nifH nitrogenase redu 52.4 15 0.00032 34.4 3.4 25 184-210 24-48 (273)
55 CHL00175 minD septum-site dete 51.9 18 0.00039 33.9 3.9 22 185-207 40-61 (281)
56 TIGR02855 spore_yabG sporulati 51.5 40 0.00086 32.3 6.0 60 258-322 143-208 (283)
57 PRK06321 replicative DNA helic 51.5 42 0.00091 34.5 6.8 50 259-317 327-385 (472)
58 TIGR00162 conserved hypothetic 51.3 40 0.00086 30.3 5.8 31 290-320 26-56 (188)
59 PHA02518 ParA-like protein; Pr 50.6 21 0.00046 31.3 4.0 23 184-208 24-46 (211)
60 PRK05748 replicative DNA helic 50.4 40 0.00087 34.1 6.4 49 260-317 305-361 (448)
61 PHA02546 47 endonuclease subun 50.1 99 0.0021 30.1 8.9 66 250-323 22-87 (340)
62 PRK13230 nitrogenase reductase 49.8 18 0.00039 33.9 3.6 26 182-209 22-47 (279)
63 PRK08006 replicative DNA helic 49.4 50 0.0011 33.9 6.9 46 264-318 331-383 (471)
64 PRK05279 N-acetylglutamate syn 49.1 67 0.0015 32.4 7.8 67 250-328 7-73 (441)
65 COG0420 SbcD DNA repair exonuc 48.6 79 0.0017 31.2 8.1 67 248-324 21-87 (390)
66 cd02036 MinD Bacterial cell di 48.4 24 0.00051 30.0 3.8 20 187-207 26-45 (179)
67 cd06558 crotonase-like Crotona 47.8 1.2E+02 0.0026 26.3 8.4 72 249-320 24-102 (195)
68 TIGR00619 sbcd exonuclease Sbc 47.5 1.1E+02 0.0024 28.4 8.5 64 251-323 23-86 (253)
69 cd02040 NifH NifH gene encodes 47.0 29 0.00062 32.0 4.4 21 186-208 26-46 (270)
70 PF10609 ParA: ParA/MinD ATPas 47.0 29 0.00064 27.0 3.7 55 241-319 6-61 (81)
71 PF04321 RmlD_sub_bind: RmlD s 46.1 4.2 9.1E-05 38.6 -1.4 54 260-317 43-99 (286)
72 cd01967 Nitrogenase_MoFe_alpha 45.6 1.2E+02 0.0027 29.9 9.0 58 254-324 73-131 (406)
73 PF02585 PIG-L: GlcNAc-PI de-N 45.3 37 0.00081 27.6 4.4 28 253-280 85-112 (128)
74 PF03796 DnaB_C: DnaB-like hel 45.2 39 0.00085 31.2 5.0 61 254-317 115-176 (259)
75 COG1066 Sms Predicted ATP-depe 44.9 98 0.0021 31.6 7.9 54 264-318 164-217 (456)
76 PF02310 B12-binding: B12 bind 44.5 41 0.0009 26.8 4.5 46 262-322 45-90 (121)
77 TIGR03878 thermo_KaiC_2 KaiC d 44.1 98 0.0021 28.9 7.5 53 258-319 121-174 (259)
78 TIGR01278 DPOR_BchB light-inde 43.8 46 0.001 34.5 5.7 57 254-324 71-128 (511)
79 COG0683 LivK ABC-type branched 43.4 63 0.0014 31.5 6.4 35 177-211 135-169 (366)
80 TIGR01281 DPOR_bchL light-inde 42.9 28 0.0006 32.3 3.6 21 187-209 26-46 (268)
81 KOG3022 Predicted ATPase, nucl 42.9 1.5E+02 0.0033 28.6 8.4 110 184-320 71-219 (300)
82 PF14606 Lipase_GDSL_3: GDSL-l 42.7 43 0.00092 30.0 4.6 52 260-322 51-104 (178)
83 PRK13185 chlL protochlorophyll 42.3 30 0.00064 32.1 3.7 21 187-209 28-48 (270)
84 cd08165 MPP_MPPE1 human MPPE1 42.2 1.2E+02 0.0025 26.0 7.2 16 259-274 29-44 (156)
85 cd01125 repA Hexameric Replica 42.1 87 0.0019 28.5 6.8 45 266-319 109-157 (239)
86 PRK07658 enoyl-CoA hydratase; 42.0 1.4E+02 0.0031 27.5 8.3 74 246-320 23-103 (257)
87 TIGR01968 minD_bact septum sit 41.1 33 0.00071 31.2 3.8 14 191-204 31-44 (261)
88 CHL00076 chlB photochlorophyll 40.9 1.2E+02 0.0025 31.6 8.1 58 254-324 71-129 (513)
89 cd02117 NifH_like This family 40.6 37 0.00081 30.3 4.0 23 186-210 25-47 (212)
90 PRK13234 nifH nitrogenase redu 40.4 32 0.00069 32.8 3.7 24 185-210 28-51 (295)
91 PRK07854 enoyl-CoA hydratase; 40.4 2.1E+02 0.0045 26.4 9.0 67 246-320 22-95 (243)
92 COG2047 Uncharacterized protei 40.3 61 0.0013 30.2 5.2 46 268-324 83-128 (258)
93 cd02068 radical_SAM_B12_BD B12 39.8 84 0.0018 25.6 5.7 49 258-322 29-77 (127)
94 TIGR03282 methan_mark_13 putat 39.8 1.1E+02 0.0024 30.3 7.3 56 254-324 61-118 (352)
95 PF13481 AAA_25: AAA domain; P 39.6 52 0.0011 28.5 4.7 52 262-318 134-186 (193)
96 cd03110 Fer4_NifH_child This p 39.5 22 0.00047 30.7 2.2 15 191-205 25-39 (179)
97 PF05582 Peptidase_U57: YabG p 39.1 55 0.0012 31.5 4.9 28 258-286 144-171 (287)
98 PF00464 SHMT: Serine hydroxym 38.9 98 0.0021 31.2 7.0 57 238-314 144-200 (399)
99 TIGR01279 DPOR_bchN light-inde 38.9 64 0.0014 32.3 5.7 58 254-324 70-128 (407)
100 PF00581 Rhodanese: Rhodanese- 38.8 74 0.0016 24.5 5.1 19 307-325 92-110 (113)
101 PRK06495 enoyl-CoA hydratase; 38.7 1.6E+02 0.0035 27.3 8.1 29 246-274 25-53 (257)
102 TIGR03371 cellulose_yhjQ cellu 38.6 44 0.00095 30.2 4.2 18 185-204 26-43 (246)
103 TIGR02016 BchX chlorophyllide 38.6 36 0.00079 32.5 3.8 18 185-203 24-41 (296)
104 cd03111 CpaE_like This protein 38.5 68 0.0015 25.5 4.8 14 191-204 30-43 (106)
105 TIGR01283 nifE nitrogenase mol 38.1 87 0.0019 31.8 6.6 57 255-324 108-165 (456)
106 PF02701 zf-Dof: Dof domain, z 37.9 11 0.00024 27.8 0.1 8 170-177 17-24 (63)
107 PRK09482 flap endonuclease-lik 37.4 3.1E+02 0.0067 25.9 9.7 77 253-333 31-117 (256)
108 TIGR01285 nifN nitrogenase mol 37.4 70 0.0015 32.4 5.8 61 254-324 77-139 (432)
109 PF02310 B12-binding: B12 bind 36.8 1.7E+02 0.0038 23.1 7.1 72 177-277 17-88 (121)
110 cd01827 sialate_O-acetylestera 36.6 1.2E+02 0.0026 25.9 6.5 39 266-309 65-104 (188)
111 cd01979 Pchlide_reductase_N Pc 36.2 89 0.0019 31.1 6.3 58 254-324 73-131 (396)
112 PRK06749 replicative DNA helic 36.1 98 0.0021 31.4 6.6 25 293-317 322-346 (428)
113 cd01443 Cdc25_Acr2p Cdc25 enzy 36.0 2.2E+02 0.0047 22.5 9.9 46 267-325 64-111 (113)
114 PRK08840 replicative DNA helic 35.7 97 0.0021 31.8 6.5 46 263-317 323-375 (464)
115 cd01972 Nitrogenase_VnfE_like 35.7 1.3E+02 0.0029 30.1 7.5 58 254-324 75-133 (426)
116 cd06355 PBP1_FmdD_like Peripla 35.6 46 0.00099 32.0 4.0 34 177-210 120-153 (348)
117 PF01993 MTD: methylene-5,6,7, 35.4 46 0.00099 31.4 3.6 48 257-320 48-95 (276)
118 CHL00198 accA acetyl-CoA carbo 35.4 2E+02 0.0043 28.2 8.2 30 287-318 132-161 (322)
119 PRK07773 replicative DNA helic 35.1 1.2E+02 0.0025 33.8 7.5 49 260-317 319-373 (886)
120 cd02032 Bchl_like This family 34.9 43 0.00093 31.0 3.6 20 186-207 25-44 (267)
121 TIGR01890 N-Ac-Glu-synth amino 34.8 85 0.0018 31.6 5.9 66 252-329 1-66 (429)
122 PRK00994 F420-dependent methyl 34.7 39 0.00084 31.8 3.1 47 258-320 50-96 (277)
123 PRK13233 nifH nitrogenase redu 34.4 43 0.00093 31.2 3.5 15 189-204 31-45 (275)
124 cd07384 MPP_Cdc1_like Saccharo 34.4 1.8E+02 0.0038 25.4 7.2 53 259-318 36-94 (171)
125 cd01971 Nitrogenase_VnfN_like 34.3 1E+02 0.0023 30.9 6.5 57 254-324 72-129 (427)
126 cd01976 Nitrogenase_MoFe_alpha 34.2 1.2E+02 0.0026 30.5 6.9 58 254-324 84-143 (421)
127 PRK10037 cell division protein 34.0 41 0.00089 30.9 3.3 21 184-206 25-45 (250)
128 COG4671 Predicted glycosyl tra 33.9 58 0.0013 32.5 4.3 29 247-275 85-113 (400)
129 PF02075 RuvC: Crossover junct 33.5 1.4E+02 0.0029 25.6 6.2 65 244-316 34-99 (149)
130 COG0299 PurN Folate-dependent 33.5 49 0.0011 30.1 3.5 25 253-278 64-88 (200)
131 TIGR03877 thermo_KaiC_1 KaiC d 33.3 1.5E+02 0.0032 27.1 6.8 55 256-319 114-169 (237)
132 COG1891 Uncharacterized protei 32.9 84 0.0018 28.3 4.8 38 249-287 94-132 (235)
133 cd01981 Pchlide_reductase_B Pc 32.8 97 0.0021 31.1 6.0 57 255-324 72-129 (430)
134 PRK14476 nitrogenase molybdenu 32.8 1.2E+02 0.0026 30.9 6.7 61 254-324 78-140 (455)
135 COG2755 TesA Lysophospholipase 32.7 1.6E+02 0.0035 25.8 6.9 47 262-311 70-118 (216)
136 KOG1432 Predicted DNA repair e 32.7 1.3E+02 0.0029 29.8 6.5 53 260-321 92-144 (379)
137 PRK13235 nifH nitrogenase redu 32.5 51 0.0011 30.7 3.6 23 181-204 21-43 (274)
138 cd06361 PBP1_GPC6A_like Ligand 32.2 4.5E+02 0.0096 26.0 10.5 102 184-323 166-270 (403)
139 cd07368 PhnC_Bs_like PhnC is a 32.1 1.4E+02 0.0031 28.2 6.7 75 249-324 28-122 (277)
140 PRK00039 ruvC Holliday junctio 32.0 3.2E+02 0.0069 23.9 8.3 56 253-316 46-102 (164)
141 cd00529 RuvC_resolvase Hollida 31.9 2.9E+02 0.0062 23.6 8.0 57 253-317 44-101 (154)
142 PRK04328 hypothetical protein; 31.9 1.5E+02 0.0032 27.5 6.6 55 256-319 116-171 (249)
143 PF07355 GRDB: Glycine/sarcosi 31.8 1.4E+02 0.003 29.6 6.6 59 247-318 56-118 (349)
144 PRK05724 acetyl-CoA carboxylas 31.3 2.4E+02 0.0052 27.6 8.1 31 291-322 132-163 (319)
145 cd02065 B12-binding_like B12 b 31.1 2.1E+02 0.0045 22.6 6.7 13 265-277 47-59 (125)
146 cd07402 MPP_GpdQ Enterobacter 30.8 1E+02 0.0022 27.7 5.2 60 249-323 20-81 (240)
147 PRK07004 replicative DNA helic 30.8 86 0.0019 32.1 5.2 45 264-317 319-370 (460)
148 PF06925 MGDG_synth: Monogalac 30.6 55 0.0012 28.2 3.3 24 251-274 72-95 (169)
149 cd01968 Nitrogenase_NifE_I Nit 30.4 95 0.0021 31.0 5.4 57 255-324 73-130 (410)
150 cd07373 2A5CPDO_A The alpha su 30.3 1.4E+02 0.0031 28.1 6.3 72 242-317 13-110 (271)
151 PLN02267 enoyl-CoA hydratase/i 30.0 2.5E+02 0.0055 25.8 7.8 67 249-320 24-103 (239)
152 PF13277 YmdB: YmdB-like prote 29.9 1.3E+02 0.0029 28.4 5.9 41 253-299 12-52 (253)
153 cd02067 B12-binding B12 bindin 29.8 1.3E+02 0.0029 24.0 5.3 15 263-277 45-59 (119)
154 TIGR03453 partition_RepA plasm 29.4 59 0.0013 32.2 3.7 19 187-207 131-149 (387)
155 TIGR01007 eps_fam capsular exo 29.4 62 0.0013 28.6 3.5 15 188-203 45-59 (204)
156 cd01121 Sms Sms (bacterial rad 29.4 1.2E+02 0.0026 30.1 5.9 46 264-318 154-207 (372)
157 TIGR01282 nifD nitrogenase mol 29.4 85 0.0019 32.2 4.9 57 254-323 117-175 (466)
158 PF03266 NTPase_1: NTPase; In 29.3 18 0.0004 31.7 0.0 54 254-320 79-134 (168)
159 COG0707 MurG UDP-N-acetylgluco 29.2 5.7E+02 0.012 25.2 11.0 15 260-274 83-97 (357)
160 cd02071 MM_CoA_mut_B12_BD meth 29.2 2.3E+02 0.005 23.0 6.7 15 263-277 45-59 (122)
161 PRK14478 nitrogenase molybdenu 29.1 1.3E+02 0.0029 30.8 6.3 57 255-324 106-163 (475)
162 TIGR03029 EpsG chain length de 29.0 65 0.0014 29.9 3.7 16 188-204 131-146 (274)
163 TIGR03167 tRNA_sel_U_synt tRNA 28.9 2.1E+02 0.0045 27.8 7.2 23 303-326 91-113 (311)
164 cd02037 MRP-like MRP (Multiple 28.9 60 0.0013 27.7 3.2 15 187-202 26-40 (169)
165 PRK06904 replicative DNA helic 28.7 1.8E+02 0.0039 29.9 7.1 41 268-317 334-380 (472)
166 KOG3838 Mannose lectin ERGIC-5 28.4 45 0.00098 33.5 2.5 23 201-223 167-207 (497)
167 KOG4184 Predicted sugar kinase 28.4 48 0.001 33.0 2.7 22 253-275 224-245 (478)
168 cd07369 PydA_Rs_like PydA is a 28.4 1.8E+02 0.0039 28.6 6.7 74 250-324 29-127 (329)
169 PRK06688 enoyl-CoA hydratase; 27.9 2.8E+02 0.0062 25.5 7.8 71 247-320 28-105 (259)
170 cd07367 CarBb CarBb is the B s 27.8 3.2E+02 0.0069 25.7 8.2 82 241-323 13-116 (268)
171 CHL00202 argB acetylglutamate 27.7 2.7E+02 0.0059 26.4 7.8 66 251-327 6-71 (284)
172 TIGR03446 mycothiol_Mca mycoth 27.7 63 0.0014 30.9 3.4 19 256-274 109-127 (283)
173 TIGR01917 gly_red_sel_B glycin 27.5 1.8E+02 0.0039 29.6 6.6 59 247-318 52-114 (431)
174 TIGR01918 various_sel_PB selen 27.5 1.8E+02 0.004 29.6 6.7 59 247-318 52-114 (431)
175 PF09383 NIL: NIL domain; Int 27.3 10 0.00022 28.4 -1.7 54 259-312 18-71 (76)
176 cd01831 Endoglucanase_E_like E 27.3 2E+02 0.0043 24.3 6.2 37 269-310 56-93 (169)
177 cd04506 SGNH_hydrolase_YpmR_li 27.0 87 0.0019 27.3 4.0 51 267-317 67-127 (204)
178 TIGR03815 CpaE_hom_Actino heli 26.9 71 0.0015 30.6 3.7 14 191-204 123-136 (322)
179 PF00148 Oxidored_nitro: Nitro 26.7 2.1E+02 0.0046 28.1 7.1 56 254-322 60-116 (398)
180 CHL00072 chlL photochlorophyll 26.6 66 0.0014 30.7 3.3 23 183-207 22-44 (290)
181 PF01120 Alpha_L_fucos: Alpha- 26.4 4.8E+02 0.01 25.5 9.4 31 250-280 187-218 (346)
182 TIGR02655 circ_KaiC circadian 26.3 1.7E+02 0.0036 30.1 6.4 49 262-319 347-397 (484)
183 PRK08258 enoyl-CoA hydratase; 26.1 4E+02 0.0087 24.9 8.6 70 249-320 42-122 (277)
184 TIGR03407 urea_ABC_UrtA urea A 25.9 72 0.0016 30.8 3.5 34 177-210 121-154 (359)
185 cd01965 Nitrogenase_MoFe_beta_ 25.9 2.4E+02 0.0051 28.3 7.3 58 254-324 67-129 (428)
186 PRK05409 hypothetical protein; 25.7 5.2E+02 0.011 24.8 9.2 100 209-315 21-138 (281)
187 TIGR00416 sms DNA repair prote 25.4 1.9E+02 0.0041 29.6 6.6 48 262-318 164-219 (454)
188 cd02033 BchX Chlorophyllide re 25.4 73 0.0016 31.2 3.4 20 191-211 60-79 (329)
189 PRK13869 plasmid-partitioning 25.3 75 0.0016 31.9 3.6 44 59-104 24-70 (405)
190 PRK08506 replicative DNA helic 25.2 2.4E+02 0.0053 28.9 7.3 25 293-317 324-348 (472)
191 PRK11423 methylmalonyl-CoA dec 25.1 3.3E+02 0.0072 25.3 7.8 29 246-275 26-54 (261)
192 PF06866 DUF1256: Protein of u 24.8 1.5E+02 0.0033 26.1 5.0 41 249-289 5-45 (163)
193 TIGR03445 mycothiol_MshB 1D-my 24.7 89 0.0019 29.9 3.8 27 256-282 111-139 (284)
194 TIGR02707 butyr_kinase butyrat 24.6 3.3E+02 0.0071 26.8 7.9 52 167-222 147-201 (351)
195 KOG1069 Exosomal 3'-5' exoribo 24.4 1.3E+02 0.0029 27.5 4.6 49 200-253 15-67 (217)
196 COG1692 Calcineurin-like phosp 24.4 1.6E+02 0.0035 27.9 5.3 57 253-323 15-71 (266)
197 COG2845 Uncharacterized protei 24.2 2.6E+02 0.0055 27.6 6.7 110 190-319 116-234 (354)
198 cd01824 Phospholipase_B_like P 24.1 5.8E+02 0.013 24.2 9.3 86 239-326 85-177 (288)
199 PF13050 DUF3911: Protein of u 24.1 30 0.00064 25.8 0.3 9 169-177 26-34 (77)
200 cd01826 acyloxyacyl_hydrolase_ 24.0 2.3E+02 0.0049 27.6 6.4 45 267-311 121-166 (305)
201 PRK11823 DNA repair protein Ra 24.0 1.9E+02 0.0042 29.4 6.3 55 263-318 151-205 (446)
202 PF00977 His_biosynth: Histidi 24.0 1E+02 0.0022 28.3 4.0 49 150-205 10-59 (229)
203 PRK10966 exonuclease subunit S 24.0 4.2E+02 0.0091 26.6 8.7 23 251-274 23-45 (407)
204 PRK13231 nitrogenase reductase 23.8 56 0.0012 30.2 2.2 21 185-208 26-46 (264)
205 PRK13363 protocatechuate 4,5-d 23.6 3.7E+02 0.0081 26.4 8.0 25 295-319 153-177 (335)
206 TIGR03189 dienoyl_CoA_hyt cycl 23.5 5.4E+02 0.012 23.7 8.8 26 247-274 23-50 (251)
207 cd01393 recA_like RecA is a b 23.4 2.8E+02 0.0062 24.5 6.8 60 249-318 96-166 (226)
208 PRK10812 putative DNAse; Provi 23.3 6.2E+02 0.013 23.7 12.3 113 176-322 21-135 (265)
209 cd01518 RHOD_YceA Member of th 23.3 2E+02 0.0044 22.0 5.1 18 308-325 82-99 (101)
210 PRK11670 antiporter inner memb 23.3 92 0.002 30.9 3.7 24 185-210 132-155 (369)
211 PF02350 Epimerase_2: UDP-N-ac 23.3 2.8E+02 0.006 27.1 7.1 26 249-274 48-73 (346)
212 cd00316 Oxidoreductase_nitroge 23.2 2.6E+02 0.0056 27.3 6.9 55 257-324 69-124 (399)
213 PF00378 ECH: Enoyl-CoA hydrat 22.9 2.8E+02 0.006 25.2 6.7 73 244-320 18-99 (245)
214 COG4178 ABC-type uncharacteriz 22.8 4E+02 0.0086 28.5 8.4 21 239-259 476-497 (604)
215 PF06564 YhjQ: YhjQ protein; 22.8 88 0.0019 29.4 3.3 24 176-200 17-40 (243)
216 TIGR00583 mre11 DNA repair pro 22.4 4.2E+02 0.0091 26.7 8.3 49 249-305 24-72 (405)
217 PRK02842 light-independent pro 22.3 2.2E+02 0.0048 28.6 6.4 58 254-324 82-142 (427)
218 PRK13365 protocatechuate 4,5-d 22.2 2.4E+02 0.0052 26.8 6.3 74 250-324 31-125 (279)
219 cd07396 MPP_Nbla03831 Homo sap 22.2 1.8E+02 0.0038 27.0 5.3 55 254-319 27-81 (267)
220 cd06343 PBP1_ABC_ligand_bindin 22.1 5.9E+02 0.013 24.1 9.1 33 178-210 132-164 (362)
221 PRK10425 DNase TatD; Provision 22.0 6.5E+02 0.014 23.4 10.8 110 175-316 15-126 (258)
222 TIGR02280 PaaB1 phenylacetate 21.8 4.5E+02 0.0098 24.2 7.9 73 247-320 22-102 (256)
223 cd01123 Rad51_DMC1_radA Rad51_ 21.8 1.9E+02 0.0041 25.8 5.3 59 250-318 97-167 (235)
224 cd01974 Nitrogenase_MoFe_beta 21.7 2.5E+02 0.0053 28.4 6.5 31 254-284 71-102 (435)
225 PF01656 CbiA: CobQ/CobB/MinD/ 21.6 1.1E+02 0.0023 26.2 3.5 12 191-202 28-39 (195)
226 PRK07577 short chain dehydroge 21.5 2.2E+02 0.0048 25.0 5.6 22 257-278 57-78 (234)
227 PLN02825 amino-acid N-acetyltr 21.5 2.8E+02 0.006 29.0 6.9 67 252-330 1-67 (515)
228 PRK11148 cyclic 3',5'-adenosin 21.5 2.1E+02 0.0046 26.6 5.7 54 253-319 39-93 (275)
229 TIGR02026 BchE magnesium-proto 21.4 1.8E+02 0.0038 30.0 5.5 45 262-322 57-101 (497)
230 PRK06023 enoyl-CoA hydratase; 21.3 3.7E+02 0.0081 24.7 7.2 67 247-320 29-106 (251)
231 cd01822 Lysophospholipase_L1_l 21.3 4.8E+02 0.01 21.6 8.4 60 247-316 81-140 (177)
232 cd08164 MPP_Ted1 Saccharomyces 21.2 4.1E+02 0.0089 24.0 7.2 50 248-307 27-76 (193)
233 PRK08138 enoyl-CoA hydratase; 21.2 4.8E+02 0.011 24.1 8.0 27 246-274 30-58 (261)
234 cd01966 Nitrogenase_NifN_1 Nit 21.1 4.4E+02 0.0095 26.5 8.2 61 254-324 67-129 (417)
235 cd06334 PBP1_ABC_ligand_bindin 21.1 1.8E+02 0.004 28.0 5.3 34 178-211 124-161 (351)
236 PRK06200 2,3-dihydroxy-2,3-dih 20.9 4.6E+02 0.0099 23.6 7.7 55 263-318 74-142 (263)
237 PRK07327 enoyl-CoA hydratase; 20.9 4.3E+02 0.0092 24.6 7.6 27 248-274 36-62 (268)
238 cd07372 2A5CPDO_B The beta sub 20.8 2.3E+02 0.005 27.2 5.9 67 250-317 33-118 (294)
239 PF14639 YqgF: Holliday-juncti 20.8 75 0.0016 27.5 2.2 27 249-275 44-70 (150)
240 COG0489 Mrp ATPases involved i 20.7 1.2E+02 0.0025 28.7 3.7 14 191-204 87-100 (265)
241 PRK06182 short chain dehydroge 20.6 2.6E+02 0.0056 25.5 6.0 52 267-318 73-132 (273)
242 TIGR03568 NeuC_NnaA UDP-N-acet 20.5 2.1E+02 0.0045 28.1 5.6 26 250-275 75-100 (365)
243 cd08163 MPP_Cdc1 Saccharomyces 20.4 3.2E+02 0.007 25.5 6.6 19 257-275 34-52 (257)
244 PLN02160 thiosulfate sulfurtra 20.3 2.3E+02 0.0051 23.6 5.2 19 307-325 101-119 (136)
245 COG0825 AccA Acetyl-CoA carbox 20.2 2.6E+02 0.0057 27.1 5.9 43 292-335 132-184 (317)
No 1
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.6e-82 Score=610.80 Aligned_cols=296 Identities=28% Similarity=0.404 Sum_probs=269.2
Q ss_pred CcceEEECcccCcccCCCCCCCCCCChHHHHHHHHHHHCCCCCCCeeeCCCCCCHHHHhccCChhHHHHhhcCCCccccc
Q 019524 33 FKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIII 112 (339)
Q Consensus 33 ~~~~ivy~~~~~~h~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~~~~~ 112 (339)
|++.++||+.+..|.. +..|||+|+|++.+.++|++.++...+++++|++++.++|++||+++||++|++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~--~~~Hpe~p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~~-- 77 (340)
T COG0123 2 MKTALIYHPEFLEHEP--PPGHPENPDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESLSEEEG-- 77 (340)
T ss_pred CcceEeeCHHHhcCCC--CCCCCCChHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHhccccc--
Confidence 6788999999998864 479999999999999999999988888999999999999999999999999999876411
Q ss_pred cCCCccccCCccccccchHHHHHHhcHHHHHHHHhhhh--cceeeccCCCCCCCCCCCCcccccchHHHHHHHHHHHcCC
Q 019524 113 EVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNI 190 (339)
Q Consensus 113 e~~~~~~~~~~~~~~~~~~~a~~aagg~l~aa~~~~~~--~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l~~~~~~ 190 (339)
...++.||++++++++++++++|++++|++.+++. ..++++.||||||++++++|||+|||+||||++|+++ +.
T Consensus 78 ---~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~-~~ 153 (340)
T COG0123 78 ---YGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGEDNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKK-GV 153 (340)
T ss_pred ---cccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCccceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHc-CC
Confidence 24578899999999999999999999999999875 4555555556999999999999999999999999998 88
Q ss_pred CeEEEEeccCcCCcchhhhhcCCCcEEEEEeeCC--CCCCCCccc------CCccccccccCCCCChHHHHHHHHHHHHH
Q 019524 191 SRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP--GIYPRDYEA------RRFIDQKVEVVSGTTTNEYLKKLDEALEV 262 (339)
Q Consensus 191 ~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~--~~yP~tg~~------~~~~~~NvPL~~g~~d~~yl~a~~~~l~p 262 (339)
+||+|||||||||||||+|||+|++|+|+|+|+. ++|||||.. ++++++|||||+|++|++|+.+|+.++.|
T Consensus 154 ~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~~g~~vNiPLp~g~~d~~y~~a~~~~v~~ 233 (340)
T COG0123 154 KRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGKEGNNVNIPLPPGTGDDSYLEALEEIVLP 233 (340)
T ss_pred CcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCCCCCcCCCccccccCcccceEeeecCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999995 799999752 24689999999999999999999999999
Q ss_pred HHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCChhHHHHHHHHHhh
Q 019524 263 AGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALWSIRFH 336 (339)
Q Consensus 263 ~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~~~~~a~~~~~~~ 336 (339)
++++|+||+||||||||+|.+||||.|+||+++|.++++++++++..+++|+++||||||+...+...|+..+.
T Consensus 234 ~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~~~~~ 307 (340)
T COG0123 234 LLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLVAFLA 307 (340)
T ss_pred HHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999999755555555443
No 2
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=3.2e-81 Score=614.45 Aligned_cols=299 Identities=26% Similarity=0.414 Sum_probs=263.7
Q ss_pred CCcceEE----ECcccCcccCCCCCCCCCCChHHHHHHHHHHHCCCCCCCeeeCCCCCCHHHHhccCChhHHHHhhcCCC
Q 019524 32 IFKLPLI----YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPN 107 (339)
Q Consensus 32 ~~~~~iv----y~~~~~~h~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~ 107 (339)
+.++.+| |.+++..+.+ +++|||+|+|++.++++|++.|+.+.+.+++|++|+.++|++||+++||++|++...
T Consensus 19 ~~~~~~~~~~~y~~~~~~~~~--~~~HPe~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~l~~~~~ 96 (429)
T PTZ00346 19 RGRVALIDTSGYASDMNISAF--VPQHAMKPYRVLAAMEIVRSLKIDAHCRTVVPPLVKVEELMAYHTDTYLANLGLHSC 96 (429)
T ss_pred cceeEEEecCccccccccccC--CCcCCCCHHHHHHHHHHHHhcCCcccCeeecCCCCCHHHHHHhCCHHHHHHHHHhcc
Confidence 3567789 5555555544 468999999999999999999999889999999999999999999999999986422
Q ss_pred ccc--cccCCCccccCCccccccchHHHHHHhcHHHHHHHHhhhh--cceeeccCCCCCCCCCCCCcccccchHHHHHHH
Q 019524 108 VSI--IIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHY 183 (339)
Q Consensus 108 ~~~--~~e~~~~~~~~~~~~~~~~~~~a~~aagg~l~aa~~~~~~--~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~ 183 (339)
... ..+.....+++||++++++++++++++||++.|++.++++ ++|++|+||+|||++++++|||+|||+||||++
T Consensus 97 ~~~~~~~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~~ 176 (429)
T PTZ00346 97 RSWLWNAETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVDVAVHWGGGMHHSKCGECSGFCYVNDIVLGILE 176 (429)
T ss_pred cccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCcCcCCCCCCCcchHHhHHHHHHHH
Confidence 110 0111223466899999999999999999999999999854 589999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEeccCcCCcchhhhhcCCCcEEEEEeeCCC--CCCCCccc-------CCccccccccCCCCChHHHHH
Q 019524 184 AFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEA-------RRFIDQKVEVVSGTTTNEYLK 254 (339)
Q Consensus 184 l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~--~yP~tg~~-------~~~~~~NvPL~~g~~d~~yl~ 254 (339)
|+++ .+||+|||||||||||||+|||+||+|||+|+|+.+ |||+||.. ++++++|||||+|++|++|+.
T Consensus 177 ll~~--~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~Yl~ 254 (429)
T PTZ00346 177 LLKC--HDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGESFFPGTGHPRDVGYGRGRYYSMNLAVWDGITDFYYLG 254 (429)
T ss_pred HHHc--CCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCCCCCCCCCCccccCCCCCceeEEeeeCCCCcCHHHHHH
Confidence 9986 479999999999999999999999999999999875 99999852 345899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCChhHHHHHHHHH
Q 019524 255 KLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALWSIR 334 (339)
Q Consensus 255 a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~~~~~a~~~~~ 334 (339)
+|+++|.|++++|+||+||||||||+|++||||.|+||.+||.++++.++ ++++|++++|||||+...+..+|+..
