RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019527
(339 letters)
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
aminotransferase {Human (Homo sapiens), mitochondrial
[TaxId: 9606]}
Length = 363
Score = 192 bits (488), Expect = 4e-59
Identities = 94/296 (31%), Positives = 140/296 (47%), Gaps = 16/296 (5%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
LFEGMKA++ +D Q+ LFRP N R+ A R+C+PS + ++ +++ +K W
Sbjct: 70 LQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDW 129
Query: 117 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK-EGLAPLNLYVEDEFH 175
VP SLY+RP+L+G+ P LG++ V PVG YF + P++L + F
Sbjct: 130 VPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFI 189
Query: 176 RATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN- 234
RA GG G K NY P + A RG VL+L + + E +
Sbjct: 190 RAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHED 249
Query: 235 ---IISTPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCT 284
+ TP +G IL G+ R+S++++A G F+V ER I + +LL A EVF +
Sbjct: 250 GVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGS 309
Query: 285 GTAVVVAPVGSITYRGKRIEFKTGAQ--SVSRELYSTLVGIQTGLIKDNKGWTVEI 338
GTA V PV I Y+ + + T + L IQ G W +
Sbjct: 310 GTACQVCPVHRILYKDRNLHIPTMENGPELILRFQKELKEIQYG--IRAHEWMFPV 363
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 164 bits (416), Expect = 4e-49
Identities = 77/288 (26%), Positives = 130/288 (45%), Gaps = 18/288 (6%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
+FEG++ Y G V+FR ++ RL A+ P + A +
Sbjct: 30 TSVFEGIRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFPVSQSIDELME------ACRDV 82
Query: 117 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTF--LVFASPVGNYFKEGLAPLNL-YVEDE 173
+ S YIRPL+ +G+ P Y+ ++ A P G Y + +
Sbjct: 83 IRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSS 142
Query: 174 FHRATPGGAGGVKAIS-NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK 232
++RA P NY L S A+ G+ + + LD + E + N+F +K
Sbjct: 143 WNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALD--VNGYISEGAGENLFEVK 200
Query: 233 GNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAP 292
++ TP + + L GITR +II++A + G +V E+ + + L ADEVF +GTA + P
Sbjct: 201 DGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITP 260
Query: 293 VGSITYRGKRI-EFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 339
V S+ G ++ E + G V++ + G+ TG +D GW ++N
Sbjct: 261 VRSV--DGIQVGEGRCG--PVTKRIQQAFFGLFTGETEDKWGWLDQVN 304
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 99.3 bits (246), Expect = 1e-24
Identities = 58/263 (22%), Positives = 96/263 (36%), Gaps = 23/263 (8%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFI-DAVKQTALANKR 115
G++E +K Y E +F +++ RL AE++ + P + + N+
Sbjct: 28 DGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL 82
Query: 116 WVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFH 175
G +Y + S ++ + E L E
Sbjct: 83 N-----TGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVEDI 137
Query: 176 RATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNI 235
R + N + A A +G + + + E SS N+F +K I
Sbjct: 138 RWLRCDIKSL----NLLGAVLAKQEAHEKGCYEAILHR---NNTVTEGSSSNVFGIKDGI 190
Query: 236 ISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGS 295
+ T + IL GITR +I A++ V+E E L+ DE+F T T + PV
Sbjct: 191 LYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEITPVIE 250
Query: 296 ITYRGKRI-EFKTGAQSVSRELY 317
I GK I + K G +R+L
Sbjct: 251 I--DGKLIRDGKVG--EWTRKLQ 269
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
[TaxId: 562]}
Length = 269
Score = 94.0 bits (232), Expect = 6e-23
Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 15/240 (6%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
G F + DG++ + RLQ +R+ + Q K
Sbjct: 23 DGCFTTARVI---DGKV--SLLSAHIQRLQDACQRLMISCDFWPQLEQE-------MKTL 70
Query: 117 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHR 176
G L + G + T ++ + ++
Sbjct: 71 AAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSPVRL 130
Query: 177 ATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNII 236
G+K ++ VL + L ++ + E + N+F KGN++
Sbjct: 131 GRNPHLAGIKHLNRLEQVLIRSHLEQTNADE---ALVLDSEGWVTECCAANLFWRKGNVV 187
Query: 237 STPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 296
TP + GI R+ I + + +Q+ E ++E L+ADE+ + V PV +
Sbjct: 188 YTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPVCAC 247
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId:
1260]}
Length = 53
Score = 25.0 bits (54), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 196 KAISRAKNRGFSDVLYLDSVNK-KNLEEVSSCNIFILK 232
AI+ K G + Y +++NK K +EEV++ ILK
Sbjct: 13 DAIAELKKAGITSDFYFNAINKAKTVEEVNALKNEILK 50
>d1b77a1 d.131.1.2 (A:1-110) gp45 sliding clamp {Bacteriophage RB69
[TaxId: 12353]}
Length = 110
Score = 24.7 bits (54), Expect = 9.9
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 218 KNLEEVSSCNIFILKGNIISTPATSGTILA 247
KN ++S I + +G I T A +GT A
Sbjct: 12 KNFASINS-GILLSQGKFIMTRAVNGTTYA 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.401
Gapped
Lambda K H
0.267 0.0560 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,250,748
Number of extensions: 58825
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 8
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)