Query 019528
Match_columns 339
No_of_seqs 273 out of 1818
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02742 protein tyrosine phos 100.0 2E-75 4.3E-80 543.0 32.3 263 55-333 26-301 (303)
2 PHA02740 protein tyrosine phos 100.0 2.2E-75 4.7E-80 539.6 30.1 258 55-335 25-295 (298)
3 PHA02747 protein tyrosine phos 100.0 1.5E-73 3.2E-78 532.3 29.9 269 55-338 25-309 (312)
4 PHA02746 protein tyrosine phos 100.0 6.3E-73 1.4E-77 530.0 31.8 265 55-332 25-318 (323)
5 PHA02738 hypothetical protein; 100.0 6.1E-72 1.3E-76 522.7 27.6 259 55-332 25-298 (320)
6 KOG0792 Protein tyrosine phosp 100.0 1.3E-71 2.7E-76 556.1 29.0 309 9-335 827-1137(1144)
7 KOG0790 Protein tyrosine phosp 100.0 1.2E-72 2.5E-77 518.7 15.6 272 55-332 244-525 (600)
8 KOG4228 Protein tyrosine phosp 100.0 1.1E-68 2.4E-73 540.7 20.2 273 39-329 525-798 (1087)
9 smart00194 PTPc Protein tyrosi 100.0 4.4E-67 9.5E-72 478.8 28.0 255 57-325 2-257 (258)
10 KOG0791 Protein tyrosine phosp 100.0 1.1E-63 2.4E-68 453.7 21.3 274 44-333 85-359 (374)
11 KOG0793 Protein tyrosine phosp 100.0 1E-63 2.2E-68 479.1 18.9 291 28-330 706-997 (1004)
12 cd00047 PTPc Protein tyrosine 100.0 1.9E-61 4.1E-66 434.6 26.5 229 88-326 1-231 (231)
13 COG5599 PTP2 Protein tyrosine 100.0 1.9E-61 4.1E-66 420.5 20.3 242 77-330 44-296 (302)
14 PF00102 Y_phosphatase: Protei 100.0 3.1E-59 6.7E-64 419.9 21.0 232 86-326 1-235 (235)
15 KOG4228 Protein tyrosine phosp 100.0 1.2E-57 2.7E-62 460.6 20.6 288 25-329 775-1086(1087)
16 PRK15375 pathogenicity island 100.0 1.8E-53 3.9E-58 404.1 28.2 219 90-330 302-532 (535)
17 KOG0789 Protein tyrosine phosp 100.0 6.2E-51 1.3E-55 396.3 26.2 241 83-332 124-371 (415)
18 smart00404 PTPc_motif Protein 99.9 3.2E-24 6.9E-29 168.2 11.2 102 224-326 1-105 (105)
19 smart00012 PTPc_DSPc Protein t 99.9 3.2E-24 6.9E-29 168.2 11.2 102 224-326 1-105 (105)
20 PTZ00242 protein tyrosine phos 99.7 6E-16 1.3E-20 131.6 11.5 135 133-324 16-155 (166)
21 PTZ00393 protein tyrosine phos 99.5 3.5E-13 7.6E-18 118.9 11.8 133 133-324 92-226 (241)
22 KOG1720 Protein tyrosine phosp 99.3 8.6E-12 1.9E-16 106.6 11.3 99 225-333 116-214 (225)
23 cd00127 DSPc Dual specificity 99.2 2.4E-10 5.2E-15 94.1 10.2 88 224-321 49-136 (139)
24 COG2453 CDC14 Predicted protei 99.0 1.5E-09 3.2E-14 93.7 9.7 91 232-329 79-169 (180)
25 KOG2836 Protein tyrosine phosp 99.0 7.5E-09 1.6E-13 82.3 12.1 139 133-338 17-159 (173)
26 smart00195 DSPc Dual specifici 99.0 1.3E-08 2.7E-13 83.9 12.4 89 225-321 45-133 (138)
27 PF00782 DSPc: Dual specificit 98.7 9.2E-08 2E-12 78.1 9.3 72 241-322 58-129 (133)
28 PRK12361 hypothetical protein; 98.2 4.8E-06 1.1E-10 84.2 9.4 81 235-322 152-232 (547)
29 PF05706 CDKN3: Cyclin-depende 98.0 1.1E-05 2.4E-10 67.6 4.8 125 115-279 23-153 (168)
30 PF03162 Y_phosphatase2: Tyros 97.9 4E-05 8.6E-10 65.1 6.9 85 224-318 58-143 (164)
31 PF14566 PTPlike_phytase: Inos 97.5 0.00022 4.8E-09 59.6 6.0 50 232-283 99-148 (149)
32 COG5350 Predicted protein tyro 97.2 0.0027 5.8E-08 52.3 8.7 78 231-315 65-143 (172)
33 KOG1718 Dual specificity phosp 97.0 0.0026 5.7E-08 53.2 7.4 80 224-313 57-141 (198)
34 KOG1719 Dual specificity phosp 97.0 0.0066 1.4E-07 50.1 8.9 75 237-319 88-162 (183)
35 TIGR01244 conserved hypothetic 96.8 0.012 2.6E-07 48.2 9.3 57 241-309 71-127 (135)
36 PF13350 Y_phosphatase3: Tyros 96.7 0.0032 7E-08 53.3 5.6 37 133-170 19-55 (164)
37 KOG2283 Clathrin coat dissocia 96.6 0.0029 6.2E-08 61.7 4.8 85 231-322 78-169 (434)
38 KOG1716 Dual specificity phosp 96.6 0.0096 2.1E-07 55.2 8.1 61 244-314 143-203 (285)
39 KOG1717 Dual specificity phosp 96.2 0.015 3.2E-07 52.3 6.6 74 245-332 240-313 (343)
40 PF04273 DUF442: Putative phos 95.7 0.026 5.6E-07 44.5 5.4 37 241-281 71-107 (110)
41 COG2365 Protein tyrosine/serin 94.6 0.059 1.3E-06 48.9 5.3 23 259-281 136-158 (249)
42 PLN02727 NAD kinase 94.4 0.1 2.2E-06 54.9 7.0 40 241-282 325-364 (986)
43 KOG4471 Phosphatidylinositol 3 92.6 0.15 3.2E-06 50.8 4.4 28 256-283 371-398 (717)
44 KOG1572 Predicted protein tyro 91.0 1.4 3.1E-05 39.2 8.3 55 242-306 133-187 (249)
45 PF06602 Myotub-related: Myotu 83.5 2 4.4E-05 41.0 5.2 24 259-282 231-254 (353)
46 KOG1089 Myotubularin-related p 76.0 4.8 0.0001 40.5 5.2 23 260-282 345-367 (573)
47 KOG2386 mRNA capping enzyme, g 74.9 7 0.00015 37.7 5.8 83 232-321 93-179 (393)
48 COG3453 Uncharacterized protei 71.1 12 0.00025 30.0 5.2 32 241-276 72-103 (130)
49 KOG0208 Cation transport ATPas 55.6 32 0.0007 37.1 6.6 65 260-324 852-925 (1140)
50 PF02061 Lambda_CIII: Lambda P 49.4 24 0.00052 22.3 2.8 24 227-250 2-25 (45)
51 PLN02160 thiosulfate sulfurtra 48.9 30 0.00064 28.1 4.3 16 260-276 82-97 (136)
52 cd01518 RHOD_YceA Member of th 45.4 21 0.00047 26.8 2.8 17 260-277 62-78 (101)
53 cd01523 RHOD_Lact_B Member of 44.9 32 0.0007 25.7 3.7 16 260-276 62-77 (100)
54 PRK11493 sseA 3-mercaptopyruva 39.1 32 0.0007 31.5 3.4 46 228-275 202-247 (281)
55 cd01533 4RHOD_Repeat_2 Member 37.7 61 0.0013 24.7 4.3 15 260-275 67-81 (109)
56 COG0607 PspE Rhodanese-related 36.7 34 0.00073 25.8 2.7 17 259-276 61-77 (110)
57 PF06165 Glyco_transf_36: Glyc 36.1 1.1E+02 0.0024 23.7 5.6 42 190-233 48-89 (110)
58 cd01448 TST_Repeat_1 Thiosulfa 35.4 90 0.002 24.2 5.0 33 241-276 63-95 (122)
59 PF10727 Rossmann-like: Rossma 31.4 74 0.0016 25.6 3.9 32 238-271 76-108 (127)
60 COG5495 Uncharacterized conser 29.3 55 0.0012 29.5 2.9 17 259-276 91-107 (289)
61 TIGR03865 PQQ_CXXCW PQQ-depend 28.4 1.1E+02 0.0024 25.5 4.7 18 259-276 116-133 (162)
62 COG2401 ABC-type ATPase fused 26.3 98 0.0021 30.6 4.3 40 247-286 232-274 (593)
63 COG4064 MtrG Tetrahydromethano 26.0 1.6E+02 0.0035 21.0 4.2 33 27-59 8-40 (75)
64 KOG1147 Glutamyl-tRNA syntheta 25.7 11 0.00025 37.6 -2.0 29 133-161 475-503 (712)
65 KOG1530 Rhodanese-related sulf 25.5 81 0.0017 25.6 3.0 28 247-275 76-104 (136)
66 PF14532 Sigma54_activ_2: Sigm 23.5 82 0.0018 25.2 2.9 32 244-275 6-37 (138)
67 cd01519 RHOD_HSP67B2 Member of 23.0 1.5E+02 0.0032 22.1 4.2 16 259-275 66-81 (106)
68 cd07937 DRE_TIM_PC_TC_5S Pyruv 22.1 3E+02 0.0064 25.2 6.6 85 241-327 176-268 (275)
69 cd01520 RHOD_YbbB Member of th 22.1 1.9E+02 0.004 22.8 4.7 19 259-277 86-104 (128)
70 cd07944 DRE_TIM_HOA_like 4-hyd 21.7 1.6E+02 0.0034 26.9 4.7 88 241-332 165-260 (266)
71 cd03174 DRE_TIM_metallolyase D 21.7 1.1E+02 0.0023 27.4 3.6 65 241-306 173-245 (265)
72 PF02302 PTS_IIB: PTS system, 21.0 1.2E+02 0.0027 22.0 3.2 14 262-275 2-15 (90)
73 cd01526 RHOD_ThiF Member of th 21.0 96 0.0021 24.2 2.8 16 260-276 73-88 (122)
74 cd01522 RHOD_1 Member of the R 21.0 1.6E+02 0.0034 22.8 4.0 16 260-276 65-80 (117)
75 cd01529 4RHOD_Repeats Member o 20.8 1.1E+02 0.0023 22.6 2.9 17 259-276 56-72 (96)
76 cd01444 GlpE_ST GlpE sulfurtra 20.6 2.2E+02 0.0047 20.6 4.6 16 259-275 56-71 (96)
77 COG3246 Uncharacterized conser 20.1 2.7E+02 0.0057 25.9 5.6 44 224-272 44-88 (298)
No 1
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=2e-75 Score=543.05 Aligned_cols=263 Identities=29% Similarity=0.475 Sum_probs=232.1
Q ss_pred HHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCccce
Q 019528 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQ 134 (339)
Q Consensus 55 ~~l~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNR~~~i~p~d~sRV~L~~~~~~~~~~~dYINAs~v~~~~~~~~~~ 134 (339)
..+.+||+.|..... ..+|..+..++|..||||.||+|||+|||+|+.. .+++||||||||+|+.. +++
T Consensus 26 ~~i~~E~~~i~~~~~-----~~~~~~~~~~~N~~KNRy~~i~~~D~tRV~L~~~----~~~~dYINAsyI~g~~~--~~~ 94 (303)
T PHA02742 26 EILKEEHEHIMQEIV-----AFSCNESLELKNMKKCRYPDAPCFDRNRVILKIE----DGGDDFINASYVDGHNA--KGR 94 (303)
T ss_pred HHHHHHHHHHhcCCC-----CCchhhccChhhhhcCCCCCCCCCCCCEEEeCCC----CCCCCcEEEeeecCCCC--CCe
Confidence 678999999975432 3578888999999999999999999999999853 24689999999999864 369