T Consensus 255 ~f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~----~~~~plv~vleGGY~~~~lar~w~~~ 330 (429)
T PTZ00346 255 LFEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVR----DLGIPMLALGGGGYTIRNVAKLWAYE 330 (429)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHH----hcCCCEEEEeCCcCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887764 46899999999999998899999988
Q ss_pred hhhc
Q 019524 335 FHVF 338 (339)
Q Consensus 335 ~~~~ 338 (339)
+.++
T Consensus 331 t~~l 334 (429)
T PTZ00346 331 TSIL 334 (429)
T ss_pred HHHH
Confidence 7664
No 3
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=8.5e-81 Score=614.72 Aligned_cols=299 Identities=24% Similarity=0.410 Sum_probs=268.3
Q ss_pred CCcceEEECcccCcccCCCCCCCCCCChHHHHHHHHHHHCCCCCCCeeeCCCCCCHHHHhccCChhHHHHhhcCCCcccc
Q 019524 32 IFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSII 111 (339)
Q Consensus 32 ~~~~~ivy~~~~~~h~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~~~~ 111 (339)
++++.++|+|+|..|.++ .+|||+|.|++.++++|+++|+.+.+++++|++|+.++|++||+++||++|++.......
T Consensus 3 ~~~v~~~yd~~~~~h~~g--~~HP~~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~ 80 (436)
T PTZ00063 3 RKRVSYFYDPDIGSYYYG--PGHPMKPQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYR 80 (436)
T ss_pred CceEEEEECccccCcCCc--CcCCcChHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhcc
Confidence 567999999999999765 689999999999999999999999999999999999999999999999999876543210
Q ss_pred ---ccCCCcccc--CCccccccchHHHHHHhcHHHHHHHHhhh--hcceeeccCCCCCCCCCCCCcccccchHHHHHHHH
Q 019524 112 ---IEVPPVALF--PNCLVQRKVLYPFRKQVGGTILAAKLAKE--RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYA 184 (339)
Q Consensus 112 ---~e~~~~~~~--~~~~~~~~~~~~a~~aagg~l~aa~~~~~--~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l 184 (339)
.......+. +||++++++++.+++++||++.||+.+++ .++|+||+||+|||++++++|||+|||+||||++|
T Consensus 81 ~~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~~L 160 (436)
T PTZ00063 81 DFTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKRSEASGFCYINDIVLGILEL 160 (436)
T ss_pred cchhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCCCCceeeecHHHHHHHHH
Confidence 001111223 59999999999999999999999999876 35899999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEeccCcCCcchhhhhcCCCcEEEEEeeCCC-CCCCCccc-------CCccccccccCCCCChHHHHHHH
Q 019524 185 FVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-IYPRDYEA-------RRFIDQKVEVVSGTTTNEYLKKL 256 (339)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~-~yP~tg~~-------~~~~~~NvPL~~g~~d~~yl~a~ 256 (339)
++++ +||+|||||||||||||+|||+||+|+|+|+|+.+ |||+||.. ++++++|||||+|++|++|+.+|
T Consensus 161 ~~~~--~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~~ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~Y~~~f 238 (436)
T PTZ00063 161 LKYH--ARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFGDFFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDSFVDLF 238 (436)
T ss_pred HHhC--CeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCCCcCCCCCCccccCCCCCCceEEEeeCCCCCCHHHHHHHH
Confidence 9864 79999999999999999999999999999999976 99999752 34679999999999999999999
Q ss_pred HHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCChhHHHHHHHHHhh
Q 019524 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALWSIRFH 336 (339)
Q Consensus 257 ~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~~~~~a~~~~~~~ 336 (339)
+++|.|++++|+||+||+|||||+|.+||||.|+||.+||.++.+. ++++++|+++++||||+...+..+|+..+.
T Consensus 239 ~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~----~~~~~~pil~l~gGGY~~~~lar~w~~~t~ 314 (436)
T PTZ00063 239 KPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEF----VRSLNIPLLVLGGGGYTIRNVARCWAYETG 314 (436)
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHH----HHhcCCCEEEEeCccCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986554 456789999999999999999999998887
Q ss_pred hc
Q 019524 337 VF 338 (339)
Q Consensus 337 ~~ 338 (339)
++
T Consensus 315 ~~ 316 (436)
T PTZ00063 315 VI 316 (436)
T ss_pred HH
Confidence 65
No 4
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=2.8e-80 Score=595.03 Aligned_cols=289 Identities=27% Similarity=0.468 Sum_probs=231.1
Q ss_pred CcccCcccCCCCCCCCCCChHHHHHHHHHHHC-CCCCCCeeeCCCCCCHHHHhccCChhHHHHhhcCCCcccccc-C---
Q 019524 40 SPDYDISFLGIEKLHPFDSSKWGRICQFLSSE-GFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE-V--- 114 (339)
Q Consensus 40 ~~~~~~h~~~~~~~HPe~p~R~~~i~~~L~~~-gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~~~~~e-~--- 114 (339)
||.|. + ..++.|||+|+|++.+.+.|++. ++++. ++++.++|++|||++||++|++.+......+ .
T Consensus 1 ~~~~~-~--~~~~~Hpe~p~R~~~i~~~L~~~~~l~~~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~ 71 (311)
T PF00850_consen 1 HPQYQ-H--QLGDGHPESPERLESIVEALKESYGLLPR------RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSP 71 (311)
T ss_dssp ----T-T---CCTTSSSCTHHHHHHHHHHHHTTTGGGG----------HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHH
T ss_pred CCccc-C--CCCCCcCCCHHHHHHHHHHHHHhcCCCCC------CCCCHHHHHHcCCHHHHHHHHHhccccccccccccc
Confidence 57777 3 35679999999999999999986 77643 8899999999999999999987654322111 0
Q ss_pred --CCccccCCccccccchHHHHHHhcHHHHHHHHhhh----hcceeeccCCCCCCCCCCCCcccccchHHHHHHHHHHHc
Q 019524 115 --PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE----RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL 188 (339)
Q Consensus 115 --~~~~~~~~~~~~~~~~~~a~~aagg~l~aa~~~~~----~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l~~~~ 188 (339)
....-+.||++++++++++++++|+++.|++.+++ ++||+++||| |||.+++++|||+||||||||++|++++
T Consensus 72 ~~~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rppg-HHA~~~~a~GFC~~Nnvaiaa~~l~~~~ 150 (311)
T PF00850_consen 72 EFPNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPPG-HHAERDRAMGFCYFNNVAIAAKYLRKKY 150 (311)
T ss_dssp HHCCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS---TT-BTTBBBTTBSS-HHHHHHHHHHHTT
T ss_pred ccccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCccc-cccCcCcCcceeeeccHHHHHHHHhhcc
Confidence 00001579999999999999999999999999984 4789996665 9999999999999999999999999988
Q ss_pred CCCeEEEEeccCcCCcchhhhhcCCCcEEEEEeeC--CCCCC-CCccc-------CCccccccccCCCCChHHHHHHHHH
Q 019524 189 NISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFN--PGIYP-RDYEA-------RRFIDQKVEVVSGTTTNEYLKKLDE 258 (339)
Q Consensus 189 ~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~--~~~yP-~tg~~-------~~~~~~NvPL~~g~~d~~yl~a~~~ 258 (339)
+++||+|||||||||||||+|||+||+|+|+|+|+ .++|| +||.. ++++++|||||+|++|++|+.+|++
T Consensus 151 ~~~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~yP~~tG~~~e~G~~~g~g~~~NipL~~g~~d~~y~~~~~~ 230 (311)
T PF00850_consen 151 GLKRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYPGNFYPFGTGFPDEIGEGKGKGYNLNIPLPPGTGDDEYLEAFEE 230 (311)
T ss_dssp TTSSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-CTTSTTTSS--TT--ESGGGTTSEEEEEE-TTEBHHHHHHHHHH
T ss_pred ccceEEEEEeCCCCcccchhheeCCCCEEecCccccccccCCCcCCCccccCCCcccceeEecccccccchHHHHHHHhh
Confidence 99999999999999999999999999999999999 78999 77753 3458999999999999999999999
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCChhHHHHHHHHHhhhc
Q 019524 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALWSIRFHVF 338 (339)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~~~~~a~~~~~~~~~ 338 (339)
+|.|++++|+||+||||||||+|++||+|.|+||+++|.++++.|++++.++++|++++|||||+...+..+|+..+..|
T Consensus 231 ~l~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~~~~~~~~L 310 (311)
T PF00850_consen 231 ILLPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARSWAAVIAAL 310 (311)
T ss_dssp HHHHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHHHHHHHHHH
T ss_pred ccccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998876699999999999977777776665544
No 5
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=100.00 E-value=7.5e-68 Score=502.28 Aligned_cols=303 Identities=26% Similarity=0.437 Sum_probs=273.1
Q ss_pred cCCCCcceEEECcccCcccCCCCCCCCCCChHHHHHHHHHHHCCCCCCCeeeCCCCCCHHHHhccCChhHHHHhhcCCCc
Q 019524 29 DIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNV 108 (339)
Q Consensus 29 ~~~~~~~~ivy~~~~~~h~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~ 108 (339)
+..++++.+.|+++-....+| .+||+.|.|++.+++++..+||.+.+++.+|..|+.+|+.++||++||++|++..+.
T Consensus 3 ~~~k~~V~y~yd~~vg~~~Yg--~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~ 80 (425)
T KOG1342|consen 3 SLIKRRVSYFYDPDVGNFHYG--QGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPE 80 (425)
T ss_pred CcCCceEEEEecCcccccccc--CCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCcc
Confidence 456789999999998765444 789999999999999999999999999999999999999999999999999987664
Q ss_pred cccc---cCCCccccCCccccccchHHHHHHhcHHHHHHHHhhh--hcceeeccCCCCCCCCCCCCcccccchHHHHHHH
Q 019524 109 SIII---EVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE--RGWAINVGGGFHHCSADEGGGFCAYADISLCIHY 183 (339)
Q Consensus 109 ~~~~---e~~~~~~~~~~~~~~~~~~~a~~aagg~l~aa~~~~~--~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~ 183 (339)
.... +.....+..||+++.++++.+++.+||++.||+.+-+ ..+|+||.||.|||.+++|+||||+||++++|..
T Consensus 81 n~~~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILe 160 (425)
T KOG1342|consen 81 NMETFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILE 160 (425)
T ss_pred cccccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHH
Confidence 3211 1222346789999999999999999999999987754 4699999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEeccCcCCcchhhhhcCCCcEEEEEeeCC--CCCCCCcc-------cCCccccccccCCCCChHHHHH
Q 019524 184 AFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP--GIYPRDYE-------ARRFIDQKVEVVSGTTTNEYLK 254 (339)
Q Consensus 184 l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~--~~yP~tg~-------~~~~~~~NvPL~~g~~d~~yl~ 254 (339)
|++.+ +||++||+|+|||||+|++||..++|+|+|+|-. +||||||. .++.+.|||||.+|++|+.|..
T Consensus 161 LlK~h--~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~ 238 (425)
T KOG1342|consen 161 LLKYH--KRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYES 238 (425)
T ss_pred HHHhC--CceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHH
Confidence 99974 6999999999999999999999999999999974 59999985 2456899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCChhHHHHHHHHH
Q 019524 255 KLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALWSIR 334 (339)
Q Consensus 255 a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~~~~~a~~~~~ 334 (339)
+|+.++.++++.|+|++||+|||.|++.+|+||.|+||.+|..+.. ++.+++++|+++++||||+..+|.+|||..
T Consensus 239 if~pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv----~fvksfn~pllvlGGGGYT~rNVARcWtYe 314 (425)
T KOG1342|consen 239 IFKPIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECV----KFVKSFNLPLLVLGGGGYTLRNVARCWTYE 314 (425)
T ss_pred HHHHHHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHH----HHHHHcCCcEEEecCCccchhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999854 455778999999999999999999999999
Q ss_pred hhhcC
Q 019524 335 FHVFV 339 (339)
Q Consensus 335 ~~~~~ 339 (339)
+.+++
T Consensus 315 T~v~~ 319 (425)
T KOG1342|consen 315 TGVLL 319 (425)
T ss_pred hhhhc
Confidence 88764
No 6
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-60 Score=426.82 Aligned_cols=316 Identities=57% Similarity=0.964 Sum_probs=301.9
Q ss_pred cccccccccCCCCcceEEECcccCcccCCCCCCCCCCChHHHHHHHHHHHCCCCCCCeeeCCCCCCHHHHhccCChhHHH
Q 019524 21 ILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLK 100 (339)
Q Consensus 21 ~~~~~~~~~~~~~~~~ivy~~~~~~h~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~ 100 (339)
.+.+++|++.|..+++|+|++.|...+.|++..||++..++..+.+.|.+.+++..-.++||.++++|+|++|||.+|++
T Consensus 2 v~~~kly~~vp~~k~pIvyS~~Y~i~FmGlEkLHPFDa~Kwg~v~kfL~~~~~l~d~~lvEp~e~t~e~L~rvHtr~YLk 81 (324)
T KOG1344|consen 2 VVWVKLYDAVPAGKLPIVYSRNYAIRFMGLEKLHPFDAAKWGHVHKFLCAMNLLTDETLVEPNEATKEDLLRVHTRKYLK 81 (324)
T ss_pred ceeeeecccCccccccEEecCccceeecchhhcCcCcccchhHHHHHHHHhccccccccccCcccCHHHHHhHhhHHHHH
Confidence 35678899999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HhhcCCCccccccCCCccccCCccccccchHHHHHHhcHHHHHHHHhhhhcceeeccCCCCCCCCCCCCcccccchHHHH
Q 019524 101 SLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLC 180 (339)
Q Consensus 101 ~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~a~~aagg~l~aa~~~~~~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIA 180 (339)
.++.....+.+.|+|...+.|++++..+.+.+.++.+|||+.|+++++++|+|+|.+||+|||..++++|||.+-|+.+|
T Consensus 82 slr~s~~vA~I~EiP~v~flPn~~iqrk~LrPlR~QagGtilA~kLAle~GWAINvGGGFHHcss~rGGGFC~yADItl~ 161 (324)
T KOG1344|consen 82 SLRWSIKVAQITEIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAKLALERGWAINVGGGFHHCSSSRGGGFCAYADITLA 161 (324)
T ss_pred HhhccceeeEEEeccccccCchhhhhhhhccceeeccCceeehhhhhhhcCeEEeecCccceeccCCCCceeehhhHHHH
Confidence 99987777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEeccCcCCcchhhhhcCCCcEEEEEeeCCCCCCCCcccCCccccccccCCCCChHHHHHHHHHHH
Q 019524 181 IHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEAL 260 (339)
Q Consensus 181 a~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~~yP~tg~~~~~~~~NvPL~~g~~d~~yl~a~~~~l 260 (339)
+..+-++..+.|++|||+|+|+|||.+.-|.++ .|+.+.++..-.||++..+++.....|.|..|++|++|+..+++.+
T Consensus 162 I~~lFer~~isr~mivDLDAHQGNghErdf~~~-~vyi~d~ynr~iyp~D~~Ak~~Ir~kVEl~~gTeddeYLrkl~r~l 240 (324)
T KOG1344|consen 162 IFFLFERKAISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMYNRFIYPRDHVAKESIRCKVELRNGTEDDEYLRKLKRCL 240 (324)
T ss_pred HHHHHhhhhhhheEEEecccccCCccccccccc-eeehhhhhhhhccchhHHHHHHhhheeeeecCCCchHHHHHHHHHH
Confidence 999999888999999999999999999999888 8888899988899998888887888899999999999999999999
Q ss_pred HHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCC--ChhHHHHHHHHHhhh
Q 019524 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPI--TSEKVLALWSIRFHV 337 (339)
Q Consensus 261 ~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY--~~~~~~a~~~~~~~~ 337 (339)
+..+++|+||+||+.||.|...+||||.+.+|++|.-++++.+++++++.++|+|.+..||| ..++++|+++.++-+
T Consensus 241 ~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~sArvIaDSI~NL~~ 319 (324)
T KOG1344|consen 241 MQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGYLKASARVIADSIVNLRL 319 (324)
T ss_pred HHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCceehhhhhhhHHHHHhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999 778999999998754
No 7
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=8.1e-48 Score=401.51 Aligned_cols=262 Identities=24% Similarity=0.342 Sum_probs=214.0
Q ss_pred CCCCCCChHHHHHHHHHHHCCCCCCCeeeCCCCCCHHHHhccCChhHHHHhhcCCCccccccCC-CccccCCccccccch
Q 019524 52 KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVP-PVALFPNCLVQRKVL 130 (339)
Q Consensus 52 ~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~~~~~e~~-~~~~~~~~~~~~~~~ 130 (339)
..||+.|.| ....+. .|++.+|+.+ |+.++++.||+..|+..+............. .......+.+.+++|
T Consensus 463 ~~~~~~p~r---~~t~~~-~gl~~~c~r~----at~~el~~vHs~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dt~ 534 (797)
T KOG1343|consen 463 SRSPESPAR---FTTGLH-TGLLGKCERI----ATLEELQLVHSEAHVLLYGSRKLLGDLSLKFESRLPCGGIGVDSDTW 534 (797)
T ss_pred cCCcccchh---hhcccc-cccccccccc----cchhhhhhcccchhhcccchhhhcccccchhhhhccccceeecccHH
Confidence 368999999 222222 7888888776 9999999999999999865221111100000 001223444556666
Q ss_pred HHHHHHhcHHHHHHHHhhh------hcceeeccCCCCCCCCCCCCcccccchHHHHHHHHHHHcCCCeEEEEeccCcCCc
Q 019524 131 YPFRKQVGGTILAAKLAKE------RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204 (339)
Q Consensus 131 ~~a~~aagg~l~aa~~~~~------~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l~~~~~~~RV~IiD~DvHHGn 204 (339)
.....++|++..++..+++ .|+|++++|| |||.+..++|||+|||+|||+++++..+.++||+|+||||||||
T Consensus 535 ~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppG-Hha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivdwDvhhgn 613 (797)
T KOG1343|consen 535 WNELHSSGAARLAVGCVIELAFKVASGFAVVRPPG-HHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVDWDVHHGN 613 (797)
T ss_pred HHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCc-cccccCCcceeeeecchhhhhHHhhhhhhhcceEEEeecccCCc
Confidence 6666677777666655422 3799999998 99999999999999999999999999887899999999999999
Q ss_pred chhhhhcCCCcEEEEEeeC---CCCCCCCcc-------cCCccccccccCCCC-ChHHHHHHHHHHHHHHHhhcCCCEEE
Q 019524 205 GHEKDFSSDSRVYILDMFN---PGIYPRDYE-------ARRFIDQKVEVVSGT-TTNEYLKKLDEALEVAGHTFDPELVI 273 (339)
Q Consensus 205 GTq~if~~d~~Vl~iSiH~---~~~yP~tg~-------~~~~~~~NvPL~~g~-~d~~yl~a~~~~l~p~~~~f~PdlIv 273 (339)
|||.+||+|++|+|+|+|. .++||++|. .+.++|+|||++.+. +|.+|+.+|+++++|+.++|.||+|+
T Consensus 614 gtq~~f~~~~~vlyislhr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey~~a~~~vv~Pia~~F~pd~Vl 693 (797)
T KOG1343|consen 614 GTQQAFYSDPSVLYISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGLDPDAEYLAAFRTVVMPIAYEFNPDLVL 693 (797)
T ss_pred ceeeeeccCccccccccchhccCCcCCCCCCchhcccccccceeecccccCCCCCCHHHHHHHHHhhHHHHHHhCCCeEE
Confidence 9999999999999999986 368899853 245789999997554 46999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCChh
Q 019524 274 YNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSE 325 (339)
Q Consensus 274 vsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~~ 325 (339)
+|+|||+..+||||+.++|.++|..+++.++++| ++|++.+|||||+..
T Consensus 694 vSagfDaa~~dplg~~~vt~~~~~~lt~~l~~la---gGRvv~~LEggy~lt 742 (797)
T KOG1343|consen 694 VSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLA---GGRVVLALEGGYDLT 742 (797)
T ss_pred EeccccccccCccccccccHhHHHHHHHHHHHhc---CCcEEEEecCCcchh
Confidence 9999999999999999999999999999999998 899999999999864
No 8
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-36 Score=318.32 Aligned_cols=293 Identities=20% Similarity=0.223 Sum_probs=243.1
Q ss_pred CCcceEEECcccCcccCCCCCCCC-CCChHHHHHHHHHHHCCCCCCCeeeCC-CCCCHHHHhccCChhHHHHhhcCCCcc
Q 019524 32 IFKLPLIYSPDYDISFLGIEKLHP-FDSSKWGRICQFLSSEGFLDKNCIVEP-LEASKEDLLVVHSESYLKSLQSSPNVS 109 (339)
Q Consensus 32 ~~~~~ivy~~~~~~h~~~~~~~HP-e~p~R~~~i~~~L~~~gl~~~~~~~~p-~~a~~e~l~~vHs~~Yv~~l~~~~~~~ 109 (339)
.+++.++|++.+..|....+..|+ +.++|++++.+.+.+.++.+.+.+..+ +.+++++++.+|+++|++.+.......
T Consensus 28 ~~~~~l~~~~~~~~h~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~ke~~~~~~~t~~~~ 107 (797)
T KOG1343|consen 28 QIQKQLLFAEFQKQHENQQELLEKEEKLERLRQIEEELERHRLEQPLLILRNKREAKESAVASVHVKEKLQEFLLSKKMT 107 (797)
T ss_pred hhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHHhhccCCccccccccchhhcccchhcccccHHHHHHHHhhhhhc
Confidence 467899999999998643334455 889999999999999999887776665 899999999999999999998655221
Q ss_pred ccccCC-CccccCCccccccchHHHHHHhcHHHHHHHHhh----hhcceeeccCCCCCCCCCCCCcccccchHHHHHHHH
Q 019524 110 IIIEVP-PVALFPNCLVQRKVLYPFRKQVGGTILAAKLAK----ERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYA 184 (339)
Q Consensus 110 ~~~e~~-~~~~~~~~~~~~~~~~~a~~aagg~l~aa~~~~----~~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l 184 (339)
...... ...-.+..+.++.++..+..+.|+.+...+..+ .++.+..+++| |||+++...|||+|||||++++..
T Consensus 108 ~e~~l~~~~~~~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~-hhsep~~~~~~cl~n~Va~~~~~~ 186 (797)
T KOG1343|consen 108 AEEGLNHSSSRYPSLYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPG-HHSEPNLKVGFCLFNNVAERRSSP 186 (797)
T ss_pred chhhhhcccCCCCcceecCCchhhhcccCcccccccccccCCcccCccCcCCCCC-CccccchhcchhHHHHHHHHhhcc
Confidence 111010 012346778888889999999999888665543 35688888887 999999999999999999999988
Q ss_pred HHHcCCCeEEEEeccCcCCcchhhhhcC--CCcEEEEEeeC---CCCCCCCcc---------cCCcccccccc-CCCCCh
Q 019524 185 FVQLNISRVMIIDLDAHQGNGHEKDFSS--DSRVYILDMFN---PGIYPRDYE---------ARRFIDQKVEV-VSGTTT 249 (339)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHGnGTq~if~~--d~~Vl~iSiH~---~~~yP~tg~---------~~~~~~~NvPL-~~g~~d 249 (339)
..++..+||+|+|||+|||+|||..|++ |++|+++|+|. ..|||.... .+.++++|+|+ ..|++|
T Consensus 187 ~~~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~~~ 266 (797)
T KOG1343|consen 187 LLRRKKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGMTD 266 (797)
T ss_pred ccccccceeEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCCcc
Confidence 8777689999999999999999999999 99999999997 479999532 24568899998 478999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCC-CCCCccCHHHHHHHHHHHHHHHhhCC-CCEEEEeCCCCChhHH
Q 019524 250 NEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDP-LGMLKISPDGIAARDEKTFRFARSRN-IPIVMLTSGPITSEKV 327 (339)
Q Consensus 250 ~~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dp-lg~~~lt~~g~~~~~~~l~~~a~~~~-~p~v~vleGGY~~~~~ 327 (339)
.+|..+|..++.|...+|+||++++|||||+..+|| +|.|..|+.+|.+++++ .+. .+ +++++++||||... .
T Consensus 267 ~dy~~~~~~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~m~~tP~~~~~~~~~-~~~---~~r~~l~v~~e~gy~le-~ 341 (797)
T KOG1343|consen 267 ADYEAAFLHVLLPHASEFQPDLLLVSAGFDALLGDGPVGLMAQTPLGYAHRTSM-HRP---LGRGQLVVVLEGGYFLE-K 341 (797)
T ss_pred hhhhhhhhccCccchhhcCcceEEeeccccccccCcccCcccCCcccHHHHhcc-ccc---cccCccceecchhHHHH-H
Confidence 999999999999999999999999999999999997 79999999999999886 112 24 89999999999874 4
Q ss_pred HHH
Q 019524 328 LAL 330 (339)
Q Consensus 328 ~a~ 330 (339)
++.
T Consensus 342 l~~ 344 (797)
T KOG1343|consen 342 LAQ 344 (797)
T ss_pred HHH
Confidence 444
No 9
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=90.21 E-value=2.1 Score=37.52 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=46.0
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 240 KVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 240 NvPL~~g~~d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
|.... |.+-.+++..+++.+.+.....+||+|+|..|. |....+.. ....+.+.|...-+.+.+.++ .+.+++++
T Consensus 42 N~gi~-G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~~-~~~~~~~~~~~~~~~ii~~~~-~~~~vi~~ 117 (193)
T cd01835 42 NLGVR-GDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGRK-RPQLSARAFLFGLNQLLEEAK-RLVPVLVV 117 (193)
T ss_pred eecCC-CCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccCc-ccccCHHHHHHHHHHHHHHHh-cCCcEEEE
Confidence 44443 344556677776666554455899999999999 66554221 234567777776555655543 24566554
No 10
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=87.36 E-value=3.4 Score=35.24 Aligned_cols=45 Identities=24% Similarity=0.360 Sum_probs=31.8
Q ss_pred hcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhh--CCCCEEEE
Q 019524 266 TFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS--RNIPIVML 317 (339)
Q Consensus 266 ~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~--~~~p~v~v 317 (339)
.++||+||++.|. |... ..+++.|.+-.+.+.+.+++ .+.+++++
T Consensus 46 ~~~pd~vvl~~G~ND~~~-------~~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 46 ALQPKAIFIMIGINDLAQ-------GTSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred ccCCCEEEEEeeccCCCC-------CCCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 6799999999997 5432 24677777766677777766 46666654
No 11
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=87.17 E-value=4.1 Score=34.72 Aligned_cols=49 Identities=29% Similarity=0.465 Sum_probs=33.9
Q ss_pred HHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 263 AGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 263 ~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
.+..++||+|++..|.. |... ..+.+.|..-.+.+.+.+++.+.+++++
T Consensus 59 ~~~~~~pd~v~i~~G~N----D~~~--~~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 59 LLAQHKPDLVILELGGN----DGLR--GIPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred HHHhcCCCEEEEeccCc----cccc--CCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 34568999999999972 2222 2467778777777777777777776665
No 12
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=86.44 E-value=4.5 Score=34.89 Aligned_cols=57 Identities=35% Similarity=0.415 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 255 KLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 255 a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
.+...+..++ .++||+|||..|. |+.. -..+.+.|.+-.+.+.+.++..+.+++++-
T Consensus 55 ~~~~~~~~~~-~~~~d~vii~~G~ND~~~------~~~~~~~~~~~~~~~i~~i~~~~~~vil~~ 112 (185)
T cd01832 55 ILAEQLPAAL-ALRPDLVTLLAGGNDILR------PGTDPDTYRADLEEAVRRLRAAGARVVVFT 112 (185)
T ss_pred HHHHHHHHHH-hcCCCEEEEecccccccc------CCCCHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 3333344443 4799999999998 5533 135677777776667777665566666653
No 13
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=86.27 E-value=5 Score=34.66 Aligned_cols=59 Identities=24% Similarity=0.378 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 249 d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
-.+++..+++.+ ...+||+|+++.|. |...+ .+.+.|.+-.+.+.+.+++.+.+++++.
T Consensus 44 ~~~~l~~l~~~~----~~~~~d~v~i~~G~ND~~~~-------~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 44 TSQMLVRFYEDV----IALKPAVVIIMGGTNDIIVN-------TSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred HHHHHHHHHHHH----HhcCCCEEEEEeccCccccC-------CCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 345555554433 45699999999998 54432 2566777777777777777777766654
No 14
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=83.07 E-value=2.7 Score=35.03 Aligned_cols=69 Identities=23% Similarity=0.464 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 019524 246 GTTTNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (339)
Q Consensus 246 g~~d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vle 319 (339)
|.+-.+++..++..+.+ +...+||+||++.|. |...+ .....+.+.|....+.+.+.+...+ +++++.-
T Consensus 40 G~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~ND~~~~---~~~~~~~~~~~~~l~~~i~~~~~~~-~vi~~~~ 109 (179)
T PF13472_consen 40 GATSSDFLARLQRDVLR-FKDPKPDLVVISFGTNDVLNG---DENDTSPEQYEQNLRRIIEQLRPHG-PVILVSP 109 (179)
T ss_dssp T-BHHHHHHHHHHHCHH-HCGTTCSEEEEE--HHHHCTC---TTCHHHHHHHHHHHHHHHHHHHTTS-EEEEEE-
T ss_pred CccHhHHHHHHHHHHhh-hccCCCCEEEEEccccccccc---ccccccHHHHHHHHHHHHHhhcccC-cEEEecC
Confidence 34444566666665555 589999999999997 55553 2234456666666666666665555 7766654
No 15
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=82.34 E-value=6.8 Score=34.03 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=39.0
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhh--CCCCEEEE
Q 019524 246 GTTTNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS--RNIPIVML 317 (339)
Q Consensus 246 g~~d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~--~~~p~v~v 317 (339)
|..-.+++..+++ +..++||+|++..|. |.... .+.+.|.+-.+.+++.+++ .+.+++++
T Consensus 50 G~t~~~~~~~l~~-----~~~~~pd~Vii~~G~ND~~~~-------~~~~~~~~~l~~li~~i~~~~~~~~iiv~ 112 (191)
T cd01836 50 GATSADLLRQLAP-----LPETRFDVAVISIGVNDVTHL-------TSIARWRKQLAELVDALRAKFPGARVVVT 112 (191)
T ss_pred CcCHHHHHHHHHh-----cccCCCCEEEEEecccCcCCC-------CCHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 3445666666655 357899999999998 65432 3566676666666666665 35566554
No 16
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=82.08 E-value=7 Score=33.67 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhC--CCCEEEEe
Q 019524 259 ALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIVMLT 318 (339)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~--~~p~v~vl 318 (339)
.+.+.+.+.+||+|+++.|. |... ...+.+.|..--+.+.+.+++. +.+++++.
T Consensus 47 ~~~~~l~~~~pd~Vii~~G~ND~~~------~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~ 103 (189)
T cd01825 47 FLQAQLAALPPDLVILSYGTNEAFN------KQLNASEYRQQLREFIKRLRQILPNASILLVG 103 (189)
T ss_pred HHHHHHhhCCCCEEEEECCCccccc------CCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEc
Confidence 33445678899999999997 5432 2346777777666676666663 45566553
No 17
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=80.48 E-value=8 Score=32.44 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=28.7
Q ss_pred HHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhC
Q 019524 262 VAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR 310 (339)
Q Consensus 262 p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~ 310 (339)
..+...+||+|+++.|. |...+ .+.+.|.+.-+.+.+.+++.
