BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019527
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 231 bits (588), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 137/338 (40%), Positives = 191/338 (56%), Gaps = 13/338 (3%)
Query: 12 NWKLYMISFSQIGFWQIRFTTSAKF---KL--ELVIFFKKKNIANHTISTQGLFEGMKAY 66
+WK + ++ F I + K+ KL + + + + A H Q FEG+KAY
Sbjct: 10 DWKNLGFEYHKLPFRYISYYKDGKWDDGKLTEDATLHISESSPALHY--GQEAFEGLKAY 67
Query: 67 RKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG-SL 125
R +DG + LFRP+ NA RLQ A+R+ MP D+FIDA KQ AN+ +VPP G G +L
Sbjct: 68 RTKDGSVQLFRPNMNAERLQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATL 127
Query: 126 YIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGV 185
Y+RPLL+G G ++G+ PA EY F +FA PVGNYFK GLAP N ++D++ RA P G G
Sbjct: 128 YLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGAA 187
Query: 186 KAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF-ILKGNIISTPATSGT 244
K NYA L A R FSDV+YLD +EEV S N F I K N TP S +
Sbjct: 188 KVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITP-LSPS 246
Query: 245 ILAGITRKSIIEIASD-CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI 303
IL +T+ S++ +A G + E + VDEL + E GTA V++P+G + +
Sbjct: 247 ILPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHGDDFH 306
Query: 304 EF--KTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 339
F +T V+ +LY L GIQ G +K +GW +++
Sbjct: 307 VFYSETEVGPVTHKLYDELTGIQFGDVKAPEGWIYKVD 344
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/295 (40%), Positives = 177/295 (60%), Gaps = 12/295 (4%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
Q +FEG+KAYR DG +V FRP+ NA RLQ+ A R+ +P + FI++++Q +++W
Sbjct: 79 QEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKW 138
Query: 117 VPPPG-KGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFH 175
VPP G + SLY+RP ++ + P LG+ P+ EY +L+ ASP G YFK G+ P+++++ E+
Sbjct: 139 VPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYV 198
Query: 176 RATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN- 234
RA+PGG G K NYA L A ++A G V++LD++ ++ +EE+ N+F + G+
Sbjct: 199 RASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSG 258
Query: 235 ---IISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELL------EADEVFCTG 285
+ TP SG++L GITR S++++A+D GF VEER I VDE E EVF G
Sbjct: 259 GSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACG 318
Query: 286 TAVVVAPVGSITYRGKRIEFKTGAQ-SVSRELYSTLVGIQTGLIKDNKGWTVEIN 339
TA V+ PV + + G ++ L TL GIQ G D GW +N
Sbjct: 319 TAAVITPVSHVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 373
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/295 (40%), Positives = 177/295 (60%), Gaps = 12/295 (4%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
Q +FEG+KAYR DG +V FRP+ NA RLQ+ A R+ +P + FI++++Q +++W
Sbjct: 78 QEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKW 137
Query: 117 VPPPG-KGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFH 175
VPP G + SLY+RP ++ + P LG+ P+ EY +L+ ASP G YFK G+ P+++++ E+
Sbjct: 138 VPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYV 197
Query: 176 RATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN- 234
RA+PGG G K NYA L A ++A G V++LD++ ++ +EE+ N+F + G+
Sbjct: 198 RASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSG 257
Query: 235 ---IISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELL------EADEVFCTG 285
+ TP SG++L GITR S++++A+D GF VEER I VDE E EVF G
Sbjct: 258 GSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACG 317
Query: 286 TAVVVAPVGSITYRGKRIEFKTGAQ-SVSRELYSTLVGIQTGLIKDNKGWTVEIN 339
TA V+ PV + + G ++ L TL GIQ G D GW +N
Sbjct: 318 TAAVITPVSHVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 372
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 169/296 (57%), Gaps = 12/296 (4%)
Query: 56 TQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKR 115
Q +FEG+KAYR DG +V FR D NA RL++ A R+ +P FI++++Q +K
Sbjct: 73 AQEVFEGLKAYRWADGSIVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKA 132
Query: 116 WVPPPG-KGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEF 174
WVP G + +LY+RP + + P LG+ PA +Y +L+ ASP G YFK G+AP++++V E+
Sbjct: 133 WVPGAGGEEALYLRPFIFATEPGLGVRPATQYRYLLIASPAGAYFKGGIAPVSVWVSTEY 192
Query: 175 HRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN 234
RA PGG G K NYA L A + A G V++LD+V ++ +EE+ NIF + G+
Sbjct: 193 VRACPGGTGAAKFGGNYAASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGMNIFFVLGS 252
Query: 235 ----IISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELL------EADEVFCT 284
+ TP SG++L GITR S++++A D GF VEER I +DE E EVF
Sbjct: 253 GGSARLVTPELSGSLLPGITRDSLLQLAIDAGFAVEERRIDIDEWQKKAAAGEITEVFAC 312