Q ss_pred EEEecCCCCCCHHHHHHHHhhccCCeEEEecccccccccccccccCCCC-CCCeeeeeeEEEEEEeeeecccEEEEEeEe
Q 019528 135 FIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAE-DGPREFGNIGIVTKWIKTTETALVLRNLEV 213 (339)
Q Consensus 135 ~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~~~~e~~~~~kc~~YwP~~-~~~~~~g~~~V~~~~~~~~~~~~~~r~l~v 213 (339)
|||||+|+++|++|||+||||++|.+|||||++.|++ .++|.+|||++ ++...||+|+|++..++. ..++++|.|.|
T Consensus 95 fIatQ~Pl~~T~~dFW~MVw~~~~~vIVmLt~~~E~g-~~kc~~YWp~~~~~~~~~g~~~V~~~~~~~-~~~~~~~~l~l 172 (303)
T PHA02742 95 FICTQAPLEETALDFWQAIFQDQVRVIVMITKIMEDG-KEACYPYWMPHERGKATHGEFKIKTKKIKS-FRNYAVTNLCL 172 (303)
T ss_pred EEEECCCCcccHHHHHHHHhhcCCCeEEEcchhhhCC-eeeccccCCCCCCCceEEEEEEEEEEEEEE-cCCEEEEEEEE
Confidence 9999999999999999999999999999999999976 58999999974 567899999999988776 46799999999
Q ss_pred ecccCCCCceEEEEEeecccCCCCCCCChHHHHHHHHHHHcCC------------CCCCCEEEEcCCCCchHHHHHHHHH
Q 019528 214 NYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP------------PNFGPIVVHCSAGIGRTGAYCTIHN 281 (339)
Q Consensus 214 ~~~~~~~~~~~v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~~~------------~~~~PivVHCs~GvGRtG~f~ai~~ 281 (339)
++.+.+. .|.|+||||++|||+|+|.++..+++|+..+++.. ...+|||||||+|+||||||||+|+
T Consensus 173 ~~~~~~~-~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~ 251 (303)
T PHA02742 173 TDTNTGA-SLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDI 251 (303)
T ss_pred EECCCCc-eEEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHH
Confidence 9865554 67999999999999999999999999998775421 1237999999999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHccc
Q 019528 282 TVQRILVGDMSALDLANTVKVFRSQRIGMVQTMVLSSFLVQSLVSFSYSLFL 333 (339)
Q Consensus 282 ~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~y~~l~~yl~~~~~ 333 (339)
+++++..++ .+||+++|+.||+||++||||.+||.|||++|++|+.+...
T Consensus 252 ~i~~~~~~~--~v~v~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~y~~~~~~ 301 (303)
T PHA02742 252 CISKYNERA--IIPLLSIVRDLRKQRHNCLSLPQQYIFCYFIVLIFAKLMAD 301 (303)
T ss_pred HHHHHHhcC--CCCHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 999998654 89999999999999999999999999999999999987653
No 2
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=2.2e-75 Score=539.60 Aligned_cols=258 Identities=19% Similarity=0.307 Sum_probs=224.8
Q ss_pred HHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCC--CCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCcc
Q 019528 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNR--YTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKV 132 (339)
Q Consensus 55 ~~l~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNR--~~~i~p~d~sRV~L~~~~~~~~~~~dYINAs~v~~~~~~~~ 132 (339)
..+.+||+.|..... .+++..+..++|+.||| |.||+|||||||+|.+ ++||||||||+|+.. +
T Consensus 25 ~~i~~E~~~i~~~~~-----~~~~~~~~~~~n~~knr~r~~~i~~~D~sRV~L~~-------~~~YINAnyVdG~~~--~ 90 (298)
T PHA02740 25 SCIIKEYRAIVPEHE-----DEANKACAQAENKAKDENLALHITRLLHRRIKLFN-------DEKVLDARFVDGYDF--E 90 (298)
T ss_pred HHHHHHHHHHhccCc-----cchhhhhhchhhhcccccccCCcCCccCceEEecC-------CCCcEEEEEecCCCC--C
Confidence 689999999975432 34677778899999996 6899999999999973 358999999999865 4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhccCCeEEEeccccccccccccc-ccCCCCCC-CeeeeeeEEEEEEeeeecccEEEEE
Q 019528 133 SQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCG-DYFQAEDG-PREFGNIGIVTKWIKTTETALVLRN 210 (339)
Q Consensus 133 ~~~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~~~~e~~~~~kc~-~YwP~~~~-~~~~g~~~V~~~~~~~~~~~~~~r~ 210 (339)
++|||||+|+++|++|||+||||++|.+|||||+..| .+|. +|||.+.+ ...+|+|.|++.++.. ..++++|.
T Consensus 91 ~~fIaTQ~Pl~~T~~dFW~MVwe~~~~iIVMLt~~~e----~kc~~~YWP~~~~~~~~~g~f~V~~~~~~~-~~~~~~~~ 165 (298)
T PHA02740 91 QKFICIINLCEDACDKFLQALSDNKVQIIVLISRHAD----KKCFNQFWSLKEGCVITSDKFQIETLEIII-KPHFNLTL 165 (298)
T ss_pred CcEEEecCCchhhHHHHHHHHHhcCCCEEEEcccccc----ccccccCCCCCCCCeEEECCEEEEEEEEEe-cCCEEEEE
Confidence 7999999999999999999999999999999999876 4798 99998655 4789999999887765 57899999
Q ss_pred eEeecccCCCCceEEEEEeecccCCCCCCCChHHHHHHHHHHHc---------CCCCCCCEEEEcCCCCchHHHHHHHHH
Q 019528 211 LEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYN---------LPPNFGPIVVHCSAGIGRTGAYCTIHN 281 (339)
Q Consensus 211 l~v~~~~~~~~~~~v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~---------~~~~~~PivVHCs~GvGRtG~f~ai~~ 281 (339)
|.|++.. +. .|.|+||||++|||+|+|.++..+++|+..+++ .....+|||||||||+||||||||+|+
T Consensus 166 l~l~~~~-~~-~r~V~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi 243 (298)
T PHA02740 166 LSLTDKF-GQ-AQKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDI 243 (298)
T ss_pred EEEEcCC-CC-cEEEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHH
Confidence 9998743 33 579999999999999999999999999876642 122358999999999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHccccc
Q 019528 282 TVQRILVGDMSALDLANTVKVFRSQRIGMVQTMVLSSFLVQSLVSFSYSLFLIM 335 (339)
Q Consensus 282 ~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~y~~l~~yl~~~~~~~ 335 (339)
+++++..++ .+||+++|++||+||++|||+.+||.|||++|++|+...+-++
T Consensus 244 ~l~~~~~~~--~vdi~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~yl~~~~~~~ 295 (298)
T PHA02740 244 CATEFDKTG--MLSIANALKKVRQKKYGCMNCLDDYVFCYHLIAAYLKEKFDIL 295 (298)
T ss_pred HHHHHHhcC--cccHHHHHHHHHhhCccccCCHHHHHHHHHHHHHHHHHhhcce
Confidence 999998654 8999999999999999999999999999999999999876554
No 3
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=1.5e-73 Score=532.26 Aligned_cols=269 Identities=30% Similarity=0.425 Sum_probs=230.6
Q ss_pred HHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCccce
Q 019528 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQ 134 (339)
Q Consensus 55 ~~l~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNR~~~i~p~d~sRV~L~~~~~~~~~~~dYINAs~v~~~~~~~~~~ 134 (339)
..|.+||+.|..... ..++..+..++|..||||.||+|||++||+|.+.. ++.+||||||||+|+.. +++
T Consensus 25 ~~i~~E~~~i~~~~~-----~~~~~~~~~~~N~~kNRy~di~p~D~sRV~L~~~~---~~~~dYINAsyV~g~~~--~~~ 94 (312)
T PHA02747 25 GIIRDEHHQIILKPF-----DGLIANFEKPENQPKNRYWDIPCWDHNRVILDSGG---GSTSDYIHANWIDGFED--DKK 94 (312)
T ss_pred HHHHHHHHHHhcCCC-----CChhhhhhCchhhccCCCCCCCCCCCCEeEecCCC---CCCCCcEEeeeecCCCC--CCe
Confidence 578999999864321 23566778899999999999999999999998643 24689999999999864 379
Q ss_pred EEEecCCCCCCHHHHHHHHhhccCCeEEEecccc-cccccccccccCCCC-CCCeeeeeeEEEEEEeeeecccEEEEEeE
Q 019528 135 FIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLV-DNYKMVKCGDYFQAE-DGPREFGNIGIVTKWIKTTETALVLRNLE 212 (339)
Q Consensus 135 ~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~~~~-e~~~~~kc~~YwP~~-~~~~~~g~~~V~~~~~~~~~~~~~~r~l~ 212 (339)
|||||+|+++|++|||+||||++|.+|||||++. |++ .++|.+|||.+ ++...+|+|.|++.++.. ..++++|.|+
T Consensus 95 yIaTQ~Pl~~T~~dFW~MVwe~~~~~IVMLt~~~~e~g-~~kc~~YWp~~~~~~~~~g~~~V~~~~~~~-~~~~~~~~l~ 172 (312)
T PHA02747 95 FIATQGPFAETCADFWKAVWQEHCSIIVMLTPTKGTNG-EEKCYQYWCLNEDGNIDMEDFRIETLKTSV-RAKYILTLIE 172 (312)
T ss_pred EEEeCCCcchhHHHHHHHHHhccCCEEEEcccccccCC-cccccccCCCCCCCCeEeeeEEEEEEEEEe-cCCeEEEEEE
Confidence 9999999999999999999999999999999998 665 68999999975 567899999999887766 4679999999
Q ss_pred eecccCCCCceEEEEEeecccCCCCCCCChHHHHHHHHHHHcC-----------CCCCCCEEEEcCCCCchHHHHHHHHH
Q 019528 213 VNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL-----------PPNFGPIVVHCSAGIGRTGAYCTIHN 281 (339)
Q Consensus 213 v~~~~~~~~~~~v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~~-----------~~~~~PivVHCs~GvGRtG~f~ai~~ 281 (339)
|++...+. .|.|+||||++|||+|+|.+...+++|++.++.. ....+|||||||+|+||||||||+|+
T Consensus 173 l~~~~~~~-~r~V~h~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi 251 (312)
