RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019527
(339 letters)
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 423 bits (1090), Expect = e-149
Identities = 117/295 (39%), Positives = 177/295 (60%), Gaps = 12/295 (4%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
Q +FEG+KAYR DG +V FRP+ NA RLQ+ A R+ +P + FI++++Q +++W
Sbjct: 78 QEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKW 137
Query: 117 VPP-PGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFH 175
VPP G+ SLY+RP ++ + P LG+ P+ EY +L+ ASP G YFK G+ P+++++ E+
Sbjct: 138 VPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYV 197
Query: 176 RATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNI 235
RA+PGG G K NYA L A ++A G V++LD++ ++ +EE+ N+F + G+
Sbjct: 198 RASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSG 257
Query: 236 ----ISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEA------DEVFCTG 285
+ TP SG++L GITR S++++A+D GF VEER I VDE + EVF G
Sbjct: 258 GSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACG 317
Query: 286 TAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 339
TA V+ PV + + G ++ L TL GIQ G D GW +N
Sbjct: 318 TAAVITPVSHVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 372
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 401 bits (1032), Expect = e-140
Identities = 100/297 (33%), Positives = 149/297 (50%), Gaps = 18/297 (6%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
LFEGMKA++ +D Q+ LFRP N R+ A R+C+PS + ++ +++ +K W
Sbjct: 72 LQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDW 131
Query: 117 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFH 175
VP SLY+RP+L+G+ P LG++ V PVG YF G + P++L + F
Sbjct: 132 VPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFI 191
Query: 176 RATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNI 235
RA GG G K NY P + A RG VL+L + + L EV + NIF+ +
Sbjct: 192 RAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHE 250
Query: 236 -----ISTPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFC 283
+ TP +G IL G+ R+S++++A G F+V ER I + +LL A EVF
Sbjct: 251 DGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFG 310
Query: 284 TGTAVVVAPVGSITYRGKRIEFKTGAQ--SVSRELYSTLVGIQTGLIKDNKGWTVEI 338
+GTA V PV I Y+ + + T + L IQ G+ W +
Sbjct: 311 SGTACQVCPVHRILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRAH--EWMFPV 365
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 398 bits (1026), Expect = e-139
Identities = 99/298 (33%), Positives = 154/298 (51%), Gaps = 18/298 (6%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
LFEG+KA+R D ++ LF+P+ N R+ A R +P ++ ++ ++Q ++ W
Sbjct: 92 VELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEW 151
Query: 117 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFH 175
VP SLYIRP +G+ P LG+ + V SPVG YF G P++L+ ++
Sbjct: 152 VPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYV 211
Query: 176 RATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNI 235
RA GG G K NY L A A + G VL+L + + + EV + N+F+ N
Sbjct: 212 RAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQ-ITEVGTMNLFLYWINE 270
Query: 236 -----ISTPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFC 283
++TP G IL G+TR+ I+++A G F+V ER + +D+L A E+F
Sbjct: 271 DGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFG 330
Query: 284 TGTAVVVAPVGSITYRGKRIEFKTGAQ--SVSRELYSTLVGIQTGLIKDNKGWTVEIN 339
+GTA VV PV I Y+G+ I T ++ + S L IQ G + WT+ ++
Sbjct: 331 SGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREER--DWTIVLS 386
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 164 bits (417), Expect = 1e-48
Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 32/258 (12%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWV 117