T Consensus 34 ~~~~~~~pd~vvi~~G~ND~~~~-------~~~~~~~~~~~~~i~~i~~~ 76 (157)
T cd01833 34 DWVLAAKPDVVLLHLGTNDLVLN-------RDPDTAPDRLRALIDQMRAA 76 (157)
T ss_pred hccccCCCCEEEEeccCcccccC-------CCHHHHHHHHHHHHHHHHHh
Confidence 34456899999999998 44332 45666776666666666654
No 18
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=79.08 E-value=9.5 Score=32.90 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=32.3
Q ss_pred CCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhh--CCCCEEEE
Q 019524 268 DPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS--RNIPIVML 317 (339)
Q Consensus 268 ~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~--~~~p~v~v 317 (339)
+||+|||..|. |...... .-..+.+.|....+.+.+.+++ .+.+++++
T Consensus 63 ~pd~vii~~G~ND~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQ--PQHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred CceEEEEEecCccccCCCC--CCcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 89999999998 5543211 0235677887777777777766 35566555
No 19
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=78.31 E-value=12 Score=33.13 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=33.2
Q ss_pred HHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 263 AGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 263 ~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
.+..++||+||+..|. |... .++.+.|.+--+.+.+.+++.+.+++++
T Consensus 66 ~l~~~~pd~Vii~~GtND~~~-------~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 66 LLKQHQPRWVLVELGGNDGLR-------GFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred HHHhcCCCEEEEEeccCcCcc-------CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3456799999999998 5432 3567777776667777777666555444
No 20
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=78.30 E-value=10 Score=33.25 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=33.2
Q ss_pred CCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 268 DPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 268 ~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
+||+|+++.|. |+....+ .-..+.+.|.+--+.+.+.+++.+.+++++
T Consensus 65 ~pdlVii~~G~ND~~~~~~--~~~~~~~~~~~nl~~ii~~~~~~~~~~il~ 113 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKDP--EYTEPYTTYKEYLRRYIAEARAKGATPILV 113 (198)
T ss_pred CCCEEEEECCCCCCCCCCC--CCCCcHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 79999999998 6544321 123567778777777777777777765554
No 21
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=75.37 E-value=16 Score=31.05 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=39.3
Q ss_pred ccccccCCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhC--CCCE
Q 019524 238 DQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPI 314 (339)
Q Consensus 238 ~~NvPL~~g~~d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~--~~p~ 314 (339)
.+|..+...+ -.+++..++ +.+...+||+|+|..|. |...+ .+.+.|.+--+.+.+.+++. +.++
T Consensus 26 v~n~g~~G~t-~~~~~~~~~----~~~~~~~pd~v~i~~G~ND~~~~-------~~~~~~~~~~~~l~~~~~~~~p~~~v 93 (174)
T cd01841 26 VNNLGIAGIS-SRQYLEHIE----PQLIQKNPSKVFLFLGTNDIGKE-------VSSNQFIKWYRDIIEQIREEFPNTKI 93 (174)
T ss_pred EEeccccccc-HHHHHHHHH----HHHHhcCCCEEEEEeccccCCCC-------CCHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 3566654433 344444442 33356799999999998 65443 26666666555666655543 3454
Q ss_pred EE
Q 019524 315 VM 316 (339)
Q Consensus 315 v~ 316 (339)
++
T Consensus 94 i~ 95 (174)
T cd01841 94 YL 95 (174)
T ss_pred EE
Confidence 44
No 22
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=74.67 E-value=18 Score=30.89 Aligned_cols=48 Identities=21% Similarity=0.429 Sum_probs=31.0
Q ss_pred HHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhC--CCCEEEE
Q 019524 263 AGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIVML 317 (339)
Q Consensus 263 ~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~--~~p~v~v 317 (339)
.+..++||+|++..|. |...+ .+.+.|.+--+.+.+.+++. +.+++++
T Consensus 45 ~~~~~~p~~vvi~~G~ND~~~~-------~~~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 45 LVLPYQPRRVVLYAGDNDLASG-------RTPEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred hhccCCCCEEEEEEecCcccCC-------CCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 3456899999999998 76432 34666666555566655553 3455443
No 23
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=73.28 E-value=20 Score=31.75 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCC-CCCccCHHHHHHHHHHHHHHHhhCCCCEEE
Q 019524 251 EYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPL-GMLKISPDGIAARDEKTFRFARSRNIPIVM 316 (339)
Q Consensus 251 ~yl~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dpl-g~~~lt~~g~~~~~~~l~~~a~~~~~p~v~ 316 (339)
+.+.-|.+. +++.-+||+|+|..|. |......- +.-.++.+.|..--+.+.+.+++.+.++++
T Consensus 60 ~~l~r~~~~---v~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil 124 (204)
T cd01830 60 SALARFDRD---VLSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIG 124 (204)
T ss_pred HHHHHHHHH---HhcCCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 344444433 2344479999999998 65433211 122457777877777777888877777665
No 24
>PRK13236 nitrogenase reductase; Reviewed
Probab=72.65 E-value=4.8 Score=38.51 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCCeEEEEeccCcCCcchhhhhcC
Q 019524 177 ISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSS 212 (339)
Q Consensus 177 vAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~ 212 (339)
+|+-..+++.+.| +||++||.|.+.+| |.-+|..
T Consensus 22 ~a~NLA~~La~~G-~rVLliD~D~q~~~-~~~l~~~ 55 (296)
T PRK13236 22 TSQNTLAAMAEMG-QRILIVGCDPKADS-TRLMLHS 55 (296)
T ss_pred HHHHHHHHHHHCC-CcEEEEEccCCCCc-cchhccC
Confidence 4445555556656 69999999999988 5555543
No 25
>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.
Probab=71.70 E-value=6.1 Score=35.65 Aligned_cols=95 Identities=19% Similarity=0.229 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCCeEEEEeccCcCC-cch--hhhhcCCCcEEE--EEeeCCCCCCCCcccCCc--cccccccCCCCChH
Q 019524 178 SLCIHYAFVQLNISRVMIIDLDAHQG-NGH--EKDFSSDSRVYI--LDMFNPGIYPRDYEARRF--IDQKVEVVSGTTTN 250 (339)
Q Consensus 178 AIAa~~l~~~~~~~RV~IiD~DvHHG-nGT--q~if~~d~~Vl~--iSiH~~~~yP~tg~~~~~--~~~NvPL~~g~~d~ 250 (339)
-+|+.|+.++.+.++|..||-|-+.- .|. .-.+.++.+... +.+|. .+ ..+- ...+.|.|++
T Consensus 13 ~la~d~Li~~l~~~~vg~i~~~~~~P~~~~~p~~~~~~g~~~~~~~~~iy~-----~~--~~~i~vl~~~~p~~~~---- 81 (219)
T PF09754_consen 13 QLAVDHLIESLNLEKVGYIDSDPLFPYVGPRPYVVVDDGSNILSPPLEIYY-----SE--DSKILVLQGRSPIPPG---- 81 (219)
T ss_dssp HHHHHHHHHHSCEEEEEEE-HHHHSBTTTS--EEEEETTEEEEB-SEEEEE-----EE--CTTEEEEEESSE--SC----
T ss_pred HHHHHHHHHhCCCEEEEEEeccccCCCccCCCeEEeccccceeccceEEEE-----EC--CCCEEEEEecCCCCch----
Confidence 46999999999999999999854442 221 111111100110 11111 00 0010 1124466654
Q ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCC
Q 019524 251 EYLKKLDEALEVAGHTFDPELVIYNAGTDILEGD 284 (339)
Q Consensus 251 ~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~D 284 (339)
+...|-+.+...+++++..-||+-.|+++....
T Consensus 82 -~~~~f~~~l~~~~~~~g~~~vi~l~g~~~~~~~ 114 (219)
T PF09754_consen 82 -RWYEFAEELLDWIKSFGVKEVIVLGGLPAMEPH 114 (219)
T ss_dssp -GHHHHHHHHHHHHHHTTECEEEEEEEEEESS-T
T ss_pred -HHHHHHHHHHHHHHHcCCCEEEEEeCCcCCCCc
Confidence 344555557778899999999999999988865
No 26
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=71.29 E-value=11 Score=33.77 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=29.0
Q ss_pred HhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhC--CCCEEEE
Q 019524 264 GHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIVML 317 (339)
Q Consensus 264 ~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~--~~p~v~v 317 (339)
+..++||+|||..|. |...+ .+.+.|..--+.+.+.+++. +.+++++
T Consensus 85 l~~~~pd~VvI~~G~ND~~~~-------~~~~~~~~~l~~ii~~l~~~~P~~~Iil~ 134 (214)
T cd01820 85 LDGVNPKVVVLLIGTNNIGHT-------TTAEEIAEGILAIVEEIREKLPNAKILLL 134 (214)
T ss_pred ccCCCCCEEEEEecccccCCC-------CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 356799999999998 44221 25666665555555555554 3444443
No 27
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=70.91 E-value=3.2 Score=35.30 Aligned_cols=48 Identities=23% Similarity=0.184 Sum_probs=34.4
Q ss_pred CCCCCCCCCccccc-----chHHHHHHHHHHHcCCCeEEEEeccCcCCcchhh
Q 019524 161 HHCSADEGGGFCAY-----ADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208 (339)
Q Consensus 161 HHA~~~~a~GFC~f-----NnvAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~ 208 (339)
---..-.++|||++ .++-.|.+|+-...--+|++-+|||.-.=+|-|.
T Consensus 70 Ldr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQy 122 (153)
T KOG0121|consen 70 LDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQY 122 (153)
T ss_pred cccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhhh
Confidence 33445688999987 3566677776443223899999999988788774
No 28
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=70.81 E-value=8.6 Score=34.46 Aligned_cols=24 Identities=8% Similarity=0.313 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcC
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAG 277 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG 277 (339)
..+++.+..+.++|++|+|||-++
T Consensus 134 ~~l~~~l~~l~~~y~~D~IiiD~p 157 (207)
T TIGR03018 134 QRMRSLLHELARRYPDRIIIIDTP 157 (207)
T ss_pred HHHHHHHHHHHhhCCCCEEEEECC
Confidence 346777777778888899999776
No 29
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=70.20 E-value=22 Score=36.48 Aligned_cols=66 Identities=18% Similarity=0.334 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC--CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCC------hh
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAGT--DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPIT------SE 325 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG~--D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~------~~ 325 (339)
+-|++++..++++|+|++|+|..++ ..-.+| .++. ..++.++.++|||.+-..|+. ..
T Consensus 83 ~~L~~~i~ei~~~~~p~~ifv~~TC~t~iIGdD--------le~v------a~~~~~~~gipVV~v~~~Gf~~~~tqg~d 148 (457)
T CHL00073 83 EELKRLCLQIKKDRNPSVIVWIGTCTTEIIKMD--------LEGM------APKLEAEIGIPIVVARANGLDYAFTQGED 148 (457)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEccCcHHhhccC--------HHHH------HHHHHHhhCCCEEEEeCCCccCcCCcchh
Confidence 3556677788899999999998775 222222 2222 223334569999999999985 34
Q ss_pred HHHHHHHH
Q 019524 326 KVLALWSI 333 (339)
Q Consensus 326 ~~~a~~~~ 333 (339)
.++++.+.
T Consensus 149 ~~Laa~~~ 156 (457)
T CHL00073 149 TVLAAMAH 156 (457)
T ss_pred HHHHHhHH
Confidence 66666664
No 30
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=70.04 E-value=17 Score=33.03 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 256 ~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
+.+.+..+.++++|++|||-. ........ .-.-..+....+.+.|.++|++++++++++-
T Consensus 111 l~~~i~~~~~~~~~~~vvID~-l~~l~~~~--~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 111 IRSRARRLKKEHGLGLIVIDY-LQLMSGSK--KKGNRQQEVAEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred HHHHHHHHHHhcCCCEEEEcC-chhcCCCC--CCCCHHHHHHHHHHHHHHHHHHhCCeEEEec
Confidence 334444555778999999842 22221111 0001123455677888899999999988876
No 31
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=66.52 E-value=20 Score=34.15 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCChhHHH
Q 019524 251 EYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVL 328 (339)
Q Consensus 251 ~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~~~~~ 328 (339)
+|...|++.+ |.+++|+-..+||-.|=.+..+| .+..+.+.+..+ .+.+.++|+|.+||......+
T Consensus 1 ~~~~~~~~~~-~yi~~~~~~~~VIKlGG~ai~~~----------~l~~~~~~ia~l-~~~g~~~ViVHGggp~i~~~~ 66 (280)
T cd04237 1 QFVDWFREAA-PYINAHRGKTFVIAFGGEAVAHP----------NFDNIVHDIALL-HSLGIRLVLVHGARPQIDQRL 66 (280)
T ss_pred ChHHHHHHHh-HHHHHhCCCEEEEEEChHHhcCc----------hHHHHHHHHHHH-HHCCCcEEEEeCCCHHHHHHH
Confidence 3677888875 56699999999999987777654 222333334333 334789999999999665433
No 32
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=66.43 E-value=33 Score=29.79 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=32.6
Q ss_pred HHhhcCCCEEEEEcCC-CCCCCC-CCCCCcc-C---HHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 263 AGHTFDPELVIYNAGT-DILEGD-PLGMLKI-S---PDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 263 ~~~~f~PdlIvvsaG~-D~~~~D-plg~~~l-t---~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
.+.+.+||+|+++.|. |....- +-+.... + .+.|...-+.+.+.+++.+.+++++.
T Consensus 54 ~l~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili~ 115 (200)
T cd01829 54 LIAEEKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWVG 115 (200)
T ss_pred HHhcCCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 3467899999999998 654321 1111111 1 25565555556666666677776653
No 33
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=66.13 E-value=7.2 Score=35.45 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=15.5
Q ss_pred HHHHcCCCeEEEEeccCcCCc
Q 019524 184 AFVQLNISRVMIIDLDAHQGN 204 (339)
Q Consensus 184 l~~~~~~~RV~IiD~DvHHGn 204 (339)
++.+.| +||++||+|.++||
T Consensus 24 ~la~~g-~~VlliD~D~~~~~ 43 (251)
T TIGR01969 24 ALAKLG-KKVLALDADITMAN 43 (251)
T ss_pred HHHHCC-CeEEEEeCCCCCcc
Confidence 334445 69999999998887
No 34
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=64.22 E-value=33 Score=30.27 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=27.7
Q ss_pred hcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhC
Q 019524 266 TFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR 310 (339)
Q Consensus 266 ~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~ 310 (339)
..+||+|++..|. |+.. .+.++.+.|.+--+.+.+.+++.
T Consensus 77 ~~~pd~vii~lGtND~~~-----~~~~~~~~~~~~l~~lv~~i~~~ 117 (208)
T cd01839 77 HSPLDLVIIMLGTNDLKS-----YFNLSAAEIAQGLGALVDIIRTA 117 (208)
T ss_pred CCCCCEEEEecccccccc-----ccCCCHHHHHHHHHHHHHHHHhc
Confidence 3799999999998 6543 23456777776666666666553
No 35
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=63.85 E-value=19 Score=30.74 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=31.6
Q ss_pred hhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhh--CCCCEEEE
Q 019524 265 HTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS--RNIPIVML 317 (339)
Q Consensus 265 ~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~--~~~p~v~v 317 (339)
...+||+|+++.|. |...+.+ -..+++.|..-.+.+.+.+++ .+.+++++
T Consensus 58 ~~~~~d~v~l~~G~ND~~~~~~---~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~ 110 (191)
T cd01834 58 LPAKPDVVSIMFGINDSFRGFD---DPVGLEKFKTNLRRLIDRLKNKESAPRIVLV 110 (191)
T ss_pred ccCCCCEEEEEeecchHhhccc---ccccHHHHHHHHHHHHHHHHcccCCCcEEEE
Confidence 45789999999997 5554322 134667776666666666642 34555554
No 36
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=61.82 E-value=94 Score=28.84 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=22.8
Q ss_pred cchHH-HHHHHHHHHcCCCeEEEEecc
Q 019524 174 YADIS-LCIHYAFVQLNISRVMIIDLD 199 (339)
Q Consensus 174 fNnvA-IAa~~l~~~~~~~RV~IiD~D 199 (339)
+|||. ||+.|+.++.+.++|..||-|
T Consensus 26 ~G~VG~iA~~~Li~~l~~~~ig~I~s~ 52 (238)
T TIGR00161 26 VGLVGNIAGWLLIEDLKLREIGYIDSK 52 (238)
T ss_pred CChHHHHHHHHHHHHcCCeEEEEEecC
Confidence 57776 889999999999999999975
No 37
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=61.68 E-value=46 Score=27.02 Aligned_cols=56 Identities=29% Similarity=0.356 Sum_probs=34.1
Q ss_pred HHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhh--CCCCEEEEeCCCC
Q 019524 262 VAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS--RNIPIVMLTSGPI 322 (339)
Q Consensus 262 p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~--~~~p~v~vleGGY 322 (339)
......+||+||++.|. |..... ..+.+.+....+.+++.+++ .+.+++++.---+
T Consensus 59 ~~~~~~~~d~vil~~G~ND~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~ 117 (187)
T cd00229 59 LALLKDKPDLVIIELGTNDLGRGG-----DTSIDEFKANLEELLDALRERAPGAKVILITPPPP 117 (187)
T ss_pred hhhccCCCCEEEEEeccccccccc-----ccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCC
Confidence 34577899999999997 443321 34455555555555555553 3566666654444
No 38
>PRK08760 replicative DNA helicase; Provisional
Probab=61.32 E-value=21 Score=36.76 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcc------CHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l------t~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
.+..+.+++++++||| |.|+-|.. ....+.++.+.|..+|+++++||+++-
T Consensus 330 ~~r~l~~~~~~~lVvI---------DyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~ls 386 (476)
T PRK08760 330 KCRRLKREHDLGLIVI---------DYLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIALS 386 (476)
T ss_pred HHHHHHHhcCCCEEEE---------ecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 3344456788999988 44443321 234578899999999999999988763
No 39
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=61.17 E-value=24 Score=35.46 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcc------CHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 257 ~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l------t~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
...+..+.+++++++||| |++.-+.. .......+.+.|.++|+++++|++++-
T Consensus 294 ~~~i~~~~~~~~~~~vvI---------D~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~~i~vi~ls 352 (434)
T TIGR00665 294 RAKARRLKREHGLGLIVI---------DYLQLMSGSGRSENRQQEVSEISRSLKALAKELNVPVIALS 352 (434)
T ss_pred HHHHHHHHHhcCCCEEEE---------cchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 334445556788999998 44443322 123467788899999999999988876
No 40
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=60.53 E-value=12 Score=35.88 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=40.4
Q ss_pred HHHHHhhcCCCEEEEEcCC---CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEE
Q 019524 260 LEVAGHTFDPELVIYNAGT---DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVM 316 (339)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~---D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~ 316 (339)
+..++++.+||+||-+|.+ |..+.+|.-.+.+...+=.. +.+.|.+.|.++|-
T Consensus 42 v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~----lA~aa~~~ga~lVh 97 (281)
T COG1091 42 VLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAEN----LARAAAEVGARLVH 97 (281)
T ss_pred HHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHH----HHHHHHHhCCeEEE
Confidence 4566788899999999986 88888887777666555544 66677777888764
No 41
>PRK05973 replicative DNA helicase; Provisional
Probab=59.41 E-value=21 Score=33.24 Aligned_cols=51 Identities=22% Similarity=0.282 Sum_probs=35.1
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCc--cCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLK--ISPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~--lt~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
++..+.+++++++||| |.++.+. .....+....+.+.++|++++++++++-
T Consensus 138 ii~~l~~~~~~~lVVI---------DsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~s 190 (237)
T PRK05973 138 IIARLASAPRGTLVVI---------DYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFIS 190 (237)
T ss_pred HHHHHHHhhCCCEEEE---------EcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEe
Confidence 3444555789999998 5555442 2233466667778999999999988774
No 42
>PRK05595 replicative DNA helicase; Provisional
Probab=59.15 E-value=21 Score=36.20 Aligned_cols=46 Identities=11% Similarity=0.237 Sum_probs=33.4
Q ss_pred HHhhcCCCEEEEEcCCCCCCCCCCCCCc------cCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 263 AGHTFDPELVIYNAGTDILEGDPLGMLK------ISPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 263 ~~~~f~PdlIvvsaG~D~~~~Dplg~~~------lt~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
+..+.++|+||| |.++-|. -....+.++++.|..+|+++++|++++
T Consensus 306 ~~~~~~~~~vvI---------Dylql~~~~~~~~~r~~~v~~is~~LK~lAke~~i~vi~l 357 (444)
T PRK05595 306 LKIEHGIDMILI---------DYLQLMSGGKGSESRQQEVSEISRSIKALAKEMECPVIAL 357 (444)
T ss_pred HHHhcCCCEEEE---------eHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhCCeEEEe
Confidence 345678999988 3333332 123567889999999999999998875
No 43
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=58.32 E-value=20 Score=33.22 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=34.8
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccC-------HHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKIS-------PDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt-------~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
+.+..++++++|++||| |++..+.-. ...+.++.+.|.++|++++++++++-
T Consensus 130 ~~i~~~~~~~~~~~vvI---------D~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~s 188 (271)
T cd01122 130 EKVRYMAVSHGIQHIII---------DNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVS 188 (271)
T ss_pred HHHHHHHhcCCceEEEE---------CCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 33444557889999998 555443221 12345666778889999999888775
No 44
>PRK09165 replicative DNA helicase; Provisional
Probab=57.31 E-value=28 Score=35.99 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=34.8
Q ss_pred HHHHhhcCCCEEEEEcCCCCCCCCCCCCCcc--------CHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKI--------SPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 261 ~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l--------t~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
..+.+++++++||| |.++-+.- ..+.+.++.+.|..+|+++++||+++-
T Consensus 334 r~l~~~~~~~lvvI---------DyLqli~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~ls 390 (497)
T PRK09165 334 RRLKRQHGLDLLVV---------DYLQLIRGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALS 390 (497)
T ss_pred HHHHHhcCCCEEEE---------cchHhccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEee
Confidence 34446788999987 44443321 124578899999999999999988763
No 45
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=57.19 E-value=38 Score=29.13 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=14.6
Q ss_pred HHHhhcCCCEEEEEcCCC
Q 019524 262 VAGHTFDPELVIYNAGTD 279 (339)
Q Consensus 262 p~~~~f~PdlIvvsaG~D 279 (339)
..+...+||+||+..|..
T Consensus 51 ~~~~~~~pd~vii~~G~N 68 (177)
T cd01844 51 ELLRDVPADLYIIDCGPN 68 (177)
T ss_pred HHHHhcCCCEEEEEeccC
Confidence 444668999999999984
No 46
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=54.81 E-value=17 Score=33.95 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=15.2
Q ss_pred HHHHcCCCeEEEEeccCcCCcchh
Q 019524 184 AFVQLNISRVMIIDLDAHQGNGHE 207 (339)
Q Consensus 184 l~~~~~~~RV~IiD~DvHHGnGTq 207 (339)
++.+.| +||++||+|.+- |.|.
T Consensus 23 ~La~~G-~~VlliD~D~q~-~~~~ 44 (275)
T TIGR01287 23 ALAEMG-KKVMIVGCDPKA-DSTR 44 (275)
T ss_pred HHHHCC-CeEEEEeCCCCC-Cccc
Confidence 334446 699999999884 4444
No 47
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=54.54 E-value=93 Score=27.35 Aligned_cols=62 Identities=21% Similarity=0.385 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 019524 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (339)
Q Consensus 249 d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vle 319 (339)
.++...+|++++.-+ .+.+||+||+ +| |.. .....+.+.+.++.+.+.++. +.++|+.++.|
T Consensus 23 ~~~~~~~~~~~~~~~-~~~~~d~i~~-~G-D~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~G 84 (223)
T cd00840 23 REDQFEAFEEIVELA-IEEKVDFVLI-AG-DLF-----DSNNPSPEALELLIEALRRLK-EAGIPVFIIAG 84 (223)
T ss_pred hHHHHHHHHHHHHHH-HhcCCCEEEE-CC-ccc-----CCCCCCHHHHHHHHHHHHHHH-HCCCCEEEecC
Confidence 466778888887655 6779998776 33 433 222334555555555454432 23677665543
No 48
>PRK05636 replicative DNA helicase; Provisional
Probab=54.24 E-value=34 Score=35.52 Aligned_cols=49 Identities=12% Similarity=0.271 Sum_probs=35.0
Q ss_pred HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcc------CHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l------t~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
+..+..++++++||| |.|+-|.- ....+.++.+.|..+|+++++||+++
T Consensus 367 ~r~~~~~~~~~lvvI---------DYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~l 421 (505)
T PRK05636 367 ARRLKQKHDLKLIVV---------DYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIAI 421 (505)
T ss_pred HHHHHHhcCCCEEEE---------cchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 334445678999988 55544431 12457789999999999999998875
No 49
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=54.11 E-value=1.8e+02 Score=30.92 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=80.0
Q ss_pred CCCcccccc---hHHHHHHHHHHHcCCCeEEEEeccCcCCcchhhhhcCCCcEEEEEeeCCCCCCCCcccC-Ccc----c
Q 019524 167 EGGGFCAYA---DISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEAR-RFI----D 238 (339)
Q Consensus 167 ~a~GFC~fN---nvAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~~yP~tg~~~-~~~----~ 238 (339)
...++|-++ +..|| ...+.+ |+ - ..||+|.|-=|++..+|..+|--.-+|-= -||+|++.. -.| .
T Consensus 312 ~~~~~~~~~~~dd~e~a-~~I~~d-~I-d-ILvDl~g~T~d~r~~v~A~RpAPiqvswl---Gy~aT~g~p~~DY~I~D~ 384 (620)
T COG3914 312 AVEKWYPIGRMDDAEIA-NAIRTD-GI-D-ILVDLDGHTVDTRCQVFAHRPAPIQVSWL---GYPATTGSPNMDYFISDP 384 (620)
T ss_pred hhhheeccCCcCHHHHH-HHHHhc-CC-e-EEEeccCceeccchhhhhcCCCceEEeec---ccccccCCCcceEEeeCc
Confidence 455788888 54444 333332 33 2 45899999999999999999988888843 588876621 111 1
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHhhc--------------------CCCEEEEEcCCCCCCCCCCCCCccCHHHHHH
Q 019524 239 QKVEVVSGTTTNEYLKKLDEALEVAGHTF--------------------DPELVIYNAGTDILEGDPLGMLKISPDGIAA 298 (339)
Q Consensus 239 ~NvPL~~g~~d~~yl~a~~~~l~p~~~~f--------------------~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~ 298 (339)
+-| |+. ...-|-+.+.+ +-..| .+|.+|+.|| -+.++.|++-|..
T Consensus 385 y~v--Pp~-ae~yysEkl~R----Lp~cy~p~d~~~~v~p~~sR~~lglp~~avVf~c~--------~n~~K~~pev~~~ 449 (620)
T COG3914 385 YTV--PPT-AEEYYSEKLWR----LPQCYQPVDGFEPVTPPPSRAQLGLPEDAVVFCCF--------NNYFKITPEVFAL 449 (620)
T ss_pred eec--Cch-HHHHHHHHHHh----cccccCCCCCcccCCCCcchhhcCCCCCeEEEEec--------CCcccCCHHHHHH
Confidence 223 332 23444444433 22222 3356777777 4667888888886
Q ss_pred HHHHHHHHHhhCCCCEEEEeCCCC
Q 019524 299 RDEKTFRFARSRNIPIVMLTSGPI 322 (339)
Q Consensus 299 ~~~~l~~~a~~~~~p~v~vleGGY 322 (339)
-.+.| ++.-.-+++++.||=
T Consensus 450 wmqIL----~~vP~Svl~L~~~~~ 469 (620)
T COG3914 450 WMQIL----SAVPNSVLLLKAGGD 469 (620)
T ss_pred HHHHH----HhCCCcEEEEecCCC
Confidence 55544 444455888888883
No 50
>PRK10818 cell division inhibitor MinD; Provisional
Probab=53.92 E-value=16 Score=33.93 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=16.0
Q ss_pred HHcCCCeEEEEeccCcCCcchh
Q 019524 186 VQLNISRVMIIDLDAHQGNGHE 207 (339)
Q Consensus 186 ~~~~~~RV~IiD~DvHHGnGTq 207 (339)
.+.| +||++||+|.+.||-+.
T Consensus 28 a~~g-~~vllvD~D~~~~~~~~ 48 (270)
T PRK10818 28 AQKG-KKTVVIDFDIGLRNLDL 48 (270)
T ss_pred HHCC-CeEEEEECCCCCCChhh
Confidence 3445 79999999998887443
No 51
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=52.86 E-value=52 Score=29.32 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhh-cC-CCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 254 KKLDEALEVAGHT-FD-PELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 254 ~a~~~~l~p~~~~-f~-PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
..++++..|++++ ++ -|+||| |-.|.|.+.+..|.+..+.++ .++.|+++++
T Consensus 84 ~~le~i~~~al~rA~~~aDvIII---------DEIGpMElks~~f~~~ve~vl----~~~kpliatl 137 (179)
T COG1618 84 EGLEEIAIPALRRALEEADVIII---------DEIGPMELKSKKFREAVEEVL----KSGKPLIATL 137 (179)
T ss_pred HHHHHHhHHHHHHHhhcCCEEEE---------ecccchhhccHHHHHHHHHHh----cCCCcEEEEE
Confidence 3344444454443 33 599987 889999999999998766553 3466777765
No 52
>PHA02542 41 41 helicase; Provisional
Probab=52.76 E-value=59 Score=33.49 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=39.6
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCC-C-CCCccCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 245 SGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDP-L-GMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 245 ~g~~d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dp-l-g~~~lt~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
++.+-.+....++++.. ...+++|+|||-.= .... ++ . +...=..+.+..+.+.|..+|+++++||+++
T Consensus 280 ~~lt~~~ir~~~rrlk~--~~g~~~dlVvIDYL-qL~~-~~~~~~~~~nr~~ei~~Isr~LK~lAkel~vpVi~l 350 (473)
T PHA02542 280 GGAHAGHFRALLNELKL--KKNFKPDVIIVDYL-GICA-SSRLRVSSENSYTYVKAIAEELRGLAVEHDVVVWTA 350 (473)
T ss_pred CCCCHHHHHHHHHHHHH--hcCCCCCEEEEech-hhcc-CCcccCCCCChHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 44555555555554432 13456999988321 0000 00 0 0011134567889999999999999998765
No 53
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=52.52 E-value=48 Score=33.14 Aligned_cols=49 Identities=10% Similarity=0.232 Sum_probs=33.4
Q ss_pred HHHHHhhc-CCCEEEEEcCCCCCCCCCCCCCcc-----CHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 260 LEVAGHTF-DPELVIYNAGTDILEGDPLGMLKI-----SPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 260 l~p~~~~f-~PdlIvvsaG~D~~~~Dplg~~~l-----t~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
+..+..++ ++++|||- .|.-+.. ..+...++.+.|.++|+++++|++++
T Consensus 296 ~r~~~~~~~~~~lvvID---------yLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~i~Vi~l 350 (421)
T TIGR03600 296 ARRIKRKKGGLDLIVVD---------YIQLMAPTRGRDRNEELGGISRGLKALAKELDVPVVLL 350 (421)
T ss_pred HHHHHHhcCCCCEEEEe---------cccccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEe
Confidence 33344556 79999983 3332221 23456788899999999999998876
No 54
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=52.38 E-value=15 Score=34.37 Aligned_cols=25 Identities=8% Similarity=0.317 Sum_probs=17.1
Q ss_pred HHHHcCCCeEEEEeccCcCCcchhhhh
Q 019524 184 AFVQLNISRVMIIDLDAHQGNGHEKDF 210 (339)
Q Consensus 184 l~~~~~~~RV~IiD~DvHHGnGTq~if 210 (339)
++.+.| +||++||+|.+..+ |.-++
T Consensus 24 ~La~~G-~rVllvD~Dpq~~~-~~~l~ 48 (273)
T PRK13232 24 ALSTMG-NKILLVGCDPKADS-TRMLL 48 (273)
T ss_pred HHHhhC-CCeEEEeccccccc-chhhc
Confidence 333445 69999999999765 44433
No 55
>CHL00175 minD septum-site determining protein; Validated
Probab=51.92 E-value=18 Score=33.89 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=17.1
Q ss_pred HHHcCCCeEEEEeccCcCCcchh
Q 019524 185 FVQLNISRVMIIDLDAHQGNGHE 207 (339)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHGnGTq 207 (339)
+.+.| +||++||.|...||-+.