T PHA02747 173 ITDKILKD-SRKISHFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDI 251 (312)
T ss_pred EEECCCCC-ceEEEEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHH
Confidence 99765554 5799999999999999999998888887654321 01237999999999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHhcccCCCChHHHHHH---HHHHHHHHHHcccccccc
Q 019528 282 TVQRILVGDMSALDLANTVKVFRSQRIGMVQTMVLSSFL---VQSLVSFSYSLFLIMHLS 338 (339)
Q Consensus 282 ~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~---y~~l~~yl~~~~~~~~~~ 338 (339)
+++++..++ .+||+++|+.||+||++||||.+||.|| |+++.+|+.....++-+-
T Consensus 252 ~i~~l~~~~--~v~v~~~V~~lR~qR~~~Vqt~~QY~F~~~~Y~~l~~~~~~~~~~~~~~ 309 (312)
T PHA02747 252 CLNQLVKRK--AICLAKTAEKIREQRHAGIMNFDDYLFIQPGYEVLHYFLSKIKAIDKIK 309 (312)
T ss_pred HHHHHHhcC--CCCHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999998654 8999999999999999999999999999 999999998876655443
No 4
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=6.3e-73 Score=530.00 Aligned_cols=265 Identities=29% Similarity=0.464 Sum_probs=228.5
Q ss_pred HHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeecCCC-----------------CCCCCCC
Q 019528 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKD-----------------YRPAARG 117 (339)
Q Consensus 55 ~~l~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNR~~~i~p~d~sRV~L~~~~~-----------------~~~~~~d 117 (339)
..+.+||..|..... .+++..+..++|..||||.||+|||+|||+|....+ ...+++|
T Consensus 25 ~~~~~e~~~i~~~~~-----~~t~~~~~~~~N~~KNRy~di~p~D~sRV~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 99 (323)
T PHA02746 25 EFVLLEHAEVMDIPI-----RGTTNHFLKKENLKKNRFHDIPCWDHSRVVINAHESLKMFDVGDSDGKKIEVTSEDNAEN 99 (323)
T ss_pred HHHHHHHHHHhcCCC-----CcchhhccChhhccccCCCCCCCCcCCEEEecCCCCccccccccccccccccccCCCCCC
Confidence 678999999986543 356778889999999999999999999999986421 0234589
Q ss_pred cccceeeecCCCCccceEEEecCCCCCCHHHHHHHHhhccCCeEEEecccccccccccccccCCCCCC-CeeeeeeEEEE
Q 019528 118 YINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDG-PREFGNIGIVT 196 (339)
Q Consensus 118 YINAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~~~~e~~~~~kc~~YwP~~~~-~~~~g~~~V~~ 196 (339)
|||||||+|+.. .++|||||+|+++|++|||+||||++|.+|||||+++++ ..||.+|||.+.+ ...||+|.|++
T Consensus 100 YINAsyV~g~~~--~~~fIaTQ~Pl~~T~~dFW~MIwe~~v~vIVMLt~~~e~--~~kc~~YWP~~~~~~~~~g~~~V~~ 175 (323)
T PHA02746 100 YIHANFVDGFKE--ANKFICAQGPKEDTSEDFFKLISEHESQVIVSLTDIDDD--DEKCFELWTKEEDSELAFGRFVAKI 175 (323)
T ss_pred eEEEecccCCCC--CCeEEEeCCCChhhHHHHHHHHHhhCCCEEEEecccccC--CccCCCCCCCCCCCCeEEcCEEEEE
Confidence 999999999864 369999999999999999999999999999999998653 4799999998744 57899999998
Q ss_pred EEeeeecccEEEEEeEeecccCCCCceEEEEEeecccCCCCCCCChHHHHHHHHHHHcC-----------CCCCCCEEEE
Q 019528 197 KWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL-----------PPNFGPIVVH 265 (339)
Q Consensus 197 ~~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~~-----------~~~~~PivVH 265 (339)
..... ..+++.+.|.|++...+. .|.|+||||++|||+|+|.++..+++|++.+++. +...+|||||
T Consensus 176 ~~~~~-~~~~~~~~l~l~~~~~~~-~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVH 253 (323)
T PHA02746 176 LDIIE-ELSFTKTRLMITDKISDT-SREIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVH 253 (323)
T ss_pred EEEEE-cCCeEEEEEEEEECCCCC-ceEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEE
Confidence 87655 467899999998765554 5799999999999999999999999998776532 1123799999
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHcc
Q 019528 266 CSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMVLSSFLVQSLVSFSYSLF 332 (339)
Q Consensus 266 Cs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~y~~l~~yl~~~~ 332 (339)
||+|+||||||||+|++++++..++ .+||+++|++||+||++||||.+||.|||++|.+||....
T Consensus 254 CsaGvGRTGtfcaid~~l~~l~~~~--~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~~l~~~~ 318 (323)
T PHA02746 254 CSAGIGRAGTFCAIDNALEQLEKEK--EVCLGEIVLKIRKQRHSSVFLPEQYAFCYKALKYAIIEEA 318 (323)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhcC--CCCHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998765 8999999999999999999999999999999999987654
No 5
>PHA02738 hypothetical protein; Provisional
Probab=100.00 E-value=6.1e-72 Score=522.71 Aligned_cols=259 Identities=27% Similarity=0.433 Sum_probs=223.1
Q ss_pred HHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCccce
Q 019528 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQ 134 (339)
Q Consensus 55 ~~l~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNR~~~i~p~d~sRV~L~~~~~~~~~~~dYINAs~v~~~~~~~~~~ 134 (339)
..+.+||+.|..... ..++..+. .|..||||.||+|||++||+|... .+.+||||||||+|+... ++
T Consensus 25 ~~i~~E~~~i~~~~~-----~~t~~~~~--~N~~kNR~~~v~~~d~sRV~L~~~----~~~~dYINAsyVdg~~~~--~k 91 (320)
T PHA02738 25 EVITREHQKVISEKV-----DGTFNAEK--KNRKLNRYLDAVCFDHSRVILPAE----RNRGDYINANYVDGFEYK--KK 91 (320)
T ss_pred HHHHHHHHHHhcCCC-----CcchhHHH--HhhhhCCCCCcCCCcCCEEEeCCC----CCCCCceEeEEecCCCCC--ce
Confidence 578999999864432 13343333 499999999999999999999743 346899999999998643 69
Q ss_pred EEEecCCCCCCHHHHHHHHhhccCCeEEEecccccccccccccccCCCC-CCCeeeeeeEEEEEEeeeecccEEEEEeEe
Q 019528 135 FIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAE-DGPREFGNIGIVTKWIKTTETALVLRNLEV 213 (339)
Q Consensus 135 ~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~~~~e~~~~~kc~~YwP~~-~~~~~~g~~~V~~~~~~~~~~~~~~r~l~v 213 (339)
|||||+|+++|++|||+||||++|.+|||||+..|++ .++|.+|||.+ ++...+|+|+|++..+.. .++++.|.|.|
T Consensus 92 fI~TQ~Pl~~T~~dFW~MVwe~~v~~IVmL~~~~E~~-~~kc~~YWp~~~~~~~~~g~f~V~~~~~~~-~~~~~~~~l~l 169 (320)
T PHA02738 92 FICGQAPTRQTCYDFYRMLWMEHVQIIVMLCKKKENG-REKCFPYWSDVEQGSIRFGKFKITTTQVET-HPHYVKSTLLL 169 (320)
T ss_pred eEEecCCChHHHHHHHHHHHHhCCcEEEEeeehhhCC-eeeccccCCCCCCCceEeccEEEEEEEEEe-cCCeEEEEEEE
Confidence 9999999999999999999999999999999999976 58999999975 457899999999988776 46899999999
Q ss_pred ecccCCCCceEEEEEeecccCCCCCCCChHHHHHHHHHHHcCC--------------CCCCCEEEEcCCCCchHHHHHHH
Q 019528 214 NYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP--------------PNFGPIVVHCSAGIGRTGAYCTI 279 (339)
Q Consensus 214 ~~~~~~~~~~~v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~~~--------------~~~~PivVHCs~GvGRtG~f~ai 279 (339)
++.. + ..|.|+||||++|||+|+|.++..+++++..+++.. ...+|||||||+|+||||||||+
T Consensus 170 ~~~~-~-~~r~V~h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcai 247 (320)
T PHA02738 170 TDGT-S-ATQTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVV 247 (320)
T ss_pred EeCC-C-CcEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHH
Confidence 8743 3 357999999999999999999999999987765310 11379999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHcc
Q 019528 280 HNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMVLSSFLVQSLVSFSYSLF 332 (339)
Q Consensus 280 ~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~y~~l~~yl~~~~ 332 (339)
|++++++..++ .+||+++|++||+||++|||+.+||.|||+++++|+...-
T Consensus 248 di~i~~~~~~~--~vdv~~~V~~lR~qR~~~vqt~~QY~F~y~~l~~y~~~~~ 298 (320)
T PHA02738 248 DISISRFDACA--TVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVKRYVNLTV 298 (320)
T ss_pred HHHHHHHHhcC--CcCHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcC
Confidence 99999998754 8999999999999999999999999999999999988643
No 6
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-71 Score=556.06 Aligned_cols=309 Identities=31% Similarity=0.514 Sum_probs=265.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCChhHHhHHHHHHHHHHHHhhcchHHHHHHHHHhHhcCCCCccccccceeecCCCCCC
Q 019528 9 HSTPHNTKPFEFSAVDFPPRISLTADQYNHCSEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLS 88 (339)
Q Consensus 9 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~ 88 (339)
+..-.++..+++++...+.+..-+.. ...+.+..|++.|.. .++-.||+.|.+.+ + ...|++|..|+|..