G+FE + DG ++ R + A + +P P ++ + A + + W
Sbjct: 48 GIFETLLIR---DGHA--CNVRRHGERFKASAALLGLPEPILEDWEKATQMGI---ESWY 99
Query: 118 PPPGKGSLYIRPLL-VGSGPILGLAPAP--------------EYTFLVFASPVGNYFKEG 162
P G L G GLA E+ V S G G
Sbjct: 100 SHPNAGEASCTWTLSRGRSS-TGLASGWLTITPVSSDKLAQREHGVSVMTSSRGYSIDTG 158
Query: 163 LAPLNLYVEDEFHRAT----PGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKK 218
L + E + P G K + YA + A+ AK+ GF DV++ D
Sbjct: 159 LPGIGKATRGELSKVERTPAPWLTVGAKTL-AYAANMAALRYAKSNGFDDVIFTDG---D 214
Query: 219 NLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEA 278
+ E ++ + KG+ I TP+ G IL G T+ ++ A++ G++ +E+ + +D+L A
Sbjct: 215 RVLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKGWRCKEKDLSIDDLFGA 274
Query: 279 DEVFCTGTAVVVAPVGSI 296
D V+ + V +
Sbjct: 275 DSVWLVSSVRGPVRVTRL 292
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 162 bits (412), Expect = 1e-47
Identities = 85/290 (29%), Positives = 137/290 (47%), Gaps = 24/290 (8%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRW 116
+FEG++ Y G +V FR ++ RL A+ P SID+ ++A + N
Sbjct: 35 SVFEGIRCYDSHKGPVV-FRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIRKN--- 90
Query: 117 VPPPGKGSLYIRPLL-VGSGPILGLAPAPEYT--FLVFASPVGNYFKEGL--APLNLYVE 171
S YIRPL+ VG +G+ P Y+ ++ A P G Y ++ V
Sbjct: 91 ----NLTSAYIRPLIFVGDVG-MGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVS 145
Query: 172 DEFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFI 230
++RA P KA NY L S A+ G+ + + LD + E + N+F
Sbjct: 146 S-WNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDV--NGYISEGAGENLFE 202
Query: 231 LKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVV 290
+K ++ TP + + L GITR +II++A + G +V E+ + + L ADEVF +GTA +
Sbjct: 203 VKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEI 262
Query: 291 APVGSITYRGKRIEFKTGAQ-SVSRELYSTLVGIQTGLIKDNKGWTVEIN 339
PV S+ I+ G V++ + G+ TG +D GW ++N
Sbjct: 263 TPVRSV----DGIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQVN 308
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 159 bits (404), Expect = 1e-46
Identities = 85/290 (29%), Positives = 121/290 (41%), Gaps = 25/290 (8%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRW 116
+FEG++AY G + FR ++ R A+ + M P + ++ +A+K+ N
Sbjct: 34 SVFEGIRAYETAKGPAI-FRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVRRN--- 89
Query: 117 VPPPGKGSLYIRPLL-VGSGPILGLAPAPEY--TFLVFASPVGNYFKEGL--APLNLYVE 171
G S YIRPL +G+ LG+ P P +V A G Y E L
Sbjct: 90 ----GYRSCYIRPLAWMGAKA-LGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITS 144
Query: 172 DEFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFI 230
+ R G K NY A A G + L LD + + E S N+F
Sbjct: 145 S-WARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDE--EGYVAEGSGENLFF 201
Query: 231 LKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVV 290
++ +I S L GITR S+I IA D G++V+ D+L ADEVF TGTA V
Sbjct: 202 VRDGVIYALEHSV-NLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEV 260
Query: 291 APVGSITYRGKRIEFKTGAQ-SVSRELYSTLVGIQTGLIKDNKGWTVEIN 339
PV I G V+ L + TG + +GW +N
Sbjct: 261 TPVSMI----DWRPIGKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 158 bits (401), Expect = 5e-46
Identities = 77/284 (27%), Positives = 120/284 (42%), Gaps = 23/284 (8%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRW 116
G+FEG++AY+ DG +FR ++ RL A+ M P + A + NK
Sbjct: 57 GVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDVVRENKL- 115
Query: 117 VPPPGKGSLYIRPLL-VGSGPILGLAPAP-EYTFLVFASPVGNYFKEGL--APLNLYVED 172
S Y+RP++ +GS LG++ + A P G Y E + +
Sbjct: 116 ------ESCYLRPIIWIGSEK-LGVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTSS 168
Query: 173 EFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL 231
