Query 019526
Match_columns 339
No_of_seqs 113 out of 1310
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 02:28:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019526.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019526hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 99.9 4.1E-21 8.8E-26 186.6 26.8 293 2-333 190-521 (525)
2 PF08031 BBE: Berberine and be 99.6 1.2E-16 2.7E-21 104.6 1.8 47 272-330 1-47 (47)
3 TIGR01679 bact_FAD_ox FAD-link 99.6 1.1E-13 2.4E-18 133.2 22.3 74 3-82 125-199 (419)
4 TIGR01678 FAD_lactone_ox sugar 99.4 1.5E-11 3.3E-16 118.7 20.6 74 2-81 130-204 (438)
5 PLN02805 D-lactate dehydrogena 99.4 6.4E-11 1.4E-15 117.2 23.1 63 2-65 251-319 (555)
6 KOG1231 Proteins containing th 99.4 1E-12 2.2E-17 121.8 8.1 52 3-55 188-240 (505)
7 TIGR01676 GLDHase galactonolac 99.2 1.9E-11 4.2E-16 119.3 9.1 74 2-81 177-251 (541)
8 PRK11282 glcE glycolate oxidas 99.2 3E-11 6.4E-16 113.0 8.3 55 2-57 113-173 (352)
9 TIGR01677 pln_FAD_oxido plant- 99.2 2.9E-11 6.2E-16 119.4 7.5 55 2-57 154-215 (557)
10 COG0277 GlcD FAD/FMN-containin 99.1 5.1E-09 1.1E-13 102.3 17.4 55 2-57 150-210 (459)
11 PRK11230 glycolate oxidase sub 99.0 1.8E-09 3.8E-14 106.2 10.1 57 2-59 175-236 (499)
12 PLN02465 L-galactono-1,4-lacto 98.9 3.7E-09 7.9E-14 104.3 9.4 73 3-81 213-286 (573)
13 TIGR00387 glcD glycolate oxida 98.8 1.9E-08 4.2E-13 97.0 9.3 62 2-64 117-184 (413)
14 PRK13905 murB UDP-N-acetylenol 98.1 2E-06 4.3E-11 79.4 4.3 51 2-54 142-193 (298)
15 PF09265 Cytokin-bind: Cytokin 97.6 0.00052 1.1E-08 62.0 10.7 194 103-330 78-281 (281)
16 KOG1262 FAD-binding protein DI 97.3 0.00038 8.2E-09 64.5 5.2 53 4-57 178-232 (543)
17 PRK13903 murB UDP-N-acetylenol 96.5 0.0026 5.7E-08 60.0 4.0 50 2-54 144-197 (363)
18 PRK14652 UDP-N-acetylenolpyruv 96.2 0.0066 1.4E-07 56.0 4.6 50 2-54 147-196 (302)
19 PRK12436 UDP-N-acetylenolpyruv 94.3 0.046 1E-06 50.6 3.9 49 2-53 147-197 (305)
20 KOG1232 Proteins containing th 93.8 0.3 6.5E-06 45.6 7.9 53 4-57 211-269 (511)
21 KOG4730 D-arabinono-1, 4-lacto 93.6 0.25 5.4E-06 47.2 7.3 56 4-60 164-224 (518)
22 KOG1233 Alkyl-dihydroxyacetone 93.2 0.17 3.6E-06 47.4 5.2 52 4-56 286-342 (613)
23 PF04030 ALO: D-arabinono-1,4- 92.6 0.66 1.4E-05 41.7 8.4 28 297-326 227-254 (259)
24 PF02913 FAD-oxidase_C: FAD li 90.3 0.63 1.4E-05 40.9 5.7 64 245-325 181-245 (248)
25 PRK11183 D-lactate dehydrogena 90.0 0.89 1.9E-05 45.1 6.8 50 27-78 239-290 (564)
26 PRK13906 murB UDP-N-acetylenol 86.6 0.8 1.7E-05 42.4 3.9 48 2-52 147-196 (307)
27 PRK14649 UDP-N-acetylenolpyruv 85.6 3.4 7.3E-05 38.1 7.4 49 2-53 134-192 (295)
28 PLN00107 FAD-dependent oxidore 81.2 0.95 2.1E-05 40.4 1.9 22 305-326 176-197 (257)
29 TIGR00179 murB UDP-N-acetyleno 81.0 2.1 4.5E-05 39.2 4.1 44 4-51 126-173 (284)
30 TIGR00387 glcD glycolate oxida 76.2 3.2 7E-05 40.1 4.1 29 297-325 382-411 (413)
31 PRK11230 glycolate oxidase sub 74.9 4.9 0.00011 40.0 5.0 34 298-331 440-474 (499)
32 TIGR01677 pln_FAD_oxido plant- 71.8 2.3 5E-05 42.8 1.9 22 305-326 482-503 (557)
33 PLN02465 L-galactono-1,4-lacto 63.5 77 0.0017 32.1 10.6 28 296-326 537-564 (573)
34 KOG4730 D-arabinono-1, 4-lacto 63.3 3.8 8.2E-05 39.5 1.4 21 305-325 485-505 (518)
35 PRK11282 glcE glycolate oxidas 59.6 6.1 0.00013 37.3 2.1 21 305-325 324-345 (352)
36 PRK14653 UDP-N-acetylenolpyruv 52.1 19 0.0004 33.2 3.9 48 3-54 144-194 (297)
37 COG0812 MurB UDP-N-acetylmuram 46.0 33 0.00071 31.5 4.4 48 3-53 134-183 (291)
38 PRK14650 UDP-N-acetylenolpyruv 43.9 33 0.00071 31.7 4.1 49 3-54 145-195 (302)
39 PRK00046 murB UDP-N-acetylenol 43.4 29 0.00063 32.6 3.8 48 3-53 135-188 (334)
40 TIGR01676 GLDHase galactonolac 42.7 14 0.00031 37.0 1.6 19 308-326 516-534 (541)
41 PRK01379 cyaY frataxin-like pr 42.4 19 0.00042 27.5 2.0 34 3-38 35-69 (103)
42 PF04753 Corona_NS2: Coronavir 38.3 20 0.00044 26.7 1.5 11 37-47 67-77 (109)
43 PRK14651 UDP-N-acetylenolpyruv 36.1 55 0.0012 29.8 4.3 48 3-53 123-170 (273)
44 COG5405 HslV ATP-dependent pro 35.8 14 0.0003 30.6 0.3 25 10-40 108-132 (178)
45 PF03392 OS-D: Insect pheromon 32.4 28 0.00061 26.2 1.5 15 310-324 78-92 (95)
46 PHA02087 hypothetical protein 32.3 55 0.0012 22.8 2.7 17 4-20 42-58 (83)
47 cd06397 PB1_UP1 Uncharacterize 29.5 1.2E+02 0.0025 22.1 4.1 43 4-49 38-80 (82)
48 PF14658 EF-hand_9: EF-hand do 28.3 43 0.00092 23.4 1.7 15 308-322 35-49 (66)
49 PF07484 Collar: Phage Tail Co 28.2 29 0.00063 23.4 0.8 20 12-32 16-35 (57)
50 TIGR03422 mito_frataxin fratax 25.3 65 0.0014 24.3 2.4 33 3-36 34-68 (97)
51 PF09129 Chol_subst-bind: Chol 25.2 40 0.00086 30.6 1.4 23 304-326 292-314 (321)
52 cd03521 Link_domain_KIAA0527_l 25.1 76 0.0016 23.6 2.6 36 13-56 53-88 (95)
53 PF03941 INCENP_ARK-bind: Inne 24.8 22 0.00047 23.9 -0.3 28 295-325 18-45 (57)
54 KOG1233 Alkyl-dihydroxyacetone 20.3 60 0.0013 30.9 1.6 21 306-326 590-610 (613)
55 TIGR03421 FeS_CyaY iron donor 20.1 74 0.0016 24.2 1.8 32 3-35 32-64 (102)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=99.89 E-value=4.1e-21 Score=186.55 Aligned_cols=293 Identities=13% Similarity=0.176 Sum_probs=156.3
Q ss_pred ccceEEEEEEEcCCCcEE-ecCCCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCeEEEEEEeccchHHHHHHHHHHHHH
Q 019526 2 AADHIVDAHMIDAKGRFL-TRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYI 80 (339)
Q Consensus 2 a~D~vl~~~VV~adG~iv-~~~~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (339)
.+|||++++|||+||+++ .++++|||||||+|||+ |+|||||++++|++|+|+........|.. ..++++....+
T Consensus 190 ~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~---~~~~~~d~~~l 265 (525)
T PLN02441 190 QISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSD---FSTFTRDQERL 265 (525)
T ss_pred HHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCC---HHHHHHHHHHH
Confidence 579999999999999999 68889999999999996 89999999999999999865443444432 22333333332
Q ss_pred hccC-C---CCceEEEEEe--------------e----------cCCc--eEEEEEEEEEcCcc-chhhHHhhhccCCCC
Q 019526 81 ADRV-H---EDLFISPFLY--------------R----------ENST--MVCLFTSLFLGGVD-RLLPLMQQSFPELGL 129 (339)
Q Consensus 81 ~~~~-~---~~~~~~~~~~--------------~----------~~~~--~~~~~~~~~~G~~~-~~~~~~~~~~~~l~~ 129 (339)
.... + +-+...++.. + ..+. ..+.+...|+.+.+ .....++.++..|+.