Query: 285 GTAVVVAPVGSITYRGKRIEFKTGA-QSVSRELYSTLVGIQTGLIKDNKGWTVEIN 339
GTA V+ PV + + G V+ L TL GIQ G D GW +
Sbjct: 313 GTAAVITPVARVRHGASEFRIADGQPGEVTMALRDTLTGIQRGTFADTHGWMARLG 368
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UYY|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|C Chain C, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|D Chain D, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
Length = 358
Score = 210 bits (535), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 165/288 (57%), Gaps = 8/288 (2%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
Q FEG+KAYR DG + LFRPDQNA R++ R+ MP S +QFIDA Q AN+ +
Sbjct: 73 QQCFEGLKAYRCADGSINLFRPDQNAARMRMSCRRLLMPELSDEQFIDACLQVVRANEHF 132
Query: 117 VPPPGK-GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFH 175
+PP G GSLY+RP ++G G +G+ APE+ F VF PVG YFK GL P N ++ ++
Sbjct: 133 LPPYGTGGSLYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYFKGGLTPTN-FITSDYD 191
Query: 176 RATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL--KG 233
RA P G G K NYA L AK R F+DV+YLD +EE + N F + G
Sbjct: 192 RAAPHGTGAAKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDG 251
Query: 234 NIISTPATSGTILAGITRKSIIEIASD-CGFQVEERAIPVDELLEADEVFCTGTAVVVAP 292
TP S +IL IT+ S++ +A G +VEE I +DEL + E GTA V+ P
Sbjct: 252 QKFVTP-QSPSILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITP 310
Query: 293 VGSITYRGKRIEFKTGAQ--SVSRELYSTLVGIQTGLIKDNKGWTVEI 338
+G I + F + ++ V+R LY LVGIQ G + +GW V++
Sbjct: 311 IGGIQHGDDFHVFYSESEPGPVTRRLYDELVGIQYGDKEAPEGWIVKV 358
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 156/294 (53%), Gaps = 20/294 (6%)
Query: 59 LFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVP 118
LFEG+KA+R D ++ LF+P+ N R+ A R +P ++ ++ ++Q ++ WVP
Sbjct: 94 LFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVP 153
Query: 119 PPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRA 177
SLYIRP +G+ P LG+ + V SPVG YF G P++L+ ++ RA
Sbjct: 154 YSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRA 213
Query: 178 TPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN--- 234
GG G K NY L A A + G VL+L + + + EV + N+F+ N
Sbjct: 214 WKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQ-ITEVGTMNLFLYWINEDG 272
Query: 235 --IISTPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTG 285
++TP G IL G+TR+ I+++A G F+V ER + +D+L A E+F +G
Sbjct: 273 EEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSG 332
Query: 286 TAVVVAPVGSITYRGKRIEFKT---GAQSVSRELYSTLVGIQTGLIKDNKGWTV 336
TA VV PV I Y+G+ I T G + SR + S L IQ G ++ + WT+
Sbjct: 333 TACVVCPVSDILYKGETIHIPTMENGPKLASR-ILSKLTDIQYG--REERDWTI 383
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 157 bits (398), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 154/294 (52%), Gaps = 20/294 (6%)
Query: 59 LFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVP 118
LFEG+KA+R D ++ LF+P+ N R+ A R +P ++ ++ ++Q ++ WVP
Sbjct: 74 LFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVP 133
Query: 119 PPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRA 177
SLYIRP +G+ P LG+ + V SPVG YF G P++L+ ++ RA
Sbjct: 134 YSTSASLYIRPAFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRA 193
Query: 178 TPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN--- 234
GG G K NY L A + G VL+L + + + EV + N+F+ N
Sbjct: 194 WKGGTGDCKMGGNYGSSLFAQCEDVDNGCQQVLWLYGRDHQ-ITEVGTMNLFLYWINEDG 252
Query: 235 --IISTPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTG 285
++TP G IL G+TR+ I+++A G F+V ER + +D+L A E+F +G
Sbjct: 253 EEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFSSG 312
Query: 286 TAVVVAPVGSITYRGKRIEFKT---GAQSVSRELYSTLVGIQTGLIKDNKGWTV 336
TA VV PV I Y+G+ I T G + SR L S L IQ G ++ WT+
Sbjct: 313 TACVVCPVSDILYKGETIHIPTMENGPKLASRIL-SKLTDIQYG--REESDWTI 363
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 148/279 (53%), Gaps = 19/279 (6%)
Query: 47 KNIANHTISTQ-----GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQ 101
+N+ H S+ LFEGMKA++ +D Q+ LFRP N R+ A R+C+PS +
Sbjct: 57 QNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLE 116
Query: 102 FIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKE 161
++ +++ +K WVP SLY+RP+L+G+ P LG++ V PVG YF
Sbjct: 117 LLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPG 176
Query: 162 G-LAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNL 220
G + P++L + F RA GG G K NY P + A RG VL+L + + L
Sbjct: 177 GSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-L 235
Query: 221 EEVSSCNIFILKGN-----IISTPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDE 274
EV + NIF+ + + TP +G IL G+ R+S++++A G F+V ER I + +