F R + KA Y + A A G+ + L LD + E S N F++
Sbjct: 169 -FTRHHVNVSMVRAKASGWYVNSILANQEATADGYDEALLLDV--DGYVSEGSGENFFLV 225
Query: 232 KGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVA 291
+ TP + L GITR ++I +A + G +V E+ I DE+ ADE F TGTA V
Sbjct: 226 NRGKLYTPDLAS-CLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAFFTGTAAEVT 284
Query: 292 PVGSITYRGKRIEFKTGAQ-SVSRELYSTLVGIQTGLIKDNKGW 334
P+ + GA+ ++ +L S + G + W
Sbjct: 285 PIREL----DNRTIGGGARGPITEKLQSAFFDVVNGKSAKHADW 324
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 154 bits (391), Expect = 4e-45
Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 26/243 (10%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRW 116
GLFE ++ + + RL A ++ +P S D + + + Q +
Sbjct: 28 GLFETIRVN---SSKP--SFAYMHWERLGNSARQLGIPFEISFDDWFEHLIQKIQKDNL- 81
Query: 117 VPPPGKGSLYIRPLL-VGSGPILGLAPAPEYTFLVFAS-PVGNYFKEGLAPLNLYVEDEF 174
I+ +L G GLA + + L+F + P+ L +
Sbjct: 82 ------YHGGIKAILSGGPAS-RGLAERGQVSQLIFQTFNYSIQKH----PVRLISI-NW 129
Query: 175 HRATPGGAGGVKAISNYAP-VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKG 233
R +K++ NY ++ A +A G D L+ ++ N ++ E + N+F+++
Sbjct: 130 LRDKANPLYQLKSV-NYLEAII-AQRQAIAVGADDALFFNTEN--HVTETTCANLFLIEN 185
Query: 234 NIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPV 293
NI+ TP IL GITR +I V+E ++ + +AD VF T + + V
Sbjct: 186 NILYTPRVEDGILPGITRARLISHCQQHKMSVQEISLTKKRIEDADAVFLTNSLQGIRRV 245
Query: 294 GSI 296
S+
Sbjct: 246 LSL 248
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 151 bits (385), Expect = 3e-44
Identities = 50/252 (19%), Positives = 95/252 (37%), Gaps = 29/252 (11%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWV 117
G F + DG++ L + RLQ +R+ + Q +K A +
Sbjct: 24 GCFTTARVI---DGKVSLL--SAHIQRLQDACQRLMISCDFWPQLEQEMKTLAAEQQ--- 75
Query: 118 PPPGKGSLYIRPLLV--GSGPILGLAPAPEY--TFLVFASPVGNYFKEGLA-PLNLYVED 172
+ ++ +++ GSG G + T ++ + ++ + L +
Sbjct: 76 ------NGVLK-VVISRGSGG-RGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSP 127
Query: 173 EFHRATPGGAGGVKAISNYAP-VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL 231
G+K + N VL S + + L LDS + + E + N+F
Sbjct: 128 -VRLGRNPHLAGIKHL-NRLEQVL-IRSHLEQTNADEALVLDS--EGWVTECCAANLFWR 182
Query: 232 KGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVA 291
KGN++ TP + GI R+ I + + +Q+ E ++E L+ADE+ + V
Sbjct: 183 KGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVM 242
Query: 292 PVGSITYRGKRI 303
PV +
Sbjct: 243 PVCAC--GDVSF 252
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 148 bits (377), Expect = 7e-43
Identities = 50/244 (20%), Positives = 88/244 (36%), Gaps = 26/244 (10%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWV 117
GLFE + G +++ RL+ G R+ +P + A
Sbjct: 46 GLFETLAVR---AGTP--RLLERHLARLEEGCRRLAIP-LDTAALRQELLAFCAALG--- 96
Query: 118 PPPGKGSLYIRPLL-VGSGPILGLAPA--PEYTFLVFASPVGNYFKEGLA-PLNLYVEDE 173
+ ++ G G G AP ++ SP Y + + L+
Sbjct: 97 ------DGVAKLIVTRGEGL-RGYAPPAEASPRRILSGSPRPAYPERHWQQGVRLFAC-R 148
Query: 174 FHRATPGGAGGVKAISNYAP-VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK 232
A G+K + N VL A + + G ++ L LD + E N+ ++
Sbjct: 149 TRLAEQPLLAGLKHL-NRLEQVL-ARAEWSDAGHAEGLMLDVHE--RVVEGVFSNLLLVL 204
Query: 233 GNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAP 292
+ P +AG+ R ++E A G + R + + EL ADEVF + + P
Sbjct: 205 DGTLVAPDLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELATADEVFLCNSQFGIWP 264
Query: 293 VGSI 296
V ++
Sbjct: 265 VRAL 268
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 139 bits (352), Expect = 3e-39
Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 35/242 (14%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRW 116
++E ++ Y F ++ RL+ A+ +P S D+F +K A K+