T Consensus 266 i~~~~~~~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~le~~~~~~~~~~~~~~~~~~~ll~~L~~ 345 (525)
T PLN02441 266 ISRPPENSFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSDGGVLYCLEVAKYYDEDTSDTVDQEVESLLKRLSF 345 (525)
T ss_pred HhcCCCCCcceEeEEEEeCCCCceeeeecccCCccccchhhccccCCceEEEEEEEEeeCCCCccchhhHHHHHHhhcCC
Confidence 2100 0 0111111100 0 0011 12333444544322 122223333333331
Q ss_pred C--ccceeeecHHHHHHhhhcccCccccccccccccccc-ccceeEeeccccCCCCHHHHHHHHHHHhc-CC-CCceeEE
Q 019526 130 T--KEDCREMSFIESIVYLDGFKIRESINADVLINERFV-KRFFIGKADFVTVPIPVEALEGAYDLFYE-ED-PRTYGLL 204 (339)
Q Consensus 130 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~~~~-~~-~~~~~~~ 204 (339)
. ...+.+++|.+.+..+.. . +..+...+. ...+.+-+.| ++...+.+..+.+.+ .. ......+
T Consensus 346 ~~~~~~~~d~~y~~fl~rv~~---~-----e~~lr~~G~W~~phPWlnlf----vp~s~i~~f~~~v~~~i~~~~~~G~~ 413 (525)
T PLN02441 346 IPGLLFTTDVSYVDFLDRVHV---E-----ELKLRSKGLWEVPHPWLNLF----VPKSRIADFDDGVFKGILLDGTNGPI 413 (525)
T ss_pred CCCCceecccCHHHHHHhhhh---H-----HHHHhhcCCcCCCCchhhee----CcHHHHHHHHHHHHhhcccccCCCeE
Confidence 1 235577788885433321 1 101100000 1122334455 344555544443322 11 1123567
Q ss_pred EEEecCccccCCCCCCCC--CcCcCCceEEEEEEEEecCCChHHHHHHHHHHHHHHHcccccccCCCCccccccCCCCCC
Q 019526 205 VFFPYGGKMSEISESEIP--FPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIG 282 (339)
Q Consensus 205 ~~~~~gg~~~~~~~~~ta--f~~R~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Y~n~~d~~~~ 282 (339)
.+.|+... +-.+.++ .|.-+ ..|.+.+...- .+..+..+++.+-.++++..-.... .....|+... .
T Consensus 414 liyP~~~~---~~~~~~s~~~P~~~-~~y~v~~l~~~-~p~~~~~~~~~~~n~~i~~~~~~~g--~~~k~Yl~~~---~- 482 (525)
T PLN02441 414 LVYPLNRS---KWDNRTSAVIPDED-IFYLVALLRSA-LPSGDDLEHLLAQNKEILRFCEKAG--IGVKQYLPHY---T- 482 (525)
T ss_pred EEEecccc---cCCCCCccccCCCC-eEEEEEEcCCC-CCCcccHHHHHHHHHHHHHHHHHcC--CceEEcCCCC---C-
Confidence 77777522 1122232 24333 44555444322 1121233566666666665433221 0123455322 1
Q ss_pred CCCCCCCcchhhhcccccccccccHHHHHHhHhhcCCCCCCcCCCCCCCCC
Q 019526 283 TNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFN 333 (339)
Q Consensus 283 ~~~~~~~~s~~~~~~~~~~y~g~n~~rL~~lK~kyDP~~vF~~~~~i~~~~ 333 (339)
.+++|++ .||.+|+|..+.|++|||.+++...|.|....
T Consensus 483 -----------~~~~W~~-HfG~~w~~f~~~K~~yDP~~iL~pgq~if~~~ 521 (525)
T PLN02441 483 -----------TQEEWKR-HFGPKWETFVRRKAKFDPLAILSPGQRIFNRA 521 (525)
T ss_pred -----------CHHHHHH-HhcchHHHHHHHHhhCCchhhcCCCCccCCCC
Confidence 1358974 78999999999999999999999999998643
No 2
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.62 E-value=1.2e-16 Score=104.63 Aligned_cols=47 Identities=40% Similarity=0.740 Sum_probs=33.9
Q ss_pred cccccCCCCCCCCCCCCCcchhhhcccccccccccHHHHHHhHhhcCCCCCCcCCCCCC
Q 019526 272 AYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIP 330 (339)
Q Consensus 272 ~Y~n~~d~~~~~~~~~~~~s~~~~~~~~~~y~g~n~~rL~~lK~kyDP~~vF~~~~~i~ 330 (339)
+|+||+|.+++. +.|...|||+|++||++||++|||+|||++.|+||
T Consensus 1 aY~Ny~d~~~~~------------~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLPG------------DDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGGS------------SHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccch------------hHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 599999987541 26788999999999999999999999999999996
No 3
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.61 E-value=1.1e-13 Score=133.21 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=58.7
Q ss_pred cceEEEEEEEcCCCcEE-ecCCCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCeEEEEEEeccchHHHHHHHHHHHHHh
Q 019526 3 ADHIVDAHMIDAKGRFL-TRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIA 81 (339)
Q Consensus 3 ~D~vl~~~VV~adG~iv-~~~~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (339)
+|+|++++|||+||+++ .++++|||||||+|||+ |+|||||++|||++|..+.... ....+ ..+++..+.++.
T Consensus 125 ~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a~~g~~-G~lGVIt~vtl~~~p~~~~~~~-~~~~~----~~~~~~~~~~~~ 198 (419)
T TIGR01679 125 HARIVSLRLVTAGGKVLDLSEGDDQDMYLAARVSL-GALGVISQVTLQTVALFRLRRR-DWRRP----LAQTLERLDEFV 198 (419)
T ss_pred hhhEEEEEEEcCCCCEEEEcCCCCHHHHHHHHhCC-CceEEEEEEEEEeecceEeEEE-EEecC----HHHHHHHHHHHH
Confidence 69999999999999999 57888999999999996 8999999999999999875322 11122 345666666654
Q ss_pred c
Q 019526 82 D 82 (339)
Q Consensus 82 ~ 82 (339)
.
T Consensus 199 ~ 199 (419)
T TIGR01679 199 D 199 (419)
T ss_pred h
Confidence 3
No 4
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=99.43 E-value=1.5e-11 Score=118.69 Aligned_cols=74 Identities=27% Similarity=0.328 Sum_probs=60.0
Q ss_pred ccceEEEEEEEcCCCcEE-ecCCCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCeEEEEEEeccchHHHHHHHHHHHHH
Q 019526 2 AADHIVDAHMIDAKGRFL-TRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYI 80 (339)
Q Consensus 2 a~D~vl~~~VV~adG~iv-~~~~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (339)
.+|+|++++|||+||+|+ .++++|+|||||+|||+ |+|||||++|||++|....... .. . ....+++..|.+.
T Consensus 130 ~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~a~~~~~-G~lGIIt~vtl~l~p~~~l~~~--~~-~--~~~~~~~~~~~~~ 203 (438)
T TIGR01678 130 LATQVVALTIMTADGEVLECSEERNADVFQAARVSL-GCLGIIVTVTIQVVPQFHLQET--SF-V--STLKELLDNWDSH 203 (438)
T ss_pred HHhhEEEEEEEcCCCcEEEeCCCCChhHHHHHhcCC-CceEeeEEEEEEEEeccceEEE--Ee-c--CCHHHHHHHHHHH
Confidence 469999999999999999 57788999999999996 8999999999999998764322 11 1 2356778777775
Q ss_pred h
Q 019526 81 A 81 (339)
Q Consensus 81 ~ 81 (339)
.