Sbjct: 236 TEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQ 295
Query: 275 LLEA------DEVFCTGTAVVVAPVGSITYRGKRIEFKT 307
LL A EVF +GTA VAPV I Y+ + + T
Sbjct: 296 LLRALEEGRVREVFGSGTAAQVAPVHRILYKDRNLHIPT 334
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 148/279 (53%), Gaps = 19/279 (6%)
Query: 47 KNIANHTISTQ-----GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQ 101
+N+ H S+ LFEGMKA++ +D Q+ LFRP N R+ A R+C+PS +
Sbjct: 57 QNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLE 116
Query: 102 FIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKE 161
++ +++ +K WVP SLY+RP+L+G+ P LG++ V PVG YF
Sbjct: 117 LLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPG 176
Query: 162 G-LAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNL 220
G + P++L + F RA GG G K NY P + A RG VL+L + + L
Sbjct: 177 GSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-L 235
Query: 221 EEVSSCNIFILKGN-----IISTPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDE 274
EV + NIF+ + + TP +G IL G+ R+S++++A G F+V ER I + +
Sbjct: 236 TEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQ 295
Query: 275 LLEA------DEVFCTGTAVVVAPVGSITYRGKRIEFKT 307
LL A EVF +GTA VAPV I Y+ + + T
Sbjct: 296 LLRALEEGRVREVFGSGTACQVAPVHRILYKDRNLHIPT 334
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 147/279 (52%), Gaps = 19/279 (6%)
Query: 47 KNIANHTISTQ-----GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQ 101
+N+ H S+ LFEGMKA++ +D Q+ LFRP N R+ A R+C+PS +
Sbjct: 57 QNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLE 116
Query: 102 FIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKE 161
++ +++ +K WVP SLY+RP+L+G+ P LG++ V PVG YF
Sbjct: 117 LLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPG 176
Query: 162 G-LAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNL 220
G + P++L + F RA GG G K NY P + A RG VL+L + + L
Sbjct: 177 GSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-L 235
Query: 221 EEVSSCNIFILKGN-----IISTPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDE 274
EV + NIF+ + + TP +G IL G+ R+S++++A G F+V ER I + +
Sbjct: 236 TEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQ 295
Query: 275 LLEA------DEVFCTGTAVVVAPVGSITYRGKRIEFKT 307
LL A EVF +GTA V PV I Y+ + + T
Sbjct: 296 LLRALEEGRVREVFGSGTAAQVCPVHRILYKDRNLHIPT 334
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 147/279 (52%), Gaps = 19/279 (6%)
Query: 47 KNIANHTISTQ-----GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQ 101
+N+ H S+ LFEGMKA++ +D Q+ LFRP N R+ A R+C+PS +
Sbjct: 57 QNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLE 116
Query: 102 FIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKE 161
++ +++ +K WVP SLY+RP+L+G+ P LG++ V PVG YF
Sbjct: 117 LLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPG 176
Query: 162 G-LAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNL 220
G + P++L + F RA GG G K NY P + A RG VL+L + + L
Sbjct: 177 GSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-L 235
Query: 221 EEVSSCNIFILKGN-----IISTPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDE 274
EV + NIF+ + + TP +G IL G+ R+S++++A G F+V ER I + +
Sbjct: 236 TEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQ 295
Query: 275 LLEA------DEVFCTGTAVVVAPVGSITYRGKRIEFKT 307
LL A EVF +GTA V PV I Y+ + + T
Sbjct: 296 LLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPT 334
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 146/279 (52%), Gaps = 19/279 (6%)
Query: 47 KNIANHTISTQ-----GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQ 101
+N+ H S+ LFEGMKA++ +D Q+ LFRP N R+ A R+ +PS +
Sbjct: 57 QNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLXLPSFDKLE 116
Query: 102 FIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKE 161
++ +++ +K WVP SLY+RP+L+G+ P LG++ V PVG YF
Sbjct: 117 LLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPG 176
Query: 162 G-LAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNL 220
G + P++L + F RA GG G K NY P + A RG VL+L + + L
Sbjct: 177 GSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-L 235
Query: 221 EEVSSCNIFILKGN-----IISTPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDE 274
EV + NIF+ + + TP +G IL G+ R+S++++A G F+V ER I + +
Sbjct: 236 TEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQ 295
Query: 275 LLEA------DEVFCTGTAVVVAPVGSITYRGKRIEFKT 307
LL A EVF +GTA V PV I Y+ + + T
Sbjct: 296 LLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPT 334
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 145/279 (51%), Gaps = 19/279 (6%)
Query: 47 KNIANHTISTQ-----GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQ 101