Sbjct: 41 AVYETLRTY---SRAP--FAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGADEFKQ- 94
Query: 117 VPPPGKGSLYIRPLL-VGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFH 175
+ I+ L SG +L SP+ E + + +
Sbjct: 95 -------EVRIKVYLFPDSGEVL-----------FVFSPLNIPDLE--TGVEVKIS-NVR 133
Query: 176 RATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN 234
R +K + ++R + DV+ L + E S N+F++K
Sbjct: 134 RIPDLSTPPALKI-TGR--TDIVLARREIVDCYDVILLGLNG--QVCEGSFSNVFLVKEG 188
Query: 235 IISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVG 294
+ TP+ IL GITR+++I++A VEER + V EL EADE+F T T+ V PV
Sbjct: 189 KLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEMFLTHTSAGVVPVR 248
Query: 295 SI 296
+
Sbjct: 249 RL 250
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 132 bits (336), Expect = 6e-37
Identities = 58/257 (22%), Positives = 95/257 (36%), Gaps = 52/257 (20%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRW 116
G++E +K Y +G++ F +++ RL AE++ + P + D+F + + N
Sbjct: 29 GVYEVVKVY---NGEM--FTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN--- 80
Query: 117 VPPPGKGSLYIRPLL-VGSGPILGLA-PAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEF 174
+ +I + G+ P P ++ N
Sbjct: 81 ----ELNTGHIYFQVTRGTSP-RAHQFPENTVKPVIIGYTKENPRPL------------- 122
Query: 175 HRATPGGAGGVKAIS--------------NY-APVLKAISRAKNRGFSDVLYLDSVNKKN 219
GVKA N VL A A +G + + L
Sbjct: 123 ----ENLEKGVKATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAI-LHR--NNT 174
Query: 220 LEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEAD 279
+ E SS N+F +K I+ T + IL GITR +I A++ V+E E L+ D
Sbjct: 175 VTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMD 234
Query: 280 EVFCTGTAVVVAPVGSI 296
E+F T T + PV I
Sbjct: 235 ELFVTSTTSEITPVIEI 251
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 128 bits (325), Expect = 1e-35
Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 39/242 (16%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWV 117
+F ++A G+ +++ RL+ A + + P + F++ ++ A +
Sbjct: 23 SVFTTLRAE---GGRP--LWLEEHLARLRRHALALGLSYPGDEAFLEDLEALLRAFPK-- 75
Query: 118 PPPGKGSLYIRPLL-VGSGP-ILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFH 175
+ +R VG G + P P+ Y +EG+ + + +
Sbjct: 76 ------APCLRLRFTVGEGVRLSEARPYAPL-------PLSLY-REGV---RVRLTG--Y 116
Query: 176 RATPGGAGGVKAISNYAP-VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN 234
R P A K NY P L A+ A+ G + L LD+ ++ + S + + +
Sbjct: 117 RVHPDLAR-YKT-GNYLPYRL-ALEEARKEGAFEGLLLDAFG--HVVDGSRTSPLLFREG 171
Query: 235 IISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVG 294
+ L GITR+ + E A G +VE + L + G+ V + PV
Sbjct: 172 TLYLLEG---GLEGITREKVAEAARGLGLRVERGLFRPEGL--RGHLLLAGSGVGLLPVR 226
Query: 295 SI 296
Sbjct: 227 PP 228
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 107 bits (270), Expect = 5e-28
Identities = 42/240 (17%), Positives = 71/240 (29%), Gaps = 36/240 (15%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWV 117
L E M+ G L A RL A + Q I V AL R
Sbjct: 17 ELIETMRWQ---PGTSFLRFDRHLA-RLYGSAAELGFACD--PQRIAEVLSDALDGAR-- 68
Query: 118 PPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRA 177
++ R L + + P + LA
Sbjct: 69 -----TAMRTR-LALARNGDATASAQP-----YEPLAADKVWILRLART--------RLD 109
Query: 178 TPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-II 236
+ K S A S +VL + + + E + N+F G+ ++
Sbjct: 110 SQNTLLRHKT-SRRQLYTHARSEYLVTQADEVLLANE--RGEICEGTITNVFADFGDGVL 166
Query: 237 STPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 296
+TP +L G+ R +++ + EE D+L A +F + + P +
Sbjct: 167 ATPRLDCGLLPGVLRAELLDEG-----RAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 221
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for
structural genomics, protein structure initiative,
PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Length = 194
Score = 75.5 bits (186), Expect = 2e-16
Identities = 28/233 (12%), Positives = 64/233 (27%), Gaps = 54/233 (23%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFI-DAVKQTALANKRW 116
LFE + E GQ + R + + + + +
Sbjct: 6 PLFETILI---EQGQAKNI--SYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHTALFT-- 58
Query: 117 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTF----LVFASPVGNYFKEGLAPLNLYVED 172
+G + R +L P + + VF + K
Sbjct: 59 ---HREGLIRCRIDYNHHDYVLQCFPYQQKVYRTFKPVFCDHIDYSLK------------ 103
Query: 173 EFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK 232
+ +L + + +++ + + + + S N+ +
Sbjct: 104 ----------------FSDRTLLNNL-LKQKEECDEIMI---IRQGKVTDCSIGNLIFRQ 143
Query: 233 GNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTG 285
N TP +L G R ++E ++ R I ++L + +E+
Sbjct: 144 NNQWITPDKP--LLEGTQRAKLLEQ-----KKIIAREIFFEDLAQYEEIRLIN 189
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 4e-07
Identities = 44/219 (20%), Positives = 68/219 (31%), Gaps = 73/219 (33%)
Query: 128 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK-EGLAPLNLYVEDEFHR----ATPGGA 182
RPL + G + E+ LV P ++F L +++F++ T G A
Sbjct: 7 RPLTLSHGSL-------EHVLLV---PTASFFIASQL-------QEQFNKILPEPTEGFA 49
Query: 183 GGVKAISN---YAPVLKAISRAKNRG----FSDVLYLDSVNKKNLEEVSSCNIFILKGNI 235
+ + L +S F VL L E +C L+GN
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL------NLCLTEFENC---YLEGND 100
Query: 236 I-----STPATSGTILAGITRKSIIEI---ASDCGFQVEERAIPVDELLEADEVFCTGTA 287
I + T L K +I+ A + ++ L A G A
Sbjct: 101 IHALAAKLLQENDTTLV--KTKELIKNYITARIMAKRPFDKKSN-SALFRAVG---EGNA 154
Query: 288 VVVAPVGSITYRGKRIEFKTGAQSVS-------RELYST 319
+VA F G Q + R+LY T
Sbjct: 155 QLVA------------IF--GGQGNTDDYFEELRDLYQT 179
Score = 35.8 bits (82), Expect = 0.022
Identities = 45/223 (20%), Positives = 67/223 (30%), Gaps = 80/223 (35%)
Query: 37 KLELVIFFKKKNIANHTISTQ--------GLFEGMKAYRKEDGQLVLFRPDQ-------- 80
F +K + + T TQ FE +K G L D
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK----SKG---LIPADATFAGHSLG 1765
Query: 81 --NAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG-SLY----IRPLLVG 133
A L + A+ M SI+ ++ V + + VP G S Y I P V
Sbjct: 1766 EYAA--LASLADVM-----SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 134 SGPILGLAP--------APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGG---- 181
+ +LV V NY N
Sbjct: 1819 AS--FSQEALQYVVERVGKRTGWLV--EIV-NY--------N----------VENQQYVA 1855
Query: 182 AGGVKAISNYAPVLKAISRAKNRGFSDVLYL-DSVNKKNLEEV 223
AG ++A+ VL I + + D++ L S+ +LEEV
Sbjct: 1856 AGDLRALDTVTNVLNFI-KLQK---IDIIELQKSL---SLEEV 1891
Score = 33.5 bits (76), Expect = 0.10
Identities = 39/220 (17%), Positives = 71/220 (32%), Gaps = 62/220 (28%)
Query: 157 NYFKE--GLAPLNLYVEDEFHRAT--PGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYL 212
N+FK+ G + L++ V + T GG G + NY+ ++ +
Sbjct: 1651 NHFKDTYGFSILDI-VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF-- 1707
Query: 213 DSVNKKNLEEVSSCNIFIL-KGNIIST----PA---TSGTILAGITRKSII--------- 255
K + E S+ F KG + +T PA + K +I
Sbjct: 1708 -----KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Query: 256 ---E---IASDCG---FQ-----VEERAIPVDELLEADEVFCTGTAVV-VAPVGSITYRG 300
E +AS + V R + + + DE+ + ++ + P G +
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP-GRVAASF 1821
Query: 301 KRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEI-N 339
+ + + V + GW VEI N
Sbjct: 1822 SQEALQYVVERVGKR----------------TGWLVEIVN 1845
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.038
Identities = 41/294 (13%), Positives = 83/294 (28%), Gaps = 91/294 (30%)
Query: 10 FSNWKLYMI---------SFSQIGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLF 60
+ NWK S + + + R F L +F +I +S ++