T Consensus 204 ~ 204 (438)
T TIGR01678 204 W 204 (438)
T ss_pred h
Confidence 4
No 5
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=99.40 E-value=6.4e-11 Score=117.15 Aligned_cols=63 Identities=21% Similarity=0.364 Sum_probs=51.5
Q ss_pred ccceEEEEEEEcCCCcEE-e-cC----CCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCeEEEEEEecc
Q 019526 2 AADHIVDAHMIDAKGRFL-T-RE----SMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRT 65 (339)
Q Consensus 2 a~D~vl~~~VV~adG~iv-~-~~----~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~~~~~~~~~~ 65 (339)
.+|+|++++|||+||+++ . +. ..++||||+++|+. |+|||||++++|++|.|+........|+
T Consensus 251 ~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~Gse-GtLGIIT~~tlrl~p~P~~~~~~~~~f~ 319 (555)
T PLN02805 251 MRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSE-GTLGVITEVTLRLQKIPQHSVVAMCNFP 319 (555)
T ss_pred HHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCC-CceEEEEEEEEEeecCCcceEEEEEEcC
Confidence 579999999999999999 3 22 24589999999996 8999999999999999986443333443
No 6
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.38 E-value=1e-12 Score=121.83 Aligned_cols=52 Identities=25% Similarity=0.541 Sum_probs=49.0
Q ss_pred cceEEEEEEEcCCCcEE-ecCCCCchhHHHHhhcCCCCeEEEEEEEEEeeecCC
Q 019526 3 ADHIVDAHMIDAKGRFL-TRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPP 55 (339)
Q Consensus 3 ~D~vl~~~VV~adG~iv-~~~~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~ 55 (339)
.+||++++|||++|+|+ +++..|++||.++-||= |.|||||+.+++++|+|+
T Consensus 188 i~NV~~LdVVtgkGeiv~cs~r~n~~lf~~vlGgl-GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 188 ISNVIELDVVTGKGEIVTCSKRANSNLFFLVLGGL-GQFGIITRARIKLEPAPK 240 (505)
T ss_pred hhceEEEEEEcCCCcEEecccccCceeeeeeeccC-cceeeEEEEEEEeccCCc
Confidence 58999999999999999 57889999999999995 999999999999999994
No 7
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=99.25 E-value=1.9e-11 Score=119.29 Aligned_cols=74 Identities=9% Similarity=0.201 Sum_probs=60.2
Q ss_pred ccceEEEEEEEcCCCcEE-ecCCCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCeEEEEEEeccchHHHHHHHHHHHHH
Q 019526 2 AADHIVDAHMIDAKGRFL-TRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYI 80 (339)
Q Consensus 2 a~D~vl~~~VV~adG~iv-~~~~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (339)
.+|+|++++||||||+++ .++++|||||||+|||+ |+|||||++|||+.|.+... ...... +..+++..+.++
T Consensus 177 l~d~V~~l~lVta~G~vv~~s~~~~pdLF~Aargsl-G~LGVItevTLr~~Pa~~l~-~~~~~~----~~~e~l~~~~~~ 250 (541)
T TIGR01676 177 IDEQVIAMKLVTPAKGTIEISKDKDPELFFLARCGL-GGLGVVAEVTLQCVERQELV-EHTFIS----NMKDIKKNHKKF 250 (541)
T ss_pred HHHhEEEEEEEECCCCEEEECCCCCHHHHHHHhcCC-CceEeEEEEEEEEEecccee-EEEEec----CHHHHHHHHHHH
Confidence 369999999999999999 57788999999999996 88999999999999998853 222222 245677777775
Q ss_pred h
Q 019526 81 A 81 (339)
Q Consensus 81 ~ 81 (339)
.
T Consensus 251 ~ 251 (541)
T TIGR01676 251 L 251 (541)
T ss_pred H
Confidence 4
No 8
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.22 E-value=3e-11 Score=112.97 Aligned_cols=55 Identities=20% Similarity=0.413 Sum_probs=48.2
Q ss_pred ccceEEEEEEEcCCCcEE-ecC-----CCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCeE
Q 019526 2 AADHIVDAHMIDAKGRFL-TRE-----SMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTV 57 (339)
Q Consensus 2 a~D~vl~~~VV~adG~iv-~~~-----~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~~ 57 (339)
.+|+|++++||++||+|+ ... ..++||||+++|++ |+|||||+++||++|.|...
T Consensus 113 ~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-GtLGVitevtlkl~P~p~~~ 173 (352)
T PRK11282 113 VRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GTLGVLLEVSLKVLPRPRAE 173 (352)
T ss_pred HHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC-chhhhheEEEEEEEecCceE
Confidence 579999999999999999 322 24689999999996 99999999999999999854
No 9
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.20 E-value=2.9e-11 Score=119.44 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=49.5
Q ss_pred ccceEEEEEEEcCCC------cEE-ecCCCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCeE
Q 019526 2 AADHIVDAHMIDAKG------RFL-TRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTV 57 (339)
Q Consensus 2 a~D~vl~~~VV~adG------~iv-~~~~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~~ 57 (339)
.+|+|++++|||+|| +|+ .++++|||||||+|||+ |+|||||++|||++|.+...
T Consensus 154 l~d~V~~l~vV~a~G~a~G~~~v~~~s~~~~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~~ 215 (557)
T TIGR01677 154 VHDYVVGIRLVVPASAAEGFAKVRILSEGDTPNEFNAAKVSL-GVLGVISQVTLALQPMFKRS 215 (557)
T ss_pred hhheEEEEEEEeCCCcccCcceEEEeCCCCCHHHHHhhccCC-CccEeeeEEEEEEEccccce
Confidence 369999999999998 788 57788999999999996 99999999999999987643
No 10
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.08 E-value=5.1e-09 Score=102.34 Aligned_cols=55 Identities=27% Similarity=0.436 Sum_probs=46.3
Q ss_pred ccceEEEEEEEcCCCcEE-ecC-----CCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCeE
Q 019526 2 AADHIVDAHMIDAKGRFL-TRE-----SMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTV 57 (339)
Q Consensus 2 a~D~vl~~~VV~adG~iv-~~~-----~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~~ 57 (339)
..|+|++++||++||+++ ... .+..||+++.-|+. |+|||||++++|++|.|+..
T Consensus 150 ~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~-GtlGiit~~tl~l~p~~~~~ 210 (459)
T COG0277 150 TRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTALFVGSE-GTLGIITEATLKLLPLPETK 210 (459)
T ss_pred HHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHhcccCC-ccceEEEEEEEEeccCCchh
Confidence 479999999999999999 322 23368888888885 99999999999999988754
No 11
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.00 E-value=1.8e-09 Score=106.23 Aligned_cols=57 Identities=25% Similarity=0.451 Sum_probs=49.4
Q ss_pred ccceEEEEEEEcCCCcEE-ecC----CCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCeEEE
Q 019526 2 AADHIVDAHMIDAKGRFL-TRE----SMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTV 59 (339)
Q Consensus 2 a~D~vl~~~VV~adG~iv-~~~----~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~~~~ 59 (339)
.+|+|++++|||+||+++ .+. .+++||+|+++|++ |+|||||+++||++|.|+....
T Consensus 175 ~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~~Gs~-GtlGIIt~atlkl~p~p~~~~~ 236 (499)
T PRK11230 175 TVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALFTGSE-GMLGVVTEVTVKLLPKPPVARV 236 (499)
T ss_pred hhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhhccCC-CccEEEEEEEEEEEcCCcceEE
Confidence 579999999999999999 332 34789999999996 8999999999999999986433
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=98.93 E-value=3.7e-09 Score=104.28 Aligned_cols=73 Identities=11% Similarity=0.159 Sum_probs=58.4
Q ss_pred cceEEEEEEEcCCCcEE-ecCCCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCeEEEEEEeccchHHHHHHHHHHHHHh
Q 019526 3 ADHIVDAHMIDAKGRFL-TRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIA 81 (339)
Q Consensus 3 ~D~vl~~~VV~adG~iv-~~~~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (339)
+|+|++++||+++|+++ .+.++|||||||+|||. |.|||||++|||+.|...... ..+.. ...++++.+.++.