+N+ H S+ LFEGMKA++ +D Q+ LFRP N R+ A R+ +PS +
Sbjct: 57 QNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLXLPSFDKLE 116
Query: 102 FIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKE 161
++ +++ +K WVP SL +RP+L+G+ P LG++ V PVG YF
Sbjct: 117 LLECIRRLIEVDKDWVPDAAGTSLXVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPG 176
Query: 162 G-LAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNL 220
G + P++L + F RA GG G K NY P + A RG VL+L + + L
Sbjct: 177 GSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-L 235
Query: 221 EEVSSCNIFILKGN-----IISTPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDE 274
EV + NIF+ + + TP +G IL G+ R+S++++A G F+V ER I + +
Sbjct: 236 TEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQ 295
Query: 275 LLEA------DEVFCTGTAVVVAPVGSITYRGKRIEFKT 307
LL A EVF +GTA V PV I Y+ + + T
Sbjct: 296 LLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPT 334
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 152/312 (48%), Gaps = 22/312 (7%)
Query: 36 FKLELVIFFKKK-NIANHTIST-QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMC 93
F E+V + K ++ +H + +FEG++ Y G +V FR ++ RL A+
Sbjct: 11 FNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV-FRHREHMQRLHDSAKIYR 69
Query: 94 MP-SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYT--FLV 150
P S SID+ ++A + N S YIRPL+ +G+ P Y+ ++
Sbjct: 70 FPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVII 122
Query: 151 FASPVGNYF-KEGLAPLNLYVEDEFHRATPGG-AGGVKAISNYAPVLKAISRAKNRGFSD 208
A P G Y E L + ++RA P KA NY L S A+ G+ +
Sbjct: 123 AAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQE 182
Query: 209 VLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEER 268
+ LD VN + E + N+F +K ++ TP + + L GITR +II++A + G +V E+
Sbjct: 183 GIALD-VNGY-ISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQ 240
Query: 269 AIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI-EFKTGAQSVSRELYSTLVGIQTGL 327
+ + L ADEVF +GTA + PV S+ G ++ E + G V++ + G+ TG
Sbjct: 241 VLSRESLYLADEVFMSGTAAEITPVRSVD--GIQVGEGRCG--PVTKRIQQAFFGLFTGE 296
Query: 328 IKDNKGWTVEIN 339
+D GW ++N
Sbjct: 297 TEDKWGWLDQVN 308
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 152/312 (48%), Gaps = 22/312 (7%)
Query: 36 FKLELVIFFKKK-NIANHTIST-QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMC 93
F E+V + K ++ +H + +FEG++ Y G +V FR ++ RL A+
Sbjct: 10 FNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV-FRHREHMQRLHDSAKIYR 68
Query: 94 MP-SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYT--FLV 150
P S SID+ ++A + N S YIRPL+ +G+ P Y+ ++
Sbjct: 69 FPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVII 121
Query: 151 FASPVGNYF-KEGLAPLNLYVEDEFHRATPGG-AGGVKAISNYAPVLKAISRAKNRGFSD 208
A P G Y E L + ++RA P KA NY L S A+ G+ +
Sbjct: 122 AAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQE 181
Query: 209 VLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEER 268
+ LD VN + E + N+F +K ++ TP + + L GITR +II++A + G +V E+
Sbjct: 182 GIALD-VNGY-ISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQ 239
Query: 269 AIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI-EFKTGAQSVSRELYSTLVGIQTGL 327
+ + L ADEVF +GTA + PV S+ G ++ E + G V++ + G+ TG
Sbjct: 240 VLSRESLYLADEVFMSGTAAEITPVRSVD--GIQVGEGRCG--PVTKRIQQAFFGLFTGE 295
Query: 328 IKDNKGWTVEIN 339
+D GW ++N
Sbjct: 296 TEDKWGWLDQVN 307
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 118/258 (45%), Gaps = 13/258 (5%)
Query: 46 KKNIANHTIS-TQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 104
K ++ HT+ G+FEG++AY+ DG +FR ++ RL A+ M P + ++
Sbjct: 44 KIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLE 103
Query: 105 AVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFAS-PVGNYF-KEG 162
A ++ + + S Y+RP++ LG++ + A+ P G Y +EG
Sbjct: 104 AAQRDVVRENKLE------SCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLGEEG 157
Query: 163 LAPLNLYVEDEFHRATPG-GAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLE 221
LA F R KA Y + A A G+ + L LD +
Sbjct: 158 LAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEATADGYDEALLLDV--DGYVS 215
Query: 222 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 281
E S N F++ + TP + + L GITR ++I +A + G +V E+ I DE+ ADE
Sbjct: 216 EGSGENFFLVNRGKLYTPDLA-SCLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEA 274
Query: 282 FCTGTAVVVAPVGSITYR 299
F TGTA V P+ + R
Sbjct: 275 FFTGTAAEVTPIRELDNR 292
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|2EIY|A Chain A, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|B Chain B, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|C Chain C, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EJ0|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ2|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ3|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
