BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019526
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 277 bits (709), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 147/345 (42%), Positives = 205/345 (59%), Gaps = 16/345 (4%)
Query: 1 MAADHIVDAHMIDAKGRFLTRESMGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXX 60
+AAD+I+DAH+++ G+ L R+SMGEDLFWA WKIKL
Sbjct: 172 LAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIF 231
Query: 61 XXXRTLE-QNATRLLHKWQYIADRVHEDLFISPFLYREN---------STMVCLFTSLFL 110
+ +E +L +KWQ IA + +DL + +N +T+ F+S+F
Sbjct: 232 SVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFH 291
Query: 111 GGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESIN--ADVLINERFVKR 168
GGVD L+ LM +SFPELG+ K DC+E S+I++ ++ G + N ++L++ K+
Sbjct: 292 GGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKK 351
Query: 169 F-FIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRA 227
F K D+V PIP A+ + YEED G+ V +PYGG M EISES IPFPHRA
Sbjct: 352 TAFSIKLDYVKKPIPETAMVKILEKLYEEDVGA-GMYVLYPYGGIMEEISESAIPFPHRA 410
Query: 228 GNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKL 287
G +Y L Y A W+ D ++H+N VR ++N+ TPYV++NPR AY+N RDLD+G N
Sbjct: 411 GIMYELWYTASWEKQEDN--EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHA 468
Query: 288 GHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPF 332
+ +A +WG+KYF NF RLV+VKT VDP +FFRNEQSIPP
Sbjct: 469 SPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 184/332 (55%), Gaps = 12/332 (3%)
Query: 2 AADHIVDAHMIDAKGRFLTRESMGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXXX 61
AAD+++DA ++DA+GR L R++MGED FWA W++KL
Sbjct: 176 AADNVIDAKVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQ 235
Query: 62 XXRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQ 121
+ +++ A L+ KWQ +A + +DL I + + +F +L+LG L+ LM
Sbjct: 236 VHKGIKEGAIDLVTKWQTVAPALPDDLMIRIMAMGQGA----MFEALYLGTCKDLVLLMT 291
Query: 122 QSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPI 181
FPELG+ C+EM++IES+ Y+ + ++ D+L +K F K+D+V PI
Sbjct: 292 ARFPELGMNATHCKEMTWIESVPYIP-MGPKGTVR-DLLNRTSNIKAFGKYKSDYVLEPI 349
Query: 182 PVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQD 241
P E + + G+++ PYGG ++ + ES PFP R+G ++ + Y W
Sbjct: 350 PKSDWEKIFTWLVKPG---AGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYW-- 404
Query: 242 ATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSV-QEASVWGK 300
+ A R ++++MTPYV+KNPR AY+N RDLD+G N +G+ S VWG+
Sbjct: 405 FGEGAAALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGE 464
Query: 301 KYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPF 332
KYFK NF RL + K +DPED+FRNEQSIPP
Sbjct: 465 KYFKGNFERLARTKGKIDPEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 176/333 (52%), Gaps = 10/333 (3%)
Query: 1 MAADHIVDAHMIDAKGRFLTRESMGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXX 60
+AA++++D ++DA G+ ++SMG+D FWA W++KL
Sbjct: 173 IAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIF 232
Query: 61 XXXRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLM 120
+T+ + A +++KWQ +A ++ DL I +T F +++LG L PLM
Sbjct: 233 KISKTVSEGAVDIINKWQVVAPQLPADLMIRIIAQGPKAT----FEAMYLGTCKTLTPLM 288
Query: 121 QQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVP 180
FPELG+ C EMS+I+SI ++ R+++ D+L + K F K+D+V P
Sbjct: 289 SSKFPELGMNPSHCNEMSWIQSIPFVH-LGHRDALEDDLLNRQNSFKPFAEYKSDYVYQP 347
Query: 181 IPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQ 240
P E + + + G+++F PYG +S ES PFPHR G ++ + Y W
Sbjct: 348 FPKTVWEQILNTWLVKP--GAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYW- 404
Query: 241 DATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSV-QEASVWG 299
A L+ + ++NYM PYV+KNPR AY N RD+D+G N + S VWG
Sbjct: 405 -FAPGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWG 463
Query: 300 KKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPF 332
+KYFK NF RL K VDP D+FRNEQSIPP
Sbjct: 464 QKYFKGNFERLAITKGKVDPTDYFRNEQSIPPL 496
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 172/336 (51%), Gaps = 11/336 (3%)
Query: 1 MAADHIVDAHMIDAKGRFLTRESMGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXX 60
+AAD++VDA +IDA G L R++MGED+FWA WKIKL
Sbjct: 164 LAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVF 223
Query: 61 XXXRTLE-QNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPL 119
+ + AT LLHKWQ++A+ + ED +S + + G
Sbjct: 224 RVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKST 283
Query: 120 MQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTV 179
FPELGL +ED EMS+ ES YL G + +N L +F +R F K D
Sbjct: 284 FDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKE 340