T Consensus 213 ~d~V~~l~lVta~G~vv~~s~~~~pdLF~aar~gl-G~lGVIteVTLql~P~~~L~~---~~~~~--~~~~~~~~~~~~~ 286 (573)
T PLN02465 213 DEQVVSMKLVTPAKGTIELSKEDDPELFRLARCGL-GGLGVVAEVTLQCVPAHRLVE---HTFVS--NRKEIKKNHKKWL 286 (573)
T ss_pred hheEEEEEEEECCCCEEEECCCCCHHHHhHhhccC-CCCcEEEEEEEEEEecCceEE---EEEEe--cHHHHHHHHHHHH
Confidence 69999999999999999 57788999999999996 889999999999999987532 22222 2345666666654
No 13
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=98.80 E-value=1.9e-08 Score=96.96 Aligned_cols=62 Identities=24% Similarity=0.362 Sum_probs=50.7
Q ss_pred ccceEEEEEEEcCCCcEE-ec-----CCCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCeEEEEEEec
Q 019526 2 AADHIVDAHMIDAKGRFL-TR-----ESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPR 64 (339)
Q Consensus 2 a~D~vl~~~VV~adG~iv-~~-----~~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~~~~~~~~~ 64 (339)
..|+|++++||++||+++ .. ....+||+|.+.|+. |+|||||+++||++|.|+........+
T Consensus 117 ~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~-GtlGiit~~~lkl~p~p~~~~~~~~~f 184 (413)
T TIGR00387 117 TVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSE-GTLGIVTEATLKLLPKPENIVVALAFF 184 (413)
T ss_pred HHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCC-ccceEEEEEEEEeecCCCccEEEEEEC
Confidence 469999999999999999 33 234579999999996 899999999999999998643333344
No 14
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.14 E-value=2e-06 Score=79.36 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=43.8
Q ss_pred ccceEEEEEEEcCCCcEEecCCCCchhHHHHhhcCCC-CeEEEEEEEEEeeecC
Q 019526 2 AADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGS-SFGIIVSWKIKLVAVP 54 (339)
Q Consensus 2 a~D~vl~~~VV~adG~iv~~~~~n~DLfWAlRGgGg~-nFGIVt~~~~k~~p~~ 54 (339)
.+|+|++++||++||+++.. .+.||+|+.|+++.+ ++||||+.+||++|..
T Consensus 142 ~~d~v~~v~vv~~~G~~~~~--~~~e~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 142 TADVLESVEVLDRDGEIKTL--SNEELGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred hheeEEEEEEEeCCCCEEEE--EHHHcCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 47999999999999999952 256999999998644 4899999999999874
No 15
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=97.64 E-value=0.00052 Score=61.98 Aligned_cols=194 Identities=12% Similarity=0.177 Sum_probs=87.9
Q ss_pred EEEEEEEEcCc-cchhhHHhhhccCCCCC--ccceeeecHHHHHHhhhcccCccccccccccccccc-ccceeEeecccc
Q 019526 103 CLFTSLFLGGV-DRLLPLMQQSFPELGLT--KEDCREMSFIESIVYLDGFKIRESINADVLINERFV-KRFFIGKADFVT 178 (339)
Q Consensus 103 ~~~~~~~~G~~-~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~ 178 (339)
+.+...|+.+. +.....+..++..|+.. ...+.+++|.+.+..+. .+ +..+...+. ...+.+-+.|
T Consensus 78 LE~a~~y~~~~~~~vd~~~~~LL~~L~~~~~~~f~~DvsY~dFL~Rv~---~~-----E~~Lr~~G~WdvPHPWlnlf-- 147 (281)
T PF09265_consen 78 LEVAKYYDPPTAPDVDQEVEALLAGLSFIPGLAFTEDVSYVDFLDRVH---SS-----EEKLRSKGLWDVPHPWLNLF-- 147 (281)
T ss_dssp EEEEEEE-TTTHHHHHHHHHHHHTT--S-TT-EEEEEEEHHHHHTCCH---HH-----HHHHHHCTTSSS----EEEE--
T ss_pred EEEEEecCCccchhhHHHHHHHHhhcCCCcCceeeccccHHHHHHHhh---hH-----HHHHHhcCCccccCcceeee--
Confidence 33444555442 23333344444444432 24567889988433221 11 111111010 1222344556
Q ss_pred CCCCHHHHHHHHHHHhcC---CCCceeEEEEEecCccccCCCCCCC--CCcCcCCceEEEEEEEEecC-CChHHHHHHHH
Q 019526 179 VPIPVEALEGAYDLFYEE---DPRTYGLLVFFPYGGKMSEISESEI--PFPHRAGNIYTLLYYAEWQD-ATDEAYQRHLN 252 (339)
Q Consensus 179 ~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~gg~~~~~~~~~t--af~~R~~~~~~~~~~~~w~~-~~~~~~~~~~~ 252 (339)
++...|.+..+.+.+. .......+.+.++... +-.+.+ ..|..+ ..|.+.+...-.. ...+..+.+.+
T Consensus 148 --vP~s~i~dF~~~V~~~il~~~~~~GpiLvYP~~~~---kwd~~~s~v~Pde~-vfylv~lLrsa~P~~~~~~l~~l~~ 221 (281)
T PF09265_consen 148 --VPKSRIEDFDRGVFKGILKDDGNSGPILVYPLNRS---KWDTRMSAVIPDED-VFYLVALLRSADPSDGPDDLERLLE 221 (281)
T ss_dssp --EEHHHHHHHHHHCCCCCTTTS-S-SEEEEEEEEGG---GS-TTSS----SSS-EEEEEEEEE---TTSSCCHHHHHHH
T ss_pred --cchHHHHHHHHHHHHHhhccCCCCceEEEEEeccc---ccCCCCcccCCCCC-eEEEEEEeCCCCCCCCchhHHHHHH
Confidence 4566666666654332 1122356777777522 111222 235544 5666665554421 12223456666
Q ss_pred HHHHHHHcccccccCCCCccccccCCCCCCCCCCCCCcchhhhcccccccccccHHHHHHhHhhcCCCCCCcCCCCCC
Q 019526 253 MVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIP 330 (339)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~Y~n~~d~~~~~~~~~~~~s~~~~~~~~~~y~g~n~~rL~~lK~kyDP~~vF~~~~~i~ 330 (339)
-.+++++...... .....|+.-. . .+++|+ ..||..++++++.|++|||.+++...|.|.
T Consensus 222 qN~~il~~c~~ag--i~~k~Yl~~~---~------------t~~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~IF 281 (281)
T PF09265_consen 222 QNRRILEFCRKAG--IGGKQYLPHY---T------------TQEDWR-RHFGPKWERFVERKRRYDPKAILAPGQGIF 281 (281)
T ss_dssp HHHHHHHHHHHTT----EEESS------S------------SHHHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-SS
T ss_pred HHHHHHHHHHHcC--CceEECCCCC---C------------CHHHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCCC
Confidence 6677765543221 0123454322 1 245897 578999999999999999999999999884
No 16
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=97.29 E-value=0.00038 Score=64.47 Aligned_cols=53 Identities=26% Similarity=0.411 Sum_probs=47.4
Q ss_pred ceEEEEEEEcCCCcEE--ecCCCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCeE
Q 019526 4 DHIVDAHMIDAKGRFL--TRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTV 57 (339)
Q Consensus 4 D~vl~~~VV~adG~iv--~~~~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~~ 57 (339)
|-+.++|||+|||++| +..++|+|||.|+-=+- |..|..+..++|..|..+.+
T Consensus 178 ~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSq-GTlgfLVaatiriIkvK~Yv 232 (543)
T KOG1262|consen 178 HICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQ-GTLGFLVAATIRIIKVKKYV 232 (543)
T ss_pred hhhheeEEEecCCeEEEecCCcccCceEEEccccc-CchheeeeeEEEEEeccceE
Confidence 5678999999999999 35569999999999994 99999999999999998864
No 17
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.50 E-value=0.0026 Score=59.99 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=41.8
Q ss_pred ccceEEEEEEEcC-CCcEEe-cCCCCchhHHHHhhc--CCCCeEEEEEEEEEeeecC
Q 019526 2 AADHIVDAHMIDA-KGRFLT-RESMGEDLFWAIRGS--GGSSFGIIVSWKIKLVAVP 54 (339)
Q Consensus 2 a~D~vl~~~VV~a-dG~iv~-~~~~n~DLfWAlRGg--Gg~nFGIVt~~~~k~~p~~ 54 (339)
.+|.|.++++|+. +|+++. + +.||+|+.|+. .+++++|||+++||++|..