Length = 308
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 131/303 (43%), Gaps = 26/303 (8%)
Query: 46 KKNIANHTIST-QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFI 103
K ++ +H + +FEG++AY G +FR ++ R A+ + M P + ++
Sbjct: 21 KTSVLSHALHYGTSVFEGIRAYETAKGP-AIFRLKEHVKRFYNSAKVLRMEIPFAPEELE 79
Query: 104 DAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPE--YTFLVFASPVGNYF-K 160
+A+K+ N G S YIRPL LG+ P P +V A G Y +
Sbjct: 80 EAIKEVVRRN-------GYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGE 132
Query: 161 EGLAPLNLYVEDEFHR----ATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVN 216
E + + + R PG A K NY A A G + L LD
Sbjct: 133 EAVRKGARLITSSWARFPANVMPGKA---KVGGNYVNSALAKMEAVAAGADEALLLDE-- 187
Query: 217 KKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELL 276
+ + E S N+F ++ +I S L GITR S+I IA D G++V+ D+L
Sbjct: 188 EGYVAEGSGENLFFVRDGVIYALEHS-VNLEGITRDSVIRIAKDLGYEVQVVRATRDQLY 246
Query: 277 EADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTV 336
ADEVF TGTA V PV I +R K A V+ L + TG + +GW
Sbjct: 247 MADEVFMTGTAAEVTPVSMIDWRPIG---KGTAGPVALRLREVYLEAVTGRRPEYEGWLT 303
Query: 337 EIN 339
+N
Sbjct: 304 YVN 306
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
Length = 285
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 222 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 281
E S N+F++K + TP+ IL GITR+++I++A VEER + V EL EADE
Sbjct: 176 EGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEX 235
Query: 282 FCTGTAVVVAPV 293
F T T+ V PV
Sbjct: 236 FLTHTSAGVVPV 247
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 107/245 (43%), Gaps = 26/245 (10%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKR 115
G++E +K Y E +F +++ RL AE++ + P + D+F + + N+
Sbjct: 28 DGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL 82
Query: 116 WVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--VED 172
G +Y + + G+ P P ++ Y KE PL NL V+
Sbjct: 83 -----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGVKA 131
Query: 173 EFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIFIL 231
F +K+++ VL A A +G + +L+ ++ + E SS N+F +
Sbjct: 132 TFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTEGSSSNVFGI 186
Query: 232 KGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVA 291
K I+ T + IL GITR +I A++ V+E E L+ DE+F T T +
Sbjct: 187 KDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEIT 246
Query: 292 PVGSI 296
PV I
Sbjct: 247 PVIEI 251
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 107/245 (43%), Gaps = 26/245 (10%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKR 115
G++E +K Y E +F +++ RL AE++ + P + D+F + + N+
Sbjct: 28 DGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL 82
Query: 116 WVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--VED 172
G +Y + + G+ P P ++ Y KE PL NL V+
Sbjct: 83 -----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGVKA 131
Query: 173 EFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIFIL 231
F +K+++ VL A A +G + +L+ ++ + E SS N+F +
Sbjct: 132 TFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTEGSSSNVFGI 186
Query: 232 KGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVA 291
K I+ T + IL GITR +I A++ V+E E L+ DE+F T T +
Sbjct: 187 KDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEIT 246
Query: 292 PVGSI 296
PV I
Sbjct: 247 PVIEI 251
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 107/245 (43%), Gaps = 26/245 (10%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKR 115
G++E +K Y E +F +++ RL AE++ + P + D+F + + N+
Sbjct: 28 DGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL 82
Query: 116 WVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--VED 172
G +Y + + G+ P P ++ Y KE PL NL V+
Sbjct: 83 -----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGVKA 131
Query: 173 EFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIFIL 231
F +K+++ VL A A +G + +L+ ++ + E SS N+F +
Sbjct: 132 TFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTEGSSSNVFGI 186
Query: 232 KGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVA 291
K I+ T + IL GITR +I A++ V+E E L+ DE+F T T +
Sbjct: 187 KDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEIT 246
Query: 292 PVGSI 296
PV I
Sbjct: 247 PVIEI 251
>pdb|3SNO|A Chain A, Crystal Structure Of A Hypothetical Aminotransferase
(Ncgl2491) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.60 A Resolution
Length = 315
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 202 KNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDC 261