T Consensus 827 ~~~~l~~~~la~~~~~~~~~~~~~r~---~~dks~~~L~~~L~~--g~v~~efE~i~rkk--p---~~~~~~a~lpeN~~ 896 (1144)
T KOG0792|consen 827 PLSQLVPESLAVDSVVEELDSGATRA---SLDKSCIILAQGLED--GMVFTEFEQIYRKK--P---GMACSIARLPENAP 896 (1144)
T ss_pred chhhhCCccccccCccccCccccccc---chhhHHHHHHhhhhc--CchHHHHHHHhhhC--C---Cceeeecccccccc
Confidence 33334445566666555554433222 233455677788876 47888999998665 3 35799999999999
Q ss_pred CCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCccceEEEecCCCCCCHHHHHHHHhhccCCeEEEecccc
Q 019528 89 KNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLV 168 (339)
Q Consensus 89 kNR~~~i~p~d~sRV~L~~~~~~~~~~~dYINAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~~~~ 168 (339)
||||.||+|||.|||.|.+..+ ...+|||||+|..+.++....|||||||++.|+.|||+||||+++.+|||||..+
T Consensus 897 KNRyrdvlPYD~tRV~L~~~~~---~nagYINAS~i~ipvgg~e~~YIA~QGPLp~T~~DFWQMVWEQ~~~lIvMlT~e~ 973 (1144)
T KOG0792|consen 897 KNRYRDVLPYDDTRVELQPSKD---NNAGYINASHIEIPVGGIENRYIACQGPLPHTCTDFWQMVWEQGSTLIVMLTTEV 973 (1144)
T ss_pred ccccCCcCCCcCceeeeccCCC---CCcccccceeeEeeecceeEEEEEecCCCcchHHHHHHHHHhcCceEEEEEeehh
Confidence 9999999999999999998664 4679999999999987777899999999999999999999999999999999999
Q ss_pred cccccccccccCCCC-CCCeeeeeeEEEEEEeeeecccEEEEEeEeecccCCCCceEEEEEeecccCCCCCCCChHHHHH
Q 019528 169 DNYKMVKCGDYFQAE-DGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVRE 247 (339)
Q Consensus 169 e~~~~~kc~~YwP~~-~~~~~~g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~~~~Wpd~~vP~~~~~~~~ 247 (339)
|.| +.||++|||.. .+++.||.|.|+|...+. ...++.|.|+|.+..+++ .|+|+|+||++|||||+|+++..|++
T Consensus 974 Egg-R~KchqYWPr~~~~t~~ygrf~v~~~~~~~-t~~y~tr~m~l~~~~t~e-eR~V~hLQYtaWPDHg~P~D~~~FL~ 1050 (1144)
T KOG0792|consen 974 EGG-RVKCHQYWPRLGHETMEYGRFQVTCVFEQQ-TTCYVTREMTLKDLQTRE-ERTVWHLQYTAWPDHGVPDDPNDFLD 1050 (1144)
T ss_pred hcC-eeccccccCCCCccceeccceEEEEEEecc-cccEEEEeEEEeeccCCc-eeeeeeeeecccccCCCCCChHHHHH
Confidence 976 69999999987 578899999999999876 478999999999988777 56999999999999999999999999
Q ss_pred HHHHHHcCCCC-CCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCChHHHHHHHHHHHH
Q 019528 248 ILKRIYNLPPN-FGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMVLSSFLVQSLVS 326 (339)
Q Consensus 248 ~~~~~~~~~~~-~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~y~~l~~ 326 (339)
|+.+++....+ ..|||||||||+|||||+|.++.++..+..+. .+||.++|+.||.||.+||||..||.|||++|+.
T Consensus 1051 FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne--~vdi~divr~mR~QR~~mVQT~~QYkFVyevil~ 1128 (1144)
T KOG0792|consen 1051 FLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNE--PVDILDIVRTMRDQRAMMVQTLSQYKFVYEVILR 1128 (1144)
T ss_pred HHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhhhccchHHhhHHHHHHHH
Confidence 99998876654 46999999999999999999999999887654 8999999999999999999999999999999999
Q ss_pred HHHHccccc
Q 019528 327 FSYSLFLIM 335 (339)
Q Consensus 327 yl~~~~~~~ 335 (339)
|+....++-
T Consensus 1129 ~l~~~~l~~ 1137 (1144)
T KOG0792|consen 1129 VLKRGRLIP 1137 (1144)
T ss_pred HHHhccccc
Confidence 999877653
No 7
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-72 Score=518.75 Aligned_cols=272 Identities=35% Similarity=0.535 Sum_probs=236.2
Q ss_pred HHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecC------C
Q 019528 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTS------S 128 (339)
Q Consensus 55 ~~l~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNR~~~i~p~d~sRV~L~~~~~~~~~~~dYINAs~v~~~------~ 128 (339)
.+|++||+.|++..... .-+...+.+|+|+.||||.||+|||||||+|...+. ..+++||||||||... .
T Consensus 244 ~GfwEEFesLqq~~~~~---~~sr~EG~r~eN~~KNRYkNIlPfDHtRViL~d~~~-n~pgsdYINAnyi~~~~q~~~~~ 319 (600)
T KOG0790|consen 244 AGFWEEFESLQQQEVKN---LHSRLEGQRPENKGKNRYKNILPFDHTRVILQDRDP-NIPGSDYINANYIMIEFQRLCNN 319 (600)
T ss_pred cchhHHHHHhhhhhhHh---hhhhhccccchhhccccccccCcccceeeEeecCCC-CCccchhcccchhhhhhhhccCc
Confidence 68999999998654321 234456778999999999999999999999996543 4678999999998532 1
Q ss_pred CCccceEEEecCCCCCCHHHHHHHHhhccCCeEEEecccccccccccccccCCCCCCCeeeeeeEEEEEEeeeecccEEE
Q 019528 129 SEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVL 208 (339)
Q Consensus 129 ~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~~~~e~~~~~kc~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~ 208 (339)
..-++.||||||-+.+|+.|||+||||+|+++|||-|...|.| .+||.+|||.++....||.+.|++..+... .+|++
T Consensus 320 ~~~kKsyIAtQGCL~nTVnDFW~MvwQENsrVIVMtTkE~ERg-K~KC~~YWPee~~~e~~G~~~v~~v~E~~t-~dY~L 397 (600)
T KOG0790|consen 320 SKPKKSYIATQGCLQNTVNDFWRMVWQENSRVIVMTTKEVERG-KSKCVKYWPEEGALEEYGVMRVRNVKESDT-HDYTL 397 (600)
T ss_pred cccccceeehhhHHHHHHHHHHHHHHhccceEEEEehhhhhcc-cccccccCCcccchhhcCceEEEecccccc-cccee
Confidence 1122589999999999999999999999999999999999987 489999999877788999999999988764 68999
Q ss_pred EEeEeecccCCCCceEEEEEeecccCCCCCCCChHHHHHHHHHHHcCC---CCCCCEEEEcCCCCchHHHHHHHHHHHHH
Q 019528 209 RNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP---PNFGPIVVHCSAGIGRTGAYCTIHNTVQR 285 (339)
Q Consensus 209 r~l~v~~~~~~~~~~~v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~~~---~~~~PivVHCs~GvGRtG~f~ai~~~~~~ 285 (339)
|+|.++....+...|.|+||||..|||||||.++..++.|+..+.+.. ...||||||||||+||||||++||+++++
T Consensus 398 R~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~ 477 (600)
T KOG0790|consen 398 RELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQ 477 (600)
T ss_pred hheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHH
Confidence 999999766666678999999999999999999999999999886543 23489999999999999999999999999
Q ss_pred HHcCC-CCCCCHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHcc
Q 019528 286 ILVGD-MSALDLANTVKVFRSQRIGMVQTMVLSSFLVQSLVSFSYSLF 332 (339)
Q Consensus 286 l~~~~-~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~y~~l~~yl~~~~ 332 (339)
+...+ ...+||..+|+.+|.||.|||||+.||.|+|.|+.+||.++-
T Consensus 478 I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY~Avqhyietl~ 525 (600)
T KOG0790|consen 478 IREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYVAVQHYIETLQ 525 (600)
T ss_pred HHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHHHHHHHHHHHHHH
Confidence 98643 346999999999999999999999999999999999998753
No 8
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-68 Score=540.75 Aligned_cols=273 Identities=31% Similarity=0.543 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCc
Q 019528 39 CSEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGY 118 (339)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~l~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNR~~~i~p~d~sRV~L~~~~~~~~~~~dY 118 (339)
..+++++++++..+...+|.+||+.|... ..++..+.+.+|..||||.||++||++||+|...++ ..++||
T Consensus 525 v~dl~~~i~~~~~~~~~~F~~Eyesl~~~-------~~~~~~s~~~en~~KNRY~nilayD~sRV~L~~i~G--d~~sDY 595 (1087)
T KOG4228|consen 525 VADLLEHIERRKADDGYGFKQEYESLPEG-------QFTWEHSNKKENKQKNRYENILAYDHSRVILPPIEG--DPNSDY 595 (1087)
T ss_pred HHHHHHHHHHhhcccccchHHHHhhcccc-------CCccccCccccccccccCCcchhhhcceeeecccCC--Cccccc
Confidence 34566777877777678999999999855 135667788999999999999999999999998765 567899
Q ss_pred ccceeeecCCCCccceEEEecCCCCCCHHHHHHHHhhccCCeEEEecccccccccccccccCCCCCCCeeeeeeEEEEEE
Q 019528 119 INASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKW 198 (339)
Q Consensus 119 INAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~~~~e~~~~~kc~~YwP~~~~~~~~g~~~V~~~~ 198 (339)
||||||+||.. +++|||||||+++|+.||||||||+++.+|||++.+.|.+ +.||.+||| .++.+||++.|++..
T Consensus 596 INAnyIdGy~e--~n~yIaaQgP~~eTv~DFWRMVWEq~S~~IVMvTnl~E~~-r~kC~qYWP--~~t~~yGdi~V~~~~ 670 (1087)
T KOG4228|consen 596 INANYIDGYKE--PNAYIAAQGPRPETVGDFWRMVWEQKSAGIVMVTNLEEFS-RVKCAQYWP--EGTETYGDIKVTLVQ 670 (1087)
T ss_pred eeeeeeecccc--cccceeccCCcccchHHHHHHheeccCCcEEEEecccccc-cccccccCC--CCcccccccccccee
Confidence 99999999964 4799999999999999999999999999999999999976 689999999 678899999999988
Q ss_pred eeeecccEEEEEeEeecccCCCCceEEEEEeecccCCCCCCCChHHHHHHHHHHHcCCC-CCCCEEEEcCCCCchHHHHH
Q 019528 199 IKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPP-NFGPIVVHCSAGIGRTGAYC 277 (339)
Q Consensus 199 ~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~~~~-~~~PivVHCs~GvGRtG~f~ 277 (339)
.+. ..++.+|+|.|...+... .|.|+||||++|||+|+|..+..++.|+++++...+ ..||||||||||+||||+|+
T Consensus 671 ~~~-~a~y~iRtf~l~~~g~~~-~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi 748 (1087)
T KOG4228|consen 671 TKP-LAEYGIRTFALKKQGENP-KREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFI 748 (1087)
T ss_pred eee-eccceEEeeeccccCCCC-CceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEE
Confidence 777 478999999999776655 679999999999999999999999999999988763 44999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHH
Q 019528 278 TIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMVLSSFLVQSLVSFSY 329 (339)
Q Consensus 278 ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~y~~l~~yl~ 329 (339)
+||.++++++.++ .+||++.|+.||.||..||||.+||.|||+|++++..
