RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019524
(339 letters)
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 129 bits (324), Expect = 4e-35
Identities = 75/304 (24%), Positives = 126/304 (41%), Gaps = 27/304 (8%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + + + + + + + IV+P AS E+
Sbjct: 2 VPVY----IYSPEY----VSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEE 53
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK-- 145
+ H+++YL+ LQ S + L +C + G TI AA+
Sbjct: 54 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCL 113
Query: 146 LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNG 205
+ AIN GG+HH DE GFC D L I + R++ +DLD H G+G
Sbjct: 114 IDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDG 171
Query: 206 HEKDFSSDSRV--YILDMFNPGIYPRDYEA-------RRFIDQKVEVVSGTTTNEYLKKL 256
E FS S+V L F+PG +P + R+ V + G +Y +
Sbjct: 172 VEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQIC 231
Query: 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVM 316
+ L+ F+P+ V+ G D + GDP+ ++P GI ++ + ++
Sbjct: 232 ESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCL----KYILQWQLATLI 287
Query: 317 LTSG 320
L G
Sbjct: 288 LGGG 291
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 127 bits (319), Expect = 2e-34
Identities = 69/317 (21%), Positives = 122/317 (38%), Gaps = 24/317 (7%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K+ LI + DY HP + + +F + +D+ +++ A+KE+LL+
Sbjct: 2 KVKLIGTLDYGKYRYPKN--HPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLF 59
Query: 94 HSESYLKSLQSSPNVSIIIEVPPVALFP---NCLVQRKVLYPFRKQVGGTILAAKLAKER 150
H+E Y+ +L + + + V + G T+ A + +
Sbjct: 60 HTEDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKG 119
Query: 151 GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDF 210
A N GG HH GFC + ++ I Y + R++ IDLDAH +G ++ F
Sbjct: 120 NVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLR-KKGFKRILYIDLDAHHCDGVQEAF 178
Query: 211 SSDSRVYILDMFNPGIYPRDYE----------ARRFIDQKVEVVSGTTTNEYLKKLDEAL 260
+V++L + Y +E + + + + G NE+L L+++L
Sbjct: 179 YDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSL 238
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320
E+ F+PE+ + GTD L D L +S F R V L G
Sbjct: 239 EIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKA----FNIVREVFGEGVYLGGG 294
Query: 321 ----PITSEKVLALWSI 333
+ +W
Sbjct: 295 GYHPYALARAWTLIWCE 311
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 116 bits (290), Expect = 3e-30
Identities = 57/323 (17%), Positives = 100/323 (30%), Gaps = 42/323 (13%)
Query: 37 LIYSPDYD--ISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVH 94
LIY G HP + + I L G + + +AS E+L VH
Sbjct: 8 LIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVH 67
Query: 95 SESYLKSLQSSP-----------------NVSIIIEVPPVALFPNCLVQRKVLYPFRKQV 137
SE ++ ++P + +++ V + + + +
Sbjct: 68 SERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWA 127
Query: 138 GGTILAAKLAKERG----WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRV 193
G++ V HH GFC + +++ Q S++
Sbjct: 128 AGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKI 187
Query: 194 MIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYE--------------ARRFIDQ 239
+I+D D H GNG ++ F D V + + +
Sbjct: 188 LIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAW 247
Query: 240 KVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGD--PLGMLKISPDGIA 297
+ EYL + F P+LV+ +AG D EG PLG +S
Sbjct: 248 AGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFG 307
Query: 298 ARDEKTFRFARSRNIPIVMLTSG 320
++ A +V+ G
Sbjct: 308 YMTQQLMNLA---GGAVVLALEG 327
>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 251
Score = 27.6 bits (61), Expect = 1.8
Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 7/47 (14%)
Query: 136 QVGG---TILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISL 179
+GG + A + G G + ++L
Sbjct: 174 DLGGIHNIVDAVLYCNKHGMEAYQG----GTCNETEISARTCVHVAL 216
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 239
Score = 27.0 bits (59), Expect = 2.7
Identities = 25/130 (19%), Positives = 39/130 (30%), Gaps = 12/130 (9%)
Query: 155 NVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDS 214
N G +++ G S Y LN V+ + + +
Sbjct: 42 NAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITN 101
Query: 215 RVYI---LDMFNPGIYPRD---YEARRFIDQKV-EVVSGTTTNEYLKKLDEALEVAGHTF 267
+ +D+ P A + V EV +G T E DE L G
Sbjct: 102 EELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPE----ADEILFEKGILQ 157
Query: 268 DPELVIYNAG 277
P+ + NAG
Sbjct: 158 IPDFLC-NAG 166
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Haemophilus
influenzae [TaxId: 727]}
Length = 147
Score = 26.3 bits (57), Expect = 3.7
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 9/79 (11%)
Query: 41 PDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLK 100
DI G ++++P + + + +K +K+ + +V S +
Sbjct: 74 SSLDIYVDGADEINPQK-----MMIKGGGAALTREKIVA----ALAKKFICIVDSSKQVD 124
Query: 101 SLQSSPNVSIIIEVPPVAL 119
L + ++I P
Sbjct: 125 VLFALRGADVVIVGTPEGA 143
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Archaeon
Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 219
Score = 26.5 bits (58), Expect = 4.3
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 291 ISPDGIAARDEKTFRFARSRNIPIV 315
+ DG A +T R+A N+ +
Sbjct: 186 MGDDGNAMSKNETKRYAEKHNLIYL 210
>d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium
tetanomorphum [TaxId: 1553]}
Length = 253
Score = 26.5 bits (58), Expect = 4.5
Identities = 6/43 (13%), Positives = 9/43 (20%), Gaps = 4/43 (9%)
Query: 137 VGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISL 179
V A K G G + +I +
Sbjct: 178 VNNIADAIMYCKANGMGAYCG----GTCNETNRSAEVTTNIGM 216
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Candida albicans [TaxId:
5476]}
Length = 202
Score = 25.7 bits (56), Expect = 6.4
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 293 PDGIAARDEKTFRFARSRNIPIV 315
DG+ R + +F + I I+
Sbjct: 169 EDGLMMRLDDCIQFGKKHGIKII 191
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus
halodurans [TaxId: 86665]}
Length = 118
Score = 25.2 bits (55), Expect = 6.7
Identities = 6/72 (8%), Positives = 19/72 (26%), Gaps = 15/72 (20%)
Query: 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318
+ +L+I D + + +++ +++LT
Sbjct: 38 FFQHRSQLSTCDLLI----VSDQLVDLSIFSLL----------DIVK-EQTKQPSVLILT 82
Query: 319 SGPITSEKVLAL 330
+G +
Sbjct: 83 TGRHELIESSEH 94
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 25.9 bits (56), Expect = 9.4
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 32 IFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCI---VEPLEASKE 88
+ KL I+ +DI F +E LSS + +K + L S
Sbjct: 51 VCKLLFIFLLGHDIDFGHME------------AVNLLSSNRYTEKQIGYLFISVLVNSNS 98
Query: 89 DLLVVHSESYLKSLQSSPNVSII 111
+L+ + + + L S N + +
Sbjct: 99 ELIRLINNAIKNDLA-SRNPTFM 120
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Escherichia coli [TaxId:
562]}
Length = 209
Score = 25.3 bits (55), Expect = 10.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 291 ISPDGIAARDEKTFRFARSRNIPIV 315
+ DG AR + FA N+ +V
Sbjct: 172 TNDDGTMARAPECIEFANKHNMALV 196
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.414
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,319,817
Number of extensions: 64403
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 12
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)