K+ GF DV++ D + E ++ + KG+ I TP+ G IL G T+ ++ A++
Sbjct: 201 KSNGFDDVIFTDG---DRVLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEK 257
Query: 262 GFQVEERAIPVDELLEADEVF 282
G++ +E+ + +D+L AD V+
Sbjct: 258 GWRCKEKDLSIDDLFGADSVW 278
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 106/245 (43%), Gaps = 26/245 (10%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKR 115
G++E +K Y E +F +++ RL AE++ + P + D+F + + N+
Sbjct: 28 DGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL 82
Query: 116 WVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--VED 172
G +Y + + G+ P P ++ Y KE PL NL V+
Sbjct: 83 -----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGVKA 131
Query: 173 EFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIFIL 231
F +K+++ VL A A +G + +L+ ++ K SS N+F +
Sbjct: 132 TFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNTVTKG----SSSNVFGI 186
Query: 232 KGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVA 291
K I+ T + IL GITR +I A++ V+E E L+ DE+F T T +
Sbjct: 187 KDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEIT 246
Query: 292 PVGSI 296
PV I
Sbjct: 247 PVIEI 251
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 106/245 (43%), Gaps = 26/245 (10%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKR 115
G++E +K Y E +F +++ RL AE++ + P + D+F + + N+
Sbjct: 28 DGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL 82
Query: 116 WVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--VED 172
G +Y + + G+ P P ++ Y KE PL NL V+
Sbjct: 83 -----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGVKA 131
Query: 173 EFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIFIL 231
F +K+++ VL A A +G + +L+ ++ + SS N+F +
Sbjct: 132 TFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTSGSSSNVFGI 186
Query: 232 KGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVA 291
K I+ T + IL GITR +I A++ V+E E L+ DE+F T T +
Sbjct: 187 KDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEIT 246
Query: 292 PVGSI 296
PV I
Sbjct: 247 PVIEI 251
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
pdb|3LUL|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
Length = 272
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 190 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGI 249
NY + A +A G D L+ ++ N ++ E + N+F+++ NI+ TP IL GI
Sbjct: 144 NYLEAIIAQRQAIAVGADDALFFNTEN--HVTETTCANLFLIENNILYTPRVEDGILPGI 201
Query: 250 TRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGT 286
TR +I V+E ++ + +AD VF T +
Sbjct: 202 TRARLISHCQQHKXSVQEISLTKKRIEDADAVFLTNS 238
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 106/245 (43%), Gaps = 26/245 (10%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKR 115
G++E +K Y E +F +++ RL AE++ + P + D+F + + N+
Sbjct: 28 DGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL 82
Query: 116 WVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--VED 172
G +Y + + G+ P P ++ Y KE PL NL V+
Sbjct: 83 -----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGVKA 131
Query: 173 EFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIFIL 231
F +K+++ VL A A +G + +L+ ++ + E SS N+F +
Sbjct: 132 TFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTEGSSSNVFGI 186
Query: 232 KGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVA 291
K I+ T + I GITR +I A++ V+E E L+ DE+F T T +
Sbjct: 187 KDGILYTHPANNMIAKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEIT 246
Query: 292 PVGSI 296
PV I
Sbjct: 247 PVIEI 251
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
pdb|1I2K|A Chain A, Aminodeoxychorismate Lyase From Escherichia Coli
pdb|1I2L|A Chain A, Deoxychorismate Lyase From Escherichia Coli With Inhibitor
Length = 269
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 183 GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATS 242
G+K ++ VL S + + L LDS + + E + N+F KGN++ TP
Sbjct: 137 AGIKHLNRLEQVLIR-SHLEQTNADEALVLDS--EGWVTECCAANLFWRKGNVVYTPRLD 193
Query: 243 GTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPV 293
+ GI R+ I + + +Q+ E ++E L+ADE+ + V PV
Sbjct: 194 QAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPV 244
>pdb|2Y4R|A Chain A, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
pdb|2Y4R|B Chain B, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
Length = 292
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 184 GVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSG 243
G+K ++ VL A + + G ++ L LD V+++ +E V S + +L G +++ P
Sbjct: 159 GLKHLNRLEQVL-ARAEWSDAGHAEGLMLD-VHERVVEGVFSNLLLVLDGTLVA-PDLRR 215
Query: 244 TILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 296