T Consensus 749 ~iDaml~~~~~e~--~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~AllE~~~ 798 (1087)
T KOG4228|consen 749 VIDAMLDRLECEG--KVDIYGHVKTLRRQRNNMVQTEEQYIFIHEALLEACL 798 (1087)
T ss_pred EeHHHHHHHHhhC--ccceechhHHHHhccccccccHHHHHHHHHHHHHHHh
Confidence 9999999998765 8999999999999999999999999999999999754
No 9
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=100.00 E-value=4.4e-67 Score=478.78 Aligned_cols=255 Identities=39% Similarity=0.680 Sum_probs=227.1
Q ss_pred HHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCccceEE
Q 019528 57 ISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFI 136 (339)
Q Consensus 57 l~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNR~~~i~p~d~sRV~L~~~~~~~~~~~dYINAs~v~~~~~~~~~~~I 136 (339)
+.+||+.|...... ...+..+..++|..||||.||+|||++||+|.+..+ +++||||||||+|+.. .++||
T Consensus 2 ~~~e~~~i~~~~~~----~~~~~~~~~~~n~~kNR~~~v~~~d~~RV~l~~~~~---~~~~YInAs~v~~~~~--~~~fI 72 (258)
T smart00194 2 LEEEFEKLDRLKPD----DESCTVAARPENRDKNRYKDVLPYDHTRVKLTPPPG---EGSDYINASYIDGPNG--PKAYI 72 (258)
T ss_pred hHHHHHHhhccCCC----CccccccCCccccccCCCCCCCCCCCCEeEccCCCC---CCCCceeeeeEecCCC--ccceE
Confidence 67899999865432 246788889999999999999999999999986432 4689999999999854 36999
Q ss_pred EecCCCCCCHHHHHHHHhhccCCeEEEecccccccccccccccCCCCCCCeeeeeeEEEEEEeeeecccEEEEEeEeecc
Q 019528 137 ATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYK 216 (339)
Q Consensus 137 ~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~~~~e~~~~~kc~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~v~~~ 216 (339)
+||+|+++|++|||+|||+++|.+||||++..|.+ .++|.+|||.+.+...+|.|+|++.+... ..+++.|+|+|++.
T Consensus 73 ~tQ~P~~~t~~dFW~mv~~~~~~~IVmL~~~~e~~-~~~~~~Ywp~~~~~~~~g~~~V~~~~~~~-~~~~~~~~l~v~~~ 150 (258)
T smart00194 73 ATQGPLPSTVEDFWRMVWEEKVTTIVMLTELEEKG-REKCAQYWPEEEEPLTYGDITVTLKSVEK-VDDYTIRTLEVTNT 150 (258)
T ss_pred EeCCCchHHHHHHHHHHHhcCCCEEEEeccceeCC-EeeccccCCCCCCcceECCEEEEEEEEEe-cCCEEEEEEEEEEC
Confidence 99999999999999999999999999999999876 58999999987777899999999998877 46899999999987
Q ss_pred cCCCCceEEEEEeecccCCCCCCCChHHHHHHHHHHHcCCCC-CCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCC
Q 019528 217 ESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPN-FGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALD 295 (339)
Q Consensus 217 ~~~~~~~~v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~~~~~-~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~d 295 (339)
+.+. .+.|+||||.+|||+++|.+...++++++.++..... .+||+|||++|+||||+|||++++++++..+. .+|
T Consensus 151 ~~~~-~~~v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~--~v~ 227 (258)
T smart00194 151 GCSE-TRTVTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGK--EVD 227 (258)
T ss_pred CCCC-cEEEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcC--CCC
Confidence 6544 5799999999999999999999999999988765432 48999999999999999999999999998754 799
Q ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHH
Q 019528 296 LANTVKVFRSQRIGMVQTMVLSSFLVQSLV 325 (339)
Q Consensus 296 v~~~v~~lR~qR~~~Vqt~~Qy~F~y~~l~ 325 (339)
+.++++.||+||++||++.+||.|||.+++
T Consensus 228 v~~~v~~lR~~R~~~v~~~~Qy~f~~~~l~ 257 (258)
T smart00194 228 IFEIVKELRSQRPGMVQTEEQYIFLYRAIL 257 (258)
T ss_pred HHHHHHHHHhccccccCCHHHHHHHHHHHh
Confidence 999999999999999999999999999986
No 10
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-63 Score=453.73 Aligned_cols=274 Identities=34% Similarity=0.563 Sum_probs=241.4
Q ss_pred HHHHHHhhcchHHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCccccee
Q 019528 44 SFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASL 123 (339)
Q Consensus 44 ~~~~~~~~~~~~~l~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNR~~~i~p~d~sRV~L~~~~~~~~~~~dYINAs~ 123 (339)
.+++......+-++.+||+.|..... ..++..|..++|..||||.||+|||+|||+|.+..+ .+++|||||||
T Consensus 85 ~~~~~~~~dsn~~f~eey~~lk~~g~-----~~~~~aA~l~~n~~knr~~nilpYd~Srvkl~~~~e--~~~~DYinA~~ 157 (374)
T KOG0791|consen 85 LHVKKMSADSNYKFSEEYNELKLVGL-----DQSKLAALLPLNRPKNRYTNILPYDNSRVKLSPVNE--EEGSDYINASY 157 (374)
T ss_pred hhhhhcccccchhhHHHHhhhhhhcc-----cchhhhhhcCCCCCcCCcCCCCCcccccceeccccc--cchhhhhhhhh
Confidence 45566666667899999999986543 235667889999999999999999999999997654 67889999999
Q ss_pred eecCCCCccceEEEecCCCCCCHHHHHHHHhhccCCeEEEecccccccccccccccCCCCCCCeeeeeeEEEEEEeeeec
Q 019528 124 ISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTE 203 (339)
Q Consensus 124 v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~~~~e~~~~~kc~~YwP~~~~~~~~g~~~V~~~~~~~~~ 203 (339)
+.|+..+ +.|||||+|+++|.++||+||||+++.+|||||...|.+ +.||..|||.+..+..+|+.+|....+.. -
T Consensus 158 ~Pg~~s~--~~fIAtQGPlp~t~~~fW~mvwq~~~~~IVmlt~~~e~~-R~kc~~ywP~~~~~~~~gdi~V~~v~e~~-~ 233 (374)
T KOG0791|consen 158 IPGYNSP--REFIATQGPLPETRDDFWKMVWQQKSHIIVMLTKCNEKG-RVKCDEYWPDEEVPVAYGDITVTMVSEES-L 233 (374)
T ss_pred cCCCCCc--ceEEEeeCCCCCChhHHHHHHHHhhcceEEEEeeccccc-chhhhhhcccccccceeccEEEEEechhh-c
Confidence 9998764 799999999999999999999999999999999999987 69999999998777899999999988765 4
Q ss_pred ccEEEEEeEeecccCCCCceEEEEEeecccCCCCCCCChHHHHHHHHHHHcCC-CCCCCEEEEcCCCCchHHHHHHHHHH
Q 019528 204 TALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP-PNFGPIVVHCSAGIGRTGAYCTIHNT 282 (339)
Q Consensus 204 ~~~~~r~l~v~~~~~~~~~~~v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~~~-~~~~PivVHCs~GvGRtG~f~ai~~~ 282 (339)
.++.+|.|.+... .+ +|.++||||..|||+|+|..+..++.|++.+++.- ...+|++||||+|+||||||+|+|.+
T Consensus 234 ~~w~ir~~~l~~~--~~-sr~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~L 310 (374)
T KOG0791|consen 234 DEWTIREFRLNYA--GE-SRKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRL 310 (374)
T ss_pred CCceEEEEeeecc--cc-cceeEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHH
Confidence 6899999999832 22 46999999999999999988899999999887653 23579999999999999999999999
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHccc
Q 019528 283 VQRILVGDMSALDLANTVKVFRSQRIGMVQTMVLSSFLVQSLVSFSYSLFL 333 (339)
Q Consensus 283 ~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~y~~l~~yl~~~~~ 333 (339)
++++..++ .+|++++|.+||.+|+.||||++||.|+|+++++-+.+...
T Consensus 311 Lqq~~~~~--~vdi~~iv~~lR~~R~~mVqte~Qyvfl~~c~~~~l~~~~~ 359 (374)
T KOG0791|consen 311 LQQIDSEE--TVDIFGVVLELRSARMLMVQTEDQYVFLHQCVLESLQGKKP 359 (374)
T ss_pred HHHhcccc--cccHHHHHHHhhhccccccchHHHHHHHHHHHHHHHhCCCc
Confidence 99998764 89999999999999999999999999999999999887654
No 11
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-63 Score=479.06 Aligned_cols=291 Identities=31% Similarity=0.497 Sum_probs=260.7
Q ss_pred CCCCChhHHhHHHHHHHHHHHHhhcchHHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeec
Q 019528 28 RISLTADQYNHCSEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQ 107 (339)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNR~~~i~p~d~sRV~L~~ 107 (339)
.+.++.-++..-|-.|+++++.|.++ ..|++||+.|...+.-| .++..|..++|..|||...++||||+||.|+.
T Consensus 706 EpA~~nmDISTGHmiLsymedhLrnk-~rlekeWealc~YqaEp----n~r~~aq~e~~a~kNR~~a~LpyDhsrV~l~~ 780 (1004)
T KOG0793|consen 706 EPAQSNMDISTGHMILSYMEDHLRNK-NRLEKEWEALCAYQAEP----NSRFVAQREENAPKNRSLAVLPYDHSRVLLKA 780 (1004)
T ss_pred cccccccccccchhHHHHHHHHhhCc-hHHHHHHHHHHHhhcCc----chhhhhcccccccccCCCCccccccceeeecc
Confidence 34566667778889999999999998 88999999998876533 46778889999999999999999999999986
Q ss_pred CCCCCCCCCCcccceeeecCCCCccceEEEecCCCCCCHHHHHHHHhhccCCeEEEecccccccccccccccCCCCCCCe
Q 019528 108 CKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPR 187 (339)
Q Consensus 108 ~~~~~~~~~dYINAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~~~~e~~~~~kc~~YwP~~~~~~ 187 (339)
.. ..+.+||||||+|...++. ...||+||+|+++|+.|||+||||+.|.+|||||.+.|+| ...|..|||.+ |+.
T Consensus 781 ~~--s~s~~dYiNAS~I~DhDPR-~paYIAtQgPl~stiA~FWQmvWe~G~~vIV~Lt~l~Eng-v~qc~rYWPde-Gse 855 (1004)
T KOG0793|consen 781 EN--SHSHSDYINASPIMDHDPR-NPAYIATQGPLPSTIADFWQMVWESGCVVIVMLTPLAENG-VRQCYRYWPDE-GSE 855 (1004)
T ss_pred cc--CccccccccccccccCCCC-ccceeeccCCCchHHHHHHHHHHHcCcEEEEEecChhhcc-hhhhhhcCCCC-Ccc
Confidence 53 3678899999999988764 4689999999999999999999999999999999999986 57999999986 667
Q ss_pred eeeeeEEEEEEeeeecccEEEEEeEeecccCCCCceEEEEEeecccCCCCCCCChHHHHHHHHHHHcC-CCCCCCEEEEc
Q 019528 188 EFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL-PPNFGPIVVHC 266 (339)
Q Consensus 188 ~~g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~~-~~~~~PivVHC 266 (339)
.|+-|.|.+.++.....+|.+|.|.+++..+++ .|+|++|||..||+.|+|.+..++++|-+++++. .+...||||||
T Consensus 856 lyhiyEV~LVSEHIWceDfLVRSFYLKNlqtse-TRTvTQFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~ 934 (1004)
T KOG0793|consen 856 LYHIYEVNLVSEHIWCEDFLVRSFYLKNLQTSE-TRTVTQFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHC 934 (1004)
T ss_pred eeeeEEeeeehhhhhhhhHHHHHHHHhhccccc-ceeeeeeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEc
Confidence 899999999998887788999999999988877 5799999999999999999999999999999764 45568999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHH
Q 019528 267 SAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMVLSSFLVQSLVSFSYS 330 (339)
Q Consensus 267 s~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~y~~l~~yl~~ 330 (339)
|+|.|||||+|+||+++.+|.++. ..+||..++..||.||+|||+|.+||.|.+.++.+=+..