T Consensus 144 i~D~l~sV~vvd~~~G~~~~~~---~~el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 144 VSDTITRVRLLDRRTGEVRWVP---AADLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred HhhhEeEEEEEECCCCEEEEEE---HHHcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 3699999999985 599994 3 78999999995 2246899999999999873
No 18
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.16 E-value=0.0066 Score=56.03 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=39.1
Q ss_pred ccceEEEEEEEcCCCcEEecCCCCchhHHHHhhcCCCCeEEEEEEEEEeeecC
Q 019526 2 AADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVP 54 (339)
Q Consensus 2 a~D~vl~~~VV~adG~iv~~~~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~ 54 (339)
.+|+|++++||++||...-+ ..|+.|+.|+..=+..||||+++||++|..
T Consensus 147 i~d~v~~v~vv~~~G~~~~~---~~e~~f~YR~s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 147 MKDVVTAVELATADGAGFVP---AAALGYAYRTCRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred hhheEEEEEEECCCCcEEee---hhhcCcccceeccCCCeEEEEEEEEEecCC
Confidence 47999999999999943322 579999999973112489999999999854
No 19
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=94.34 E-value=0.046 Score=50.55 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=40.1
Q ss_pred ccceEEEEEEEcCCCcEEe-cCCCCchhHHHHhhcCC-CCeEEEEEEEEEeeec
Q 019526 2 AADHIVDAHMIDAKGRFLT-RESMGEDLFWAIRGSGG-SSFGIIVSWKIKLVAV 53 (339)
Q Consensus 2 a~D~vl~~~VV~adG~iv~-~~~~n~DLfWAlRGgGg-~nFGIVt~~~~k~~p~ 53 (339)
.+|.|.+++||++||+++. + +.||.|+-|...= .+..||++.+||+.+.
T Consensus 147 ~~dvl~~v~vv~~~G~v~~~~---~~e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 147 ISFVLTEAVVMTGDGELRTLT---KEAFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred hheeeeEEEEEeCCCCEEEEE---HHHhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 3688899999999999994 4 6789999999831 2367999999999764
No 20
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=93.80 E-value=0.3 Score=45.65 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=39.5
Q ss_pred ceEEEEEEEcCCCcEEe--c--CCCC--chhHHHHhhcCCCCeEEEEEEEEEeeecCCeE
Q 019526 4 DHIVDAHMIDAKGRFLT--R--ESMG--EDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTV 57 (339)
Q Consensus 4 D~vl~~~VV~adG~iv~--~--~~~n--~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~~ 57 (339)
-+|+++|||+++|+|+. + +..| -||=--.-|+- |..||||...+-+.|.|+.+
T Consensus 211 gsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSE-GtlGVvT~vSil~~~kpksv 269 (511)
T KOG1232|consen 211 GSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKSV 269 (511)
T ss_pred cceeeeEEEcCCCchhhhhhhhcccCccccchhheecCC-ceeeEEeeEEEeecCCCcce
Confidence 37999999999999993 1 1222 23333335774 88999999999999999865
No 21
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=93.62 E-value=0.25 Score=47.25 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=44.5
Q ss_pred ceEEEEEE----EcCCCcEE-ecCCCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCeEEEE
Q 019526 4 DHIVDAHM----IDAKGRFL-TRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVF 60 (339)
Q Consensus 4 D~vl~~~V----V~adG~iv-~~~~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~~~~~ 60 (339)
|.|.++.+ +.+||.++ -+++..||||-|.|=+= |-.|||.+.||++.|.-+....+
T Consensus 164 ~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~AAkvSL-G~LGVIs~VTl~~vp~Fk~s~t~ 224 (518)
T KOG4730|consen 164 DYVSEIISVSPITPADGFVVVLSEEKDPELFNAAKVSL-GVLGVISQVTLSVVPAFKRSLTY 224 (518)
T ss_pred cccceeEEEeeeccCCceEEEecccCCHHHHhhhhhcc-cceeEEEEEEEEEEecceeeeEE
Confidence 44555554 45899877 47888999999999885 77999999999999998765433
No 22
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=93.16 E-value=0.17 Score=47.36 Aligned_cols=52 Identities=33% Similarity=0.527 Sum_probs=45.6
Q ss_pred ceEEEEEEEcCCCcEEe-----cCCCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCe
Q 019526 4 DHIVDAHMIDAKGRFLT-----RESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPT 56 (339)
Q Consensus 4 D~vl~~~VV~adG~iv~-----~~~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~ 56 (339)
|-|+-+++|++.|.|-. .-+..||.---+-|.- |..||||+.++|..|.|..
T Consensus 286 DLVVh~~mVtP~Giiek~Cq~PRmS~GPDihh~IlGSE-GTLGVitEvtiKirPiPe~ 342 (613)
T KOG1233|consen 286 DLVVHLNMVTPKGIIEKQCQVPRMSSGPDIHHIILGSE-GTLGVITEVTIKIRPIPEV 342 (613)
T ss_pred HheEEEEeecCcchhhhhhcCCcccCCCCcceEEeccC-cceeEEEEEEEEEeechhh
Confidence 67899999999998872 1256899999999996 9999999999999999974
No 23
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=92.56 E-value=0.66 Score=41.73 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=19.2
Q ss_pred ccccccccccHHHHHHhHhhcCCCCCCcCC
Q 019526 297 VWGKKYFKNNFYRLVQVKTMVDPEDFFRNE 326 (339)
Q Consensus 297 ~~~~~y~g~n~~rL~~lK~kyDP~~vF~~~ 326 (339)
..++.| .++++..++|+++||+|+|.++
T Consensus 227 ~l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 227 QLRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 344445 8999999999999999999764
No 24
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=90.28 E-value=0.63 Score=40.92 Aligned_cols=64 Identities=13% Similarity=0.193 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCccccccCCCCCCCCCCCCCcchhhhcccccccccc-cHHHHHHhHhhcCCCCCC
Q 019526 245 EAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKN-NFYRLVQVKTMVDPEDFF 323 (339)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Y~n~~d~~~~~~~~~~~~s~~~~~~~~~~y~g~-n~~rL~~lK~kyDP~~vF 323 (339)
+..+...++.+++++.+.... +-+.-.+ |.. .....|-...+|. .+.-+++||+.+||+|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~g------G~is~eH---------G~G--~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~il 243 (248)
T PF02913_consen 181 EEPERAEALWDELYELVLELG------GSISAEH---------GIG--KLKKPYLEEEYGPAALRLMRAIKQAFDPNGIL 243 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-------BBSSSS---------GGG--HHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-B
T ss_pred HHHHHHHHHHHHHHHHHHhcc------ccccccc---------chh--hhhHHHHHHhcchHHHHHHHHhhhccCCccCC
Confidence 344667778888876665542 2221111 111 1112333445565 699999999999999998
Q ss_pred cC
Q 019526 324 RN 325 (339)
Q Consensus 324 ~~ 325 (339)
+.
T Consensus 244 NP 245 (248)
T PF02913_consen 244 NP 245 (248)
T ss_dssp ST
T ss_pred CC
Confidence 74
No 25
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=89.99 E-value=0.89 Score=45.07 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=33.8
Q ss_pred hhHHHH--hhcCCCCeEEEEEEEEEeeecCCeEEEEEEeccchHHHHHHHHHHH
Q 019526 27 DLFWAI--RGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQ 78 (339)
Q Consensus 27 DLfWAl--RGgGg~nFGIVt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (339)
||---. -|. .|..||+ +.+++++|.|....++-+.++-.+.+.++.+...
T Consensus 239 Dl~~LfeasGs-eGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il 290 (564)
T PRK11183 239 DPRRLFEASGC-AGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHIL 290 (564)
T ss_pred CHHHHhhccCC-CceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHH
Confidence 665555 677 4899999 9999999999865555555544334444444443
No 26
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=86.58 E-value=0.8 Score=42.44 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=37.9
Q ss_pred ccceEEEEEEEcCCCcEEecCCCCchhHHHHhhcCCCC--eEEEEEEEEEeee
Q 019526 2 AADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSS--FGIIVSWKIKLVA 52 (339)
Q Consensus 2 a~D~vl~~~VV~adG~iv~~~~~n~DLfWAlRGgGg~n--FGIVt~~~~k~~p 52 (339)
.+|+|++++||++||+++.- .+.|+.|+-|-.. -. --||++.+|++.|
T Consensus 147 i~D~l~~v~vv~~~G~~~~~--~~~e~~f~YR~S~-~~~~~~ii~~~~~~l~~ 196 (307)
T PRK13906 147 VKDCIDYALCVNEQGSLIKL--TTKELELDYRNSI-IQKEHLVVLEAAFTLAP 196 (307)
T ss_pred hhhheeEEEEEeCCCCEEEE--EHHHccCcCCccc-CCCCCEEEEEEEEEECC
Confidence 47999999999999999941 2567889998764 22 2499999999875
No 27
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=85.55 E-value=3.4 Score=38.07 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=36.1
Q ss_pred ccceEEEEEEEcCCCcEEecCCCCchhHHHHhhcCCCC----------eEEEEEEEEEeeec
Q 019526 2 AADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSS----------FGIIVSWKIKLVAV 53 (339)
Q Consensus 2 a~D~vl~~~VV~adG~iv~~~~~n~DLfWAlRGgGg~n----------FGIVt~~~~k~~p~ 53 (339)
.+|.|+++++++.+|+++.- .+.||+|+-|-.. -. --||++.+|++.|.