+AG+ R ++E A G + R + + EL ADEVF + + PV ++
Sbjct: 216 CGVAGVMRAELLERAEGIGVPLAIRDVSMAELATADEVFLCNSQFGIWPVRAL 268
>pdb|1JMS|A Chain A, Crystal Structure Of The Catalytic Core Of Murine Terminal
Deoxynucleotidyl Transferase
Length = 381
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 182 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNII----- 236
A VK IS YA + N+ F+D L + + N + E SC F+ +++
Sbjct: 15 APAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPF 74
Query: 237 ---STPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 284
S T G G KSIIE + G E +A+ DE ++ ++F +
Sbjct: 75 PITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTS 125
>pdb|1KDH|A Chain A, Binary Complex Of Murine Terminal Deoxynucleotidyl
Transferase With A Primer Single Stranded Dna
pdb|1KEJ|A Chain A, Crystal Structure Of Murine Terminal Deoxynucleotidyl
Transferase Complexed With Ddatp
Length = 363
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 186 KAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNII--------S 237
K IS YA + N+ F+D L + + N + E SC F+ +++ S
Sbjct: 1 KKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITS 60
Query: 238 TPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 284
T G G KSIIE + G E +A+ DE ++ ++F +
Sbjct: 61 MKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTS 107
>pdb|1USY|H Chain H, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
Length = 208
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 225 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 284
C I LKG++ P +AG++ +I ++ G ++E + + DE+F
Sbjct: 123 HCRIIPLKGSVELAP------IAGLS--DLIVDITETGRTLKENNLEI-----LDEIFVI 169
Query: 285 GTAVVVAPVGSITYRGKRIEFKTGAQSV 312
T VVV PV T R K + F Q V
Sbjct: 170 RTHVVVNPVSYRTKREKVVSFLEKLQEV 197
>pdb|3MPU|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|C Chain C, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|E Chain E, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3NPM|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked C6
Aspartate Transcarbamoylase Enzyme
Length = 310
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 208 DVLYLDSVNKKNLEEVSSCNI---FILKGNIISTPATSGTILAGITRKSIIEIASDC 261
D+LY+ V K+ L+ CN+ F+L+ + + + +L + R + EIA+D
Sbjct: 223 DILYMTRVQKERLDPSEYCNVKAQFVLRASDLHNAKANMKVLHPLPR--VDEIATDV 277
>pdb|2P5Z|X Chain X, The E. Coli C3393 Protein Is A Component Of The Type Vi
Secretion System And Exhibits Structural Similarity To
T4 Bacteriophage Tail Proteins Gp27 And Gp5
Length = 491
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 20 FSQIGFWQIRFTTSAKFKLELVIFFKKKNIANHTIST-----QGLFEG 62
S++G W RF T A+ K+E++ F+ ++ ++ GLF+G
Sbjct: 179 LSEVGIW-FRFATDARLKIEVIEFYDDQSGYERGLTLPLRHPSGLFDG 225
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 241 TSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEAD--EVFCTGTAVVVAP 292
T+ +LA R I E A + G + + I VDE ++ + VF TG A +AP
Sbjct: 261 TNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFATGDANGLAP 314
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 136 PILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGV 185
PI G+ P Y L P+G + + P VEDE + GG GV
Sbjct: 2 PIPGVMPIGNYVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGV 51
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 273 DELLEADEVFCTGTAVVVAPVGSI 296
+++LE D + C GT++ VAPV I
Sbjct: 389 EDILECDLLICIGTSLKVAPVSEI 412
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 273 DELLEADEVFCTGTAVVVAPVGSI 296
+++LE D + C GT++ VAPV I
Sbjct: 251 EDILECDLLICIGTSLKVAPVSEI 274
>pdb|1USY|E Chain E, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
pdb|1USY|F Chain F, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
pdb|1USY|G Chain G, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
Length = 208
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 225 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 284
C I LKG++ P +AG++ +I ++ G ++E + + DE+F
Sbjct: 123 HCRIIPLKGSVELAP------IAGLS--DLIVDITETGRTLKENNLEI-----LDEIFVI 169
Query: 285 GTAVVVAPVGSITYRGKRIEFKTGAQSV 312
T VVV PV T R + + F Q V
Sbjct: 170 RTHVVVNPVSYRTKREEVVSFLEKLQEV 197
>pdb|1J4T|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|B Chain B, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|C Chain C, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|D Chain D, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|E Chain E, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|F Chain F, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|G Chain G, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|H Chain H, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4U|A Chain A, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|B Chain B, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|C Chain C, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|D Chain D, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