T Consensus 40 La~~g-~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 40 IARLG-YRVALIDADIGLRNLDL 61 (281)
T ss_pred HHhCC-CeEEEEeCCCCCCChhh
Confidence 33445 69999999999988664
No 56
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=51.54 E-value=40 Score=32.27 Aligned_cols=60 Identities=13% Similarity=0.215 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccC----HHHHHHHHHHHHHHHhhC--CCCEEEEeCCCC
Q 019524 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKIS----PDGIAARDEKTFRFARSR--NIPIVMLTSGPI 322 (339)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt----~~g~~~~~~~l~~~a~~~--~~p~v~vleGGY 322 (339)
+.+.+++++++||++|+ .|-|+...+.-...+|. +.-|-+-. +.|+.+ +.==+++..|.=
T Consensus 143 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaV----k~aR~y~~~~D~LVIFAGAC 208 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVI-TGHDAYSKNKGNYMDLNAYRHSKYFVETV----REARKYVPSLDQLVIFAGAC 208 (283)
T ss_pred HHHHHHHHHhCCCEEEE-eCchhhhcCCCChhhhhhhhhhHHHHHHH----HHHHhcCCCcccEEEEcchh
Confidence 45667889999999876 89999986644433332 23333332 333443 222456666655
No 57
>PRK06321 replicative DNA helicase; Provisional
Probab=51.46 E-value=42 Score=34.50 Aligned_cols=50 Identities=26% Similarity=0.320 Sum_probs=35.6
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcc---------CHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLKI---------SPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l---------t~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
.+..+.++++.++||| |.|+-|.- ....+.++.+.|..+|+++++||+++
T Consensus 327 ~~r~~~~~~~~~lvvI---------DyLql~~~~~~~~~~~~r~~ei~~Isr~LK~lAkel~vpVi~l 385 (472)
T PRK06321 327 RARRMKESYDIQFLII---------DYLQLLSGSGNLRNSESRQTEISEISRMLKNLARELNIPILCL 385 (472)
T ss_pred HHHHHHHhcCCCEEEE---------cchHHcCCCCccCCcchHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 3344456678899987 55544421 13567789999999999999998865
No 58
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=51.33 E-value=40 Score=30.26 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=27.2
Q ss_pred ccCHHHHHHHHHHHHHHHhhCCCCEEEEeCC
Q 019524 290 KISPDGIAARDEKTFRFARSRNIPIVMLTSG 320 (339)
Q Consensus 290 ~lt~~g~~~~~~~l~~~a~~~~~p~v~vleG 320 (339)
.++++..+.+++.+++++++++++.++.++|
T Consensus 26 ~~~p~~~~e~a~~vld~a~~~gv~~iitLgG 56 (188)
T TIGR00162 26 SLSPEGQYELVNAIIDVAKKYGARMIYTLGG 56 (188)
T ss_pred CCChhhHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5677878889999999999999998888877
No 59
>PHA02518 ParA-like protein; Provisional
Probab=50.55 E-value=21 Score=31.34 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=15.6
Q ss_pred HHHHcCCCeEEEEeccCcCCcchhh
Q 019524 184 AFVQLNISRVMIIDLDAHQGNGHEK 208 (339)
Q Consensus 184 l~~~~~~~RV~IiD~DvHHGnGTq~ 208 (339)
++.+.| +||++||+|. +++-++.
T Consensus 24 ~la~~g-~~vlliD~D~-q~~~~~~ 46 (211)
T PHA02518 24 WLHADG-HKVLLVDLDP-QGSSTDW 46 (211)
T ss_pred HHHhCC-CeEEEEeCCC-CCChHHH
Confidence 334445 6999999996 5665553
No 60
>PRK05748 replicative DNA helicase; Provisional
Probab=50.43 E-value=40 Score=34.13 Aligned_cols=49 Identities=12% Similarity=0.233 Sum_probs=34.5
Q ss_pred HHHHHhhc-CCCEEEEEcCCCCCCCCCCCCCcc-------CHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 260 LEVAGHTF-DPELVIYNAGTDILEGDPLGMLKI-------SPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 260 l~p~~~~f-~PdlIvvsaG~D~~~~Dplg~~~l-------t~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
+..+.+++ ++++||| |.|+-+.. ....+..+.+.|..+|+++++|++++
T Consensus 305 ~r~~~~~~~~~~~vvI---------DyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~~i~vi~l 361 (448)
T PRK05748 305 CRRLAQEHGGLGLILI---------DYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPVIAL 361 (448)
T ss_pred HHHHHHhcCCCCEEEE---------ccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCeEEEe
Confidence 33444566 8999988 44544421 12457788899999999999998875
No 61
>PHA02546 47 endonuclease subunit; Provisional
Probab=50.06 E-value=99 Score=30.13 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCC
Q 019524 250 NEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPIT 323 (339)
Q Consensus 250 ~~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~ 323 (339)
+++...|++++.- +++.+||+||+ +| |..-. .-..+........+.+++...+.++|++++. |.-+
T Consensus 22 ~~~~~~l~~ii~~-a~~~~vD~Vli-aG-DlfD~----~~~~~~~~~~~~~~~l~~~L~~~gi~v~~I~-GNHD 87 (340)
T PHA02546 22 NYQLKFIKQAIEY-SKAHGITTWIQ-LG-DTFDV----RKAITQNTMNFVREKIFDLLKEAGITLHVLV-GNHD 87 (340)
T ss_pred HHHHHHHHHHHHH-HHHcCCCEEEE-CC-cccCC----CCCCCHHHHHHHHHHHHHHHHHCCCeEEEEc-cCCC
Confidence 4567788887654 47889999987 33 33211 1123344433333334444455678887765 5443
No 62
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=49.85 E-value=18 Score=33.88 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=18.1
Q ss_pred HHHHHHcCCCeEEEEeccCcCCcchhhh
Q 019524 182 HYAFVQLNISRVMIIDLDAHQGNGHEKD 209 (339)
Q Consensus 182 ~~l~~~~~~~RV~IiD~DvHHGnGTq~i 209 (339)
.+++.+.| +||++||+|. +||=|+.+
T Consensus 22 A~~La~~G-~rVLliD~Dp-q~n~t~~l 47 (279)
T PRK13230 22 AAALAESG-KKVLVVGCDP-KADCTRNL 47 (279)
T ss_pred HHHHHhCC-CEEEEEeeCC-cccccccc
Confidence 33444556 6999999999 46666654
No 63
>PRK08006 replicative DNA helicase; Provisional
Probab=49.36 E-value=50 Score=33.94 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=33.3
Q ss_pred Hhhc-CCCEEEEEcCCCCCCCCCCCCCcc------CHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 264 GHTF-DPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 264 ~~~f-~PdlIvvsaG~D~~~~Dplg~~~l------t~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
.+++ +.++||| |.|+-+.. ....+.++++.|..+|+++++||+++-
T Consensus 331 ~~~~~~~~lvvI---------DYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~Ls 383 (471)
T PRK08006 331 FREHGGLSLIMI---------DYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALS 383 (471)
T ss_pred HHhcCCCCEEEE---------ccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 3455 6888887 55443322 245688899999999999999988763
No 64
>PRK05279 N-acetylglutamate synthase; Validated
Probab=49.07 E-value=67 Score=32.39 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCChhHHH
Q 019524 250 NEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVL 328 (339)
Q Consensus 250 ~~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~~~~~ 328 (339)
.+|...|.+.+ |-+++|+=+.+||-.|-.+..++ .+..+.+.+..+ .+.+.++|+|.|||+.....+
T Consensus 7 ~~~~~~~~~~~-~~i~~~~~~~~VIk~GG~~l~~~----------~~~~~~~~i~~l-~~~g~~~VlVHGgg~~i~~~~ 73 (441)
T PRK05279 7 TEFVDWFRHSA-PYINAHRGKTFVIMLGGEAIAHG----------NFSNIVHDIALL-HSLGIRLVLVHGARPQIEEQL 73 (441)
T ss_pred hHHHHHHHHHh-HHHHHhCCCEEEEEECchhccCh----------hHHHHHHHHHHH-HHCCCeEEEECCCCHHHHHHH
Confidence 45788888885 55589998899999987776533 133333444433 335789999999999765433
No 65
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=48.58 E-value=79 Score=31.17 Aligned_cols=67 Identities=27% Similarity=0.363 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCh
Q 019524 248 TTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324 (339)
Q Consensus 248 ~d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~ 324 (339)
-.+++..+|.+++.-+ .+-++|+||++ ||=+=.-+-+++.-....+.+.++. ..++|++++ .|.-+.
T Consensus 21 r~~d~~~~f~~~l~~a-~~~~vD~vliA-------GDlFd~~~Ps~~a~~~~~~~l~~l~-~~~Ipv~~I-~GNHD~ 87 (390)
T COG0420 21 RLEDQKKAFDELLEIA-KEEKVDFVLIA-------GDLFDTNNPSPRALKLFLEALRRLK-DAGIPVVVI-AGNHDS 87 (390)
T ss_pred chHHHHHHHHHHHHHH-HHccCCEEEEc-------cccccCCCCCHHHHHHHHHHHHHhc-cCCCcEEEe-cCCCCc
Confidence 3677889999988755 78899999973 5655556677887777776665543 367887654 555533
No 66
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=48.39 E-value=24 Score=30.04 Aligned_cols=20 Identities=35% Similarity=0.330 Sum_probs=15.9
Q ss_pred HcCCCeEEEEeccCcCCcchh
Q 019524 187 QLNISRVMIIDLDAHQGNGHE 207 (339)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq 207 (339)
+.| +||++||.|...||-+.
T Consensus 26 ~~g-~~vllvD~D~~~~~~~~ 45 (179)
T cd02036 26 QLG-YKVVLIDADLGLRNLDL 45 (179)
T ss_pred hCC-CeEEEEeCCCCCCCchh
Confidence 345 69999999999887655
No 67
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=47.82 E-value=1.2e+02 Score=26.26 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEE-------cCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCC
Q 019524 249 TNEYLKKLDEALEVAGHTFDPELVIYN-------AGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320 (339)
Q Consensus 249 d~~yl~a~~~~l~p~~~~f~PdlIvvs-------aG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleG 320 (339)
+.+.+..+.+.+..+-++-....||+. +|.|...--......-....|....+.+......+..|++++..|
T Consensus 24 ~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G 102 (195)
T cd06558 24 SLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNG 102 (195)
T ss_pred CHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 556677777777766554556677774 444433211000000012344444445555555678899987764
No 68
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.47 E-value=1.1e+02 Score=28.40 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCC
Q 019524 251 EYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPIT 323 (339)
Q Consensus 251 ~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~ 323 (339)
+....|++++. .+.+.+||+||++ ||=+-...-+......+.+.+.++.+...+|++++ -|.-+
T Consensus 23 ~~~~~l~~l~~-~~~~~~~D~lli~-------GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i-~GNHD 86 (253)
T TIGR00619 23 EQKAFLDDLLE-FAKAEQIDALLVA-------GDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVI-SGNHD 86 (253)
T ss_pred HHHHHHHHHHH-HHHHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEE-ccCCC
Confidence 34566777665 4467799998873 33333323333333333444444443222777665 44443
No 69
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=46.97 E-value=29 Score=31.98 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=15.2
Q ss_pred HHcCCCeEEEEeccCcCCcchhh
Q 019524 186 VQLNISRVMIIDLDAHQGNGHEK 208 (339)
Q Consensus 186 ~~~~~~RV~IiD~DvHHGnGTq~ 208 (339)
.+.| +||++||+|. +||-|..
T Consensus 26 a~~G-~kVlliD~Dp-q~n~~~~ 46 (270)
T cd02040 26 AEMG-KKVMIVGCDP-KADSTRL 46 (270)
T ss_pred HhCC-CeEEEEEcCC-CCCchhh
Confidence 3345 6999999999 4665553
No 70
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=46.95 E-value=29 Score=26.97 Aligned_cols=55 Identities=13% Similarity=0.298 Sum_probs=31.1
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHhhcCC-CEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 019524 241 VEVVSGTTTNEYLKKLDEALEVAGHTFDP-ELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (339)
Q Consensus 241 vPL~~g~~d~~yl~a~~~~l~p~~~~f~P-dlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vle 319 (339)
|-+|||++|.- +.+++.+ .. ..|+|..-.+. +..+- ++..+++++.++|++-+.|
T Consensus 6 iD~PPGTgD~~-l~~~~~~--------~~~g~ivVTTPq~l-----------a~~dv----~r~~~~~~~~~vpilGvVE 61 (81)
T PF10609_consen 6 IDLPPGTGDEH-LTLMQYL--------PIDGAIVVTTPQEL-----------ALADV----RRAIDMFRKLNVPILGVVE 61 (81)
T ss_dssp EE--SCSSSHH-HHHHHHH----------SEEEEEE-CCC-------------HHHH----HHHHHHHHCTT-EEEEEEE
T ss_pred EeCCCCCCcHH-HHHHHhC--------CCCeEEEEeCCHHH-----------HHHHH----HHHHHHHHhcCCCcEEEEE
Confidence 45799998875 4444432 23 47888776443 33333 4466778888999998776
No 71
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=46.13 E-value=4.2 Score=38.55 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=28.5
Q ss_pred HHHHHhhcCCCEEEEEcCC---CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 260 LEVAGHTFDPELVIYNAGT---DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~---D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
+..++++++||+||..||+ |..+.+|...+.+.. ..++.|.+.|.+.+.|++.+
T Consensus 43 ~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~----~~~~~la~~~~~~~~~li~~ 99 (286)
T PF04321_consen 43 VAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINV----DATKNLAEACKERGARLIHI 99 (286)
T ss_dssp HHHHHHHH--SEEEE------HHHHHHSHHHHHHHHT----HHHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhh----HHHHHHHHHHHHcCCcEEEe
Confidence 3445578899999999986 444445433222222 44556777888888888653
No 72
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=45.63 E-value=1.2e+02 Score=29.91 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCh
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~ 324 (339)
..+.+.|..+.++++|++|+|..+. ....+|. +..+.+ ++-++.+.|++.+--.||..
T Consensus 73 ~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdD----------i~~v~~---~~~~~~~~~vi~v~t~gf~g 131 (406)
T cd01967 73 KKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDD----------IEAVAK---EASKELGIPVIPVNCEGFRG 131 (406)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCchhhhccC----------HHHHHH---HHHHhhCCCEEEEeCCCeeC
Confidence 4566667777789999987765553 5555553 222222 22234578999999888844
No 73
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=45.30 E-value=37 Score=27.64 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEEcCCCC
Q 019524 253 LKKLDEALEVAGHTFDPELVIYNAGTDI 280 (339)
Q Consensus 253 l~a~~~~l~p~~~~f~PdlIvvsaG~D~ 280 (339)
...+.+.|..++++++||+|+.-...|.
T Consensus 85 ~~~~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 85 WEELVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp HHHHHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 3445556677789999999999888776
No 74
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=45.18 E-value=39 Score=31.22 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhh-cCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 254 KKLDEALEVAGHT-FDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 254 ~a~~~~l~p~~~~-f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
..+...+..+..+ .+.++|||--=--.-..++. .=..+.+..+.+.|.++|+++++|++++
T Consensus 115 ~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~---~~~~~~~~~i~~~Lk~lA~~~~i~vi~~ 176 (259)
T PF03796_consen 115 DDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSS---DNRRQEIGEISRELKALAKELNIPVIAL 176 (259)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSS---SCCHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHhhccCCCEEEechHHHhcCCCCC---CCHHHHHHHHHHHHHHHHHHcCCeEEEc
Confidence 3344445555555 77788887321111111111 1135678888899999999999998875
No 75
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=44.90 E-value=98 Score=31.56 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=39.4
Q ss_pred HhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 264 GHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 264 ~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
+++-+|+++||-.=.= ...+-+..--=|....++.+..|+++|++.++++++|+
T Consensus 164 l~~~~p~lvVIDSIQT-~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 164 LEQEKPDLVVIDSIQT-LYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred HHhcCCCEEEEeccce-eecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3668999999854322 23333444444667789999999999999999988775
No 76
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=44.50 E-value=41 Score=26.81 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=26.5
Q ss_pred HHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCC
Q 019524 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPI 322 (339)
Q Consensus 262 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY 322 (339)
..+++++||+|.+|+-+ ...+... ..+.+.+++.+-.+.++.+|.+
T Consensus 45 ~~~~~~~pd~V~iS~~~--------------~~~~~~~-~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 45 EALRAERPDVVGISVSM--------------TPNLPEA-KRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHTTCSEEEEEESS--------------STHHHHH-HHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHhcCCCcEEEEEccC--------------cCcHHHH-HHHHHHHHhcCCCCEEEEECCc
Confidence 34578899999998741 1112222 3344445555444566666666
No 77
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=44.09 E-value=98 Score=28.86 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=36.3
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcc-CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 019524 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKI-SPDGIAARDEKTFRFARSRNIPIVMLTS 319 (339)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l-t~~g~~~~~~~l~~~a~~~~~p~v~vle 319 (339)
..+...+++++|++||| |++..+.. ....+.+....+..++++.+..++++-+
T Consensus 121 ~~l~~~i~~~~~~~vVI---------DSls~l~~~~~~~~r~~~~~L~~~lk~~~~t~ll~~e 174 (259)
T TIGR03878 121 ATLAYAIKEYKVKNTVI---------DSITGLYEAKEMMAREIVRQLFNFMKKWYQTALFVSQ 174 (259)
T ss_pred HHHHHHHHhhCCCEEEE---------cCchHhcccchHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 33445568899999987 66654322 2344556666678888888988888765
No 78
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=43.76 E-value=46 Score=34.48 Aligned_cols=57 Identities=14% Similarity=0.269 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCh
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~ 324 (339)
..+.+.|..+.++|+|++|+|.... ....+|.++.+ .+ ++ +..+.|++.+--.||..
T Consensus 71 ~~L~~aI~~~~~~~~P~~I~V~sTC~selIGdDi~~~----------~~---~~-~~~~~pvi~v~t~gf~g 128 (511)
T TIGR01278 71 TRLVDTVRRVDDRFKPDLIVVTPSCTSSLLQEDLGNL----------AA---AA-GLDKSKVIVADVNAYRR 128 (511)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHH----------HH---Hh-ccCCCcEEEecCCCccc
Confidence 4566667777789999988887776 66666654431 11 11 11268999998889844
No 79
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=43.41 E-value=63 Score=31.50 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCCeEEEEeccCcCCcchhhhhc
Q 019524 177 ISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211 (339)
Q Consensus 177 vAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~ 211 (339)
.+.++.++.++.+.+||+||+-|.=.|.|..+.|.
T Consensus 135 ~~~~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~ 169 (366)
T COG0683 135 AAAAADYLVKKGGKKRVAIIGDDYAYGEGLADAFK 169 (366)
T ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCcchhHHHHHH
Confidence 45577888888776799999999999999999884
No 80
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=42.95 E-value=28 Score=32.30 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=15.2
Q ss_pred HcCCCeEEEEeccCcCCcchhhh
Q 019524 187 QLNISRVMIIDLDAHQGNGHEKD 209 (339)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~i 209 (339)
+.| +||++||+|. +||-|+.+
T Consensus 26 ~~g-~rVLliD~D~-q~~~~~~l 46 (268)
T TIGR01281 26 KLG-KRVLQIGCDP-KHDSTFTL 46 (268)
T ss_pred hCC-CeEEEEecCc-ccccccee
Confidence 345 6999999997 56766533
No 81
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=42.93 E-value=1.5e+02 Score=28.62 Aligned_cols=110 Identities=23% Similarity=0.311 Sum_probs=59.8
Q ss_pred HHHHcCCCeEEEEeccC----------------cCCcchhhhhcCCCcEEEEEeeC---C----CCCCCCcc--------
Q 019524 184 AFVQLNISRVMIIDLDA----------------HQGNGHEKDFSSDSRVYILDMFN---P----GIYPRDYE-------- 232 (339)
Q Consensus 184 l~~~~~~~RV~IiD~Dv----------------HHGnGTq~if~~d~~Vl~iSiH~---~----~~yP~tg~-------- 232 (339)
++...+ .||.++|+|+ |.++....=.+.+.++-.+|+=- . -.|=|...
T Consensus 71 ~La~~g-~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qfl 149 (300)
T KOG3022|consen 71 ALASEG-KKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFL 149 (300)
T ss_pred HHhcCC-CcEEEEeecccCCCchhhcCCCCceeeecCCCceeeeecCCeEEEEeeeecCCCCccceeechHHHHHHHHHH
Confidence 334455 6999999997 55444444446667777777631 1 13322210
Q ss_pred ----cCCccccccccCCCCChHHHHHHHHHHHHHHHhhcCCC---EEEEEcCCCCCCCCCCCCCccCHHHHHHHH-HHHH
Q 019524 233 ----ARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPE---LVIYNAGTDILEGDPLGMLKISPDGIAARD-EKTF 304 (339)
Q Consensus 233 ----~~~~~~~NvPL~~g~~d~~yl~a~~~~l~p~~~~f~Pd---lIvvsaG~D~~~~Dplg~~~lt~~g~~~~~-~~l~ 304 (339)
.++--.+=|-.|||++|+ .+.+.+ |-++ .|||. |++..+-++ ++-.
T Consensus 150 k~vdwg~lDyLviDtPPGtsDe-hls~~~---------~~~~~~gAviVT----------------TPQ~vAl~Dv~K~i 203 (300)
T KOG3022|consen 150 KDVDWGELDYLVIDTPPGTSDE-HLSLVQ---------FLRESDGAVIVT----------------TPQEVALQDVRKEI 203 (300)
T ss_pred hcCCCCCcCEEEEeCCCCCChh-hhheee---------cccccCceEEEe----------------CchhhhhHHHHhhh
Confidence 011112334568998775 333222 2222 56664 344444332 4455
Q ss_pred HHHhhCCCCEEEEeCC
Q 019524 305 RFARSRNIPIVMLTSG 320 (339)
Q Consensus 305 ~~a~~~~~p~v~vleG 320 (339)
++++..++|++-+.|-
T Consensus 204 ~fc~K~~I~ilGvVEN 219 (300)
T KOG3022|consen 204 DFCRKAGIPILGVVEN 219 (300)
T ss_pred hhhhhcCCceEEEEec
Confidence 7888889999988773
No 82
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=42.74 E-value=43 Score=29.96 Aligned_cols=52 Identities=19% Similarity=0.421 Sum_probs=33.8
Q ss_pred HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhC--CCCEEEEeCCCC
Q 019524 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIVMLTSGPI 322 (339)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~--~~p~v~vleGGY 322 (339)
+...+.+.++|++++.+|.- .+.+.|.++...+.+..++. ..|++++--=+|
T Consensus 51 ~a~~ia~~~a~~~~ld~~~N-----------~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~ 104 (178)
T PF14606_consen 51 VADLIAEIDADLIVLDCGPN-----------MSPEEFRERLDGFVKTIREAHPDTPILLVSPIPY 104 (178)
T ss_dssp HHHHHHHS--SEEEEEESHH-----------CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----
T ss_pred HHHHHhcCCCCEEEEEeecC-----------CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCc
Confidence 33445667899999999966 57778888777777777664 689998874444
No 83
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=42.31 E-value=30 Score=32.12 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=15.1
Q ss_pred HcCCCeEEEEeccCcCCcchhhh
Q 019524 187 QLNISRVMIIDLDAHQGNGHEKD 209 (339)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq~i 209 (339)
+.| +||++||.|- +||=|+.+
T Consensus 28 ~~G-~kVLliD~Dp-q~~~t~~l 48 (270)
T PRK13185 28 KLG-KKVLQIGCDP-KHDSTFTL 48 (270)
T ss_pred HCC-CeEEEEeccC-Ccchhhhh
Confidence 345 6999999997 56666543
No 84
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=42.20 E-value=1.2e+02 Score=26.02 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=12.0
Q ss_pred HHHHHHhhcCCCEEEE
Q 019524 259 ALEVAGHTFDPELVIY 274 (339)
Q Consensus 259 ~l~p~~~~f~PdlIvv 274 (339)
.+..++++++||+||+
T Consensus 29 ~~~~~i~~~~pd~vv~ 44 (156)
T cd08165 29 SFQTSLWLLQPDVVFV 44 (156)
T ss_pred HHHHHHHhcCCCEEEE
Confidence 4445667899999886
No 85
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=42.10 E-value=87 Score=28.54 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=32.4
Q ss_pred hcCCCEEEEEcCCCCCCCCCCCCC----ccCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 019524 266 TFDPELVIYNAGTDILEGDPLGML----KISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (339)
Q Consensus 266 ~f~PdlIvvsaG~D~~~~Dplg~~----~lt~~g~~~~~~~l~~~a~~~~~p~v~vle 319 (339)
..+|++||+ ||+..+ .........+.+.+.+++++.++.++++.-
T Consensus 109 ~~~~~lvvi---------Dpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H 157 (239)
T cd01125 109 IRRIDLVVI---------DPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHH 157 (239)
T ss_pred hcCCCEEEE---------CChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 579999998 566543 345666777777888888888887777654
No 86
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=42.01 E-value=1.4e+02 Score=27.50 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=36.5
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 246 GTTTNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 246 g~~d~~yl~a~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
+.=+.+.+..+.+++..+.++=+...||+ ++|.|...-..... .-....+....+.+++....+..|+|+..
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~kpvIAav 101 (257)
T PRK07658 23 NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTE-AEQATELAQLGQVTFERVEKFSKPVIAAI 101 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCc-hhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 44467778888888876643333334554 55666532110000 00111222223334443445788998766
Q ss_pred CC
Q 019524 319 SG 320 (339)
Q Consensus 319 eG 320 (339)
.|
T Consensus 102 ~G 103 (257)
T PRK07658 102 HG 103 (257)
T ss_pred cC
Confidence 54
No 87
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=41.13 E-value=33 Score=31.18 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=12.3
Q ss_pred CeEEEEeccCcCCc
Q 019524 191 SRVMIIDLDAHQGN 204 (339)
Q Consensus 191 ~RV~IiD~DvHHGn 204 (339)
+||++||.|...||
T Consensus 31 ~~vlliD~D~~~~~ 44 (261)
T TIGR01968 31 KKVVLIDADIGLRN 44 (261)
T ss_pred CeEEEEECCCCCCC
Confidence 69999999998766
No 88
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=40.90 E-value=1.2e+02 Score=31.62 Aligned_cols=58 Identities=5% Similarity=0.160 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCh
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~ 324 (339)
..|.+.|..+.++|+||+|+|..+. =...+| +...+.+.+ -++.+.|++.+--.||..
T Consensus 71 ~kL~~~I~~~~~~~~P~~I~V~tTC~~eiIGD----------Di~~v~~~~---~~~~~~pVi~v~t~~f~g 129 (513)
T CHL00076 71 EKVVDNITRKDKEERPDLIVLTPTCTSSILQE----------DLQNFVDRA---SIESDSDVILADVNHYRV 129 (513)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCchhhhhc----------CHHHHHHHh---hcccCCCEEEeCCCCCcc
Confidence 4455666667799999999997774 112222 222222222 123578999999999953
No 89
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=40.56 E-value=37 Score=30.34 Aligned_cols=23 Identities=9% Similarity=0.270 Sum_probs=15.7
Q ss_pred HHcCCCeEEEEeccCcCCcchhhhh
Q 019524 186 VQLNISRVMIIDLDAHQGNGHEKDF 210 (339)
Q Consensus 186 ~~~~~~RV~IiD~DvHHGnGTq~if 210 (339)
.+.| +||++||.|.. ||-|..++
T Consensus 25 a~~G-~rvLliD~D~q-~~~~~~~~ 47 (212)
T cd02117 25 AEMG-KKVLQVGCDPK-ADSTRLLL 47 (212)
T ss_pred HHCC-CcEEEEeCCCC-CCcccccc
Confidence 3345 69999999965 66665443
No 90
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=40.39 E-value=32 Score=32.78 Aligned_cols=24 Identities=13% Similarity=0.382 Sum_probs=16.8
Q ss_pred HHHcCCCeEEEEeccCcCCcchhhhh
Q 019524 185 FVQLNISRVMIIDLDAHQGNGHEKDF 210 (339)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHGnGTq~if 210 (339)
+.+.| +||++||+|.+..+ |+-+|
T Consensus 28 la~~g-~kVLliD~D~q~~~-~~~~~ 51 (295)
T PRK13234 28 LVEMG-QKILIVGCDPKADS-TRLIL 51 (295)
T ss_pred HHHCC-CeEEEEeccccccc-ccccc
Confidence 33445 69999999998655 54444
No 91
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=40.36 E-value=2.1e+02 Score=26.37 Aligned_cols=67 Identities=16% Similarity=0.270 Sum_probs=35.6
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 246 GTTTNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 246 g~~d~~yl~a~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
+.=+.+.+..+.+.+..+.+. ....||+ |+|.|.... .....+......+++....+..|+|+..
T Consensus 22 Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~-------~~~~~~~~~~~~~~~~l~~~~kP~Iaav 93 (243)
T PRK07854 22 NALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGD-------VYADDFPDALIEMLHAIDAAPVPVIAAI 93 (243)
T ss_pred cCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccc-------hhHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 344666777777777765433 4445654 556665421 1122332222233333345688998877
Q ss_pred CC
Q 019524 319 SG 320 (339)
Q Consensus 319 eG 320 (339)
.|
T Consensus 94 ~G 95 (243)
T PRK07854 94 NG 95 (243)
T ss_pred cC
Confidence 54
No 92
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=40.32 E-value=61 Score=30.22 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCh
Q 019524 268 DPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324 (339)
Q Consensus 268 ~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~ 324 (339)
.+|+||+.- |.-. .|++|-++++..++++|++++.+-++.| |||..
T Consensus 83 ~~Dliil~G--d~Q~--------~~~~gqyel~~~~Ld~a~e~g~~~IyTL-GGy~v 128 (258)
T COG2047 83 ERDLIILVG--DTQA--------TSSEGQYELTGKILDIAKEFGARMIYTL-GGYGV 128 (258)
T ss_pred CCcEEEEec--cccc--------cCcchhHHHHHHHHHHHHHcCCcEEEEe-cCccc
Confidence 568888731 2222 4566677788889999999999999888 56743
No 93
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=39.85 E-value=84 Score=25.60 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=26.6
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCC
Q 019524 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPI 322 (339)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY 322 (339)
+.+..+.++++||+|.+|+ +.-+.... ..+.+.+++.+..+.++++|.+
T Consensus 29 ~~~~~~~~~~~pdiv~~S~------------~~~~~~~~----~~~~~~ik~~~p~~~iv~GG~~ 77 (127)
T cd02068 29 DIVEDIKELLKPDVVGISL------------MTSAIYEA----LELAKIAKEVLPNVIVVVGGPH 77 (127)
T ss_pred HHHHHHHHhcCCCEEEEee------------ccccHHHH----HHHHHHHHHHCCCCEEEECCcc
Confidence 3444443449999999973 11122222 3344555554444666677766
No 94
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=39.85 E-value=1.1e+02 Score=30.25 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeC-CCCCh
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS-GPITS 324 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vle-GGY~~ 324 (339)
+.|++.|..+.+.|+|++|+|..+. -...+|.+ ..+.+ + + +.++|++.|=- ||+.+
T Consensus 61 eKL~eaI~ea~e~y~P~lI~VvTTCvseIIGDDI----------eaVvk---E-~-~~giPVI~V~t~GGfGd 118 (352)
T TIGR03282 61 EKLVKVIRYAEEKFKPELIGVVGTCASMIIGEDL----------KEAVD---E-A-DVDAEVIAVEVHAGFGD 118 (352)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCchhhccCCH----------HHHHH---H-h-CCCCCEEEEECCCCCcc
Confidence 3556667777899999998876664 44444432 22211 1 1 35789999965 88844
No 95
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=39.57 E-value=52 Score=28.45 Aligned_cols=52 Identities=19% Similarity=0.390 Sum_probs=26.2
Q ss_pred HHHhh-cCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 262 VAGHT-FDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 262 p~~~~-f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
..+++ ++|++|||-.=.+.+..| -+ +...+.++.+.+.++|+++++.++++.