Query: 180 PIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEW 239
P+P +A G + +E G + +GG+MS+IS PFPHR+G + Y W
Sbjct: 341 PLPSKAFYGLLERLSKE---PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAW 397
Query: 240 QDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIG----TNNKLGHTSVQEA 295
+ + L+ + K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ +
Sbjct: 398 NQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEIS 457
Query: 296 SVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPP 331
WG+ YF +N+ RL++ KT++DP + F + QSIPP
Sbjct: 458 RSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 493
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 172/336 (51%), Gaps = 11/336 (3%)
Query: 1 MAADHIVDAHMIDAKGRFLTRESMGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXX 60
+AAD++VDA +IDA G L R++MGED+FWA WKIKL
Sbjct: 170 LAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVF 229
Query: 61 XXXRTLE-QNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPL 119
+ + AT LLHKWQ++A+ + ED +S + + G
Sbjct: 230 RVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKST 289
Query: 120 MQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTV 179
FPELGL +ED EMS+ ES YL G + +N L +F +R F K D
Sbjct: 290 FDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKE 346
Query: 180 PIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEW 239
P+P +A G + +E G + +GG+MS+IS PFPHR+G + Y W
Sbjct: 347 PLPSKAFYGLLERLSKE---PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAW 403
Query: 240 QDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIG----TNNKLGHTSVQEA 295
+ + L+ + K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ +
Sbjct: 404 NQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEIS 463
Query: 296 SVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPP 331
WG+ YF +N+ RL++ KT++DP + F + QSIPP
Sbjct: 464 RSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 499
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 172/336 (51%), Gaps = 11/336 (3%)
Query: 1 MAADHIVDAHMIDAKGRFLTRESMGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXX 60
+AAD++VDA +IDA G L R++MGED+FWA WKIKL
Sbjct: 170 LAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVF 229
Query: 61 XXXRTLE-QNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPL 119
+ + AT LLHKWQ++A+ + ED +S + + G
Sbjct: 230 RVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKST 289
Query: 120 MQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTV 179
FPELGL +ED EMS+ ES YL G + +N L +F +R F K D
Sbjct: 290 FDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKE 346
Query: 180 PIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEW 239
P+P +A G + +E G + +GG+MS+IS PFPHR+G + Y W
Sbjct: 347 PLPSKAFYGLLERLSKE---PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAW 403
Query: 240 QDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIG----TNNKLGHTSVQEA 295
+ + L+ + K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ +
Sbjct: 404 NQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEIS 463
Query: 296 SVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPP 331
WG+ YF +N+ RL++ KT++DP + F + QSIPP
Sbjct: 464 RSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 499
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 201 bits (511), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 172/336 (51%), Gaps = 11/336 (3%)
Query: 1 MAADHIVDAHMIDAKGRFLTRESMGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXX 60
+AAD++VDA +IDA G L R++MGED+FWA WKIKL
Sbjct: 164 LAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVF 223
Query: 61 XXXRTLE-QNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPL 119
+ + AT LLHKWQ++A+ + ED +S + + G
Sbjct: 224 RVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKST 283
Query: 120 MQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTV 179
FPELGL +ED EMS+ ES YL G + +N L +F +R F K D
Sbjct: 284 FDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKE 340
Query: 180 PIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEW 239
P+P +A G + +E G + +GG+MS+IS PFPHR+G + Y W
Sbjct: 341 PLPSKAFYGLLERLSKE---PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAW 397
Query: 240 QDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIG----TNNKLGHTSVQEA 295
+ + L+ + K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ +
Sbjct: 398 NQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEIS 457
Query: 296 SVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPP 331
WG+ YF +N+ RL++ KT++DP + F + QSIPP
Sbjct: 458 RSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 493