Length = 149
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 166 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 225
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 226 CNIFILKGNIISTPATSGTILAGI 249
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
>pdb|1O64|A Chain A, Crystal Structure Of An Atp Phosphoribosyltransferase
pdb|1O64|B Chain B, Crystal Structure Of An Atp Phosphoribosyltransferase
Length = 219
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 226 CNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTG 285
C I LKG++ P +AG++ +I ++ G ++E + + DE+F
Sbjct: 125 CRIIPLKGSVELAP------IAGLS--DLIVDITETGRTLKENNLEI-----LDEIFVIR 171
Query: 286 TAVVVAPVGSITYRGKRIEFKTGAQSV 312
T VVV PV T R + + F Q V
Sbjct: 172 THVVVNPVSYRTKREEVVSFLEKLQEV 198
>pdb|1J4S|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|B Chain B, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|C Chain C, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|D Chain D, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
Length = 149
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 166 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 225
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 226 CNIFILKGNIISTPATSGTILAGI 249
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
>pdb|3OVK|A Chain A, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|B Chain B, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|C Chain C, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|D Chain D, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
Length = 132
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 245 ILAGITRKSIIEIASDCGFQVEERAIP---VDELLEADEVFCTG 285
+L +R +++ AS GF + E P V ELLEAD++ C G
Sbjct: 56 VLITDSRYTLLAKASVEGFDIIESRTPLKVVAELLEADQIDCLG 99
>pdb|1O63|A Chain A, Crystal Structure Of An Atp Phosphoribosyltransferase
pdb|1O63|B Chain B, Crystal Structure Of An Atp Phosphoribosyltransferase
Length = 219
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 226 CNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTG 285
C I LKG++ P +AG++ +I ++ G ++E + + DE+F
Sbjct: 125 CRIIPLKGSVELAP------IAGLS--DLIVDITETGRTLKENNLEI-----LDEIFVIR 171
Query: 286 TAVVVAPVGSITYRGKRIEFKTGAQSV 312
T VVV PV T R + + F Q V
Sbjct: 172 THVVVNPVSYRTKREEVVSFLEKLQEV 198
>pdb|1VBP|A Chain A, Crystal Structure Of Artocarpin-Mannopentose Complex
pdb|1VBP|B Chain B, Crystal Structure Of Artocarpin-Mannopentose Complex
Length = 149
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 166 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 225
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 226 CNIFILKGNIISTPATSGTILAGI 249
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
>pdb|1VBO|A Chain A, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|B Chain B, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|C Chain C, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|D Chain D, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|E Chain E, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|F Chain F, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|G Chain G, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|H Chain H, Crystal Structure Of Artocarpin-Mannotriose Complex
Length = 149
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 166 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 225
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 226 CNIFILKGNIISTPATSGTILAGI 249
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
>pdb|1DNV|A Chain A, Parvovirus (Densovirus) From Galleria Mellonella
Length = 437
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 228 IFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTA 287
IF L N+I P +GT ++ + + C ++ + +P+ ++ G+
Sbjct: 47 IFGLANNVIG-PTGTGTT-------AVNRLLTTCLAEIPWQKLPLYMNQSEFDLLPPGSR 98
Query: 288 VVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVE 337
VV V + +R RI F+T + + + + +QT + + GW +
Sbjct: 99 VVECNV-KVIFRTNRIAFETSSTVTKQATLNQISNVQTAIGLNKLGWGIN 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,972,027
Number of Sequences: 62578
Number of extensions: 425328
Number of successful extensions: 951
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 876
Number of HSP's gapped (non-prelim): 47
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)