T Consensus 134 i~d~l~~V~~~~~~g~~~~~--~~~el~f~YR~S~-~~~~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 134 TATVLIRAWLLLNGSECVEW--SVHDFAYGYRTSV-LKQLRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred hheeEEEEEEEeCCCCEEEE--eHHHcCcccceee-cccccccccccCCeEEEEEEEEECCC
Confidence 47999999999999999841 1459999888762 11 12788888877654
No 28
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=81.21 E-value=0.95 Score=40.38 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.4
Q ss_pred ccHHHHHHhHhhcCCCCCCcCC
Q 019526 305 NNFYRLVQVKTMVDPEDFFRNE 326 (339)
Q Consensus 305 ~n~~rL~~lK~kyDP~~vF~~~ 326 (339)
.++.+..+||+++||+|+|.+.
T Consensus 176 Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 176 KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred cCHHHHHHHHHHhCCCCccCCH
Confidence 7999999999999999999865
No 29
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=80.96 E-value=2.1 Score=39.25 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=35.0
Q ss_pred ceEEEEEEEcCCCcEEe-cCCCCchhHHHHhhcCCCC--e-EEEEEEEEEee
Q 019526 4 DHIVDAHMIDAKGRFLT-RESMGEDLFWAIRGSGGSS--F-GIIVSWKIKLV 51 (339)
Q Consensus 4 D~vl~~~VV~adG~iv~-~~~~n~DLfWAlRGgGg~n--F-GIVt~~~~k~~ 51 (339)
|.|++++||++||+++. + +.|+-|+-|-.. -. . .||++.+|++.
T Consensus 126 d~l~~v~vv~~~G~~~~~~---~~~~~f~YR~S~-f~~~~~~iil~a~~~l~ 173 (284)
T TIGR00179 126 EVLVYATILLATGKTEWLT---NEQLGFGYRTSI-FQHKYVGLVLKAEFQLT 173 (284)
T ss_pred heEEEEEEEeCCCCEEEEE---HHHccccCCccc-cCCCCcEEEEEEEEEec
Confidence 67899999999999993 3 568888888774 21 2 69999999884
No 30
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=76.23 E-value=3.2 Score=40.10 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=23.2
Q ss_pred cccccccc-ccHHHHHHhHhhcCCCCCCcC
Q 019526 297 VWGKKYFK-NNFYRLVQVKTMVDPEDFFRN 325 (339)
Q Consensus 297 ~~~~~y~g-~n~~rL~~lK~kyDP~~vF~~ 325 (339)
.|....|| ..++-+++||+.+||+|+++.
T Consensus 382 ~~~~~~~~~~~~~~~~~iK~~fDP~~ilNP 411 (413)
T TIGR00387 382 EFMPYKFNEKELETMRAIKKAFDPDNILNP 411 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcCcCCCC
Confidence 34445566 579999999999999999874
No 31
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=74.91 E-value=4.9 Score=39.96 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=26.7
Q ss_pred ccccccc-ccHHHHHHhHhhcCCCCCCcCCCCCCC
Q 019526 298 WGKKYFK-NNFYRLVQVKTMVDPEDFFRNEQSIPP 331 (339)
Q Consensus 298 ~~~~y~g-~n~~rL~~lK~kyDP~~vF~~~~~i~~ 331 (339)
|-...|| +.++-+++||+.+||+|+++...-++.
T Consensus 440 ~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~~ 474 (499)
T PRK11230 440 QMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNIPT 474 (499)
T ss_pred HHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEeCC
Confidence 3344566 679999999999999999987776543
No 32
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=71.81 E-value=2.3 Score=42.77 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.9
Q ss_pred ccHHHHHHhHhhcCCCCCCcCC
Q 019526 305 NNFYRLVQVKTMVDPEDFFRNE 326 (339)
Q Consensus 305 ~n~~rL~~lK~kyDP~~vF~~~ 326 (339)
.++++.++|++++||+|+|.++
T Consensus 482 P~~~dF~alR~~~DP~g~F~N~ 503 (557)
T TIGR01677 482 PNADKFLKVKDSYDPKGLFSSE 503 (557)
T ss_pred CCHHHHHHHHHhcCCCCccCCH
Confidence 4889999999999999999865
No 33
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=63.50 E-value=77 Score=32.14 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=22.9
Q ss_pred cccccccccccHHHHHHhHhhcCCCCCCcCC
Q 019526 296 SVWGKKYFKNNFYRLVQVKTMVDPEDFFRNE 326 (339)
Q Consensus 296 ~~~~~~y~g~n~~rL~~lK~kyDP~~vF~~~ 326 (339)
+..++.| + +++.++|++++||+|+|.++
T Consensus 537 ~~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 537 ERLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 3555545 5 99999999999999999865
No 34
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=63.29 E-value=3.8 Score=39.49 Aligned_cols=21 Identities=24% Similarity=0.653 Sum_probs=19.1
Q ss_pred ccHHHHHHhHhhcCCCCCCcC
Q 019526 305 NNFYRLVQVKTMVDPEDFFRN 325 (339)
Q Consensus 305 ~n~~rL~~lK~kyDP~~vF~~ 325 (339)
.|+++..++|+++||.|+|..
T Consensus 485 ~n~~~flkvr~~lDP~~lFss 505 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSS 505 (518)
T ss_pred cChHHHHHHHHhcCccchhhh
Confidence 689999999999999999953
No 35
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=59.56 E-value=6.1 Score=37.33 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.2
Q ss_pred cc-HHHHHHhHhhcCCCCCCcC
Q 019526 305 NN-FYRLVQVKTMVDPEDFFRN 325 (339)
Q Consensus 305 ~n-~~rL~~lK~kyDP~~vF~~ 325 (339)
.+ .+-.++||+++||.++|+.
T Consensus 324 ~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 324 APLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred HHHHHHHHHHHHhcCcccCCCC
Confidence 44 7888999999999999964
No 36
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=52.13 E-value=19 Score=33.24 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=34.2
Q ss_pred cceEEEEEEEcCCCcEEecCCCCchhHHHHhhcC---CCCeEEEEEEEEEeeecC
Q 019526 3 ADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSG---GSSFGIIVSWKIKLVAVP 54 (339)
Q Consensus 3 ~D~vl~~~VV~adG~iv~~~~~n~DLfWAlRGgG---g~nFGIVt~~~~k~~p~~ 54 (339)
.|.|+++++++ +|+++.- .+.|+-|+.|-.. .+.+ |||+.+||+.|..
T Consensus 144 ~d~l~~V~~~d-~g~v~~~--~~~e~~f~YR~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 144 AENIVEVVAYD-GKKIIRL--GKNEIKFSYRNSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred heeEEEEEEEC-CCEEEEE--chhhccccCccccCCCCCcE-EEEEEEEEEecCC
Confidence 59999999999 7877731 1346677776542 0134 9999999998753
No 37
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=45.97 E-value=33 Score=31.47 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=38.8
Q ss_pred cceEEEEEEEcCCCcEEe-cCCCCchhHHHHhhcCCCC-eEEEEEEEEEeeec
Q 019526 3 ADHIVDAHMIDAKGRFLT-RESMGEDLFWAIRGSGGSS-FGIIVSWKIKLVAV 53 (339)
Q Consensus 3 ~D~vl~~~VV~adG~iv~-~~~~n~DLfWAlRGgGg~n-FGIVt~~~~k~~p~ 53 (339)
.|.+.++++++.+|+++. + +.||-|+-|-..=.. ..||++.+||+.|-
T Consensus 134 ~d~~~~v~~ld~~G~~~~l~---~~el~f~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 134 SDVLVSVEVLDRDGEVRWLS---AEELGFGYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred heeEEEEEEEcCCCCEEEEE---HHHhCcccccCcCCCCCEEEEEEEEEeCCC
Confidence 588999999999999993 3 678889988874111 28999999999875
No 38
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=43.87 E-value=33 Score=31.72 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=37.6
Q ss_pred cceEEEEEEEcCCCcEEecCCCCchhHHHHhhcCCCC--eEEEEEEEEEeeecC
Q 019526 3 ADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSS--FGIIVSWKIKLVAVP 54 (339)
Q Consensus 3 ~D~vl~~~VV~adG~iv~~~~~n~DLfWAlRGgGg~n--FGIVt~~~~k~~p~~ 54 (339)
+|.|.++++++.+|+++.- .+.|+-|+-|-.. -. =.||++.+|++.|..