T Consensus 134 ~~~~~~~~~~lvviD~l~~~~~~~----~~-~~~~~~~~~~~l~~la~~~~~~vi~v~ 186 (193)
T PF13481_consen 134 AALKELYGPDLVVIDPLQSLHDGD----EN-SNSAVAQLMQELKRLAKEYGVAVILVH 186 (193)
T ss_dssp HHHTT----SEEEEE-GGGG--S-----TT--HHHHHHHHHHHHHHHHHH--EEEEEE
T ss_pred HHHhhcCCCcEEEEcCHHHHhcCC----CC-CHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 34455 899999983222222221 11 233446777888899988888776653
No 96
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=39.45 E-value=22 Score=30.74 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.0
Q ss_pred CeEEEEeccCcCCcc
Q 019524 191 SRVMIIDLDAHQGNG 205 (339)
Q Consensus 191 ~RV~IiD~DvHHGnG 205 (339)
+||++||.|.+.+|-
T Consensus 25 ~~vlliD~D~~~~~~ 39 (179)
T cd03110 25 KNVVLADCDVDAPNL 39 (179)
T ss_pred hCcEEEECCCCCCch
Confidence 599999999998664
No 97
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=39.06 E-value=55 Score=31.46 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=22.4
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCCCCCCCC
Q 019524 258 EALEVAGHTFDPELVIYNAGTDILEGDPL 286 (339)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~D~~~~Dpl 286 (339)
+.+..++++++||++|+ .|-|+...+.-
T Consensus 144 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~ 171 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVI-TGHDGYLKNKK 171 (287)
T ss_pred HHHHHHHHHcCCCEEEE-eCchhhhcCCC
Confidence 45667889999999876 99999877753
No 98
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=38.86 E-value=98 Score=31.23 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=29.4
Q ss_pred ccccccCCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCE
Q 019524 238 DQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPI 314 (339)
Q Consensus 238 ~~NvPL~~g~~d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~ 314 (339)
.++.|+.+..+.-+|- .+..++++++|++|++.+-. -+-+-+|.+ +.++|++.|.-+
T Consensus 144 ~~~y~~d~~~~~ID~d-----~l~~~a~~~kPklIi~G~S~-----------y~~~~d~~~----~reIad~vga~l 200 (399)
T PF00464_consen 144 SVPYPVDPDTGLIDYD-----ELEKLAKEHKPKLIICGASS-----------YPRPIDFKR----FREIADEVGAYL 200 (399)
T ss_dssp EEEEEB-TTTSSB-HH-----HHHHHHHHH--SEEEEE-SS-----------TSS---HHH----HHHHHHHTT-EE
T ss_pred EEeeeeecCCCeECHH-----HHHHHHhhcCCCEEEECchh-----------ccCccCHHH----HHHHHHhcCcEE
Confidence 3567777677777773 34456688999999974431 222445654 455667665433
No 99
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=38.86 E-value=64 Score=32.31 Aligned_cols=58 Identities=10% Similarity=0.236 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCh
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~ 324 (339)
..+++.+..+.++|+|++|+|.... -...+|. ...+.+. +.++.+.|++.+--.||..
T Consensus 70 ~~L~~aI~~i~~~~~P~~I~V~tTC~se~IGDD----------i~~v~~~---~~~~~~~pVi~v~tpgf~g 128 (407)
T TIGR01279 70 EELDRVVEQIKRDRNPSVIFLLSSCTPEVIKMD----------LEGLAER---LSTNFGVPVLFAPASGLDY 128 (407)
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCchHHHHHhh----------HHHHHHH---HHHhhCCCEEEeeCCCccc
Confidence 4566677777789999999887653 3333332 2222222 1222467888877777743
No 100
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=38.79 E-value=74 Score=24.45 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=14.5
Q ss_pred HhhCCCCEEEEeCCCCChh
Q 019524 307 ARSRNIPIVMLTSGPITSE 325 (339)
Q Consensus 307 a~~~~~p~v~vleGGY~~~ 325 (339)
....|.+=|.++.|||+.+
T Consensus 92 l~~~g~~~v~~l~GG~~~w 110 (113)
T PF00581_consen 92 LKKLGFKNVYILDGGFEAW 110 (113)
T ss_dssp HHHTTTSSEEEETTHHHHH
T ss_pred HHHcCCCCEEEecChHHHH
Confidence 3446777789999999764
No 101
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=38.73 E-value=1.6e+02 Score=27.27 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=17.5
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCEEEE
Q 019524 246 GTTTNEYLKKLDEALEVAGHTFDPELVIY 274 (339)
Q Consensus 246 g~~d~~yl~a~~~~l~p~~~~f~PdlIvv 274 (339)
+.=+.+.+..+.+++..+.++-....||+
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vVl 53 (257)
T PRK06495 25 NALSRELRDELIAVFDEISERPDVRVVVL 53 (257)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCceEEEE
Confidence 44467777888888776644333344555
No 102
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=38.63 E-value=44 Score=30.21 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=12.9
Q ss_pred HHHcCCCeEEEEeccCcCCc
Q 019524 185 FVQLNISRVMIIDLDAHQGN 204 (339)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHGn 204 (339)
+.+.| +||++||.|.. |+
T Consensus 26 la~~g-~~VlliD~D~q-~~ 43 (246)
T TIGR03371 26 LKLLG-EPVLAIDLDPQ-NL 43 (246)
T ss_pred HHhCC-CcEEEEeCCCc-ch
Confidence 33445 69999999983 44
No 103
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=38.61 E-value=36 Score=32.55 Aligned_cols=18 Identities=17% Similarity=0.446 Sum_probs=13.6
Q ss_pred HHHcCCCeEEEEeccCcCC
Q 019524 185 FVQLNISRVMIIDLDAHQG 203 (339)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHG 203 (339)
+.+.| +||++||+|...+
T Consensus 24 La~~g-~rVLlID~Dpq~~ 41 (296)
T TIGR02016 24 MAEMG-KRVLQLGCDPKHD 41 (296)
T ss_pred HHHCC-CeEEEEEecCCCC
Confidence 33345 6999999999864
No 104
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=38.51 E-value=68 Score=25.45 Aligned_cols=14 Identities=43% Similarity=0.862 Sum_probs=13.2
Q ss_pred CeEEEEeccCcCCc
Q 019524 191 SRVMIIDLDAHQGN 204 (339)
Q Consensus 191 ~RV~IiD~DvHHGn 204 (339)
++|+++|.|.++++
T Consensus 30 ~~~~l~d~d~~~~~ 43 (106)
T cd03111 30 RRVLLVDLDLQFGD 43 (106)
T ss_pred CcEEEEECCCCCCC
Confidence 69999999999987
No 105
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=38.10 E-value=87 Score=31.81 Aligned_cols=57 Identities=25% Similarity=0.246 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCh
Q 019524 255 KLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324 (339)
Q Consensus 255 a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~ 324 (339)
.|.+.|..+.++|+|++|+|.... ....+|.+ ..+.+. +-++.+.|++.|--.||..
T Consensus 108 kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi----------~~v~~e---~~~~~~~~vi~v~t~gf~g 165 (456)
T TIGR01283 108 KLFHAIREIVERYHPPAVFVYSTCVPGLIGDDL----------EAVCKA---AAEKTGIPVIPVDSEGFYG 165 (456)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCChHHHhcCCH----------HHHHHH---HHHHhCCCEEEEECCCCcc
Confidence 445556667788999987665543 55555533 222222 2233589999999999843
No 106
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=37.87 E-value=11 Score=27.80 Aligned_cols=8 Identities=38% Similarity=1.007 Sum_probs=6.7
Q ss_pred cccccchH
Q 019524 170 GFCAYADI 177 (339)
Q Consensus 170 GFC~fNnv 177 (339)
=||||||-
T Consensus 17 KFcYyNNy 24 (63)
T PF02701_consen 17 KFCYYNNY 24 (63)
T ss_pred EEEeecCC
Confidence 59999994
No 107
>PRK09482 flap endonuclease-like protein; Provisional
Probab=37.42 E-value=3.1e+02 Score=25.88 Aligned_cols=77 Identities=10% Similarity=-0.011 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEEcCCCCCCC------CC----CCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCC
Q 019524 253 LKKLDEALEVAGHTFDPELVIYNAGTDILEG------DP----LGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPI 322 (339)
Q Consensus 253 l~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~------Dp----lg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY 322 (339)
+..|-+.+..++++++|+.|++. ||.... +- -+.=.-+++.+...-..+.+++...|+|++ ..-||
T Consensus 31 v~gf~~~l~~ll~~~~p~~i~v~--fD~~~~~~~fR~~l~p~YKa~R~~~Pe~l~~Q~~~i~~~l~~~gi~~~--~~~g~ 106 (256)
T PRK09482 31 VETCQHALDKLIRHSQPTHAVAV--FDGDARSSGWRHQLLPDYKAGRKPMPEALQQGLPAIRAAFEELGIDSW--HADGN 106 (256)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEE--EeCCCCCcccHHHHhHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCEe--ccCCc
Confidence 56677788889999999988765 776422 10 011123467777766778888888888775 67899
Q ss_pred ChhHHHHHHHH
Q 019524 323 TSEKVLALWSI 333 (339)
Q Consensus 323 ~~~~~~a~~~~ 333 (339)
.-..+++-.+.
T Consensus 107 EADDvIatla~ 117 (256)
T PRK09482 107 EADDLIATLAV 117 (256)
T ss_pred CHHHHHHHHHH
Confidence 77777665543
No 108
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=37.38 E-value=70 Score=32.40 Aligned_cols=61 Identities=8% Similarity=0.126 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhh-CCCCEEEEeCCCCCh
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS-RNIPIVMLTSGPITS 324 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~-~~~p~v~vleGGY~~ 324 (339)
..|.+.|..+.++|+|++|+|.+.. ....+|.+. .+.+.+.+-..+ .+.|++.+-..||..
T Consensus 77 ~~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~----------~v~~~~~~e~p~~~~~pvi~v~tpgf~g 139 (432)
T TIGR01285 77 EHIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDIA----------RVVRQFREKHPQHKGTAVVTVNTPDFKG 139 (432)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccccccCHH----------HHHHHHHhhcccccCCeEEEecCCCcCC
Confidence 4455666667789999987776554 556666432 222222110001 378999999999953
No 109
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=36.81 E-value=1.7e+02 Score=23.07 Aligned_cols=72 Identities=14% Similarity=0.051 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCCCeEEEEeccCcCCcchhhhhcCCCcEEEEEeeCCCCCCCCcccCCccccccccCCCCChHHHHHHH
Q 019524 177 ISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKL 256 (339)
Q Consensus 177 vAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~~yP~tg~~~~~~~~NvPL~~g~~d~~yl~a~ 256 (339)
..+.+.++++ .|. .|-++|.+++..+-.+.+-..+|++.-+|.+... . ....
T Consensus 17 l~~la~~l~~-~G~-~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~-----------------------~---~~~~ 68 (121)
T PF02310_consen 17 LLYLAAYLRK-AGH-EVDILDANVPPEELVEALRAERPDVVGISVSMTP-----------------------N---LPEA 68 (121)
T ss_dssp HHHHHHHHHH-TTB-EEEEEESSB-HHHHHHHHHHTTCSEEEEEESSST-----------------------H---HHHH
T ss_pred HHHHHHHHHH-CCC-eEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcC-----------------------c---HHHH
Confidence 3444555555 465 8999999999988888888889999999975211 0 1122
Q ss_pred HHHHHHHHhhcCCCEEEEEcC
Q 019524 257 DEALEVAGHTFDPELVIYNAG 277 (339)
Q Consensus 257 ~~~l~p~~~~f~PdlIvvsaG 277 (339)
.+++.. +++..|+.+++.-|
T Consensus 69 ~~l~~~-~k~~~p~~~iv~GG 88 (121)
T PF02310_consen 69 KRLARA-IKERNPNIPIVVGG 88 (121)
T ss_dssp HHHHHH-HHTTCTTSEEEEEE
T ss_pred HHHHHH-HHhcCCCCEEEEEC
Confidence 233333 58899998888666
No 110
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.65 E-value=1.2e+02 Score=25.93 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=23.7
Q ss_pred hcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhh
Q 019524 266 TFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS 309 (339)
Q Consensus 266 ~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~ 309 (339)
.++||+|++..|. |+.... .-+.+.|..--+.+.+.+++
T Consensus 65 ~~~pd~Vii~~G~ND~~~~~-----~~~~~~~~~~l~~li~~i~~ 104 (188)
T cd01827 65 AFNPNIVIIKLGTNDAKPQN-----WKYKDDFKKDYETMIDSFQA 104 (188)
T ss_pred ccCCCEEEEEcccCCCCCCC-----CccHHHHHHHHHHHHHHHHH
Confidence 4799999999998 655432 12345555444445454444
No 111
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=36.18 E-value=89 Score=31.07 Aligned_cols=58 Identities=12% Similarity=0.223 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCh
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~ 324 (339)
.-+++.|..+.++|+|++|+|.... ....+|.+ ..+.+ ++-++.+.|++.+--.||..
T Consensus 73 ~~L~~aI~ei~~~~~P~~I~V~sTCv~e~IGDDi----------~~v~~---~~~~~~~~pvi~v~t~gf~g 131 (396)
T cd01979 73 AELDRVVTQIKRDRNPSVIFLIGSCTTEVIKMDL----------EGAAP---RLSAEIGVPILVASASGLDY 131 (396)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCHHHHHhcCH----------HHHHH---HHhhcCCCcEEEeeCCCccc
Confidence 3455667777789999987775543 44444432 22211 12223467888887777744
No 112
>PRK06749 replicative DNA helicase; Provisional
Probab=36.11 E-value=98 Score=31.36 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 293 PDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 293 ~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
.+.+.++.+.|..+|+++++||+++
T Consensus 322 ~~ei~~isr~LK~lAkel~vpVi~l 346 (428)
T PRK06749 322 FQEISEISRKLKLLARELNVCVVAL 346 (428)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 4568889999999999999998876
No 113
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=35.97 E-value=2.2e+02 Score=22.49 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=24.0
Q ss_pred cCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCC--CEEEEeCCCCChh
Q 019524 267 FDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNI--PIVMLTSGPITSE 325 (339)
Q Consensus 267 f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~--p~v~vleGGY~~~ 325 (339)
.+.+.||+.|+....+ +.....+ +.+..++.|. .-+.+|+|||+.+
T Consensus 64 ~~~~~iv~~C~~~g~r---------s~~a~~~----l~~~l~~~G~~~~~v~~l~GG~~~w 111 (113)
T cd01443 64 AGVKLAIFYCGSSQGR---------GPRAARW----FADYLRKVGESLPKSYILTGGIKAW 111 (113)
T ss_pred cCCCEEEEECCCCCcc---------cHHHHHH----HHHHHhccCCCCCeEEEECChhhhh
Confidence 4556777777632211 2233333 3333333442 4578899999653
No 114
>PRK08840 replicative DNA helicase; Provisional
Probab=35.71 E-value=97 Score=31.79 Aligned_cols=46 Identities=20% Similarity=0.332 Sum_probs=32.6
Q ss_pred HHhhc-CCCEEEEEcCCCCCCCCCCCCCcc------CHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 263 AGHTF-DPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 263 ~~~~f-~PdlIvvsaG~D~~~~Dplg~~~l------t~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
+..++ +.++||| |.|+-+.. ....+.++++.|..+|+++++||+++
T Consensus 323 ~~~~~~~~~lvvI---------DYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~L 375 (464)
T PRK08840 323 IAREHGGLSMIMV---------DYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVAL 375 (464)
T ss_pred HHHhcCCCCEEEE---------ccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 33444 4788887 45544432 13457889999999999999998875
No 115
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=35.70 E-value=1.3e+02 Score=30.13 Aligned_cols=58 Identities=21% Similarity=0.361 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCh
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~ 324 (339)
..+.+.|..+.++++|++|+|.... ....+|. +..+.+ ++-++.+.|++.+--.||..
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdD----------i~~v~~---~~~~~~~~pvi~v~t~gf~g 133 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGDD----------VESVVE---ELEDEIGIPVVALHCEGFKG 133 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhccC----------HHHHHH---HHHHhhCCCEEEEeCCccCC
Confidence 4566677778889999988776664 4444443 222222 22234689999999999954
No 116
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=35.59 E-value=46 Score=31.98 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCCeEEEEeccCcCCcchhhhh
Q 019524 177 ISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDF 210 (339)
Q Consensus 177 vAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if 210 (339)
+..+++|+.++.+.+||++|--|-=.|.+..+.|
T Consensus 120 ~~~~~~~~~~~~g~k~vaii~~d~~~g~~~~~~~ 153 (348)
T cd06355 120 IIPAVDWLMSNKGGKRFYLVGSDYVYPRTANKIL 153 (348)
T ss_pred HHHHHHHHHhccCCCeEEEECCcchHHHHHHHHH
Confidence 3456788887777899999987777787777665
No 117
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=35.45 E-value=46 Score=31.36 Aligned_cols=48 Identities=19% Similarity=0.403 Sum_probs=25.1
Q ss_pred HHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCC
Q 019524 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320 (339)
Q Consensus 257 ~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleG 320 (339)
++++...+++|+||++|+.. |-+. .-|=.. ..++..+.++|++++.-|
T Consensus 48 e~~~~~~~~~~~pdf~I~is--------PN~~----~PGP~~----ARE~l~~~~iP~IvI~D~ 95 (276)
T PF01993_consen 48 EEVVTKMLKEWDPDFVIVIS--------PNAA----APGPTK----AREMLSAKGIPCIVISDA 95 (276)
T ss_dssp HHHHHHHHHHH--SEEEEE---------S-TT----SHHHHH----HHHHHHHSSS-EEEEEEG
T ss_pred HHHHHHHHHhhCCCEEEEEC--------CCCC----CCCcHH----HHHHHHhCCCCEEEEcCC
Confidence 45556666899999999853 2322 122222 223345568999888653
No 118
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=35.39 E-value=2e+02 Score=28.25 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=25.0
Q ss_pred CCCccCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 287 GMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 287 g~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
+++ +++++|.+..+ ++++|.++++|+|.+.
T Consensus 132 ~G~-~~p~g~rKa~R-lm~lA~~f~lPIItlv 161 (322)
T CHL00198 132 FGM-PSPGGYRKALR-LMKHANKFGLPILTFI 161 (322)
T ss_pred CCC-CCHHHHHHHHH-HHHHHHHcCCCEEEEE
Confidence 443 78999999886 6799999999998775
No 119
>PRK07773 replicative DNA helicase; Validated
Probab=35.12 E-value=1.2e+02 Score=33.85 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=35.4
Q ss_pred HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcc------CHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l------t~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
+..+.++.++++||| |.|+-|.- ..+...++.+.|..+|+++++|++++
T Consensus 319 ~r~~~~~~~~~lvvI---------DyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~vpvi~l 373 (886)
T PRK07773 319 ARRLRQEANLGLIVV---------DYLQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVVAL 373 (886)
T ss_pred HHHHHHhcCCCEEEE---------cchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcEEEe
Confidence 444556678999988 54544431 13467889999999999999998875
No 120
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=34.90 E-value=43 Score=31.01 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=14.0
Q ss_pred HHcCCCeEEEEeccCcCCcchh
Q 019524 186 VQLNISRVMIIDLDAHQGNGHE 207 (339)
Q Consensus 186 ~~~~~~RV~IiD~DvHHGnGTq 207 (339)
.+.| +||++||.|. +||=++
T Consensus 25 a~~G-~rvlliD~Dp-q~~~~~ 44 (267)
T cd02032 25 AKRG-KKVLQIGCDP-KHDSTF 44 (267)
T ss_pred HHCC-CcEEEEecCC-CCCcce
Confidence 3445 6999999996 455444
No 121
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=34.82 E-value=85 Score=31.61 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCChhHHHH
Q 019524 252 YLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLA 329 (339)
Q Consensus 252 yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~~~~~a 329 (339)
|...|.+.+ |.+++|+=+.+||=.|=.+..++-+ ..+.+.+..+ ...+.++|+|.|||+.....+.
T Consensus 1 ~~~~~~~~~-~~i~~~~~~~~ViK~GG~~~~~~~~----------~~~~~~i~~l-~~~g~~~vlVHGgg~~i~~~~~ 66 (429)
T TIGR01890 1 FVAWFREAA-PYINAHRGKTFVVGLGGELVEGGNL----------GNIVADIALL-HSLGVRLVLVHGARPQIERILA 66 (429)
T ss_pred ChhHHhhhh-HHHHHhCCCEEEEEEChhhccCccH----------HHHHHHHHHH-HHCCCcEEEEcCCCHHHHHHHH
Confidence 356677774 6679999999999988666643211 1233333332 3457899999999986654443
No 122
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=34.68 E-value=39 Score=31.77 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCC
Q 019524 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320 (339)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleG 320 (339)
+++...+++|+||++|+-. |-+..-= +.. -.++.++.++|++++.-|
T Consensus 50 ~~~~~~~~~~~pDf~i~is--------PN~a~PG-P~~-------ARE~l~~~~iP~IvI~D~ 96 (277)
T PRK00994 50 EVVKKMLEEWKPDFVIVIS--------PNPAAPG-PKK-------AREILKAAGIPCIVIGDA 96 (277)
T ss_pred HHHHHHHHhhCCCEEEEEC--------CCCCCCC-chH-------HHHHHHhcCCCEEEEcCC
Confidence 4555667899999998843 2222111 111 123345668999888654
No 123
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=34.35 E-value=43 Score=31.16 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=12.4
Q ss_pred CCCeEEEEeccCcCCc
Q 019524 189 NISRVMIIDLDAHQGN 204 (339)
Q Consensus 189 ~~~RV~IiD~DvHHGn 204 (339)
| +||++||+|.+..+
T Consensus 31 G-~rvLliD~Dpq~~~ 45 (275)
T PRK13233 31 D-KKVFIHGCDPKADS 45 (275)
T ss_pred C-CeEEEeccCcCcCh
Confidence 5 69999999998644
No 124
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=34.35 E-value=1.8e+02 Score=25.35 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCC-CccCHHHHHHHHHHHHHHHhhC-----CCCEEEEe
Q 019524 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGM-LKISPDGIAARDEKTFRFARSR-----NIPIVMLT 318 (339)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~-~~lt~~g~~~~~~~l~~~a~~~-----~~p~v~vl 318 (339)
.+..++++++||+||+. ||=+-. -..+.+.+.+..+.+.++.... +.|+++|.
T Consensus 36 ~~~~~i~~~~pd~vi~l-------GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 94 (171)
T cd07384 36 AFKTALQRLKPDVVLFL-------GDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVP 94 (171)
T ss_pred HHHHHHHhcCCCEEEEe-------ccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEEC
Confidence 34445578999999862 332222 1223345555555555544321 45655554
No 125
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=34.26 E-value=1e+02 Score=30.95 Aligned_cols=57 Identities=25% Similarity=0.400 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcC-CCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCh
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAG-TDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~ 324 (339)
..+.+.|..+.++|+|++|+|... .....+|.+ ..+.+ ++ ++.+.|++.|--.||..
T Consensus 72 ~kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdDi----------~~v~~---~~-~~~~~~vi~v~t~gf~g 129 (427)
T cd01971 72 DRLRELIKSTLSIIDADLFVVLTGCIAEIIGDDV----------GAVVS---EF-QEGGAPIVYLETGGFKG 129 (427)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcCH----------HHHHH---Hh-hhcCCCEEEEECCCcCc
Confidence 445566666778899998766554 355555532 22222 22 44578899888888843
No 126
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=34.23 E-value=1.2e+02 Score=30.51 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhcCC-CEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCh
Q 019524 254 KKLDEALEVAGHTFDP-ELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~P-dlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~ 324 (339)
..|.+.|..+.++|+| ++|+|.... ....+|.+ ..+.+ ++.++.+.|++.|--.||..
T Consensus 84 ~kL~~~I~~~~~~~~p~~~I~V~tTC~~~iIGdDi----------~~v~~---~~~~~~~~pvi~v~t~gf~g 143 (421)
T cd01976 84 KKLAKAIDEAYELFPLNKGISVQSECPVGLIGDDI----------EAVAR---KASKELGIPVVPVRCEGFRG 143 (421)
T ss_pred HHHHHHHHHHHHhCCCccEEEEECCChHHHhccCH----------HHHHH---HHHHhhCCCEEEEeCCCccC
Confidence 3556777778899999 987776543 44444432 22222 22234588999999888843
No 127
>PRK10037 cell division protein; Provisional
Probab=34.01 E-value=41 Score=30.94 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=14.6
Q ss_pred HHHHcCCCeEEEEeccCcCCcch
Q 019524 184 AFVQLNISRVMIIDLDAHQGNGH 206 (339)
Q Consensus 184 l~~~~~~~RV~IiD~DvHHGnGT 206 (339)
++.+.| +||++||+|-. ||-+
T Consensus 25 ~La~~G-~rVLlID~D~q-~~~s 45 (250)
T PRK10037 25 SLQMLG-ENVLVIDACPD-NLLR 45 (250)
T ss_pred HHHhcC-CcEEEEeCChh-hhHH
Confidence 344445 69999999994 5544
No 128
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=33.93 E-value=58 Score=32.49 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEEE
Q 019524 247 TTTNEYLKKLDEALEVAGHTFDPELVIYN 275 (339)
Q Consensus 247 ~~d~~yl~a~~~~l~p~~~~f~PdlIvvs 275 (339)
.+++++++.=+++|...++.||||++||-
T Consensus 85 ~~l~e~~~~Rs~lil~t~~~fkPDi~IVd 113 (400)
T COG4671 85 GDLEETKKLRSQLILSTAETFKPDIFIVD 113 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 44788888888999999999999999983
No 129
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=33.51 E-value=1.4e+02 Score=25.62 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=30.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCH-HHHHHHHHHHHHHHhhCCCCEEE
Q 019524 244 VSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISP-DGIAARDEKTFRFARSRNIPIVM 316 (339)
Q Consensus 244 ~~g~~d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~-~g~~~~~~~l~~~a~~~~~p~v~ 316 (339)
++.....+=+..+.+.+..++++|+||.+++ ++++-.-+..+ -...+.--.+.-.+...++|+..
T Consensus 34 ~~~~~~~~Rl~~I~~~l~~li~~~~P~~vai--------E~~f~~~n~~s~~~l~~arGvi~l~~~~~~i~v~~ 99 (149)
T PF02075_consen 34 SSKDSLPERLKEIYEELEELIEEYNPDEVAI--------EEIFFGKNPKSALKLGQARGVILLAAAQRGIPVFE 99 (149)
T ss_dssp --S--HHHHHHHHHHHHHHHHHHH--SEEEE--------EE-S----HHHHHHHHHHHHHHHHHHHTTT--EEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhCCCEEEe--------ehhhhccCHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3444445555666677888999999999998 55554434322 22233333333444556888764
No 130
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=33.49 E-value=49 Score=30.14 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEEcCC
Q 019524 253 LKKLDEALEVAGHTFDPELVIYNAGT 278 (339)
Q Consensus 253 l~a~~~~l~p~~~~f~PdlIvvsaG~ 278 (339)
..+|++.+...+++++||+|++ |||
T Consensus 64 r~~~d~~l~~~l~~~~~dlvvL-AGy 88 (200)
T COG0299 64 REAFDRALVEALDEYGPDLVVL-AGY 88 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEE-cch
Confidence 4567777778889999999875 564
No 131
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=33.32 E-value=1.5e+02 Score=27.10 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcc-CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 019524 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKI-SPDGIAARDEKTFRFARSRNIPIVMLTS 319 (339)
Q Consensus 256 ~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l-t~~g~~~~~~~l~~~a~~~~~p~v~vle 319 (339)
+.+.+...+++++++.||| |++..+.. ++..+.++...+..++++.++.++++.+
T Consensus 114 ~~~~i~~~i~~~~~~~vVI---------DSls~l~~~~~~~~r~~l~~l~~~lk~~~~t~llt~~ 169 (237)
T TIGR03877 114 LIDVLRQAIRDINAKRVVI---------DSVTTLYITKPAMARSIVMQLKRVLSGLGCTSIFVSQ 169 (237)
T ss_pred HHHHHHHHHHHhCCCEEEE---------cChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 3344445557889998887 55555433 2333445556677788888998888754
No 132
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.88 E-value=84 Score=28.33 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCC
Q 019524 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLG 287 (339)
Q Consensus 249 d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg 287 (339)
.++-++.+..++. ++++|.|+-+||.+|+ |+|+---+.
T Consensus 94 ~~eA~e~m~~vvr-AVkd~d~~k~VVAaGYaDa~Rvgsv~ 132 (235)
T COG1891 94 EEEALEVMKNVVR-AVKDFDPSKKVVAAGYADAHRVGSVS 132 (235)
T ss_pred HHHHHHHHHHHHH-HHhccCCCceEEeccccchhhccCcC
Confidence 4455566666655 5599999999999998 888765443
No 133
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=32.79 E-value=97 Score=31.08 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcC-CCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCh
Q 019524 255 KLDEALEVAGHTFDPELVIYNAG-TDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324 (339)
Q Consensus 255 a~~~~l~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~ 324 (339)
.+.+.|..+.++|+|++|+|... .....+|.+ ..+.+.+ -++.+.|++.+--.||..
T Consensus 72 kL~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi----------~~v~~~~---~~~~~~~vi~v~t~gf~g 129 (430)
T cd01981 72 KVVENITRKDKEEKPDLIVLTPTCTSSILQEDL----------QNFVRAA---GLSSKSPVLPLDVNHYRV 129 (430)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHhhCH----------HHHHHHh---hhccCCCeEEecCCCccc
Confidence 45555666778899998877666 455555533 2222222 233588999999999953
No 134
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=32.78 E-value=1.2e+02 Score=30.94 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhh-CCCCEEEEeCCCCCh
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS-RNIPIVMLTSGPITS 324 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~-~~~p~v~vleGGY~~ 324 (339)
..+.+.|..+.++|+|++|+|..+. ....+|.+ ..+.+.+.+-..+ .+.|++.+--.||..
T Consensus 78 ~~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi----------~~v~~~~~~~~p~~~~~pvi~v~tpgF~g 140 (455)
T PRK14476 78 ENVEEAILNICKKAKPKIIGLCTTGLTETRGDDV----------AGALKEIRARHPELADTPIVYVSTPDFKG 140 (455)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCcchHhhhhccH----------HHHHHHHHhhccccCCCeEEEecCCCCCC
Confidence 4455566667788999988766554 66666642 2222222111111 267999999999853
No 135
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=32.69 E-value=1.6e+02 Score=25.79 Aligned_cols=47 Identities=23% Similarity=0.216 Sum_probs=29.3
Q ss_pred HHHhhcC-CCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCC
Q 019524 262 VAGHTFD-PELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRN 311 (339)
Q Consensus 262 p~~~~f~-PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~ 311 (339)
..++.-. ||+|++..|. |+. |.....-..+.+....+.+.+..++.+
T Consensus 70 ~~l~~~~~~d~v~i~lG~ND~~---~~~~~~p~~~~~~~~~~~li~~~~~~~ 118 (216)
T COG2755 70 ALLKQHLPPDLVIIMLGGNDIG---PLRGFSPNAAEFTKNLRQLIQALRKAN 118 (216)
T ss_pred HHHhccCCCCEEEEEeeccccc---hhcccCccHHHHHHHHHHHHHHHHHhc
Confidence 3334444 9999999998 665 232222234667666666777666654
No 136
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=32.67 E-value=1.3e+02 Score=29.80 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=34.0
Q ss_pred HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCC
Q 019524 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGP 321 (339)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGG 321 (339)
+..+++.-+||+||+. +|-+-+ -+..++..---+..+=+.+.++|.++++|-=
T Consensus 92 ~~rvL~sE~PDlVVfT-------GD~i~g--~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNH 144 (379)
T KOG1432|consen 92 VSRVLASEKPDLVVFT-------GDNIFG--HSTQDAATSLMKAVAPAIDRKIPWAAVLGNH 144 (379)
T ss_pred HHHHHhccCCCEEEEe-------CCcccc--cccHhHHHHHHHHhhhHhhcCCCeEEEeccc
Confidence 3445577899999973 454433 4566666543334444456799999998643
No 137
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=32.46 E-value=51 Score=30.74 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=15.6
Q ss_pred HHHHHHHcCCCeEEEEeccCcCCc
Q 019524 181 IHYAFVQLNISRVMIIDLDAHQGN 204 (339)
Q Consensus 181 a~~l~~~~~~~RV~IiD~DvHHGn 204 (339)
..+++.+.| +||++||+|....+
T Consensus 21 LA~~La~~G-~rVLlID~Dpq~~~ 43 (274)
T PRK13235 21 TVAGLAEMG-KKVMVVGCDPKADS 43 (274)
T ss_pred HHHHHHHCC-CcEEEEecCCcccc
Confidence 334444455 69999999986544
No 138
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=32.21 E-value=4.5e+02 Score=26.02 Aligned_cols=102 Identities=19% Similarity=0.065 Sum_probs=57.7
Q ss_pred HHHHcCCCeEEEEeccCcCCcchhhhhcC---CCcEEEEEeeCCCCCCCCcccCCccccccccCCCCChHHHHHHHHHHH
Q 019524 184 AFVQLNISRVMIIDLDAHQGNGHEKDFSS---DSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEAL 260 (339)
Q Consensus 184 l~~~~~~~RV~IiD~DvHHGnGTq~if~~---d~~Vl~iSiH~~~~yP~tg~~~~~~~~NvPL~~g~~d~~yl~a~~~~l 260 (339)
+.++.+.++|++|--|=-.|.+..+.|.+ +..+.... . ..++++..+..+.......+
T Consensus 166 li~~~~w~~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa~-~------------------e~~~~~~~~~~~~~~~~~~~ 226 (403)
T cd06361 166 LIKKSGWNWVGIIITDDDYGRSALETFIIQAEANGVCIAF-K------------------EILPASLSDNTKLNRIIRTT 226 (403)
T ss_pred HHHHcCCcEEEEEEecCchHHHHHHHHHHHHHHCCeEEEE-E------------------EEecCccCcchhHHHHHHHH
Confidence 34556889999998888888888777743 22333221 1 11223333333332232344
Q ss_pred HHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCC
Q 019524 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPIT 323 (339)
Q Consensus 261 ~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~ 323 (339)
...++.-+||+||+.+-. .-...+++-|++.|...++++..|..