T Consensus 935 sdGaGRTG~YiliDmvl~Rm~kGa-keIDIaATlEHlRDQR~GmVaTkdQFef~l~aVAeEVna 997 (1004)
T KOG0793|consen 935 SDGAGRTGTYILIDMVLNRMAKGA-KEIDIAATLEHLRDQRPGMVATKDQFEFALTAVAEEVNA 997 (1004)
T ss_pred cCCCCccceeeeHHHHHHHHhccc-hhhhHHHHHHHHhhcCCcceeehhhhHHHHHHHHHHHHH
Confidence 999999999999999999998764 589999999999999999999999999999999876543
No 12
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=100.00 E-value=1.9e-61 Score=434.57 Aligned_cols=229 Identities=43% Similarity=0.723 Sum_probs=205.1
Q ss_pred CCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCccceEEEecCCCCCCHHHHHHHHhhccCCeEEEeccc
Q 019528 88 SKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRL 167 (339)
Q Consensus 88 ~kNR~~~i~p~d~sRV~L~~~~~~~~~~~dYINAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~~~ 167 (339)
+||||+|++|||++||+|.... .+.++|||||||+|+.. .++||+||+|+.+|++|||+|||+++|.+||||++.
T Consensus 1 ~knR~~~~~~~d~~rV~l~~~~---~~~~~yinA~~v~~~~~--~~~fI~tQ~P~~~t~~~FW~mv~~~~~~~IV~l~~~ 75 (231)
T cd00047 1 KKNRYKDILPYDHTRVKLKPDD---DEGSDYINASYIDGYNP--PKAYIATQGPLPNTVEDFWRMVWEQKVPVIVMLTEL 75 (231)
T ss_pred CCCCCCCCCCCCCCEEEccCCC---CCCCCcEEeeeEecCCC--CcceEEcCCCChhhHHHHHHHHHhcCCCEEEEcccc
Confidence 5899999999999999998532 25689999999999864 369999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCCCeeeeeeEEEEEEeeeecccEEEEEeEeecccCCCCceEEEEEeecccCCCCCCCChHHHHH
Q 019528 168 VDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVRE 247 (339)
Q Consensus 168 ~e~~~~~kc~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~~~~Wpd~~vP~~~~~~~~ 247 (339)
.|.+ .++|.+|||.+.+...+|.|+|+++++... .+++.|+|+|++.+.+. .+.|+||||.+|||+++|.+...+++
T Consensus 76 ~e~~-~~~~~~Ywp~~~~~~~~g~~~V~~~~~~~~-~~~~~~~l~i~~~~~~~-~~~V~~~~~~~W~d~~~p~~~~~~~~ 152 (231)
T cd00047 76 VEKG-REKCAQYWPEEEGSLTYGDITVTLVSEEKL-DDYTVRTLKLSNTGTGE-TRTVTHFQYTGWPDHGVPESPDSLLD 152 (231)
T ss_pred ccCC-CccCccCCCCCCCCeEecCEEEEEEEEEEc-CCEEEEEEEEEECCCCC-ceEEEEEeECCCCCCCccCChHHHHH
Confidence 8865 579999999876788999999999988774 78999999999876544 67999999999999999999899999
Q ss_pred HHHHHHcCC--CCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCChHHHHHHHHHHH
Q 019528 248 ILKRIYNLP--PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMVLSSFLVQSLV 325 (339)
Q Consensus 248 ~~~~~~~~~--~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~y~~l~ 325 (339)
+++.++... ...+||+|||++|+||||+|||++++++++..+. .+|+.++++.||++|+++|++.+||.|||.+++
T Consensus 153 ~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~--~~~~~~~v~~iR~~R~~~v~~~~Qy~f~~~~l~ 230 (231)
T cd00047 153 LLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEG--VVDIFQTVKELRSQRPGMVQTEEQYIFLYRAIL 230 (231)
T ss_pred HHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcC--CCCHHHHHHHHHhccccccCCHHHHHHHHHHHh
Confidence 998877653 2348999999999999999999999999998654 799999999999999999999999999999986
Q ss_pred H
Q 019528 326 S 326 (339)
Q Consensus 326 ~ 326 (339)
+
T Consensus 231 ~ 231 (231)
T cd00047 231 E 231 (231)
T ss_pred C
Confidence 3
No 13
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-61 Score=420.46 Aligned_cols=242 Identities=34% Similarity=0.544 Sum_probs=201.0
Q ss_pred cceeecCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCccceEEEecCCCCCCHHHHHHHHhhc
Q 019528 77 GCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQY 156 (339)
Q Consensus 77 ~~~~a~~~~n~~kNR~~~i~p~d~sRV~L~~~~~~~~~~~dYINAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~ 156 (339)
++.....+.|..||||.||+||++|||.|+.. .+.+||||||||+... .+|||||||+++|+.|||+|||+.
T Consensus 44 s~~~sls~~~~~rNRYsnIvPYe~tRV~Lk~~----k~~~DYINAS~ik~~~----~~yIAtQgP~~~t~ddFW~mvw~n 115 (302)
T COG5599 44 SDDTSLSSTNYARNRYSNIVPYEHTRVHLKYG----KSINDYINASYIKTPR----GKYIATQGPKPETIDDFWKMVWHN 115 (302)
T ss_pred ccccccCccccccccccccccccCceeeccCC----CchhhcccceeeecCC----CceEEecCCCCchHHHHHHHHHhc
Confidence 34455678899999999999999999999964 2578999999999975 259999999999999999999999
Q ss_pred cC--CeEEEecccccccccccccccCCCC-CCCeeeeeeEEEEEEeeee-cccEEEEEeEeecccCCCCceEEEEEeecc
Q 019528 157 HC--PVIVMLTRLVDNYKMVKCGDYFQAE-DGPREFGNIGIVTKWIKTT-ETALVLRNLEVNYKESEEPPMSVLHIQYPE 232 (339)
Q Consensus 157 ~v--~~IVmL~~~~e~~~~~kc~~YwP~~-~~~~~~g~~~V~~~~~~~~-~~~~~~r~l~v~~~~~~~~~~~v~h~~~~~ 232 (339)
.. .+||||+++.|.+ ++||.+|||.. .....+|...+..++.+.. ...+..+.++++... +. ++.|+||+|.+
T Consensus 116 ~~~~gvIVmLt~l~E~~-rekc~qYWp~~~~~~~~~G~~v~~~~~~e~~~d~~~~~~~f~L~~~~-~~-~k~Ihhf~y~n 192 (302)
T COG5599 116 VPNNGVIVMLTSLPEYN-REKCDQYWPLGYDDTLIIGLRVIKQKKYELFNDNIVNVHNFELTSIN-GP-PKKIHHFQYIN 192 (302)
T ss_pred CCCceEEEEecChHHHh-HHHHhhhCCCCcCcceeeeeEEEEEecccccccceeeeeecccccCC-CC-ccEEEEEEecC
Confidence 88 8999999999987 69999999954 3456788666655544332 244678899998765 33 46999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcC--CC-----CCCCHHHHHHHHHH
Q 019528 233 WPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVG--DM-----SALDLANTVKVFRS 305 (339)
Q Consensus 233 Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~--~~-----~~~dv~~~v~~lR~ 305 (339)
|+|.+.| +...+.++++.+...+.+.+|++||||||+||||||+|+|.+++..... +. ..--|+++|..||+
T Consensus 193 W~D~~~p-~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~LRs 271 (302)
T COG5599 193 WVDFNVP-DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRS 271 (302)
T ss_pred ccccCCc-CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHHHHH
Confidence 9999999 7788888888887665456999999999999999999999998765422 00 11238899999999
Q ss_pred hcccCCCChHHHHHHHHHHHHHHHH
Q 019528 306 QRIGMVQTMVLSSFLVQSLVSFSYS 330 (339)
Q Consensus 306 qR~~~Vqt~~Qy~F~y~~l~~yl~~ 330 (339)
||+.|||+.+||.|||.+++++..+
T Consensus 272 QRmkmVQn~~Qf~flY~~~~~l~~~ 296 (302)
T COG5599 272 QRMKMVQNKTQFKFLYDAFLELNKS 296 (302)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999844
No 14
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=100.00 E-value=3.1e-59 Score=419.87 Aligned_cols=232 Identities=34% Similarity=0.625 Sum_probs=202.3
Q ss_pred CCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCccceEEEecCCCCCCHHHHHHHHhhccCCeEEEec
Q 019528 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLT 165 (339)
Q Consensus 86 n~~kNR~~~i~p~d~sRV~L~~~~~~~~~~~dYINAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~ 165 (339)
|.+|||+.||+|||++||+|.+. .+..||||||||+++.. .++||+||+|+++|++|||+|||+++|.+||||+
T Consensus 1 n~~knR~~~~~~~d~~rv~l~~~----~~~~~yi~A~~v~~~~~--~~~~I~~q~P~~~t~~~FW~mv~~~~~~~Iv~L~ 74 (235)
T PF00102_consen 1 NREKNRSPDILPYDDSRVKLNPS----PGDSDYINASYVDGYKN--GKKFIVTQAPMPDTIEDFWQMVWEQKVQIIVMLC 74 (235)
T ss_dssp GGGGSSSTTS-BBTTTEEETTTT----TTSTTEESEEEEEESSS--TEEEEEEES-SGGGHHHHHHHHHHTTBSEEEEES
T ss_pred CCccCCCCCCCcCcceEEEecCC----CCccchhhhhhhccccc--hhhheeecccccccccceehheeeccccceeccc
Confidence 78899999999999999999532 23467999999998853 4799999999999999999999999999999999
Q ss_pred ccccccccccccccCCCC-CCCeeeeeeEEEEE-EeeeecccEEEEEeEeecccCCCCceEEEEEeecccCCCCCCCChH
Q 019528 166 RLVDNYKMVKCGDYFQAE-DGPREFGNIGIVTK-WIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTL 243 (339)
Q Consensus 166 ~~~e~~~~~kc~~YwP~~-~~~~~~g~~~V~~~-~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~~~~Wpd~~vP~~~~ 243 (339)
+..|.+ ..+|.+|||.+ ++...+|.|+|++. ........+++|.|+|++.+.+...+.+.||||.+||++++|.+..