T Consensus 145 ~d~l~sV~~~d~~g~~~~~--~~~e~~f~YR~S~-f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 145 SEILDKITFIDEKGKTICK--KFKKEEFKYKISP-FQNKNTFILKATLNLKKGN 195 (302)
T ss_pred heeEEEEEEEECCCCEEEE--EHHHcCccccccc-CCCCCEEEEEEEEEEcCCC
Confidence 5899999999999999841 2567788888764 21 149999999998754
No 39
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=43.43 E-value=29 Score=32.57 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=37.0
Q ss_pred cceEEEEEEEcCC-CcEEecCCCCchhHHHHhhcCCCC-----eEEEEEEEEEeeec
Q 019526 3 ADHIVDAHMIDAK-GRFLTRESMGEDLFWAIRGSGGSS-----FGIIVSWKIKLVAV 53 (339)
Q Consensus 3 ~D~vl~~~VV~ad-G~iv~~~~~n~DLfWAlRGgGg~n-----FGIVt~~~~k~~p~ 53 (339)
.|.|.+++|++.+ |+++.- .+.|+.|+-|-.. -. =-||++.+|++.|-
T Consensus 135 ~d~l~~V~v~d~~~g~~~~~--~~~e~~f~YR~S~-f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 135 KDVCDYVEALDLATGEFVRL--SAAECRFGYRDSI-FKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred heeEEEEEEEECCCCcEEEE--EHHHcCccccccc-CCCCCcCCEEEEEEEEEecCC
Confidence 5899999999987 999841 1578888888663 22 23999999999885
No 40
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=42.69 E-value=14 Score=36.99 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=16.7
Q ss_pred HHHHHhHhhcCCCCCCcCC
Q 019526 308 YRLVQVKTMVDPEDFFRNE 326 (339)
Q Consensus 308 ~rL~~lK~kyDP~~vF~~~ 326 (339)
.+.++|++++||+|+|.++
T Consensus 516 d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 516 DASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHhCCCCccccH
Confidence 5669999999999999875
No 41
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=42.37 E-value=19 Score=27.51 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=25.6
Q ss_pred cceEEEEEEEcCCCcEE-ecCCCCchhHHHHhhcCCC
Q 019526 3 ADHIVDAHMIDAKGRFL-TRESMGEDLFWAIRGSGGS 38 (339)
Q Consensus 3 ~D~vl~~~VV~adG~iv-~~~~~n~DLfWAlRGgGg~ 38 (339)
.++|+.++ ..+|++| .....|..+|.|-+-+||-
T Consensus 35 ~~gVLtl~--~~~gt~VINkQ~p~~QIWlASp~sG~~ 69 (103)
T PRK01379 35 QGDILNLD--TDKGIYVINKQSAAKEIWLSSPVSGPY 69 (103)
T ss_pred cCCEEEEE--eCCcEEEEeCCChhhhheeecccCCCc
Confidence 46788777 5799988 5678899999999744333
No 42
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=38.30 E-value=20 Score=26.67 Aligned_cols=11 Identities=36% Similarity=0.754 Sum_probs=9.5
Q ss_pred CCCeEEEEEEE
Q 019526 37 GSSFGIIVSWK 47 (339)
Q Consensus 37 g~nFGIVt~~~ 47 (339)
-.+|||||+||
T Consensus 67 ~~~fgvItsFT 77 (109)
T PF04753_consen 67 DKYFGVITSFT 77 (109)
T ss_pred ccceeeEEeee
Confidence 47899999987
No 43
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=36.14 E-value=55 Score=29.79 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=35.4
Q ss_pred cceEEEEEEEcCCCcEEecCCCCchhHHHHhhcCCCCeEEEEEEEEEeeec
Q 019526 3 ADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAV 53 (339)
Q Consensus 3 ~D~vl~~~VV~adG~iv~~~~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~ 53 (339)
.|.|.++++++ +|+++.- .+.|+.|+-|-..=..=-||++.+||+.|.
T Consensus 123 ~d~l~~V~~~~-~g~~~~~--~~~e~~f~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 123 ADALHTVEIVH-DGGFHQY--SPDELGFGYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred heeEEEEEEEE-CCCEEEE--EHHHccccccccCCCCCEEEEEEEEEECCC
Confidence 58999999998 8998841 156788888876311113999999999864
No 44
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.78 E-value=14 Score=30.57 Aligned_cols=25 Identities=32% Similarity=0.644 Sum_probs=15.3
Q ss_pred EEEcCCCcEEecCCCCchhHHHHhhcCCCCe
Q 019526 10 HMIDAKGRFLTRESMGEDLFWAIRGSGGSSF 40 (339)
Q Consensus 10 ~VV~adG~iv~~~~~n~DLfWAlRGgGg~nF 40 (339)
=+|+.+|+++..+. . +||+ |.| |||
T Consensus 108 l~isG~gdV~epe~--~--~~aI-GSG-gny 132 (178)
T COG5405 108 LIITGNGDVIEPED--D--IIAI-GSG-GNY 132 (178)
T ss_pred EEEecCcceecCCC--C--eEEE-cCC-chH
Confidence 36788888885321 1 8888 444 444
No 45
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=32.39 E-value=28 Score=26.18 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=11.1
Q ss_pred HHHhHhhcCCCCCCc
Q 019526 310 LVQVKTMVDPEDFFR 324 (339)
Q Consensus 310 L~~lK~kyDP~~vF~ 324 (339)
-.+|.+||||+|.+.
T Consensus 78 w~~l~~KyDp~~~y~ 92 (95)
T PF03392_consen 78 WEELVKKYDPEGKYR 92 (95)
T ss_dssp HHHHHHHHTTT-TTH
T ss_pred HHHHHHHHCCCcchh
Confidence 367889999999764
No 46
>PHA02087 hypothetical protein
Probab=32.28 E-value=55 Score=22.77 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=14.3
Q ss_pred ceEEEEEEEcCCCcEEe
Q 019526 4 DHIVDAHMIDAKGRFLT 20 (339)
Q Consensus 4 D~vl~~~VV~adG~iv~ 20 (339)
.-++++.+|++||..+.
T Consensus 42 nk~v~y~lvdsdg~~ie 58 (83)
T PHA02087 42 NKLVQYMLVDSDGVKIE 58 (83)
T ss_pred ccceeEEEEcCCCcEEE
Confidence 35788999999999994
No 47
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=29.52 E-value=1.2e+02 Score=22.10 Aligned_cols=43 Identities=19% Similarity=0.089 Sum_probs=33.6
Q ss_pred ceEEEEEEEcCCCcEEecCCCCchhHHHHhhcCCCCeEEEEEEEEE
Q 019526 4 DHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSSFGIIVSWKIK 49 (339)
Q Consensus 4 D~vl~~~VV~adG~iv~~~~~n~DLfWAlRGgGg~nFGIVt~~~~k 49 (339)
|. +.+.-++-||+.|+= +.+-||.=++|=++ ..-|+|.+|.+.