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 201 bits (511), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 172/336 (51%), Gaps = 11/336 (3%)
Query: 1 MAADHIVDAHMIDAKGRFLTRESMGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXX 60
+AAD++VDA +IDA G L R++MGED+FWA WKIKL
Sbjct: 164 LAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVF 223
Query: 61 XXXRTLE-QNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPL 119
+ + AT LLHKWQ++A+ + ED +S + + G
Sbjct: 224 RVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKST 283
Query: 120 MQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTV 179
FPELGL +ED EMS+ ES YL G + +N L +F +R F K D
Sbjct: 284 FDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKE 340
Query: 180 PIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEW 239
P+P +A G + +E G + +GG+MS+IS PFPHR+G + Y W
Sbjct: 341 PLPSKAFYGLLERLSKE---PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAW 397
Query: 240 QDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIG----TNNKLGHTSVQEA 295
+ + L+ + K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ +
Sbjct: 398 NQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEIS 457
Query: 296 SVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPP 331
WG+ YF +N+ RL++ KT++DP + F + QSIPP
Sbjct: 458 RSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 493
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 201 bits (511), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 172/336 (51%), Gaps = 11/336 (3%)
Query: 1 MAADHIVDAHMIDAKGRFLTRESMGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXX 60
+AAD++VDA +IDA G L R++MGED+FWA WKIKL
Sbjct: 167 LAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVF 226
Query: 61 XXXRTLE-QNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPL 119
+ + AT LLHKWQ++A+ + ED +S + + G
Sbjct: 227 RVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKST 286
Query: 120 MQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTV 179
FPELGL +ED EMS+ ES YL G + +N L +F +R F K D
Sbjct: 287 FDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKE 343
Query: 180 PIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEW 239
P+P +A G + +E G + +GG+MS+IS PFPHR+G + Y W
Sbjct: 344 PLPSKAFYGLLERLSKE---PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAW 400
Query: 240 QDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIG----TNNKLGHTSVQEA 295
+ + L+ + K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ +
Sbjct: 401 NQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEIS 460
Query: 296 SVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPP 331
WG+ YF +N+ RL++ KT++DP + F + QSIPP
Sbjct: 461 RSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 496
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 201 bits (511), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/336 (33%), Positives = 173/336 (51%), Gaps = 11/336 (3%)
Query: 1 MAADHIVDAHMIDAKGRFLTRESMGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXX 60
+AAD++VDA +IDA G L R++MGED+FWA WKIKL
Sbjct: 189 LAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVF 248
Query: 61 XXXRTLE-QNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPL 119
+ + AT LLHKWQ++A+ + ED +S + + G
Sbjct: 249 RVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKST 308
Query: 120 MQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTV 179
FPELGL +ED EMS+ ES YL G + +N L +F +R F K D
Sbjct: 309 FDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKE 365
Query: 180 PIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEW 239
P+P +A G + +E P G + +GG+MS+IS PFPHR+G + Y W
Sbjct: 366 PLPSKAFYGLLERLSKE-PN--GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAW 422
Query: 240 QDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIG----TNNKLGHTSVQEA 295
+ + L+ + K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ +
Sbjct: 423 NQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEIS 482
Query: 296 SVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPP 331
WG+ YF +N+ RL++ KT++DP + F + QSIPP
Sbjct: 483 RSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 518
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 14/152 (9%)
Query: 186 LEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDE 245
++ Y+ D YG + YGGK++ + + P R I + Y W + +E
Sbjct: 380 IQAVYENMTHMDGIDYGAVWLIGYGGKVNTVDPAATALPQRDA-ILKVNYITGWANPGNE 438
Query: 246 AYQRHLNMVRKLFNYM------TPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWG 299
A +HL VRKL+ + P AYIN D D+ + L + V W
Sbjct: 439 A--KHLTWVRKLYADVYAETGGVPVPNDVSDGAYINYPDSDL-ADPGLNTSGVP----WH 491