T Consensus 75 ~~~e~~-~~~~~~y~P~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~v~~~~~~~W~~~~~P~~~~ 153 (235)
T PF00102_consen 75 SFDESG-DEKCDQYWPLKEGESLKFGDYTVKCKEKIEENSKHYTVRKLEVTNGKSKKKSRTVTHFHYTNWPDDGVPPSPE 153 (235)
T ss_dssp BSEETT-EESS--TSTSSSSSEEEETTEEEEEEEEEEEEESSEEEEEEEEEETTTTEEEEEEEEEEEESSSSSSSGSSSH
T ss_pred cccccc-ccccccccccccccccccccccccccccccccccceEEeeccccccccccccccccceeeeeccccccccccc
Confidence 998865 47999999954 56789999999999 6664567899999999987665335799999999999999999999
Q ss_pred HHHHHHHHHHcCC-CCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCChHHHHHHHH
Q 019528 244 AVREILKRIYNLP-PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMVLSSFLVQ 322 (339)
Q Consensus 244 ~~~~~~~~~~~~~-~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~y~ 322 (339)
.++++++.+.... ...+||+|||++|+||||+||+++++++++..++ .+||.++++.||++|+|+|++.+||.|||.
T Consensus 154 ~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~--~~~v~~~~~~lR~~R~~~i~~~~qy~f~~~ 231 (235)
T PF00102_consen 154 SFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEG--EVDVFEIVKKLRQQRPGAIQSPEQYRFCYM 231 (235)
T ss_dssp HHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHS--EECHHHHHHHHHTTSTTSSSSHHHHHHHHH
T ss_pred hhhhhhhhccccccCCccceEeecccccccccccccchhhcccccccc--chhhHHHHHHHHhhCCCccCCHHHHHHHHH
Confidence 9999998876554 3448999999999999999999999999999765 699999999999999999999999999999
Q ss_pred HHHH
Q 019528 323 SLVS 326 (339)
Q Consensus 323 ~l~~ 326 (339)
++++
T Consensus 232 ~~~e 235 (235)
T PF00102_consen 232 AVLE 235 (235)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9986
No 15
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-57 Score=460.62 Aligned_cols=288 Identities=31% Similarity=0.481 Sum_probs=241.1
Q ss_pred CCCCCCCChhHHhHHHHHHHHH-------------HHH----hh----cchHHHHHHHHHhHhcCCCCccccccceeecC
Q 019528 25 FPPRISLTADQYNHCSEALSFF-------------KEK----LQ----NKSREISQEFARLQASRIKPSEMARGCTVALD 83 (339)
Q Consensus 25 ~p~~~~~~~~~~~~~~~~~~~~-------------~~~----~~----~~~~~l~~Ef~~l~~~~~~~~~~~~~~~~a~~ 83 (339)
-...+.+|.+|+-.+++++... +.. .. ....++++||+.|.......+. ...|.+
T Consensus 775 QR~~mVQt~eQYiFi~~AllE~~~~G~T~i~~~~~~~~~~~l~~~~p~~~~t~le~EF~~L~~~~~~~~~----~~~~~l 850 (1087)
T KOG4228|consen 775 QRNNMVQTEEQYIFIHEALLEACLCGDTEVPASTLAPYSQKLKRIDPPENKTGLEEEFKTLNSCKPRTRM----MICGNL 850 (1087)
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHhccCCCCCCCcchHHHHHHHhhccccchh----hhcccc
Confidence 3567889999999999887532 221 11 1135899999999977654332 222889
Q ss_pred CCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCccceEEEecCCCCCCHHHHHHHHhhccCCeEEE
Q 019528 84 GVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVM 163 (339)
Q Consensus 84 ~~n~~kNR~~~i~p~d~sRV~L~~~~~~~~~~~dYINAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVm 163 (339)
|+|+.|||+.+|+|||++||.|.+..+ .++||||||+|+||.. +..|||||+|+.+|++|||||||+++|.+|||
T Consensus 851 ~~N~~KNR~~~i~P~d~~rv~L~~~~G---~~sdYINAs~idgy~~--~~~fivtq~PL~~T~~DFWrmi~d~~~tsiVm 925 (1087)
T KOG4228|consen 851 PENKSKNRQVNILPYDRNRVILIPTHG---ESSDYINASFIDGYRQ--PKAFIVTQGPLAETVEDFWRMIWDQNVTSIVM 925 (1087)
T ss_pred chhcccccccccCCchhcccceeccCC---CcccccchhhhcccCC--cceEEEecCCcccchHHHHHHhhccceeEEEE
Confidence 999999999999999999999998765 4889999999999964 47999999999999999999999999999999
Q ss_pred ecccccccccccccccCCCCCCCeeeeeeEEEEEEeeeecccEEEEEeEeecccCCCCceEEEEEeecccCCCCCCCCh-
Q 019528 164 LTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDT- 242 (339)
Q Consensus 164 L~~~~e~~~~~kc~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~~~~Wpd~~vP~~~- 242 (339)
|+++.+. ++|.+|||. .+...||.+.|+...... ...++.|.|.|++...+. .|+|.||||++||..+.|...
T Consensus 926 L~~l~~~---~~C~qyw~~-~g~~~yg~i~Ve~~~~~~-~~~~t~r~f~i~n~~~~~-~r~v~qfq~~~WP~~~~~p~~~ 999 (1087)
T KOG4228|consen 926 LTELKHP---EKCPQYWPP-EGSQRYGPIEVEDMNEHI-NPQYTAREFGVTNEREKQ-SRTVRQFQFTGWPEYGKPPQSK 999 (1087)
T ss_pred ecccCcc---cccccccCC-cCceecCcEEEEeccccc-chhhhhhhheeeeccccC-ceEEEEEEecCCcccCcCCCCc
Confidence 9999874 799999998 577899999999988776 467889999999876544 689999999999998876554
Q ss_pred HHHHHHHHHHHc--CCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCChHHHHHH
Q 019528 243 LAVREILKRIYN--LPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMVLSSFL 320 (339)
Q Consensus 243 ~~~~~~~~~~~~--~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~ 320 (339)
..+..+.....+ .....+|++|||++|+||||+||||.+++++++.++ .+||+++|+.||.+|++||++.+||.||
T Consensus 1000 ~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~--~vDVfq~vk~Lr~~rp~mv~t~~QY~fc 1077 (1087)
T KOG4228|consen 1000 GPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKEG--VVDVFQTVKTLRFQRPGMVDTSDQYQFC 1077 (1087)
T ss_pred chhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcC--ceeeehhhhhhhhcCccccCcHHHHHHH
Confidence 444444433322 223359999999999999999999999999999776 8999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 019528 321 VQSLVSFSY 329 (339)
Q Consensus 321 y~~l~~yl~ 329 (339)
|+++++|+.
T Consensus 1078 Ydv~~~y~~ 1086 (1087)
T KOG4228|consen 1078 YDVALEYLG 1086 (1087)
T ss_pred HHHHHHhhc
Confidence 999999985
No 16
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=100.00 E-value=1.8e-53 Score=404.09 Aligned_cols=219 Identities=17% Similarity=0.234 Sum_probs=179.2
Q ss_pred CCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCccceEEEecCCCC--CCHHHHHHHHhhccCCeEEEeccc
Q 019528 90 NRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLP--HTYEDFWEMVIQYHCPVIVMLTRL 167 (339)
Q Consensus 90 NR~~~i~p~d~sRV~L~~~~~~~~~~~dYINAs~v~~~~~~~~~~~I~tQ~Pl~--~T~~dFW~MV~e~~v~~IVmL~~~ 167 (339)
--.++|+|+|||||+|. +++|||||||+ +.. ++.+|++|.|+. +|++|||+||||++|.+|||||..
T Consensus 302 ~~~~~I~~~~~TrV~ls--------~g~yI~ANyI~-~~~--k~~aIa~QYP~nt~eTieDFWrMVWEn~~~VIVMLT~l 370 (535)
T PRK15375 302 FAVSSIPINQQTQVKLS--------DGMPVPVNTLT-FDG--KPVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSE 370 (535)
T ss_pred HHhcccCccccceEEcC--------CCCccccceee-ecC--ccceEeccCCCCchhhHHHHHHHHHHcCCCEEEEeecc
Confidence 33569999999999997 26999999999 543 357999999975 899999999999999999999999
Q ss_pred ccccccccccccCCCCCCCeeeeeeEEEEEEeeeecccEEEEEeEeecccCCCCceEEEEEeecccCCCCCCCChHHHHH
Q 019528 168 VDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVRE 247 (339)
Q Consensus 168 ~e~~~~~kc~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~~~~Wpd~~vP~~~~~~~~ 247 (339)
.|.+ ..+|.+||+ ++..||+|.|++.+++....++.+|.+.+.-... +..+.|.||||++|||||+|.+...+++
T Consensus 371 ~E~g-~~KC~pYW~---~s~tYGdItVts~seesls~g~iIR~f~L~Ik~~-E~R~tV~QFHyTnWPDHGVPpST~~Lle 445 (535)
T PRK15375 371 DQMQ-AKQLPPYFR---GSYTFGEVHTNSQKVSSASQGEAIDQYNMQLSCG-EKRYTIPVLHVKNWPDHQPLPSTDQLEY 445 (535)
T ss_pred ccCc-ccccCccCC---CcceeccEEEEEEEEEeccCCceEEEEEEEEecC-CceeEEEEEEeCCCCCCCCCCChHHHHH
Confidence 8865 589999995 5678999999988876543456677765543332 3345899999999999999988888999
Q ss_pred HHHHHHcCCC---------CCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhccc-CCCChHHH
Q 019528 248 ILKRIYNLPP---------NFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIG-MVQTMVLS 317 (339)
Q Consensus 248 ~~~~~~~~~~---------~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~-~Vqt~~Qy 317 (339)
|++.++.... +.+++|||||||+||||||||++.+ ... +.+++.++|+.||.+|++ |||+.+||
T Consensus 446 Lvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~ll----k~~--~~~sle~IV~dlR~qRng~MVQt~eQy 519 (535)
T PRK15375 446 LADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVL----KDN--PHSNLEQVRADFRNSRNNRMLEDASQF 519 (535)
T ss_pred HHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHH----hcc--ccCCHHHHHHHHHhcCCccccccHHHH
Confidence 9888765421 1234489999999999999999763 222 369999999999999999 99999999
Q ss_pred HHHHHHHHHHHHH
Q 019528 318 SFLVQSLVSFSYS 330 (339)
Q Consensus 318 ~F~y~~l~~yl~~ 330 (339)
.|+++.-...+.+
T Consensus 520 ~~l~~~~~~~~~~ 532 (535)
T PRK15375 520 VQLKAMQAQLLMT 532 (535)
T ss_pred HHHHHHHHHHhhh
Confidence 9999987776643
No 17
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-51 Score=396.26 Aligned_cols=241 Identities=30% Similarity=0.453 Sum_probs=192.5
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCccceEEEecCCCCCCHHHHHHHHhhccCCeEE
Q 019528 83 DGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIV 162 (339)
Q Consensus 83 ~~~n~~kNR~~~i~p~d~sRV~L~~~~~~~~~~~dYINAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~v~~IV 162 (339)
...|..||||.||.|||++||+|... ...||||||||+++.. . +.||+||+|+++|.+|||+|||++++..||
T Consensus 124 ~~~~~~kNr~~dv~~~d~~rV~l~~~-----~~~dyI~A~~v~~~~~-~-~~~I~tQ~Pl~~t~~dFW~mv~~~k~~~Iv 196 (415)
T KOG0789|consen 124 FLKNMDKNRYSDVQCLDHTRVKLKPP-----QDKDYIHASKIYFPKG-P-RTAILTQAPLSKTTEDFWRMVFEEKVESVV 196 (415)
T ss_pred hhccccccccCCcCcccCCeeecCCC-----CCcccchhhccCCcCC-C-cCceecCCCCcccHHHHHHHHHHcCCCEEE
Confidence 45688899999999999999999842 1579999999999752 2 689999999999999999999999999999
Q ss_pred EecccccccccccccccCCCCCC-CeeeeeeEEEEEEeeeec-----ccEEEEEeEeecccCCCCceEEEEEeecccCCC
Q 019528 163 MLTRLVDNYKMVKCGDYFQAEDG-PREFGNIGIVTKWIKTTE-----TALVLRNLEVNYKESEEPPMSVLHIQYPEWPDH 236 (339)
Q Consensus 163 mL~~~~e~~~~~kc~~YwP~~~~-~~~~g~~~V~~~~~~~~~-----~~~~~r~l~v~~~~~~~~~~~v~h~~~~~Wpd~ 236 (339)
|||...|.+ ..+|.+|||.+.| ...|+.+...+....... ..+....+.+...++...++.|.|+||.+|||+
T Consensus 197 ml~~~~E~~-~~kc~~Y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~WPd~ 275 (415)
T KOG0789|consen 197 LLCSDEELG-AAECASYFPSKRGVKLTFLEFGKKFVENRKVEMKQQDQTSTVGLLLLVLPEGLEISSSVVHYHYINWPDH 275 (415)
T ss_pred Eecchhhcc-HHHHhhcCcccCCCeeeecccceeEEEeeeeecccccccceeeEEEeecCCCccccceEEEEeeCCCccc
Confidence 999999986 6899999998764 446766644333222111 222322222222222222359999999999999
Q ss_pred CCCCChHHHHHHHHH-HHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCChH
Q 019528 237 GVPRDTLAVREILKR-IYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMV 315 (339)
Q Consensus 237 ~vP~~~~~~~~~~~~-~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~~ 315 (339)
|+|.+...++.+++. ........+|++||||+|+||||||+++++++.++..+ ....++.++++.+|.||+++||+..