T Consensus 227 ~~~ik~~~a~vVvv~~~~-------------------~~~~~l~~~a~~~g~~~~wigs~~w~ 270 (403)
T cd06361 227 EKIIEENKVNVIVVFARQ-------------------FHVFLLFNKAIERNINKVWIASDNWS 270 (403)
T ss_pred HHHHhcCCCeEEEEEeCh-------------------HHHHHHHHHHHHhCCCeEEEEECccc
Confidence 445577899999984431 12234555666666667777666653
No 139
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=32.06 E-value=1.4e+02 Score=28.24 Aligned_cols=75 Identities=12% Similarity=0.048 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEc-------CCCC----CC-----CCCCCCC----ccCHHHHHHHHHHHHHHHh
Q 019524 249 TNEYLKKLDEALEVAGHTFDPELVIYNA-------GTDI----LE-----GDPLGML----KISPDGIAARDEKTFRFAR 308 (339)
Q Consensus 249 d~~yl~a~~~~l~p~~~~f~PdlIvvsa-------G~D~----~~-----~Dplg~~----~lt~~g~~~~~~~l~~~a~ 308 (339)
.+.+..+++++=..+ ++++||.|||-. ..|. .. ..|++.+ +.+-++=.++++.|.+.+.
T Consensus 28 ~~~~~~a~~~~~~~v-~~~~pD~ivvi~~dH~~~f~~~~~P~f~i~~~~~~g~~~~~~~~~~~~~~g~~eLA~~i~~~l~ 106 (277)
T cd07368 28 REICWHAYAICAERL-AALQVTSVVVIGDDHYTLFGTYCLPMYLIGTGDVDGPYDPLPGLPRAVIENNEPLAHHIMQHGL 106 (277)
T ss_pred HHHHHHHHHHHHHHH-HHcCCCEEEEEcCchHhhhhhccCCceEEecccccCCccccCCCCcccCcCCHHHHHHHHHHHH
Confidence 456777887765544 899999988864 2222 11 1233321 2233444567778888888
Q ss_pred hCCCCEEEEeCCCCCh
Q 019524 309 SRNIPIVMLTSGPITS 324 (339)
Q Consensus 309 ~~~~p~v~vleGGY~~ 324 (339)
+.++++...-+-|.+.
T Consensus 107 ~~g~~~~~~~~~~lDH 122 (277)
T cd07368 107 EYGIDWAVARSFTVDH 122 (277)
T ss_pred HcCCCEeeecCcCCCc
Confidence 7888888777777755
No 140
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=32.00 E-value=3.2e+02 Score=23.87 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcc-CHHHHHHHHHHHHHHHhhCCCCEEE
Q 019524 253 LKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKI-SPDGIAARDEKTFRFARSRNIPIVM 316 (339)
Q Consensus 253 l~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l-t~~g~~~~~~~l~~~a~~~~~p~v~ 316 (339)
+..+.+-|..++++|+||.+++ ++++-.-+. |.-...+.--.+...+...++|+.-
T Consensus 46 l~~I~~~l~~~i~~~~Pd~vai--------E~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~e 102 (164)
T PRK00039 46 LKQIYDGLSELIDEYQPDEVAI--------EEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAE 102 (164)
T ss_pred HHHHHHHHHHHHHHhCCCEEEE--------ehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 4444456777889999999987 444432222 1222223223444555667888753
No 141
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=31.90 E-value=2.9e+02 Score=23.60 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCC-CCCCccCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 253 LKKLDEALEVAGHTFDPELVIYNAGTDILEGDP-LGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 253 l~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dp-lg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
+..+.+.|..++++|+||.+++ +++ ++...=|.-...+.-..++..+...++|+..+
T Consensus 44 l~~I~~~l~~~i~~~~Pd~vai--------E~~~~~~n~~s~~~l~~~~Gvi~~~~~~~~i~v~e~ 101 (154)
T cd00529 44 LKTIYDGLNEVIDQFQPDVVAI--------ERVFFAKNPDSALKLGQARGALILALANRNLPVFEY 101 (154)
T ss_pred HHHHHHHHHHHHHHhCCCEEEE--------EEhhcccChHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4455566778889999999987 332 23321122223333445566666677776543
No 142
>PRK04328 hypothetical protein; Provisional
Probab=31.87 E-value=1.5e+02 Score=27.46 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccC-HHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 019524 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKIS-PDGIAARDEKTFRFARSRNIPIVMLTS 319 (339)
Q Consensus 256 ~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt-~~g~~~~~~~l~~~a~~~~~p~v~vle 319 (339)
+.+.+...+++++|+.||| |++..+.+. ++.+.++...+.+++++.++.++++.+
T Consensus 116 ~~~~i~~~i~~~~~~~vVI---------DSlt~l~~~~~~~~r~~~~~l~~~lk~~g~t~llt~e 171 (249)
T PRK04328 116 LIDVLRQAIKDIGAKRVVI---------DSVSTLYLTKPAMARSIVMQLKRVLSGLGCTAIFVSQ 171 (249)
T ss_pred HHHHHHHHHHhhCCCEEEE---------eChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 3344555668889998887 556554332 333445555677777888988888754
No 143
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=31.80 E-value=1.4e+02 Score=29.59 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=38.9
Q ss_pred CChHHHHHHHHHH---HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHh-hCCCCEEEEe
Q 019524 247 TTTNEYLKKLDEA---LEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFAR-SRNIPIVMLT 318 (339)
Q Consensus 247 ~~d~~yl~a~~~~---l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~-~~~~p~v~vl 318 (339)
|||.-|.+-.+++ +...++.++||++|--=.|++ ..|..+...+.+... +.++|++..+
T Consensus 56 CGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFna-------------grYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 56 CGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNA-------------GRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred ECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCC-------------chHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 5666666544444 335669999999986555543 347777777776544 4699988654
No 144
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=31.30 E-value=2.4e+02 Score=27.63 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=24.9
Q ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEe-CCCC
Q 019524 291 ISPDGIAARDEKTFRFARSRNIPIVMLT-SGPI 322 (339)
Q Consensus 291 lt~~g~~~~~~~l~~~a~~~~~p~v~vl-eGGY 322 (339)
+++++|.+..+ ++++|.++++|+|.+. ..|+
T Consensus 132 ~~peg~rKa~R-~m~lA~~f~lPIVtlvDTpGa 163 (319)
T PRK05724 132 PRPEGYRKALR-LMKMAEKFGLPIITFIDTPGA 163 (319)
T ss_pred CCHHHHHHHHH-HHHHHHHcCCCEEEEEeCCCC
Confidence 56899999876 6699999999988765 4454
No 145
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=31.13 E-value=2.1e+02 Score=22.64 Aligned_cols=13 Identities=23% Similarity=0.102 Sum_probs=10.7
Q ss_pred hhcCCCEEEEEcC
Q 019524 265 HTFDPELVIYNAG 277 (339)
Q Consensus 265 ~~f~PdlIvvsaG 277 (339)
++.+||+|.+|+-
T Consensus 47 ~~~~pdiV~iS~~ 59 (125)
T cd02065 47 KEEDADVVGLSAL 59 (125)
T ss_pred HHcCCCEEEEecc
Confidence 4589999999874
No 146
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=30.84 E-value=1e+02 Score=27.70 Aligned_cols=60 Identities=22% Similarity=0.381 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHhhc--CCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCC
Q 019524 249 TNEYLKKLDEALEVAGHTF--DPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPIT 323 (339)
Q Consensus 249 d~~yl~a~~~~l~p~~~~f--~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~ 323 (339)
+.+....+++++.-+ ++. +||+||+ +| |.... -+.+.|.. +.++.++.++|++++. |--+
T Consensus 20 ~~~~~~~l~~~~~~i-~~~~~~~d~vi~-~G-Dl~~~-------~~~~~~~~----~~~~l~~~~~p~~~v~-GNHD 81 (240)
T cd07402 20 GVDTAASLEAVLAHI-NALHPRPDLVLV-TG-DLTDD-------GSPESYER----LRELLAALPIPVYLLP-GNHD 81 (240)
T ss_pred CcCHHHHHHHHHHHH-HhcCCCCCEEEE-Cc-cCCCC-------CCHHHHHH----HHHHHhhcCCCEEEeC-CCCC
Confidence 445567777777655 454 8998876 33 22211 12455554 3344455688876654 4443
No 147
>PRK07004 replicative DNA helicase; Provisional
Probab=30.79 E-value=86 Score=32.09 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=31.6
Q ss_pred Hhhc-CCCEEEEEcCCCCCCCCCCCCCcc------CHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 264 GHTF-DPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 264 ~~~f-~PdlIvvsaG~D~~~~Dplg~~~l------t~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
.+++ ++++||| |.|+-+.- ..+.+.++.+.|..+|+++++||+++
T Consensus 319 ~~~~~~~~lviI---------DYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~l 370 (460)
T PRK07004 319 ARQCGKLGLIII---------DYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIAL 370 (460)
T ss_pred HHhCCCCCEEEE---------ChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 3444 5898887 44433321 23457899999999999999998865
No 148
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=30.59 E-value=55 Score=28.20 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCEEEE
Q 019524 251 EYLKKLDEALEVAGHTFDPELVIY 274 (339)
Q Consensus 251 ~yl~a~~~~l~p~~~~f~PdlIvv 274 (339)
-+...+.+.+.+.+++++||+||-
T Consensus 72 ~~~~~~~~~l~~~l~~~~PD~IIs 95 (169)
T PF06925_consen 72 ALSRLFARRLIRLLREFQPDLIIS 95 (169)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEE
Confidence 345556667788889999999985
No 149
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=30.41 E-value=95 Score=30.96 Aligned_cols=57 Identities=23% Similarity=0.251 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCh
Q 019524 255 KLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324 (339)
Q Consensus 255 a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~ 324 (339)
.+.+.|..+.++|+|++|+|.... ....+|. +..+.+.+ -++.+.|++.+--.||..
T Consensus 73 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdD----------i~~v~~~~---~~~~~~~vi~v~t~gf~g 130 (410)
T cd01968 73 KLYKAILEIIERYHPKAVFVYSTCVVALIGDD----------IDAVCKTA---SEKFGIPVIPVHSPGFVG 130 (410)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccC----------HHHHHHHH---HHhhCCCEEEEECCCccc
Confidence 455566667788999987665443 4444443 22222222 223478888888888844
No 150
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=30.25 E-value=1.4e+02 Score=28.05 Aligned_cols=72 Identities=10% Similarity=-0.004 Sum_probs=0.0
Q ss_pred ccCCCCChH----HHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCC----------------------CCCCCccCHHH
Q 019524 242 EVVSGTTTN----EYLKKLDEALEVAGHTFDPELVIYNAGTDILEGD----------------------PLGMLKISPDG 295 (339)
Q Consensus 242 PL~~g~~d~----~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~D----------------------plg~~~lt~~g 295 (339)
|++.-..+. .+.++|+++-..+ ++.+||.||| +.+|... ++|++.....+
T Consensus 13 P~~~~~~~~~~~~~~~~a~~~lg~~l-~~~~Pd~Ivv---iS~Hw~~~~~~~~v~~~~~~g~~~~~~~~df~g~p~~~~g 88 (271)
T cd07373 13 PLPQLRPDVPSWGQFAAATRQAGKAL-AASRPDVVLV---YSTQWFAVLDQQWLTRPRSEGVHVDENWHEFGELPYDIRS 88 (271)
T ss_pred CccccCCCcccHHHHHHHHHHHHHHH-HHhCCCEEEE---ECCCCcccccceeEeeccccccccccChhHhcCcccccCC
Q ss_pred HHHHHHHHHHHHhhCCCCEEEE
Q 019524 296 IAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 296 ~~~~~~~l~~~a~~~~~p~v~v 317 (339)
=.++.+.|.+.+++.++++..+
T Consensus 89 ~~eLA~~i~~~~~~~gi~~~~~ 110 (271)
T cd07373 89 DTALAEACVTACPEHGVHARGV 110 (271)
T ss_pred CHHHHHHHHHHHHHCCCcEEEe
No 151
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=30.02 E-value=2.5e+02 Score=25.75 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCC--EEEE--------EcCCCCCCCCCCCCCccCHHH---HHHHHHHHHHHHhhCCCCEE
Q 019524 249 TNEYLKKLDEALEVAGHTFDPE--LVIY--------NAGTDILEGDPLGMLKISPDG---IAARDEKTFRFARSRNIPIV 315 (339)
Q Consensus 249 d~~yl~a~~~~l~p~~~~f~Pd--lIvv--------saG~D~~~~Dplg~~~lt~~g---~~~~~~~l~~~a~~~~~p~v 315 (339)
+.+.+..|.+++..+.. +|+ .+|| |+|.|...- ....-+.+. +......++.....+..|+|
T Consensus 24 ~~~~~~eL~~al~~~~~--d~~~~~vVV~~g~g~~FsaG~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 98 (239)
T PLN02267 24 NPTLIDSIRSALRQVKS--QATPGSVLITTAEGKFFSNGFDLAWA---QAAGSAPSRLHLMVAKLRPLVADLISLPMPTI 98 (239)
T ss_pred CHHHHHHHHHHHHHHHh--CCCCceEEEEcCCCCceeCCcCHHHH---hccccCHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 55667778777776633 444 2443 556665421 110011111 21111223333344678999
Q ss_pred EEeCC
Q 019524 316 MLTSG 320 (339)
Q Consensus 316 ~vleG 320 (339)
+...|
T Consensus 99 AaV~G 103 (239)
T PLN02267 99 AAVTG 103 (239)
T ss_pred EEECC
Confidence 88755
No 152
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=29.89 E-value=1.3e+02 Score=28.37 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHH
Q 019524 253 LKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAAR 299 (339)
Q Consensus 253 l~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~ 299 (339)
..++++.|..+.+++++|+||+.+ +.--|++.+|.+-|.++
T Consensus 12 r~~v~~~Lp~L~~~~~~DfVIaNg------ENaa~G~Git~~~~~~L 52 (253)
T PF13277_consen 12 RRAVKEHLPELKEEYGIDFVIANG------ENAAGGFGITPKIAEEL 52 (253)
T ss_dssp HHHHHHHHHHHGG--G-SEEEEE-------TTTTTTSS--HHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCEEEECC------cccCCCCCCCHHHHHHH
Confidence 467888899999999999999864 44567889999988864
No 153
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=29.84 E-value=1.3e+02 Score=24.01 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=11.9
Q ss_pred HHhhcCCCEEEEEcC
Q 019524 263 AGHTFDPELVIYNAG 277 (339)
Q Consensus 263 ~~~~f~PdlIvvsaG 277 (339)
.+++.+||+|.+|+-
T Consensus 45 ~~~~~~pdvV~iS~~ 59 (119)
T cd02067 45 AAKEEDADAIGLSGL 59 (119)
T ss_pred HHHHcCCCEEEEecc
Confidence 347889999999764
No 154
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=29.45 E-value=59 Score=32.20 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=14.4
Q ss_pred HcCCCeEEEEeccCcCCcchh
Q 019524 187 QLNISRVMIIDLDAHQGNGHE 207 (339)
Q Consensus 187 ~~~~~RV~IiD~DvHHGnGTq 207 (339)
+.| +||++||+|. +||=|+
T Consensus 131 ~~G-~rVLlID~Dp-Q~~ls~ 149 (387)
T TIGR03453 131 LRG-YRVLAIDLDP-QASLSA 149 (387)
T ss_pred hcC-CCEEEEecCC-CCCHHH
Confidence 345 6999999997 777554
No 155
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=29.43 E-value=62 Score=28.57 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=12.0
Q ss_pred cCCCeEEEEeccCcCC
Q 019524 188 LNISRVMIIDLDAHQG 203 (339)
Q Consensus 188 ~~~~RV~IiD~DvHHG 203 (339)
.| +||++||+|....
T Consensus 45 ~G-~rVllID~D~~~~ 59 (204)
T TIGR01007 45 AG-YKTLLIDGDMRNS 59 (204)
T ss_pred CC-CeEEEEeCCCCCh
Confidence 34 6999999998754
No 156
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=29.42 E-value=1.2e+02 Score=30.15 Aligned_cols=46 Identities=30% Similarity=0.486 Sum_probs=31.9
Q ss_pred HhhcCCCEEEEEcCCCCCCCCCCCCCc--------cCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 264 GHTFDPELVIYNAGTDILEGDPLGMLK--------ISPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 264 ~~~f~PdlIvvsaG~D~~~~Dplg~~~--------lt~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
+++++|++||| |++..+. =+.....+....|.++|++.+++++++.
T Consensus 154 i~~~~~~lVVI---------DSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvg 207 (372)
T cd01121 154 IEELKPDLVII---------DSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVG 207 (372)
T ss_pred HHhcCCcEEEE---------cchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 36789999998 3332221 1234566777788999999999988874
No 157
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=29.35 E-value=85 Score=32.15 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhcCC-CEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCC
Q 019524 254 KKLDEALEVAGHTFDP-ELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPIT 323 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~P-dlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~ 323 (339)
..|.+.|..+.++|+| ++|+|.... ....+|.+ ..+ +.++.++.+.|++.+--.||.
T Consensus 117 ~kL~~aI~e~~~~~~P~~~I~V~tTC~~~lIGDDi----------~av---~~~~~~~~~~pVi~v~t~gf~ 175 (466)
T TIGR01282 117 KKLKKAIDEIEELFPLNKGISIQSECPVGLIGDDI----------EAV---AKKASKELGKPVVPVRCEGFR 175 (466)
T ss_pred HHHHHHHHHHHHhCCcccEEEEeCCChHHHhccCH----------HHH---HHHHhhhcCCcEEEEeCCCcC
Confidence 3556777788899999 888776554 45555533 222 222223458999999999995
No 158
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=29.28 E-value=18 Score=31.67 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhh--cCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCC
Q 019524 254 KKLDEALEVAGHT--FDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320 (339)
Q Consensus 254 ~a~~~~l~p~~~~--f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleG 320 (339)
+.|+++..++++. -++|+||+ |-+|.|.+...+|.+....+++ .+.|+++++-=
T Consensus 79 e~fe~~~~~~L~~~~~~~~livi---------DEIG~mEl~~~~F~~~v~~~l~----s~~~vi~vv~~ 134 (168)
T PF03266_consen 79 ESFEEIGLPALRNALSSSDLIVI---------DEIGKMELKSPGFREAVEKLLD----SNKPVIGVVHK 134 (168)
T ss_dssp HHHHCCCCCCCHHHHHCCHEEEE------------STTCCC-CHHHHHHHHHHC----TTSEEEEE--S
T ss_pred HHHHHHHHHHHHhhcCCCCEEEE---------eccchhhhcCHHHHHHHHHHHc----CCCcEEEEEec
Confidence 3455544444444 58899997 8999999999999987665543 35677777643
No 159
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=29.22 E-value=5.7e+02 Score=25.24 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=12.3
Q ss_pred HHHHHhhcCCCEEEE
Q 019524 260 LEVAGHTFDPELVIY 274 (339)
Q Consensus 260 l~p~~~~f~PdlIvv 274 (339)
...++++++||+|+-
T Consensus 83 a~~il~~~kPd~vig 97 (357)
T COG0707 83 ARKILKKLKPDVVIG 97 (357)
T ss_pred HHHHHHHcCCCEEEe
Confidence 456889999999985
No 160
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=29.17 E-value=2.3e+02 Score=23.05 Aligned_cols=15 Identities=13% Similarity=0.011 Sum_probs=11.6
Q ss_pred HHhhcCCCEEEEEcC
Q 019524 263 AGHTFDPELVIYNAG 277 (339)
Q Consensus 263 ~~~~f~PdlIvvsaG 277 (339)
.+++.+||+|++|+-
T Consensus 45 ~a~~~~~d~V~iS~~ 59 (122)
T cd02071 45 AAIQEDVDVIGLSSL 59 (122)
T ss_pred HHHHcCCCEEEEccc
Confidence 446789999999754
No 161
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=29.06 E-value=1.3e+02 Score=30.80 Aligned_cols=57 Identities=25% Similarity=0.264 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCh
Q 019524 255 KLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324 (339)
Q Consensus 255 a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~ 324 (339)
.|.+.|..+.++|+|++|+|.... ....+|. +..+.+. +-++.+.|++.|--.||..
T Consensus 106 kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdD----------i~~v~~~---~~~~~~~pvi~v~t~Gf~g 163 (475)
T PRK14478 106 KLFKAIDEIIEKYAPPAVFVYQTCVVALIGDD----------IDAVCKR---AAEKFGIPVIPVNSPGFVG 163 (475)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCChHHHhccC----------HHHHHHH---HHHhhCCCEEEEECCCccc
Confidence 444555566678999987775543 4444443 2222222 2233588999998777743
No 162
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=29.01 E-value=65 Score=29.93 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.0
Q ss_pred cCCCeEEEEeccCcCCc
Q 019524 188 LNISRVMIIDLDAHQGN 204 (339)
Q Consensus 188 ~~~~RV~IiD~DvHHGn 204 (339)
.| +||++||+|.+..+
T Consensus 131 ~g-~~VllID~D~~~~~ 146 (274)
T TIGR03029 131 LG-EKTLLIDANLRDPV 146 (274)
T ss_pred cC-CeEEEEeCCCCCcc
Confidence 35 79999999998754
No 163
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=28.93 E-value=2.1e+02 Score=27.79 Aligned_cols=23 Identities=9% Similarity=-0.048 Sum_probs=15.1
Q ss_pred HHHHHhhCCCCEEEEeCCCCChhH
Q 019524 303 TFRFARSRNIPIVMLTSGPITSEK 326 (339)
Q Consensus 303 l~~~a~~~~~p~v~vleGGY~~~~ 326 (339)
+..+.+..|.. +.+++|||..+.
T Consensus 91 aa~~L~~~G~~-v~~L~GG~~aw~ 113 (311)
T TIGR03167 91 LAWLLAQIGFR-VPRLEGGYKAYR 113 (311)
T ss_pred HHHHHHHcCCC-EEEecChHHHHH
Confidence 34444556665 678999996653
No 164
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=28.85 E-value=60 Score=27.75 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.5
Q ss_pred HcCCCeEEEEeccCcC
Q 019524 187 QLNISRVMIIDLDAHQ 202 (339)
Q Consensus 187 ~~~~~RV~IiD~DvHH 202 (339)
+.| +||++||.|.-.
T Consensus 26 ~~g-~~vllvD~D~q~ 40 (169)
T cd02037 26 KLG-YKVGLLDADIYG 40 (169)
T ss_pred HcC-CcEEEEeCCCCC
Confidence 345 699999999843
No 165
>PRK06904 replicative DNA helicase; Validated
Probab=28.70 E-value=1.8e+02 Score=29.89 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCCCCCCCCCCCCcc------CHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 268 DPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 268 ~PdlIvvsaG~D~~~~Dplg~~~l------t~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
+.++||| |.|+-+.- ....+.++++.|..+|+++++||+++
T Consensus 334 ~~~lvvI---------DYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~l 380 (472)
T PRK06904 334 GLSLIMV---------DYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKVPVVAL 380 (472)
T ss_pred CCCEEEE---------ecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 5788887 33433321 23457889999999999999998875
No 166
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.43 E-value=45 Score=33.50 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.2
Q ss_pred cCCcchhhhhcCC------------------CcEEEEEeeC
Q 019524 201 HQGNGHEKDFSSD------------------SRVYILDMFN 223 (339)
Q Consensus 201 HHGnGTq~if~~d------------------~~Vl~iSiH~ 223 (339)
|||||++.+..+. .+||+++||.
T Consensus 167 h~~DGasQ~LssCqrDFRNkPyPvRarItY~~nvLtv~inn 207 (497)
T KOG3838|consen 167 HPGDGASQGLSSCQRDFRNKPYPVRARITYYGNVLTVMINN 207 (497)
T ss_pred CCCccHHHHHHHhhHHhccCCCCceEEEEEeccEEEEEEcC
Confidence 8999999987432 6899999996
No 167
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=28.40 E-value=48 Score=32.96 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEE
Q 019524 253 LKKLDEALEVAGHTFDPELVIYN 275 (339)
Q Consensus 253 l~a~~~~l~p~~~~f~PdlIvvs 275 (339)
+.+++... .+++.|+||+||||
T Consensus 224 m~~~E~f~-~Al~~fqPdLvVvs 245 (478)
T KOG4184|consen 224 MRAVEQFT-DALKMFQPDLVVVS 245 (478)
T ss_pred HHHHHHHH-HHHHHhCCCEEEEe
Confidence 45555443 45699999999985
No 168
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=28.38 E-value=1.8e+02 Score=28.55 Aligned_cols=74 Identities=9% Similarity=0.013 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEE-----cCC--C-----------CCCCCC---CCCCcc----CHHHHHHHHHHHH
Q 019524 250 NEYLKKLDEALEVAGHTFDPELVIYN-----AGT--D-----------ILEGDP---LGMLKI----SPDGIAARDEKTF 304 (339)
Q Consensus 250 ~~yl~a~~~~l~p~~~~f~PdlIvvs-----aG~--D-----------~~~~Dp---lg~~~l----t~~g~~~~~~~l~ 304 (339)
+....+++++-.. +++++||.|||- .|| | .+.+|. ++.+.+ +..+=..+++.|.
T Consensus 29 ~~~~~a~~~l~~~-v~~~~PD~iVV~~sdH~~~~f~d~~P~f~I~~~~~~~G~~~~~~~~~~~~~~~~~~gd~eLA~~I~ 107 (329)
T cd07369 29 ARTEEATLKLGRT-LTAARPDVIIAFLDDHFENHFRTNMPTIAIGVAESHSGPADQLMEALRVPKKHYFPGNPEVAEQLL 107 (329)
T ss_pred HHHHHHHHHHHHH-HHHhCCCEEEEEcCCchhhhccccCccEEEeecceeeccchhccccCCCCcccCCCCCHHHHHHHH
Confidence 3444555554443 488999999984 222 3 122331 223443 3334456777888
Q ss_pred HHHhhCCCCEEEEeCCCCCh
Q 019524 305 RFARSRNIPIVMLTSGPITS 324 (339)
Q Consensus 305 ~~a~~~~~p~v~vleGGY~~ 324 (339)
+.+.+.++++....+-+|+.
T Consensus 108 ~~l~~~G~dva~~~~~~~DH 127 (329)
T cd07369 108 RALVHDSFDCARMGEIEYGN 127 (329)
T ss_pred HHHHHCCCCeeecCCcCCCc
Confidence 88888899998888877754
No 169
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=27.85 E-value=2.8e+02 Score=25.48 Aligned_cols=71 Identities=24% Similarity=0.244 Sum_probs=34.8
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 019524 247 TTTNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (339)
Q Consensus 247 ~~d~~yl~a~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vle 319 (339)
.=+.+.+..+.+++..+.++-....||+ ++|.|...- ....-..+.+......++.....+..|+|+...
T Consensus 28 al~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~---~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~ 104 (259)
T PRK06688 28 ALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDF---PKAPPKPPDELAPVNRFLRAIAALPKPVVAAVN 104 (259)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHH---hccCcchHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 3356677778777776644334455665 455554321 000000012222222333333456789888765
Q ss_pred C
Q 019524 320 G 320 (339)
Q Consensus 320 G 320 (339)
|
T Consensus 105 G 105 (259)
T PRK06688 105 G 105 (259)
T ss_pred C
Confidence 4
No 170
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=27.76 E-value=3.2e+02 Score=25.73 Aligned_cols=82 Identities=7% Similarity=0.097 Sum_probs=0.0
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHhhc---CCCEEEEEcC-----CCCCCCCC--------------CCCCccCHHHHHH
Q 019524 241 VEVVSGTTTNEYLKKLDEALEVAGHTF---DPELVIYNAG-----TDILEGDP--------------LGMLKISPDGIAA 298 (339)
Q Consensus 241 vPL~~g~~d~~yl~a~~~~l~p~~~~f---~PdlIvvsaG-----~D~~~~Dp--------------lg~~~lt~~g~~~ 298 (339)
+++|. .+.+++.+.+.+.+..+-++. +||.|||-.- |+....++ .|.-.....+=.+
T Consensus 13 ~~~~~-~~~~~~~~~~~~al~~~~~~l~~~~Pd~ivvis~dH~~~~~~~~~p~~~i~~~~~~~~~~~~g~p~~~~~gd~~ 91 (268)
T cd07367 13 ILMSP-KGVEDQAARVVQGMAEIGRRVRESRPDVLVVISSDHLFNINLSLQPPFVVGTADSYTPFGDMDIPRELFPGHRE 91 (268)
T ss_pred cCcCC-CCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCceEEeeccccccCCcCCCCcccCCCCHH
Q ss_pred HHHHHHHHHhhCCCCEEEEeCCCCC
Q 019524 299 RDEKTFRFARSRNIPIVMLTSGPIT 323 (339)
Q Consensus 299 ~~~~l~~~a~~~~~p~v~vleGGY~ 323 (339)
+.+.|.+.+.+.++++...-+-+.+
T Consensus 92 LA~~i~~~l~~~g~~~~~~~~~~lD 116 (268)
T cd07367 92 FARAFVRQAAEDGFDLAQAEELRPD 116 (268)
T ss_pred HHHHHHHHHHHcCCCeeeecCccCC
No 171
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=27.68 E-value=2.7e+02 Score=26.37 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCChhHH
Q 019524 251 EYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKV 327 (339)
Q Consensus 251 ~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~~~~ 327 (339)
+....|++++ |.+++|+=+.+||=.|-++..++.+ ...+.+.+..+ ...|.++|+|.+||......
T Consensus 6 ~~~~~~~~~~-pyi~~~~~~~~VIk~gG~~~~~~~l---------~~~~~~di~~l-~~~g~~~VlVHGgg~~i~~~ 71 (284)
T CHL00202 6 ERVQVLSEAL-PYIQKFRGRIMVIKYGGAAMKNLIL---------KADIIKDILFL-SCIGLKIVVVHGGGPEINFW 71 (284)
T ss_pred HHHHHHHHHH-HHHHHHcCCeEEEEEChHHhcCcch---------HHHHHHHHHHH-HHCCCcEEEEeCCcHHHHHH
Confidence 4466777774 6779999999999988766543322 22222333332 34788999999999955433
No 172
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=27.67 E-value=63 Score=30.93 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhcCCCEEEE
Q 019524 256 LDEALEVAGHTFDPELVIY 274 (339)
Q Consensus 256 ~~~~l~p~~~~f~PdlIvv 274 (339)
+.+.|..++++++||+||.