T Consensus 38 ~~-~~vtYiDeD~D~ITl-ssd~eL~d~~~~~~-~~~~~v~k~~~~ 80 (82)
T cd06397 38 IK-VGVTYIDNDNDEITL-SSNKELQDFYRLSH-RESTEVIKLNVN 80 (82)
T ss_pred hH-eEEEEEcCCCCEEEe-cchHHHHHHHHhcc-cccCceeEeecc
Confidence 44 678889999999952 24889999999885 668998887653
No 48
>PF14658 EF-hand_9: EF-hand domain
Probab=28.29 E-value=43 Score=23.38 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=13.3
Q ss_pred HHHHHhHhhcCCCCC
Q 019526 308 YRLVQVKTMVDPEDF 322 (339)
Q Consensus 308 ~rL~~lK~kyDP~~v 322 (339)
.+|+.|.+.+||+|-
T Consensus 35 ~~Lq~l~~elDP~g~ 49 (66)
T PF14658_consen 35 SELQDLINELDPEGR 49 (66)
T ss_pred HHHHHHHHHhCCCCC
Confidence 389999999999985
No 49
>PF07484 Collar: Phage Tail Collar Domain; InterPro: IPR011083 This entry is represented by a domain found in Bacteriophage T4, Gp12. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This region is occasionally found in conjunction with IPR005003 from INTERPRO. Most of the proteins appear to be phage tail proteins; however some appear to be involved in other processes. For instance the RhiB protein (Q03314 from SWISSPROT) from Rhizobium leguminosarum may be involved in plant-microbe interactions []. A related protein, microcystin related protein (MrpB, Q9L3N1 from SWISSPROT) is involved in the pathogenicity of Microcystis aeruginosa. The finding of this family in a structural component of the phage tail fibre baseplate (P10930 from SWISSPROT) suggests that its function is structural rather than enzymatic. Structural studies show this region consists of a helix and a loop [] and three beta-strands. This alignment does not catch the third strand as it is separated from the rest of the structure by around 100 residues. This strand is conserved in homologues but the intervening sequence is not. Much of the function of P10930 from SWISSPROT appears to reside in this intervening region. In the tertiary structure of the phage baseplate this domain forms part of the collar and may bind SO4. The long unconserved region maybe due to domain swapping in and out of a loop or due to rapid evolution.; PDB: 1OCY_A 2XGF_C 1H6W_A.
Probab=28.17 E-value=29 Score=23.38 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=11.4
Q ss_pred EcCCCcEEecCCCCchhHHHH
Q 019526 12 IDAKGRFLTRESMGEDLFWAI 32 (339)
Q Consensus 12 V~adG~iv~~~~~n~DLfWAl 32 (339)
..+||+.+. ..++|+||=.|
T Consensus 16 l~cdG~~~~-~~~Yp~L~~~i 35 (57)
T PF07484_consen 16 LLCDGQSLS-IAQYPALFALI 35 (57)
T ss_dssp EESBS-B---TTT-HHHHHHC
T ss_pred hhcCCCcCC-hhHhHHHHHHh
Confidence 356788774 24599999877
No 50
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=25.33 E-value=65 Score=24.30 Aligned_cols=33 Identities=3% Similarity=0.282 Sum_probs=24.3
Q ss_pred cceEEEEEEEcCCCcEE-ecCCCCchhHHHHh-hcC
Q 019526 3 ADHIVDAHMIDAKGRFL-TRESMGEDLFWAIR-GSG 36 (339)
Q Consensus 3 ~D~vl~~~VV~adG~iv-~~~~~n~DLfWAlR-GgG 36 (339)
.+.||.+++ .-.|++| ...+.|..+|.|-+ .||
T Consensus 34 ~~gVLti~~-~~~~~~VINkQ~p~~QIWlsSp~sGp 68 (97)
T TIGR03422 34 SSGVLTLEL-PSVGTYVINKQPPNKQIWLSSPVSGP 68 (97)
T ss_pred CCCEEEEEE-CCCCEEEEeCCChhhHHheecCCCCC
Confidence 467888777 3345777 56788999999997 654
No 51
>PF09129 Chol_subst-bind: Cholesterol oxidase, substrate-binding; InterPro: IPR015213 The substrate-binding domain found in cholesterol oxidase is composed of an eight-stranded mixed beta-pleated sheet and six alpha-helices. This domain is positioned over the isoalloxazine ring system of the FAD cofactor bound by the FAD-binding domain (IPR006094 from INTERPRO) and forms the roof of the active site cavity, allowing for catalysis of oxidation and isomerisation of cholesterol to cholest-4-en-3-one []. ; PDB: 3JS8_A 1I19_B 2I0K_A.
Probab=25.23 E-value=40 Score=30.65 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=15.2
Q ss_pred cccHHHHHHhHhhcCCCCCCcCC
Q 019526 304 KNNFYRLVQVKTMVDPEDFFRNE 326 (339)
Q Consensus 304 g~n~~rL~~lK~kyDP~~vF~~~ 326 (339)
++|+..-++.-.+|||++||+++
T Consensus 292 ~~~Wd~A~atL~~~DPhriFss~ 314 (321)
T PF09129_consen 292 DDNWDTARATLNRYDPHRIFSSP 314 (321)
T ss_dssp CCSHHHHHHHHHHH-TT--S--H
T ss_pred CCCHHHHHHHHhccCccchhccH
Confidence 36788888999999999999864
No 52
>cd03521 Link_domain_KIAA0527_like Link_domain_KIAA0527_like; this domain is found in the human protein KIAA0527. Sequence-wise, it is highly similar to the link domain. The link domain is a hyaluronan-binding (HA) domain. KIAA0527 contains a single link module. The KIAA0527 gene was originally cloned from human brain tissue.
Probab=25.15 E-value=76 Score=23.64 Aligned_cols=36 Identities=17% Similarity=0.035 Sum_probs=26.2
Q ss_pred cCCCcEEecCCCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCe
Q 019526 13 DAKGRFLTRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPT 56 (339)
Q Consensus 13 ~adG~iv~~~~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~ 56 (339)
|+||++...-+ | +|+|++--++-+..++..+|+|..
T Consensus 53 LaDGTVrypVc-~-------~~~~~~~~~~~~~~~~e~~p~p~~ 88 (95)
T cd03521 53 LADGTVGTTVC-N-------PVVAEALKAVDVKVEIETNPIPFA 88 (95)
T ss_pred ccCCccccccc-c-------cccCcceeeeeEEEEeeccCCCcc
Confidence 67888882110 1 255568899999999999999863
No 53
>PF03941 INCENP_ARK-bind: Inner centromere protein, ARK binding region; InterPro: IPR005635 This region of the inner centromere protein has been found to be necessary and sufficient for binding to aurora-related kinase. This interaction has been implicated in the coordination of chromosome segregation with cell division in yeast [].; PDB: 2BFX_C 2BFY_C 3ZTX_D 2VGO_D 2VGP_D 2VRX_D 4AF3_D.
Probab=24.75 E-value=22 Score=23.93 Aligned_cols=28 Identities=18% Similarity=0.550 Sum_probs=20.8
Q ss_pred hcccccccccccHHHHHHhHhhcCCCCCCcC
Q 019526 295 ASVWGKKYFKNNFYRLVQVKTMVDPEDFFRN 325 (339)
Q Consensus 295 ~~~~~~~y~g~n~~rL~~lK~kyDP~~vF~~ 325 (339)
-+.|++ +.++.+...-.+.+||+-+|..
T Consensus 18 iP~WA~---~~~L~~~L~~Q~~~Dpd~IFG~ 45 (57)
T PF03941_consen 18 IPSWAQ---SPNLRQALKKQQNIDPDEIFGP 45 (57)
T ss_dssp --GGGS---HHHHHHHHHHHHHS-HHHHCTT
T ss_pred CCCCcC---cHHHHHHHHHHhccCHHHHcCC
Confidence 347876 5788888888889999999974
No 54
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=20.28 E-value=60 Score=30.93 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.3
Q ss_pred cHHHHHHhHhhcCCCCCCcCC
Q 019526 306 NFYRLVQVKTMVDPEDFFRNE 326 (339)
Q Consensus 306 n~~rL~~lK~kyDP~~vF~~~ 326 (339)
-..-|+++|+..||.|+|...
T Consensus 590 G~~llka~K~~lDP~NIFa~~ 610 (613)
T KOG1233|consen 590 GIALLKAIKSELDPANIFASA 610 (613)
T ss_pred hHHHHHHHHHhcChhhhcccc
Confidence 378899999999999999754
No 55
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=20.13 E-value=74 Score=24.23 Aligned_cols=32 Identities=6% Similarity=0.190 Sum_probs=23.0
Q ss_pred cceEEEEEEEcCCCcEE-ecCCCCchhHHHHhhc
Q 019526 3 ADHIVDAHMIDAKGRFL-TRESMGEDLFWAIRGS 35 (339)
Q Consensus 3 ~D~vl~~~VV~adG~iv-~~~~~n~DLfWAlRGg 35 (339)
.++|+.+++= -.|++| ...+.+..+|.|-+.|
T Consensus 32 ~~gVLti~f~-~~~~~VINkQ~p~~QIWlaspsG 64 (102)
T TIGR03421 32 AGGVLTLTFE-NGSQIIINKQEPLHQIWLAAKSG 64 (102)
T ss_pred CCCEEEEEEC-CCCEEEEeCCchhhhheeecCCC
Confidence 4677777663 355666 5667899999999944
Done!