Query: 300 KKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPP 331
Y+K N RL +VK DP + F + SI P
Sbjct: 492 DLYYKGNHPRLRKVKAAYDPRNHFHHALSIRP 523
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 16/142 (11%)
Query: 197 DPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQD-ATDEAYQRHLNMVR 255
D + +G + + YGGK++ + E+ R +I + A W D A D+A +L +R
Sbjct: 387 DSQVWGEVSLYSYGGKVNSVPETATATAQR-DSIIKVWMSATWMDPAHDDA---NLAWIR 442
Query: 256 KLFNYM------TPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYR 309
+++ + P +IN D+D+ + + + V W Y+K N+ R
Sbjct: 443 EIYREIFATTGGVPVPDDRTEGTFINYPDVDL-VDERWNTSGVP----WYTLYYKGNYPR 497
Query: 310 LVQVKTMVDPEDFFRNEQSIPP 331
L +VK DP D FR+ S+ P
Sbjct: 498 LQKVKARWDPRDVFRHALSVRP 519
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 16/138 (11%)
Query: 202 GLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYM 261
G++ YGGK++ + R +I ++Y W+D + H+ +R+L+ +
Sbjct: 400 GVVALIAYGGKVNAVPADRTAVAQR-DSILKIVYVTTWEDPAQDPV--HVRWIRELYRDV 456
Query: 262 ------TPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKT 315
P AY+N D+D+ + + + V W + Y+K+ + RL VK
Sbjct: 457 YADTGGVPVPGGAADGAYVNYPDVDL-ADEEWNTSGVP----WSELYYKDAYPRLQAVKA 511
Query: 316 MVDPEDFFRNEQS--IPP 331
DP + FR+ S +PP
Sbjct: 512 RWDPRNVFRHALSVRVPP 529
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 14/143 (9%)
Query: 193 FYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLN 252
+ + P ++F YGG+++ S+ P R ++ +++ WQDA E + HL
Sbjct: 365 LHADHPGQASYVMFNSYGGEINRRGPSDAAVPQR-DSVVKSSWFSAWQDA--ELDELHLG 421
Query: 253 MVRKLFN------YMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNN 306
+R L+ P YIN D D+ L + W Y+K+N
Sbjct: 422 WLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADL-----LDPARNRSGEPWHHLYYKDN 476
Query: 307 FYRLVQVKTMVDPEDFFRNEQSI 329
+ RL K DP + F + SI
Sbjct: 477 YARLRSAKRAWDPLNTFHHSMSI 499
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 100/270 (37%), Gaps = 50/270 (18%)
Query: 71 TRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVD---RLLPLMQQSFPEL 127
T LL +AD ++ +F+ R S VC+ LGG+D R + ++ L
Sbjct: 228 TSLLDALNEMADHIYPSVFVGVDENRAPSVTVCVG---HLGGLDIAERDIARLRG----L 280
Query: 128 GLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALE 187
G T D + + +V L NA+V E + +I + + EA+
Sbjct: 281 GRTVSDSIAVRSYDEVVAL---------NAEVGSFEDGMSNLWIDREIAMPNARFAEAIA 331
Query: 188 GAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPF------PHRAGNIYTLLYYAEWQD 241
G D F E P G ++ +PF P R + +L AEW
Sbjct: 332 GNLDKFVSE-----------PASGGSVKLEIEGMPFGNPKRTPARHRDAMGVLALAEWSG 380
Query: 242 ATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKK 301
A +++ + R+L + +NN N+++ V E
Sbjct: 381 AA-PGSEKYPELARELDAALLRAGVTTSGFGLLNN-------NSEVTAEMVAEV------ 426
Query: 302 YFKNNFYRLVQVKTMVDPEDFFRNEQSIPP 331
Y + RL VK DPE+ FR+ +I P
Sbjct: 427 YKPEVYSRLAAVKREYDPENRFRHNYNIDP 456
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 300 KKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFNLMKDEL 339
K Y++ N +L +K DPED F N S+ P ++ +L
Sbjct: 447 KLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAYLEQKL 486
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 300 KKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFNLMKDEL 339
K Y++ N +L +K DPED F N S+ P ++ +L
Sbjct: 447 KLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAYLEQKL 486
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 198 PRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEW 239
P GL FFPY + + + ++I P AG + A W
Sbjct: 1 PHMSGLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASW 42
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 198 PRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEW 239
P GL FFPY + + + ++I P AG + A W
Sbjct: 1 PHMSGLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASW 42
>pdb|4GNR|A Chain A, 1.0 Angstrom Resolution Crystal Structure Of The
Branched-Chain Amino Acid Transporter Substrate Binding
Protein Livj From Streptococcus Pneumoniae Str. Canada
Mdr_19a In Complex With Isoleucine
Length = 353
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 124 FPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFI-GKADFVTVPIP 182
+ E G R M + IV DGF E + E+ +FI G + V V
Sbjct: 206 YNEAGKIVNQARGMGIDKPIVGGDGFNGEEFVQQATA--EKASNIYFISGFSTTVEVSAK 263
Query: 183 VEALEGAYDLFYEEDPRTYGLLVF 206
+A AY Y E+P T+ L +
Sbjct: 264 AKAFLDAYRAKYNEEPSTFAALAY 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,496,399
Number of Sequences: 62578
Number of extensions: 377287
Number of successful extensions: 799
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 21
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)