T Consensus 109 ~~~~L~~iIr~~~PdvVvT 127 (283)
T TIGR03446 109 AAEPLVRVIREFRPHVITT 127 (283)
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 3455566789999998875
No 173
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=27.47 E-value=1.8e+02 Score=29.60 Aligned_cols=59 Identities=10% Similarity=0.069 Sum_probs=39.2
Q ss_pred CChHHHHHHHHHH---HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhh-CCCCEEEEe
Q 019524 247 TTTNEYLKKLDEA---LEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARS-RNIPIVMLT 318 (339)
Q Consensus 247 ~~d~~yl~a~~~~---l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~-~~~p~v~vl 318 (339)
+||.-|.+-.+++ +...++.++||++|--=.|++ ..|..+...+.+..++ .++|++..+
T Consensus 52 CGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNa-------------grYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 52 CGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNA-------------GRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred ECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCC-------------ccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 4555555434443 455679999999987666554 3377777777665444 699988766
No 174
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=27.46 E-value=1.8e+02 Score=29.58 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=39.4
Q ss_pred CChHHHHHHHHHH---HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhh-CCCCEEEEe
Q 019524 247 TTTNEYLKKLDEA---LEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARS-RNIPIVMLT 318 (339)
Q Consensus 247 ~~d~~yl~a~~~~---l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~-~~~p~v~vl 318 (339)
+||.-|.+-.+++ +...++.++||++|--=.|++ ..|..+...+.+..++ .++|++..+
T Consensus 52 CGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNa-------------grYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 52 CGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNA-------------GRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred ECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCC-------------ccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 4565555434444 455679999999987666554 3377777777665444 699988766
No 175
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=27.26 E-value=10 Score=28.38 Aligned_cols=54 Identities=19% Similarity=0.378 Sum_probs=36.3
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCC
Q 019524 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNI 312 (339)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~ 312 (339)
++..+.++|+-++=|++++.|-..+.|+|.|-+.-.|=..-.+...++.++.++
T Consensus 18 iis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v 71 (76)
T PF09383_consen 18 IISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGV 71 (76)
T ss_dssp HHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCC
Confidence 456677899999999999999999999998866542222222334445455543
No 176
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=27.25 E-value=2e+02 Score=24.31 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=24.2
Q ss_pred CCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhC
Q 019524 269 PELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR 310 (339)
Q Consensus 269 PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~ 310 (339)
||+||+..|. |...+ ...+.+.|...-+.+++.+++.
T Consensus 56 pd~vii~~G~ND~~~~-----~~~~~~~~~~~~~~li~~i~~~ 93 (169)
T cd01831 56 PDLVVINLGTNDFSTG-----NNPPGEDFTNAYVEFIEELRKR 93 (169)
T ss_pred CCEEEEECCcCCCCCC-----CCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999997 54322 1245666666666666666554
No 177
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=26.98 E-value=87 Score=27.31 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=30.1
Q ss_pred cCCCEEEEEcCC-CCCCCCC-------CCCCccCHHHHHHHHHHHHHHHhhC--CCCEEEE
Q 019524 267 FDPELVIYNAGT-DILEGDP-------LGMLKISPDGIAARDEKTFRFARSR--NIPIVML 317 (339)
Q Consensus 267 f~PdlIvvsaG~-D~~~~Dp-------lg~~~lt~~g~~~~~~~l~~~a~~~--~~p~v~v 317 (339)
.+||+|++..|. |....-+ ...+..+.+.|...-+.+.+.+++. +.+++++
T Consensus 67 ~~~d~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~ 127 (204)
T cd04506 67 KKADVITITIGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLV 127 (204)
T ss_pred ccCCEEEEEecchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 589999999998 6543211 2233344566666555566666654 3455544
No 178
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=26.92 E-value=71 Score=30.60 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=11.5
Q ss_pred CeEEEEeccCcCCc
Q 019524 191 SRVMIIDLDAHQGN 204 (339)
Q Consensus 191 ~RV~IiD~DvHHGn 204 (339)
+||++||.|...|+
T Consensus 123 ~~VlLvD~D~~~~~ 136 (322)
T TIGR03815 123 LRTLLVDADPWGGG 136 (322)
T ss_pred CCEEEEecCCCCCC
Confidence 69999999976653
No 179
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=26.69 E-value=2.1e+02 Score=28.06 Aligned_cols=56 Identities=20% Similarity=0.360 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCC
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPI 322 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY 322 (339)
+.+.+.+..+.++++|++|+|.... ....+|. +..+.+ ++-++.+.|++.+--.||
T Consensus 60 ~kL~~~i~~~~~~~~P~~i~v~~sC~~~iIGdD----------~~~v~~---~~~~~~~~~vi~v~~~gf 116 (398)
T PF00148_consen 60 EKLREAIKEIAEKYKPKAIFVVTSCVPEIIGDD----------IEAVAR---ELQEEYGIPVIPVHTPGF 116 (398)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEEE-HHHHHTTTT----------HHHHHH---HHHHHHSSEEEEEE--TT
T ss_pred hhHHHHHHHHHhcCCCcEEEEECCCCHHHhCCC----------HHHHHH---HhhcccCCcEEEEECCCc
Confidence 4455666677788999998775543 4444442 333222 223445778999999999
No 180
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=26.56 E-value=66 Score=30.65 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=15.7
Q ss_pred HHHHHcCCCeEEEEeccCcCCcchh
Q 019524 183 YAFVQLNISRVMIIDLDAHQGNGHE 207 (339)
Q Consensus 183 ~l~~~~~~~RV~IiD~DvHHGnGTq 207 (339)
+++.+.| +||++||+|.. ||=|+
T Consensus 22 ~~La~~G-~rVLlID~DpQ-~n~t~ 44 (290)
T CHL00072 22 IALARRG-KKVLQIGCDPK-HDSTF 44 (290)
T ss_pred HHHHHCC-CeEEEEeccCC-Ccccc
Confidence 3444556 69999999987 55443
No 181
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=26.35 E-value=4.8e+02 Score=25.46 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=22.3
Q ss_pred HHHHH-HHHHHHHHHHhhcCCCEEEEEcCCCC
Q 019524 250 NEYLK-KLDEALEVAGHTFDPELVIYNAGTDI 280 (339)
Q Consensus 250 ~~yl~-a~~~~l~p~~~~f~PdlIvvsaG~D~ 280 (339)
++|.. .+...|..++.+|+||+|-.-.|...
T Consensus 187 ~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~ 218 (346)
T PF01120_consen 187 QRYYNEYWLAQLRELLTRYKPDILWFDGGWPD 218 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCSTESEEEEESTTSC
T ss_pred HhHhhhhhHHHHHHHHhCCCcceEEecCCCCc
Confidence 34444 66677788889999999987666544
No 182
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=26.32 E-value=1.7e+02 Score=30.08 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=36.0
Q ss_pred HHHhhcCCCEEEEEcCCCCCCCCCCCCC--ccCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 019524 262 VAGHTFDPELVIYNAGTDILEGDPLGML--KISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (339)
Q Consensus 262 p~~~~f~PdlIvvsaG~D~~~~Dplg~~--~lt~~g~~~~~~~l~~~a~~~~~p~v~vle 319 (339)
..+++++|+.||| |++..+ .++.+.+.+....|.+++++.++.++++.|
T Consensus 347 ~~i~~~~~~~vvI---------Dsi~~~~~~~~~~~~r~~~~~l~~~lk~~~it~~~t~~ 397 (484)
T TIGR02655 347 SEIADFKPARIAI---------DSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNT 397 (484)
T ss_pred HHHHHcCCCEEEE---------cCHHHHHHhcCHHHHHHHHHHHHHHHhhCCCeEEEeec
Confidence 4458899999987 666643 245666666666688888989999888754
No 183
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=26.10 E-value=4e+02 Score=24.94 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCCC--EEEE-------EcCCCCCCC-CCCCCCccC-HHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 249 TNEYLKKLDEALEVAGHTFDPE--LVIY-------NAGTDILEG-DPLGMLKIS-PDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 249 d~~yl~a~~~~l~p~~~~f~Pd--lIvv-------saG~D~~~~-Dplg~~~lt-~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
+.+.+..+.+++..+-. +|+ .||+ |+|.|...- ++....... ...|......++.....+..|+|+.
T Consensus 42 ~~~~~~eL~~~l~~~~~--d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 119 (277)
T PRK08258 42 TFESYAELRDLFRELVY--ADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAA 119 (277)
T ss_pred CHHHHHHHHHHHHHHhc--CCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 45566677777765532 455 3554 555655431 100000000 1122222223333344578899876
Q ss_pred eCC
Q 019524 318 TSG 320 (339)
Q Consensus 318 leG 320 (339)
..|
T Consensus 120 V~G 122 (277)
T PRK08258 120 VDG 122 (277)
T ss_pred ECC
Confidence 654
No 184
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=25.91 E-value=72 Score=30.79 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCCeEEEEeccCcCCcchhhhh
Q 019524 177 ISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDF 210 (339)
Q Consensus 177 vAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if 210 (339)
++.+++|+.++.|.+||++|--|.=.|.+..+.|
T Consensus 121 ~~~~~~~~~~~~g~k~v~~l~~d~~~g~~~~~~~ 154 (359)
T TIGR03407 121 IIPAVDYLLSKKGAKRFFLLGSDYVFPRTANKII 154 (359)
T ss_pred HHHHHHHHHhccCCceEEEecCccHHHHHHHHHH
Confidence 4556688877668899999977765666665555
No 185
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=25.89 E-value=2.4e+02 Score=28.32 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcC-CCCCCCCCCCCCccCHHHHHHHHHHHHHHHh----hCCCCEEEEeCCCCCh
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAG-TDILEGDPLGMLKISPDGIAARDEKTFRFAR----SRNIPIVMLTSGPITS 324 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~----~~~~p~v~vleGGY~~ 324 (339)
..+.+.|..+.++++|++|+|... .....+|.+ ..+.+ ++-+ ..+.|++.+--.||..
T Consensus 67 ~~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi----------~~v~~---~~~~~~~~~~~~~vi~v~tpgf~g 129 (428)
T cd01965 67 DNLIEALKNLLSRYKPDVIGVLTTCLTETIGDDV----------AGFIK---EFRAEGPEPADFPVVYASTPSFKG 129 (428)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcchhhcCCCH----------HHHHH---HHHhhccCCCCCeEEEeeCCCCCC
Confidence 345566666778899997665444 455666642 22222 2222 2477888888888853
No 186
>PRK05409 hypothetical protein; Provisional
Probab=25.69 E-value=5.2e+02 Score=24.80 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=60.3
Q ss_pred hhcCCCcEEEEEeeCCCCCCCCccc-------CC-------ccccccccCCCCChHHHHHHHHHHHHHHHhhcCCCEE--
Q 019524 209 DFSSDSRVYILDMFNPGIYPRDYEA-------RR-------FIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELV-- 272 (339)
Q Consensus 209 if~~d~~Vl~iSiH~~~~yP~tg~~-------~~-------~~~~NvPL~~g~~d~~yl~a~~~~l~p~~~~f~PdlI-- 272 (339)
+....++|=++=+|..+++...|.. .+ |..+++-=+.+ -|.+|++.++.. +++++|-.+
T Consensus 21 ~l~~~~~vdf~Ev~~EN~~~~gg~~~~~L~~i~e~~Pv~~HGv~LslGs~~~-ld~~~L~~l~~l----~~~~~~~~vSe 95 (281)
T PRK05409 21 ILALKPDVDFFEVHPENYMGAGGPPLAQLDAIRERYPLSLHGVSLSLGGAAP-LDKDHLKRLKAL----ADRYQPPLVSE 95 (281)
T ss_pred HHhCCCCCCEEEECcccccCcCCchHHHHHHHHhcCCEEEcccccccCCCCC-CCHHHHHHHHHH----HHHHCCCEEEe
Confidence 3444456667777777666433321 11 11222222222 377898877654 467888664
Q ss_pred --EEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEE
Q 019524 273 --IYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIV 315 (339)
Q Consensus 273 --vvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v 315 (339)
=++.. +.+.+|.+ -+-.|++....+.+.+.++-+..+.|++
T Consensus 96 HL~~~~~-g~~~~dLl-PlP~T~e~l~~v~~ri~~vQd~lgrpll 138 (281)
T PRK05409 96 HLAWSSD-GGHLYDLL-PLPYTEEALDHVAERIRQVQDILGRPLL 138 (281)
T ss_pred eeeeecC-CCccCccC-CCCCCHHHHHHHHHHHHHHHHHhCCCeE
Confidence 34433 66777744 5668999999999998776666687775
No 187
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=25.39 E-value=1.9e+02 Score=29.56 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=33.6
Q ss_pred HHHhhcCCCEEEEEcCCCCCCCCCCCCCcc--------CHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKI--------SPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 262 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l--------t~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
..+++.+|++||| |.+..+.. +...+.+....|.++|++.++.++++.
T Consensus 164 ~~i~~~~~~~vVI---------DSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~ 219 (454)
T TIGR00416 164 ANIEEENPQACVI---------DSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVG 219 (454)
T ss_pred HHHHhcCCcEEEE---------ecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 3447889999998 33333221 234567777789999999999988874
No 188
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=25.36 E-value=73 Score=31.18 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=15.9
Q ss_pred CeEEEEeccCcCCcchhhhhc
Q 019524 191 SRVMIIDLDAHQGNGHEKDFS 211 (339)
Q Consensus 191 ~RV~IiD~DvHHGnGTq~if~ 211 (339)
+||++||.|.++++ +..+|.
T Consensus 60 ~rVllid~D~~~~~-~~~~~g 79 (329)
T cd02033 60 KRVLLIGCDPKSDT-TSLLFG 79 (329)
T ss_pred CcEEEEEeeecccc-cchhcc
Confidence 69999999999865 555654
No 189
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=25.31 E-value=75 Score=31.90 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHCCCCCCCeeeCCCCCCHHHH---hccCChhHHHHhhc
Q 019524 59 SKWGRICQFLSSEGFLDKNCIVEPLEASKEDL---LVVHSESYLKSLQS 104 (339)
Q Consensus 59 ~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l---~~vHs~~Yv~~l~~ 104 (339)
+|+...++.+++..+.+.- -..++..+..|+ +.| ++.+|+....
T Consensus 24 ~~~~~~~~~~~~~~~~p~~-~k~~r~ft~~e~A~~lgv-s~~tlr~~~~ 70 (405)
T PRK13869 24 EQLSSQLQAMSEALFPPTS-HKSLRKFTSGEAARLMKI-SDSTLRKMTL 70 (405)
T ss_pred HHHHHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHhCc-CHHHHHHHHH
Confidence 5566666667666554432 233445555444 444 7888888754
No 190
>PRK08506 replicative DNA helicase; Provisional
Probab=25.22 E-value=2.4e+02 Score=28.89 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 293 PDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 293 ~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
......+++.|..+|+++++||+++
T Consensus 324 ~~ev~~isr~LK~lAkel~ipVi~l 348 (472)
T PRK08506 324 HLQISEISRGLKLLARELDIPIIAL 348 (472)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 4457788899999999999998876
No 191
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=25.15 E-value=3.3e+02 Score=25.26 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=18.2
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCEEEEE
Q 019524 246 GTTTNEYLKKLDEALEVAGHTFDPELVIYN 275 (339)
Q Consensus 246 g~~d~~yl~a~~~~l~p~~~~f~PdlIvvs 275 (339)
+.=+.+.+..+.+.+..+.++ ....||+.
T Consensus 26 Nal~~~~~~~l~~al~~~~~d-~v~~vvlt 54 (261)
T PRK11423 26 NALSKVLIDDLMQALSDLNRP-EIRVVILR 54 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhcC-CceEEEEE
Confidence 444677788888887766433 34556664
No 192
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=24.78 E-value=1.5e+02 Score=26.10 Aligned_cols=41 Identities=32% Similarity=0.327 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCC
Q 019524 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGML 289 (339)
Q Consensus 249 d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~ 289 (339)
|+.-...+.+.|...+....-++||++-|.|-..+|-||-|
T Consensus 5 ~~~a~~~l~~~L~~~~~~~~~~iv~lCIGTDRstGDsLGPL 45 (163)
T PF06866_consen 5 DKNAPEKLANFLYSLIPKHNREIVFLCIGTDRSTGDSLGPL 45 (163)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEEECCCCCccccccch
Confidence 44444455555555555557899999999999999988754
No 193
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=24.73 E-value=89 Score=29.89 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhcCCCEEEE--EcCCCCCC
Q 019524 256 LDEALEVAGHTFDPELVIY--NAGTDILE 282 (339)
Q Consensus 256 ~~~~l~p~~~~f~PdlIvv--saG~D~~~ 282 (339)
+.+.|..++++++||+||. ..|.|.|-
T Consensus 111 ~~~~l~~~Ir~~~PdvViT~~p~g~~~Hp 139 (284)
T TIGR03445 111 AAGALVAVIREVRPHVVVTYDPNGGYGHP 139 (284)
T ss_pred HHHHHHHHHHHhCCcEEEecCCCCCCCCc
Confidence 3345566779999998886 33444443
No 194
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=24.57 E-value=3.3e+02 Score=26.84 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=35.9
Q ss_pred CCCcccccchHHHHHHHHHHHc-CCC--eEEEEeccCcCCcchhhhhcCCCcEEEEEee
Q 019524 167 EGGGFCAYADISLCIHYAFVQL-NIS--RVMIIDLDAHQGNGHEKDFSSDSRVYILDMF 222 (339)
Q Consensus 167 ~a~GFC~fNnvAIAa~~l~~~~-~~~--RV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH 222 (339)
|-.||==+|--.|+-+++...+ +.+ ++++ +|=|+|.--....|.+++--|.-
T Consensus 147 RrygfHgls~~~v~~~~~~~~g~~~~~~~~I~----~hLGtGig~~ai~~Gk~vdgs~G 201 (351)
T TIGR02707 147 RKSIFHALNQKAVARRIAKELGKRYEEMNLIV----AHMGGGISVAAHRKGRVIDVNNA 201 (351)
T ss_pred hhhchhhhhHHHHHHHHHHHcCCCcccCCEEE----EEeCCCceeeeEECCEEEEcCCC
Confidence 4457777888888888765431 123 5655 47899999888888887766654
No 195
>KOG1069 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp46 [Translation, ribosomal structure and biogenesis]
Probab=24.44 E-value=1.3e+02 Score=27.53 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=33.6
Q ss_pred CcCCcchhhhhcCCCcEEEEEeeCCCCCCCCc----ccCCccccccccCCCCChHHHH
Q 019524 200 AHQGNGHEKDFSSDSRVYILDMFNPGIYPRDY----EARRFIDQKVEVVSGTTTNEYL 253 (339)
Q Consensus 200 vHHGnGTq~if~~d~~Vl~iSiH~~~~yP~tg----~~~~~~~~NvPL~~g~~d~~yl 253 (339)
.||-||..+.-+.|-+|+ +|+|+. ... +..+.-++.|-+.|..|+....
T Consensus 15 Lsr~dGSs~fsqgdT~V~-c~V~GP----~dvk~r~E~~~katleVi~rp~~G~~~~~ 67 (217)
T KOG1069|consen 15 LSRPDGSSEFSQGDTKVI-CSVYGP----IDVKARQEDPEKATLEVIWRPKSGVNGTV 67 (217)
T ss_pred ecCCCCccceecCCcEEE-EEeeCC----cchhhcccCchhceEEEEEecccCcchHH
Confidence 379999999999999887 677762 222 1223456788887777765544
No 196
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=24.44 E-value=1.6e+02 Score=27.89 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCC
Q 019524 253 LKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPIT 323 (339)
Q Consensus 253 l~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~ 323 (339)
+.++++-|..+..+|++|+||+.+ +.--|++.+|.+-|..+ .+.|+-++..+.-=|+
T Consensus 15 r~~v~~~Lp~lk~kyk~dfvI~N~------ENaa~G~Git~k~y~~l--------~~~G~dviT~GNH~wd 71 (266)
T COG1692 15 RKAVKEHLPQLKSKYKIDFVIVNG------ENAAGGFGITEKIYKEL--------LEAGADVITLGNHTWD 71 (266)
T ss_pred HHHHHHHhHHHHHhhcCcEEEEcC------ccccCCcCCCHHHHHHH--------HHhCCCEEeccccccc
Confidence 467788888899999999999865 44567888998888753 3346666665554443
No 197
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.18 E-value=2.6e+02 Score=27.64 Aligned_cols=110 Identities=16% Similarity=0.274 Sum_probs=64.6
Q ss_pred CCeEEEEeccCcC--CcchhhhhcCCCcEEEEEeeCCCCCCCCcccCCccccccccCCCCChHHHHHHHHHHHHHHHhhc
Q 019524 190 ISRVMIIDLDAHQ--GNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTF 267 (339)
Q Consensus 190 ~~RV~IiD~DvHH--GnGTq~if~~d~~Vl~iSiH~~~~yP~tg~~~~~~~~NvPL~~g~~d~~yl~a~~~~l~p~~~~f 267 (339)
.+||+++-==.=. +.|.+..|.+++.|-....-.. -.|..-++|..-.+.+. .++.+.
T Consensus 116 a~kvLvvGDslm~gla~gl~~al~t~~~i~i~~~sn~-------------------SSGlvr~dYfdWpk~i~-~~l~~~ 175 (354)
T COG2845 116 ADKVLVVGDSLMQGLAEGLDKALATSPGITIVTRSNG-------------------SSGLVRDDYFDWPKAIP-ELLDKH 175 (354)
T ss_pred CCEEEEechHHhhhhHHHHHHHhccCCCcEEEEeecC-------------------CCCcccccccccHHHHH-HHHHhc
Confidence 4666666311111 3456667777777765443211 02233444544444333 344555
Q ss_pred -CCCEEEEEcCC----CCCCCCCCCCCc--cCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 019524 268 -DPELVIYNAGT----DILEGDPLGMLK--ISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (339)
Q Consensus 268 -~PdlIvvsaG~----D~~~~Dplg~~~--lt~~g~~~~~~~l~~~a~~~~~p~v~vle 319 (339)
+|-.|||..|. |...+|-+-.+. --.+.|.++...++++|.....|+++++-
T Consensus 176 ~~~a~vVV~lGaND~q~~~~gd~~~kf~S~~W~~eY~kRvd~~l~ia~~~~~~V~WvGm 234 (354)
T COG2845 176 PKPAAVVVMLGANDRQDFKVGDVYEKFRSDEWTKEYEKRVDAILKIAHTHKVPVLWVGM 234 (354)
T ss_pred CCccEEEEEecCCCHHhcccCCeeeecCchHHHHHHHHHHHHHHHHhcccCCcEEEeeC
Confidence 99999999996 333344222221 12577888999999999888999998864
No 198
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=24.09 E-value=5.8e+02 Score=24.22 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=52.9
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHh----hc--CCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCC
Q 019524 239 QKVEVVSGTTTNEYLKKLDEALEVAGH----TF--DPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRN 311 (339)
Q Consensus 239 ~NvPL~~g~~d~~yl~a~~~~l~p~~~----~f--~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~ 311 (339)
+|+..+.. .-.+.....+.++..+.+ .| ++++|+|..|. |......-. ...+.+.|.+--+.+++..++..
T Consensus 85 ~N~av~Ga-~s~dL~~qa~~lv~r~~~~~~i~~~~dwklVtI~IG~ND~c~~~~~~-~~~~~~~~~~nL~~~L~~Lr~~~ 162 (288)
T cd01824 85 FNVAEPGA-KSEDLPQQARLLVRRMKKDPRVDFKNDWKLITIFIGGNDLCSLCEDA-NPGSPQTFVKNLRKALDILRDEV 162 (288)
T ss_pred eeecccCc-chhhHHHHHHHHHHHHhhccccccccCCcEEEEEecchhHhhhcccc-cCcCHHHHHHHHHHHHHHHHHhC
Confidence 46655433 344555444444444321 24 46679999887 776421111 12568888887777888888776
Q ss_pred CCEEEEeCCCCChhH
Q 019524 312 IPIVMLTSGPITSEK 326 (339)
Q Consensus 312 ~p~v~vleGGY~~~~ 326 (339)
.+..+++-|=|+...
T Consensus 163 P~~~V~lv~~~~~~~ 177 (288)
T cd01824 163 PRAFVNLVGLLNVAS 177 (288)
T ss_pred CCcEEEEEcCCCcHH
Confidence 677788888887643
No 199
>PF13050 DUF3911: Protein of unknown function (DUF3911)
Probab=24.07 E-value=30 Score=25.84 Aligned_cols=9 Identities=33% Similarity=1.106 Sum_probs=7.7
Q ss_pred CcccccchH
Q 019524 169 GGFCAYADI 177 (339)
Q Consensus 169 ~GFC~fNnv 177 (339)
.|||-|||-
T Consensus 26 kgfckf~ny 34 (77)
T PF13050_consen 26 KGFCKFNNY 34 (77)
T ss_pred ccccccCCE
Confidence 589999994
No 200
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=23.99 E-value=2.3e+02 Score=27.62 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=32.2
Q ss_pred cCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCC
Q 019524 267 FDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRN 311 (339)
Q Consensus 267 f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~ 311 (339)
-+|.+|+|..|. |+..+..-..=.++.+.|++--+.+++..++..
T Consensus 121 ~~P~lVtI~lGgND~C~g~~d~~~~tp~eefr~NL~~~L~~Lr~~l 166 (305)
T cd01826 121 DKPALVIYSMIGNDVCNGPNDTINHTTPEEFYENVMEALKYLDTKL 166 (305)
T ss_pred CCCeEEEEEeccchhhcCCCccccCcCHHHHHHHHHHHHHHHHhcC
Confidence 479999998777 888763211114889999887777777777763
No 201
>PRK11823 DNA repair protein RadA; Provisional
Probab=23.97 E-value=1.9e+02 Score=29.38 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=32.5
Q ss_pred HHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 263 AGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 263 ~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
.+++.+|++|||-.= -+...+.+....=+...+.+....|.+++++.+++++++.
T Consensus 151 ~i~~~~~~lVVIDSI-q~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~ 205 (446)
T PRK11823 151 TIEEEKPDLVVIDSI-QTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVG 205 (446)
T ss_pred HHHhhCCCEEEEech-hhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 347789999997210 0001111111111344566677778999999999988874
No 202
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=23.97 E-value=1e+02 Score=28.25 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=34.9
Q ss_pred hcceeeccCCCCCCCCCCCCcccccchHHHHHHHHHHHcCCCeEEEEeccCc-CCcc
Q 019524 150 RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAH-QGNG 205 (339)
Q Consensus 150 ~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l~~~~~~~RV~IiD~DvH-HGnG 205 (339)
+|.++....| ++....|+..|..=.|+.. +..|++++-|+|+|.= .|.+
T Consensus 10 ~G~~Vr~~~G------~~~~~~~~~~dP~~~a~~~-~~~g~~~l~ivDLdaa~~g~~ 59 (229)
T PF00977_consen 10 NGRVVRLVKG------DRFSETVYSGDPVEVAKAF-NEQGADELHIVDLDAAKEGRG 59 (229)
T ss_dssp TTEEEEESTT------CCSCEECECCCHHHHHHHH-HHTT-SEEEEEEHHHHCCTHH
T ss_pred CCEEEECCCe------ecceeeEECcCHHHHHHHH-HHcCCCEEEEEEccCcccCch
Confidence 4556655555 4566788888887777776 5678999999999965 3655
No 203
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=23.96 E-value=4.2e+02 Score=26.61 Aligned_cols=23 Identities=26% Similarity=0.162 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCEEEE
Q 019524 251 EYLKKLDEALEVAGHTFDPELVIY 274 (339)
Q Consensus 251 ~yl~a~~~~l~p~~~~f~PdlIvv 274 (339)
+....++.++. .+.+.+||+||+
T Consensus 23 ~~~~~l~~l~~-~i~~~~~D~viI 45 (407)
T PRK10966 23 EHQAFLDWLLE-QVQEHQVDAIIV 45 (407)
T ss_pred HHHHHHHHHHH-HHHhcCCCEEEE
Confidence 45555555554 457899999987
No 204
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=23.79 E-value=56 Score=30.18 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=14.2
Q ss_pred HHHcCCCeEEEEeccCcCCcchhh
Q 019524 185 FVQLNISRVMIIDLDAHQGNGHEK 208 (339)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHGnGTq~ 208 (339)
+.+.| ||++||+|.. ||-|+.
T Consensus 26 La~~G--rVLliD~Dpq-~~~~~~ 46 (264)
T PRK13231 26 YSNDH--RVLVIGCDPK-ADTTRT 46 (264)
T ss_pred cCCCC--EEEEEeEccC-cccchh
Confidence 34456 8999999987 343433
No 205
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=23.59 E-value=3.7e+02 Score=26.41 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhCCCCEEEEeC
Q 019524 295 GIAARDEKTFRFARSRNIPIVMLTS 319 (339)
Q Consensus 295 g~~~~~~~l~~~a~~~~~p~v~vle 319 (339)
+=.++.+.|.+.+.+.++++..+-+
T Consensus 153 gd~eLA~~I~~~l~~~G~d~~~~~~ 177 (335)
T PRK13363 153 VVPELARHMIRRLVDDGFDITALDR 177 (335)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeecc
Confidence 3456777788887777888876543
No 206
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=23.46 E-value=5.4e+02 Score=23.70 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=16.3
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCC--EEEE
Q 019524 247 TTTNEYLKKLDEALEVAGHTFDPE--LVIY 274 (339)
Q Consensus 247 ~~d~~yl~a~~~~l~p~~~~f~Pd--lIvv 274 (339)
.=+.+.+..|.+.+..+- .+|+ .||+
T Consensus 23 al~~~~~~~l~~~l~~~~--~~~~vr~vVl 50 (251)
T TIGR03189 23 IVDAAMIAALSAALGEHL--EDSALRAVLL 50 (251)
T ss_pred CCCHHHHHHHHHHHHHHH--cCCCceEEEE
Confidence 336667788888877663 3555 4554
No 207
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=23.40 E-value=2.8e+02 Score=24.50 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCc-----------cCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLK-----------ISPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 249 d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~-----------lt~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
-++.+..+++++. ..++.++++||| |++..+- -....+.++...|.++|+++++.++++
T Consensus 96 ~~~~~~~l~~~~~-~~~~~~~~lvVI---------Dsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t 165 (226)
T cd01393 96 GEQQLEIVEELER-IMSSGRVDLVVV---------DSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFT 165 (226)
T ss_pred HHHHHHHHHHHHH-HhhcCCeeEEEE---------cCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEE
Confidence 3455666665543 346789999988 4444321 011234556667888888889888775
Q ss_pred e
Q 019524 318 T 318 (339)
Q Consensus 318 l 318 (339)
-
T Consensus 166 n 166 (226)
T cd01393 166 N 166 (226)
T ss_pred E
Confidence 4
No 208
>PRK10812 putative DNAse; Provisional
Probab=23.34 E-value=6.2e+02 Score=23.68 Aligned_cols=113 Identities=11% Similarity=0.105 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHcCCCeEEEEeccCcCCcchhhhhcCCCcEEE-EEeeCCCCCCCCcccCCccccccccCCCCChHHHHH
Q 019524 176 DISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYI-LDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLK 254 (339)
Q Consensus 176 nvAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~-iSiH~~~~yP~tg~~~~~~~~NvPL~~g~~d~~yl~ 254 (339)
|.--.++.+++. |+++++++=.|..--.-+.++....|.|+. +-+| |.. ++ +++.+.
T Consensus 21 d~~~vl~~a~~~-gv~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~GiH-----P~~----------~~------~~~~~~ 78 (265)
T PRK10812 21 DVDDVLAKAAAR-DVKFCLAVATTLPGYRHMRDLVGERDNVVFSCGVH-----PLN----------QD------EPYDVE 78 (265)
T ss_pred CHHHHHHHHHHc-CCCEEEEeCCCHHHHHHHHHHHhhCCCeEEEEEeC-----CCC----------CC------ChhHHH
Confidence 554455666554 789999998888877778888777777654 3455 321 10 112233
Q ss_pred HHHHHHHHHHhhcCCCEEEE-EcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCC
Q 019524 255 KLDEALEVAGHTFDPELVIY-NAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPI 322 (339)
Q Consensus 255 a~~~~l~p~~~~f~PdlIvv-saG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY 322 (339)
.+.+ +++ +|.++-| =.|.|-++... . .+--.+.-+..+++|++.+.|+++=--++.