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYR----KMFD-RLSVFPPSAHIPTILLSL--IW 396
Query: 61 EGMKAYRKED-------GQLVLFRPDQNAIRLQTGAERMCMPSPSI----DQFIDAVKQT 109
+ LV +P ++ I + + + + + +D
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 110 -ALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVF-ASPVGNYFKEGLAPLN 167
+ +PP Y Y+ + + + + L
Sbjct: 457 KTFDSDDLIPPYLDQ--YF------------------YSHIGHHLKNIEHPERMTLFR-M 495
Query: 168 LYVEDEF------HRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLD--SVNKKN 219
++++ F H +T A G +L + + K Y N
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASG--------SILNTLQQLKF-------YKPYICDNDPK 540
Query: 220 LEE-VSSCNIFILK--GNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAI 270
E V++ F+ K N+I + T ++ IA E+ AI
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYT-----------DLLRIA----LMAEDEAI 579
Score = 29.8 bits (66), Expect = 1.6
Identities = 23/142 (16%), Positives = 40/142 (28%), Gaps = 23/142 (16%)
Query: 117 VPPPGKGSLYIRPLLVGSGP-----ILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVE 171
G+L + L+ + Y FL SP+ ++ +Y+E
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL--MSPIKTEQRQPSMMTRMYIE 114
Query: 172 --DEFHRA----TPGGAGGVKAISNYAPVLKAISRAKN------RGF--SDVLYLDSVNK 217
D + ++ L + AKN G + + LD
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALDVCLS 173
Query: 218 KNLEEVSSCNIFILK-GNIIST 238
++ IF L N S
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSP 195
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.5 bits (76), Expect = 0.060
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 15/59 (25%)
Query: 217 KKNLEEVSSC-NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDE 274
NL V +C + I+ + G + + + CG + ++ + D
Sbjct: 15 GPNLNIVLTCPECKVYPPKIVERFS-EGDV-----------VCALCGLVLSDKLV--DT 59
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.16
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 20/46 (43%)
Query: 64 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQT 109
+A +K L L+ D +P++ A+K T
Sbjct: 20 QALKKLQASLKLYADDS---------------APAL-----AIKAT 45
Score = 27.6 bits (60), Expect = 3.8
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 10/32 (31%)
Query: 160 KEGL----APLNLYVEDEFHRATPGGAGGVKA 187
K+ L A L LY +D + P A +KA
Sbjct: 19 KQALKKLQASLKLYADD----SAP--ALAIKA 44
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold,
beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio
vulgaris subsp} PDB: 2z1t_A*
Length = 343
Score = 31.9 bits (73), Expect = 0.24
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 16/64 (25%)
Query: 240 ATSGTILAGITRKSIIEIA--SDCGFQVEERAIPVD-------ELLEAD--EVFCTGTAV 288
T G + + EIA S V E A+PV L D + G +
Sbjct: 221 PTRGGLATTLN-----EIAGQSQAVCHVLETAVPVRESVRNGCSFLGLDPLYLANEGKLI 275
Query: 289 VVAP 292
+ P
Sbjct: 276 CILP 279
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer,
maturation of [NIFE]-hydroge nitrIle synthesis, iron;
2.56A {Thermoanaerobacter tengcongensis}
Length = 314
Score = 31.8 bits (73), Expect = 0.30
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 16/64 (25%)
Query: 240 ATSGTILAGITRKSIIEIA--SDCGFQVEERAIPVD-------ELLEAD--EVFCTGTAV 288
T G + + EI+ S G ++ E +PV E + D + G V
Sbjct: 200 PTRGGVAEVL-----YEISKMSGVGIKIYEEKLPVKESVKSACEFMGIDFLHLANEGKVV 254
Query: 289 VVAP 292
VV
Sbjct: 255 VVVE 258
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing
proteins); PSI-2, midwest center for structural
genomics; 1.65A {Chromobacterium violaceum}
Length = 113
Score = 29.8 bits (68), Expect = 0.45
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 250 TRKSIIEIASDCGF 263
T KSI++I CGF
Sbjct: 71 TSKSIVQIGLACGF 84
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY
crystallography, structural genomics, BSGI; 2.00A
{Escherichia coli O157} PDB: 2i6r_A
Length = 334
Score = 31.1 bits (71), Expect = 0.48
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 16/64 (25%)
Query: 240 ATSGTILAGITRKSIIEIA--SDCGFQVEERAIPVD-------ELLEAD--EVFCTGTAV 288
AT G + A + E A CG ++ E A+PV ELL D G V
Sbjct: 220 ATRGGVNAVVH-----EFAAACGCGIEISESALPVKPAVRGVCELLGLDALNFANEGKLV 274
Query: 289 VVAP 292
+
Sbjct: 275 IAVE 278
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase
maturation, ATPase, transferase; 1.55A {Thermococcus
kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Length = 338
Score = 30.7 bits (70), Expect = 0.61
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 11/48 (22%)
Query: 256 EIA--SDCGFQVEERAIPVD-------ELLEAD--EVFCTGTAVVVAP 292
EIA S+ G V E IP+ E+L +V G V+V
Sbjct: 233 EIARKSNVGILVREADIPIRPEVRAASEMLGISPYDVANEGKVVMVVA 280
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'-
D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP
*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator;
HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8
PDB: 1xs9_A
Length = 129
Score = 28.4 bits (64), Expect = 1.5
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 250 TRKSIIEIASDCGFQ 264
+ + I+ +A GF+
Sbjct: 75 SNEPILYLAERYGFE 89
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B),
unknown function; 2.20A {Thermus thermophilus}
Length = 116
Score = 27.8 bits (61), Expect = 2.6
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 120 PGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATP 179
PG G+LY+ P + GP L A +VF P+ + L + YV+
Sbjct: 16 PGLGTLYVDPSTLPEGPFLAYDRAGNLVKVVFMVPL-----KKLNESHKYVDIGTKTLRA 70
Query: 180 GGAGGVKAISNY 191
G + ++
Sbjct: 71 LGITRIDHVNMI 82
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 28.0 bits (63), Expect = 4.4
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 215 VNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDE 274
VN++ +++ NI + KG + S I G+TRK +I + E
Sbjct: 335 VNEERMKK----NIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLE 390
Query: 275 LLEADE 280
L DE
Sbjct: 391 YLLEDE 396
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 28.1 bits (63), Expect = 4.7
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 215 VNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDE 274
V +N++ N+ G I S I G+ R+ +I + E + E
Sbjct: 347 VYPENMKR----NMTRTYGLIYSQRVMLTLIDKGMVREEAYDIVQPKAMEAWETQVQFKE 402
Query: 275 LLEADE 280
L+EADE
Sbjct: 403 LVEADE 408
>3mn2_A Probable ARAC family transcriptional regulator; structural
genomics, PSI-2, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 108
Score = 26.8 bits (60), Expect = 5.1
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 246 LAGITRKSIIEIASDCGF 263
G T ++ A CGF
Sbjct: 64 SDGATPTTVTAAALSCGF 81
>1d5y_A ROB transcription factor; protein-DNA complex, DNA,
transcription/DNA complex; HET: DNA; 2.70A {Escherichia
coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Length = 292
Score = 27.1 bits (60), Expect = 8.9
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 250 TRKSIIEIASDCGFQ 264
T + I++IA F
Sbjct: 67 TARPILDIALQYRFD 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.401
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,208,886
Number of extensions: 321879
Number of successful extensions: 699
Number of sequences better than 10.0: 1
Number of HSP's gapped: 652
Number of HSP's successfully gapped: 39
Length of query: 339
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 245
Effective length of database: 4,077,219
Effective search space: 998918655
Effective search space used: 998918655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)