T Consensus 79 ~l~~----~~~--~~~vvaIGEiGLD~~~~~~--~----~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~ 135 (265)
T PRK10812 79 ELRR----LAA--EEGVVAMGETGLDYYYTPE--T----KVRQQESFRHHIQIGRELNKPVIVHTRDAR 135 (265)
T ss_pred HHHH----Hhc--CCCEEEEEeeecCcCCCCC--C----HHHHHHHHHHHHHHHHHhCCCeEEEeeCch
Confidence 3333 222 4777777 89999875321 1 222333445567888888889887555544
No 209
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=23.34 E-value=2e+02 Score=22.01 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=12.6
Q ss_pred hhCCCCEEEEeCCCCChh
Q 019524 308 RSRNIPIVMLTSGPITSE 325 (339)
Q Consensus 308 ~~~~~p~v~vleGGY~~~ 325 (339)
.+.|-.=+..|+|||..+
T Consensus 82 ~~~G~~~v~~l~GG~~~W 99 (101)
T cd01518 82 KERGFKNVYQLKGGILKY 99 (101)
T ss_pred HHhCCcceeeechhHHHH
Confidence 445655578899999654
No 210
>PRK11670 antiporter inner membrane protein; Provisional
Probab=23.32 E-value=92 Score=30.88 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=16.0
Q ss_pred HHHcCCCeEEEEeccCcCCcchhhhh
Q 019524 185 FVQLNISRVMIIDLDAHQGNGHEKDF 210 (339)
Q Consensus 185 ~~~~~~~RV~IiD~DvHHGnGTq~if 210 (339)
+.+.| +||++||.|....+ +..+|
T Consensus 132 LA~~G-~rVlLID~D~qgps-~~~~l 155 (369)
T PRK11670 132 LAAEG-AKVGILDADIYGPS-IPTML 155 (369)
T ss_pred HHHCC-CcEEEEeCCCCCCC-cchhc
Confidence 33445 69999999997643 33344
No 211
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=23.29 E-value=2.8e+02 Score=27.11 Aligned_cols=26 Identities=12% Similarity=-0.074 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEE
Q 019524 249 TNEYLKKLDEALEVAGHTFDPELVIY 274 (339)
Q Consensus 249 d~~yl~a~~~~l~p~~~~f~PdlIvv 274 (339)
-..-+...-..+..++++.+||+|||
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~Pd~Vlv 73 (346)
T PF02350_consen 48 MAKSTGLAIIELADVLEREKPDAVLV 73 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 34445555566778889999999998
No 212
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=23.18 E-value=2.6e+02 Score=27.31 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCh
Q 019524 257 DEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITS 324 (339)
Q Consensus 257 ~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~ 324 (339)
.+.+..+.++++|++|+|..+. ....+|. +..+.+.+ -+..+.|++.+-..||..
T Consensus 69 ~~~i~~~~~~~~p~~i~v~~tc~~~liGdD----------i~~v~~~~---~~~~~~~vv~~~~~gf~~ 124 (399)
T cd00316 69 LEAIINELKRYKPKVIFVYTTCTTELIGDD----------IEAVAKEA---SKEIGIPVVPASTPGFRG 124 (399)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhhhhccC----------HHHHHHHH---HHhhCCceEEeeCCCCcc
Confidence 3444455688899988776554 4444442 33322222 224588999999999963
No 213
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=22.94 E-value=2.8e+02 Score=25.22 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=41.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcc------CH---HHHHHHHHHHHHHHhhCCCCE
Q 019524 244 VSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKI------SP---DGIAARDEKTFRFARSRNIPI 314 (339)
Q Consensus 244 ~~g~~d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l------t~---~g~~~~~~~l~~~a~~~~~p~ 314 (339)
+.++=+.+.+..+.+++..+-.+-+..+||++.+-+.. ..+.++ +. ..+....+.+......+..|+
T Consensus 18 ~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F----~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~ 93 (245)
T PF00378_consen 18 KRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAF----CAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPT 93 (245)
T ss_dssp GTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSES----BESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeeccccc----ccccchhhhhccccccccccchhhccccccchhhhhhe
Confidence 34445777888888888877554444477776643221 222232 11 223333333444445578899
Q ss_pred EEEeCC
Q 019524 315 VMLTSG 320 (339)
Q Consensus 315 v~vleG 320 (339)
|+.+.|
T Consensus 94 Iaav~G 99 (245)
T PF00378_consen 94 IAAVNG 99 (245)
T ss_dssp EEEESS
T ss_pred eecccc
Confidence 988875
No 214
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=22.83 E-value=4e+02 Score=28.50 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=15.2
Q ss_pred cccccCCC-CChHHHHHHHHHH
Q 019524 239 QKVEVVSG-TTTNEYLKKLDEA 259 (339)
Q Consensus 239 ~NvPL~~g-~~d~~yl~a~~~~ 259 (339)
+..|.... .+|++..+++.++
T Consensus 476 l~YP~~~~~~~d~~l~~vL~~v 497 (604)
T COG4178 476 LCYPNAAPDFSDAELVAVLHKV 497 (604)
T ss_pred HhCCCCCCCCChHHHHHHHHHc
Confidence 45566543 7899998888776
No 215
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=22.76 E-value=88 Score=29.36 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHcCCCeEEEEeccC
Q 019524 176 DISLCIHYAFVQLNISRVMIIDLDA 200 (339)
Q Consensus 176 nvAIAa~~l~~~~~~~RV~IiD~Dv 200 (339)
.++.+..+++.+.| ++|+.||+|.
T Consensus 17 TltAnLA~aL~~~G-~~VlaID~dp 40 (243)
T PF06564_consen 17 TLTANLAWALARLG-ESVLAIDLDP 40 (243)
T ss_pred HHHHHHHHHHHHCC-CcEEEEeCCc
Confidence 34555566677777 7999999994
No 216
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=22.37 E-value=4.2e+02 Score=26.73 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHH
Q 019524 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFR 305 (339)
Q Consensus 249 d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~ 305 (339)
.++...+|++++.-+ .+-+||+||++ ||=+-.-.-+.+...+..+.+.+
T Consensus 24 ~~D~~~~f~eil~~a-~~~~vD~VLia-------GDLFd~~~Ps~~~~~~~~~~lr~ 72 (405)
T TIGR00583 24 GDDSWNTFEEVLQIA-KEQDVDMILLG-------GDLFHENKPSRKSLYQVLRSLRL 72 (405)
T ss_pred hhhHHHHHHHHHHHH-HHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHH
Confidence 456778899988755 78899999873 44444444567777776666655
No 217
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=22.31 E-value=2.2e+02 Score=28.62 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhc-CCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhhC-CCCEEEEeCCCCCh
Q 019524 254 KKLDEALEVAGHTF-DPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR-NIPIVMLTSGPITS 324 (339)
Q Consensus 254 ~a~~~~l~p~~~~f-~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~-~~p~v~vleGGY~~ 324 (339)
..+.+.+..+++++ +|++|+|.... -...+|.+ ..+.+ ++-++. +.|++.+-..||..
T Consensus 82 ~~L~~ai~ei~~~~~~P~~I~V~tTC~~e~IGDDi----------~~v~~---e~~~~~~~~pvv~v~t~Gf~g 142 (427)
T PRK02842 82 EELDRVVEELIKRRPNISVLFLVGSCPSEVIKLDL----------EGLAE---RLSTEFAGVPVLNYSGSGLET 142 (427)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCChHHhhcCCH----------HHHHH---HhhcccCCCeEEEeeCCCccc
Confidence 34455555545555 89998887664 44444432 11111 111223 67788777777743
No 218
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=22.24 E-value=2.4e+02 Score=26.82 Aligned_cols=74 Identities=7% Similarity=0.085 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEE-----cCC--CC------CCCCC--CCCC------ccCHHHHHHHHHHHHHHHh
Q 019524 250 NEYLKKLDEALEVAGHTFDPELVIYN-----AGT--DI------LEGDP--LGML------KISPDGIAARDEKTFRFAR 308 (339)
Q Consensus 250 ~~yl~a~~~~l~p~~~~f~PdlIvvs-----aG~--D~------~~~Dp--lg~~------~lt~~g~~~~~~~l~~~a~ 308 (339)
+...++++++-..+ ++++||.|||- .+| |. ..++- ++.+ ..+..+=.++++.|.+.+.
T Consensus 31 ~~~~~a~~~i~~~v-~~~~PDviVvi~sdH~~~f~~d~~p~f~Ig~~~~~~~~~~g~~~~~~~~~~g~~eLA~~i~~~~~ 109 (279)
T PRK13365 31 KPLFDGYEPVAAWL-AEQKADVLVFFYNDHCTTFFFDLYPTFALGVGERFPVADEGAGLRPLPPIRGDVQLQAHIAECLV 109 (279)
T ss_pred HHHHHHHHHHHHHH-HHhCCCEEEEEcCchHHHhccccCCceEEEecccccccccccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 56667777765555 89999999988 566 65 11221 2222 1234555677778888887
Q ss_pred hCCCCEEEEeCCCCCh
Q 019524 309 SRNIPIVMLTSGPITS 324 (339)
Q Consensus 309 ~~~~p~v~vleGGY~~ 324 (339)
+.++++....+-+.+.
T Consensus 110 ~~g~~~~~~~~~~lDH 125 (279)
T PRK13365 110 NDEFDLTVFQDKPIDH 125 (279)
T ss_pred HcCCCeeeccCCCCCc
Confidence 7788877665555543
No 219
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=22.22 E-value=1.8e+02 Score=27.05 Aligned_cols=55 Identities=24% Similarity=0.388 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vle 319 (339)
..+++++..+ .+.+||+||+ +| |.-.+. ... +.+.|.. +.+..++.++|+.++.|
T Consensus 27 ~~l~~~i~~i-~~~~~d~vv~-~G-Dlv~~~---~~~-~~~~~~~----~~~~l~~l~~p~~~v~G 81 (267)
T cd07396 27 EKLEEAVEEW-NRESLDFVVQ-LG-DIIDGD---NAR-AEEALDA----VLAILDRLKGPVHHVLG 81 (267)
T ss_pred HHHHHHHHHH-HcCCCCEEEE-CC-CeecCC---Cch-HHHHHHH----HHHHHHhcCCCEEEecC
Confidence 5666766656 5567998764 44 322111 100 2344544 34445566788877664
No 220
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.07 E-value=5.9e+02 Score=24.11 Aligned_cols=33 Identities=9% Similarity=0.182 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCCeEEEEeccCcCCcchhhhh
Q 019524 178 SLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDF 210 (339)
Q Consensus 178 AIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if 210 (339)
...++++.++.+.+||++|=-|-..|+...+.|
T Consensus 132 ~~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~~~ 164 (362)
T cd06343 132 RIYAKYLVEEKPNAKIAVLYQNDDFGKDYLKGL 164 (362)
T ss_pred HHHHHHHHHhCCCceEEEEEeccHHHHHHHHHH
Confidence 456677877778899999977777777666655
No 221
>PRK10425 DNase TatD; Provisional
Probab=22.02 E-value=6.5e+02 Score=23.45 Aligned_cols=110 Identities=15% Similarity=0.155 Sum_probs=65.1
Q ss_pred chHHHHHHHHHHHcCCCeEEEEeccCcCCcchhhhhcCCCcEEE-EEeeCCCCCCCCcccCCccccccccCCCCChHHHH
Q 019524 175 ADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYI-LDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYL 253 (339)
Q Consensus 175 NnvAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~-iSiH~~~~yP~tg~~~~~~~~NvPL~~g~~d~~yl 253 (339)
+|..--++.+.+ .|+.+++++-.|...-.-+.++...-|.|+. +-+|-. + ++ . .. ++.+
T Consensus 15 ~d~~~vl~~a~~-~gv~~~i~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~--~-------------~~--~-~~-~~~~ 74 (258)
T PRK10425 15 KDRDDVVARAFA-AGVNGMLITGTNLRESQQAQKLARQYPSCWSTAGVHPH--D-------------SS--Q-WQ-AATE 74 (258)
T ss_pred ccHHHHHHHHHH-CCCCEEEEeCCCHHHHHHHHHHHHhCCCEEEEEEeCcC--c-------------cc--c-CC-HHHH
Confidence 566555666654 4789999999998888888888877777653 566732 0 00 0 01 2223
Q ss_pred HHHHHHHHHHHhhcCCCEEEEE-cCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEE
Q 019524 254 KKLDEALEVAGHTFDPELVIYN-AGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVM 316 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvs-aG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~ 316 (339)
..+.+. ++ +|+++-|- .|.|-++... . .+--.+.-+.-+++|++++.|+++
T Consensus 75 ~~l~~~----~~--~~~~vaIGEiGLDy~~~~~--~----~~~Q~~vF~~ql~lA~~~~~Pv~i 126 (258)
T PRK10425 75 EAIIEL----AA--QPEVVAIGECGLDFNRNFS--T----PEEQERAFVAQLAIAAELNMPVFM 126 (258)
T ss_pred HHHHHh----cc--CCCEEEEeeeeeccccCCC--C----HHHHHHHHHHHHHHHHHhCCCeEE
Confidence 333322 22 36776664 8888764321 1 122223445566788888888865
No 222
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=21.84 E-value=4.5e+02 Score=24.18 Aligned_cols=73 Identities=25% Similarity=0.222 Sum_probs=33.6
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCCCCCCccC-HHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 247 TTTNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDPLGMLKIS-PDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 247 ~~d~~yl~a~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dplg~~~lt-~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
.=+.+.+..+.+.+..+.++= ...||+ |+|.|...-.....-... ...+......+.+....+..|+|+.+
T Consensus 22 al~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 100 (256)
T TIGR02280 22 SFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAV 100 (256)
T ss_pred CCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 345667777777777663332 445554 566665421100000000 01111111223333345678998877
Q ss_pred CC
Q 019524 319 SG 320 (339)
Q Consensus 319 eG 320 (339)
.|
T Consensus 101 ~G 102 (256)
T TIGR02280 101 NG 102 (256)
T ss_pred CC
Confidence 55
No 223
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=21.76 E-value=1.9e+02 Score=25.83 Aligned_cols=59 Identities=24% Similarity=0.206 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhhc-CCCEEEEEcCCCCCCCCCCCCC-----------ccCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 019524 250 NEYLKKLDEALEVAGHTF-DPELVIYNAGTDILEGDPLGML-----------KISPDGIAARDEKTFRFARSRNIPIVML 317 (339)
Q Consensus 250 ~~yl~a~~~~l~p~~~~f-~PdlIvvsaG~D~~~~Dplg~~-----------~lt~~g~~~~~~~l~~~a~~~~~p~v~v 317 (339)
++....++++ ...+.+. +|++||| |+++.+ ....+.+.++...|.++|+++++.++++
T Consensus 97 ~~l~~~l~~l-~~~l~~~~~~~liVI---------DSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~t 166 (235)
T cd01123 97 DHQLQLLEEL-EAILIESSRIKLVIV---------DSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVIT 166 (235)
T ss_pred HHHHHHHHHH-HHHHhhcCCeeEEEE---------eCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEe
Confidence 3444555443 4455667 9999998 434322 1112345566777888888899988876
Q ss_pred e
Q 019524 318 T 318 (339)
Q Consensus 318 l 318 (339)
-
T Consensus 167 n 167 (235)
T cd01123 167 N 167 (235)
T ss_pred c
Confidence 4
No 224
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=21.69 E-value=2.5e+02 Score=28.36 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCC
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGD 284 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~D 284 (339)
..+.+.|..+.++++|++|+|..+. ....+|
T Consensus 71 ~~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGd 102 (435)
T cd01974 71 NNLIDGLKNAYAVYKPDMIAVSTTCMAEVIGD 102 (435)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHhhhhc
Confidence 4555666677788999987665543 444444
No 225
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=21.58 E-value=1.1e+02 Score=26.24 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=9.5
Q ss_pred CeEEEEeccCcC
Q 019524 191 SRVMIIDLDAHQ 202 (339)
Q Consensus 191 ~RV~IiD~DvHH 202 (339)
+||++||+|.--
T Consensus 28 ~~VlliD~D~~~ 39 (195)
T PF01656_consen 28 KKVLLIDLDPQA 39 (195)
T ss_dssp S-EEEEEESTTS
T ss_pred ccccccccCccc
Confidence 799999999854
No 226
>PRK07577 short chain dehydrogenase; Provisional
Probab=21.51 E-value=2.2e+02 Score=24.98 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=16.0
Q ss_pred HHHHHHHHhhcCCCEEEEEcCC
Q 019524 257 DEALEVAGHTFDPELVIYNAGT 278 (339)
Q Consensus 257 ~~~l~p~~~~f~PdlIvvsaG~ 278 (339)
++.+..+.+.+++|.||..+|.
T Consensus 57 ~~~~~~~~~~~~~d~vi~~ag~ 78 (234)
T PRK07577 57 AATLAQINEIHPVDAIVNNVGI 78 (234)
T ss_pred HHHHHHHHHhCCCcEEEECCCC
Confidence 3344445567789999999997
No 227
>PLN02825 amino-acid N-acetyltransferase
Probab=21.49 E-value=2.8e+02 Score=29.03 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCChhHHHHH
Q 019524 252 YLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLAL 330 (339)
Q Consensus 252 yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~~~~~a~ 330 (339)
|...|++.+ |.++.|+=..+||-.|=++..++ .|..+.+.+. +....|+++|+|.|||......+..
T Consensus 1 ~v~~fr~a~-pYI~~~rgktfVIk~gG~~l~~~----------~~~~l~~Dia-lL~~lGi~~VlVHGggpqI~~~l~~ 67 (515)
T PLN02825 1 FVRWFREAW-PYIQGHRGSTFVVVISGEVVAGP----------HLDNILQDIS-LLHGLGIKFVLVPGTHVQIDKLLAE 67 (515)
T ss_pred ChhHHHhhh-HHHHHHCCCEEEEEECchhhcCc----------hHHHHHHHHH-HHHHCCCCEEEEcCCCHHHHHHHHH
Confidence 456677764 67799999999999887666532 2444433332 2245699999999999977655543
No 228
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=21.47 E-value=2.1e+02 Score=26.62 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhh-cCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 019524 253 LKKLDEALEVAGHT-FDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (339)
Q Consensus 253 l~a~~~~l~p~~~~-f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vle 319 (339)
...|++++..+.+. -+||+||++ | |... .-+.+.|..+.+ ..++.+.|+.++.|
T Consensus 39 ~~~l~~~i~~i~~~~~~~D~vvit-G-Dl~~-------~~~~~~~~~~~~----~l~~l~~Pv~~v~G 93 (275)
T PRK11148 39 WESYQAVLEAIRAQQHEFDLIVAT-G-DLAQ-------DHSSEAYQHFAE----GIAPLRKPCVWLPG 93 (275)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEC-C-CCCC-------CCCHHHHHHHHH----HHhhcCCcEEEeCC
Confidence 45566666666433 479998763 2 2221 113566765444 33555788765554
No 229
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=21.38 E-value=1.8e+02 Score=29.98 Aligned_cols=45 Identities=29% Similarity=0.379 Sum_probs=26.3
Q ss_pred HHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCC
Q 019524 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPI 322 (339)
Q Consensus 262 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY 322 (339)
..+++++||+|.+|+ +|.. + .....+.+.+++..-.+.+|+||..
T Consensus 57 ~~l~~~~pdvVgis~--------------~t~~-~-~~a~~~~~~~k~~~P~~~iV~GG~h 101 (497)
T TIGR02026 57 ERLRAHCPDLVLITA--------------ITPA-I-YIACETLKFARERLPNAIIVLGGIH 101 (497)
T ss_pred HHHHhcCcCEEEEec--------------Cccc-H-HHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 345789999999974 1221 2 2233455666665444566666665
No 230
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=21.30 E-value=3.7e+02 Score=24.70 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCC--EEEE-------EcCCCCCCC-CC-CCCCccCHHHHHHHHHHHHHHHhhCCCCEE
Q 019524 247 TTTNEYLKKLDEALEVAGHTFDPE--LVIY-------NAGTDILEG-DP-LGMLKISPDGIAARDEKTFRFARSRNIPIV 315 (339)
Q Consensus 247 ~~d~~yl~a~~~~l~p~~~~f~Pd--lIvv-------saG~D~~~~-Dp-lg~~~lt~~g~~~~~~~l~~~a~~~~~p~v 315 (339)
.=+.+.+..+.+++..+-. +|+ .||+ ++|.|...- ++ .+. ..+......+++....+..|+|
T Consensus 29 al~~~~~~~L~~~l~~~~~--d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~kPvI 101 (251)
T PRK06023 29 AITRAMYATMAKALKAADA--DDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGG-----TSFGSEILDFLIALAEAEKPIV 101 (251)
T ss_pred CCCHHHHHHHHHHHHHHhc--CCCceEEEEECCCCCeecCcCHHHHhhccccc-----hhhHHHHHHHHHHHHhCCCCEE
Confidence 3356677778777765533 455 3554 566664321 10 010 1111111223333345678999
Q ss_pred EEeCC
Q 019524 316 MLTSG 320 (339)
Q Consensus 316 ~vleG 320 (339)
+...|
T Consensus 102 Aav~G 106 (251)
T PRK06023 102 SGVDG 106 (251)
T ss_pred EEeCC
Confidence 87765
No 231
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=21.26 E-value=4.8e+02 Score=21.63 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=38.8
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEE
Q 019524 247 TTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVM 316 (339)
Q Consensus 247 ~~d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~ 316 (339)
.+.++|...+++++..+ ++.++.+|++..-.-. .....-..+..+.+.++|++.+.+++-
T Consensus 81 ~~~~~~~~~l~~li~~~-~~~~~~vil~~~~~~~---------~~~~~~~~~~~~~~~~~a~~~~~~~~d 140 (177)
T cd01822 81 IPPDQTRANLRQMIETA-QARGAPVLLVGMQAPP---------NYGPRYTRRFAAIYPELAEEYGVPLVP 140 (177)
T ss_pred CCHHHHHHHHHHHHHHH-HHCCCeEEEEecCCCC---------ccchHHHHHHHHHHHHHHHHcCCcEec
Confidence 34678999999888876 4448888887642111 112233455666777888888887664
No 232
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=21.23 E-value=4.1e+02 Score=23.98 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHH
Q 019524 248 TTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFA 307 (339)
Q Consensus 248 ~d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a 307 (339)
+.+-|+.-. ...+...++||.|++ .+|=+++=.++.+.|.+..++..++.
T Consensus 27 ~~D~YL~~~---~~~~~~~l~Pd~V~f-------LGDLfd~~w~~D~ef~~~~~RF~~if 76 (193)
T cd08164 27 GNDYFLGHI---VSMMQFWLKPDAVVV-------LGDLFSSQWIDDEEFAKRADRYRRRF 76 (193)
T ss_pred hhHHHHHHH---HHHHHHhcCCCEEEE-------eccccCCCcccHHHHHHHHHHHHHHh
Confidence 355665533 233446789999986 35655544678888988888887755
No 233
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=21.19 E-value=4.8e+02 Score=24.08 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=16.3
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCC--EEEE
Q 019524 246 GTTTNEYLKKLDEALEVAGHTFDPE--LVIY 274 (339)
Q Consensus 246 g~~d~~yl~a~~~~l~p~~~~f~Pd--lIvv 274 (339)
+.=+.+.+..+.+.+..+.+ +|+ .||+
T Consensus 30 Nal~~~~~~~l~~al~~~~~--d~~vr~vvl 58 (261)
T PRK08138 30 NALNMEVRQQLAEHFTELSE--DPDIRAIVL 58 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhh--CCCeeEEEE
Confidence 34466777777777776533 455 4554
No 234
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.13 E-value=4.4e+02 Score=26.48 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHhh-CCCCEEEEeCCCCCh
Q 019524 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS-RNIPIVMLTSGPITS 324 (339)
Q Consensus 254 ~a~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~-~~~p~v~vleGGY~~ 324 (339)
+.+.+.|..+.++|+|++|+|..+. =...+|. ...+.+.+.+-..+ .+.|++.+--+||..
T Consensus 67 ~~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdD----------i~~v~~~~~~~~p~~~~~~vi~v~t~gf~g 129 (417)
T cd01966 67 ENLEEALDTLAERAKPKVIGLLSTGLTETRGED----------IAGALKQFRAEHPELADVPVVYVSTPDFEG 129 (417)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcccccccC----------HHHHHHHHHhhccccCCCeEEEecCCCCCC
Confidence 3455566667788999988776654 2333332 22222222111011 378999999999853
No 235
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.10 E-value=1.8e+02 Score=27.99 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=26.4
Q ss_pred HHHHHHHHHHc----CCCeEEEEeccCcCCcchhhhhc
Q 019524 178 SLCIHYAFVQL----NISRVMIIDLDAHQGNGHEKDFS 211 (339)
Q Consensus 178 AIAa~~l~~~~----~~~RV~IiD~DvHHGnGTq~if~ 211 (339)
...++|+.++. +.+||++|=-|--.|.+..+.|.
T Consensus 124 ~~l~~~~~~~~~~~~~~~kvaiv~~~~~~g~~~~~~~~ 161 (351)
T cd06334 124 RALVQYIAEQEGGKLKGKKIALVYHDSPFGKEPIEALK 161 (351)
T ss_pred HHHHHHHHHhcccCCCCCeEEEEeCCCccchhhHHHHH
Confidence 45567777766 58999999888888888877763
No 236
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=20.94 E-value=4.6e+02 Score=23.58 Aligned_cols=55 Identities=11% Similarity=0.134 Sum_probs=30.6
Q ss_pred HHhhc-CCCEEEEEcCCCCCCCCCCC-------------CCccCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 019524 263 AGHTF-DPELVIYNAGTDILEGDPLG-------------MLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (339)
Q Consensus 263 ~~~~f-~PdlIvvsaG~D~~~~Dplg-------------~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vl 318 (339)
+.++| ++|.+|..+|+-.... |+. .+++...+...+.+.+....++.+++++.+.
T Consensus 74 ~~~~~g~id~li~~ag~~~~~~-~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~s 142 (263)
T PRK06200 74 TVDAFGKLDCFVGNAGIWDYNT-SLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTL 142 (263)
T ss_pred HHHhcCCCCEEEECCCCcccCC-CcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEEC
Confidence 33444 6899999999732211 111 1334445555666666655444456666554
No 237
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=20.91 E-value=4.3e+02 Score=24.61 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCEEEE
Q 019524 248 TTNEYLKKLDEALEVAGHTFDPELVIY 274 (339)
Q Consensus 248 ~d~~yl~a~~~~l~p~~~~f~PdlIvv 274 (339)
=+.+.+..+.+++..+-.+-....||+
T Consensus 36 l~~~~~~~l~~~l~~~~~d~~vr~vVl 62 (268)
T PRK07327 36 ADARMHRELADIWRDVDRDPDVRVVLI 62 (268)
T ss_pred CCHHHHHHHHHHHHHhhhCCCceEEEE
Confidence 356677777777776633222334554
No 238
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=20.82 E-value=2.3e+02 Score=27.18 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEcCC-------CCCCCC-----------C-CCCCccCHHHHHHHHHHHHHHHhhC
Q 019524 250 NEYLKKLDEALEVAGHTFDPELVIYNAGT-------DILEGD-----------P-LGMLKISPDGIAARDEKTFRFARSR 310 (339)
Q Consensus 250 ~~yl~a~~~~l~p~~~~f~PdlIvvsaG~-------D~~~~D-----------p-lg~~~lt~~g~~~~~~~l~~~a~~~ 310 (339)
+....+++++-..+ ++++||.|||-.-- |..-.. | +..++....+=.++++.|.+.+.+.
T Consensus 33 ~~~~~a~~~~~~~i-~~~~Pd~IVViSpHw~~~~~~~~~~~p~~~G~~~~~~~p~~~~~~~~~~gd~eLA~~i~~~~~~~ 111 (294)
T cd07372 33 EQLRWAYERARESI-EALKPDVLLVHSPHWITSVGHHFLGVPELSGRSVDPIFPNLFRYDFSMNVDVELAEACCEEGRKA 111 (294)
T ss_pred HHHHHHHHHHHHHH-HHcCCCEEEEECCCcccccCeeeecCCcccccccccccccceeeccCCCCCHHHHHHHHHHHHHC
Q ss_pred CCCEEEE
Q 019524 311 NIPIVML 317 (339)
Q Consensus 311 ~~p~v~v 317 (339)
++++..+
T Consensus 112 Gi~~~~~ 118 (294)
T cd07372 112 GLVTKMM 118 (294)
T ss_pred CCCeeec
No 239
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=20.79 E-value=75 Score=27.45 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEE
Q 019524 249 TNEYLKKLDEALEVAGHTFDPELVIYN 275 (339)
Q Consensus 249 d~~yl~a~~~~l~p~~~~f~PdlIvvs 275 (339)
|......+.+.|..++++++|++|+|+
T Consensus 44 ~~~~~~~~~~~l~~~i~~~kP~vI~v~ 70 (150)
T PF14639_consen 44 DRERKEEDMERLKKFIEKHKPDVIAVG 70 (150)
T ss_dssp -SS-SHHHHHHHHHHHHHH--SEEEE-
T ss_pred chHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence 444444555556667789999999993
No 240
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=20.67 E-value=1.2e+02 Score=28.67 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=12.3
Q ss_pred CeEEEEeccCcCCc
Q 019524 191 SRVMIIDLDAHQGN 204 (339)
Q Consensus 191 ~RV~IiD~DvHHGn 204 (339)
+||++||.|.+...
T Consensus 87 ~rVlliDaD~~gps 100 (265)
T COG0489 87 KRVLLLDADLRGPS 100 (265)
T ss_pred CcEEEEeCcCCCCc
Confidence 79999999998753
No 241
>PRK06182 short chain dehydrogenase; Validated
Probab=20.63 E-value=2.6e+02 Score=25.48 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=28.8
Q ss_pred cCCCEEEEEcCCCCCCC-------CCCCCCccCHHHHHHHHHHHHHHHhhCC-CCEEEEe
Q 019524 267 FDPELVIYNAGTDILEG-------DPLGMLKISPDGIAARDEKTFRFARSRN-IPIVMLT 318 (339)
Q Consensus 267 f~PdlIvvsaG~D~~~~-------Dplg~~~lt~~g~~~~~~~l~~~a~~~~-~p~v~vl 318 (339)
.++|.||..+|+-.... |+...+.+...+...+++.++...++.+ ++++.+-
T Consensus 73 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~is 132 (273)
T PRK06182 73 GRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINIS 132 (273)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 47899999999743211 1111223333445555666666665554 5666554
No 242
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=20.51 E-value=2.1e+02 Score=28.10 Aligned_cols=26 Identities=15% Similarity=0.094 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEE
Q 019524 250 NEYLKKLDEALEVAGHTFDPELVIYN 275 (339)
Q Consensus 250 ~~yl~a~~~~l~p~~~~f~PdlIvvs 275 (339)
.+-+...-.-+..++++++||+|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~Pd~vlv~ 100 (365)
T TIGR03568 75 AKSMGLTIIGFSDAFERLKPDLVVVL 100 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 34444444556778899999999883
No 243
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=20.40 E-value=3.2e+02 Score=25.49 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=13.6
Q ss_pred HHHHHHHHhhcCCCEEEEE
Q 019524 257 DEALEVAGHTFDPELVIYN 275 (339)
Q Consensus 257 ~~~l~p~~~~f~PdlIvvs 275 (339)
++....+.+..+||+||+.
T Consensus 34 r~~~~~~~~~l~PD~vv~l 52 (257)
T cd08163 34 RRNWRYMQKQLKPDSTIFL 52 (257)
T ss_pred HHHHHHHHHhcCCCEEEEe
Confidence 4455556677899999973
No 244
>PLN02160 thiosulfate sulfurtransferase
Probab=20.31 E-value=2.3e+02 Score=23.58 Aligned_cols=19 Identities=11% Similarity=-0.114 Sum_probs=13.7
Q ss_pred HhhCCCCEEEEeCCCCChh
Q 019524 307 ARSRNIPIVMLTSGPITSE 325 (339)
Q Consensus 307 a~~~~~p~v~vleGGY~~~ 325 (339)
..+.|.+-+..++||+..+
T Consensus 101 L~~~G~~~v~~l~GG~~~W 119 (136)
T PLN02160 101 LVAAGYKKVRNKGGGYLAW 119 (136)
T ss_pred HHHcCCCCeeecCCcHHHH
Confidence 3445766688899999664
No 245
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=20.23 E-value=2.6e+02 Score=27.13 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEe--CCCC--------ChhHHHHHHHHHh
Q 019524 292 SPDGIAARDEKTFRFARSRNIPIVMLT--SGPI--------TSEKVLALWSIRF 335 (339)
Q Consensus 292 t~~g~~~~~~~l~~~a~~~~~p~v~vl--eGGY--------~~~~~~a~~~~~~ 335 (339)
.++||++.-+ ++++|++++.|++.+. -|-| .-+.++|.+...|
T Consensus 132 ~PeGyRKAlR-lm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em 184 (317)
T COG0825 132 RPEGYRKALR-LMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREM 184 (317)
T ss_pred CchHHHHHHH-HHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHH
Confidence 4788888654 7788888888887654 5666 1234566655544
Done!