T Consensus 276 ~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~-~~~~~~~~~~~~iR~qR~~~vqt~~ 354 (415)
T KOG0789|consen 276 GAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGP-EGEPPIDEILREIRYQRPGAVQSPL 354 (415)
T ss_pred cCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcC-CCCccHHHHHHHHHHHhhhcccchh
Confidence 999999999999874 22223344899999999999999999999888887643 3468899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcc
Q 019528 316 LSSFLVQSLVSFSYSLF 332 (339)
Q Consensus 316 Qy~F~y~~l~~yl~~~~ 332 (339)
||.|+|.++++|+..+.
T Consensus 355 Qy~f~~~~~~~~~~~~~ 371 (415)
T KOG0789|consen 355 QYLFIYAATLKYIKKVS 371 (415)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 99999999999999743
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.91 E-value=3.2e-24 Score=168.15 Aligned_cols=102 Identities=40% Similarity=0.704 Sum_probs=89.5
Q ss_pred EEEEEeecccCCCCCCCChHHHHHHHHHHHcCC---CCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Q 019528 224 SVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP---PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTV 300 (339)
Q Consensus 224 ~v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~~~---~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v 300 (339)
++.||||.+|||+++|.....++++++.+.... ...+||+|||++|+||||+||+++.++.++..+ ...+++.+++
T Consensus 1 ~~~~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~-~~~~~~~~~~ 79 (105)
T smart00404 1 TVKHYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESE-TGEVDIFQTV 79 (105)
T ss_pred CeEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhc-CCCCCHHHHH
Confidence 378999999999999988889999888776532 224899999999999999999999999988764 1379999999
Q ss_pred HHHHHhcccCCCChHHHHHHHHHHHH
Q 019528 301 KVFRSQRIGMVQTMVLSSFLVQSLVS 326 (339)
Q Consensus 301 ~~lR~qR~~~Vqt~~Qy~F~y~~l~~ 326 (339)
+.+|++|++++++.+||.|+|.++++
T Consensus 80 ~~ir~~r~~~~~~~~q~~~~~~~~~~ 105 (105)
T smart00404 80 KELRKQRPGMVQTFEQYLFLYRALLE 105 (105)
T ss_pred HHHHhhhhhhCCcHHHHHHHHHHHhC
Confidence 99999999999999999999999863
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.91 E-value=3.2e-24 Score=168.15 Aligned_cols=102 Identities=40% Similarity=0.704 Sum_probs=89.5
Q ss_pred EEEEEeecccCCCCCCCChHHHHHHHHHHHcCC---CCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Q 019528 224 SVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP---PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTV 300 (339)
Q Consensus 224 ~v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~~~---~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v 300 (339)
++.||||.+|||+++|.....++++++.+.... ...+||+|||++|+||||+||+++.++.++..+ ...+++.+++
T Consensus 1 ~~~~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~-~~~~~~~~~~ 79 (105)
T smart00012 1 TVKHYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESE-TGEVDIFQTV 79 (105)
T ss_pred CeEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhc-CCCCCHHHHH
Confidence 378999999999999988889999888776532 224899999999999999999999999988764 1379999999
Q ss_pred HHHHHhcccCCCChHHHHHHHHHHHH
Q 019528 301 KVFRSQRIGMVQTMVLSSFLVQSLVS 326 (339)
Q Consensus 301 ~~lR~qR~~~Vqt~~Qy~F~y~~l~~ 326 (339)
+.+|++|++++++.+||.|+|.++++
T Consensus 80 ~~ir~~r~~~~~~~~q~~~~~~~~~~ 105 (105)
T smart00012 80 KELRKQRPGMVQTFEQYLFLYRALLE 105 (105)
T ss_pred HHHHhhhhhhCCcHHHHHHHHHHHhC
Confidence 99999999999999999999999863
No 20
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.66 E-value=6e-16 Score=131.62 Aligned_cols=135 Identities=21% Similarity=0.367 Sum_probs=97.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhccCCeEEEecccccccccccccccCCCCCCCeeeeeeEEEEEEeeeecccEEEEEeE
Q 019528 133 SQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLE 212 (339)
Q Consensus 133 ~~~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~~~~e~~~~~kc~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~ 212 (339)
.+||++-+|++++..+|....-+.++..||.++.. +|+.+ .+
T Consensus 16 ~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~-----------~~~~~---------------------~~------ 57 (166)
T PTZ00242 16 FKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGP-----------TYDAE---------------------LL------ 57 (166)
T ss_pred eEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCC-----------CCCHH---------------------HH------
Confidence 38999999999999999999999999999988541 11100 00
Q ss_pred eecccCCCCceEEEEEeecccC--CCCCCCC--hHHHHHHHHHHHcC-CCCCCCEEEEcCCCCchHHHHHHHHHHHHHHH
Q 019528 213 VNYKESEEPPMSVLHIQYPEWP--DHGVPRD--TLAVREILKRIYNL-PPNFGPIVVHCSAGIGRTGAYCTIHNTVQRIL 287 (339)
Q Consensus 213 v~~~~~~~~~~~v~h~~~~~Wp--d~~vP~~--~~~~~~~~~~~~~~-~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~ 287 (339)
...+++|..|| |.++|.. ...+++++...... ....+||+|||.+|+||||+||++.. +.
T Consensus 58 -----------~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL----~~ 122 (166)
T PTZ00242 58 -----------EKNGIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALAL----VE 122 (166)
T ss_pred -----------HHCCCEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHH----HH
Confidence 11123344455 6666633 24556666554432 12338999999999999999999863 23
Q ss_pred cCCCCCCCHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 019528 288 VGDMSALDLANTVKVFRSQRIGMVQTMVLSSFLVQSL 324 (339)
Q Consensus 288 ~~~~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~y~~l 324 (339)
.+ .+++.++++.+|++|++++ +..|+.|+....
T Consensus 123 ~~---~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~ 155 (166)
T PTZ00242 123 YG---GMEPLDAVGFVREKRKGAI-NQTQLQFLKKYK 155 (166)
T ss_pred hC---CCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHH
Confidence 23 4799999999999999999 589999997654
No 21
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.48 E-value=3.5e-13 Score=118.90 Aligned_cols=133 Identities=17% Similarity=0.287 Sum_probs=95.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhccCCeEEEecccccccccccccccCCCCCCCeeeeeeEEEEEEeeeecccEEEEEeE
Q 019528 133 SQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLE 212 (339)
Q Consensus 133 ~~~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~~~~e~~~~~kc~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~ 212 (339)
-+||++-+|+..+..+|..-..+.++..||-+|... | +.+ .+
T Consensus 92 ~rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~----------Y-d~~---------------------~~------ 133 (241)
T PTZ00393 92 IKILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERT----------Y-NDG---------------------EI------ 133 (241)
T ss_pred eeEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCC----------C-CHH---------------------HH------
Confidence 489999999999999999999999999999986421 2 110 00
Q ss_pred eecccCCCCceEEEEEeecccCCCCCCCCh--HHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCC
Q 019528 213 VNYKESEEPPMSVLHIQYPEWPDHGVPRDT--LAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGD 290 (339)
Q Consensus 213 v~~~~~~~~~~~v~h~~~~~Wpd~~vP~~~--~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~ 290 (339)
... .+.+++ ..|||+++|... ..+++++..... ..++|+|||.+|+||||+++|+..+ + .
T Consensus 134 ---~~~-----GI~~~~-lpipDg~aPs~~~i~~~l~~i~~~l~---~g~~VaVHC~AGlGRTGtl~AayLI-~---~-- 195 (241)
T PTZ00393 134 ---TSA-----GINVHE-LIFPDGDAPTVDIVSNWLTIVNNVIK---NNRAVAVHCVAGLGRAPVLASIVLI-E---F-- 195 (241)
T ss_pred ---HHc-----CCeEEE-eecCCCCCCCHHHHHHHHHHHHHHHh---cCCeEEEECCCCCCHHHHHHHHHHH-H---c--
Confidence 000 222222 368899998432 234555544332 2378999999999999999887542 2 2
Q ss_pred CCCCCHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 019528 291 MSALDLANTVKVFRSQRIGMVQTMVLSSFLVQSL 324 (339)
Q Consensus 291 ~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~y~~l 324 (339)
-++..+++..+|+.|++++ +..|+.|+.+.-
T Consensus 196 --GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~ 226 (241)
T PTZ00393 196 --GMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYK 226 (241)
T ss_pred --CCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Confidence 2789999999999999999 578999986643
No 22
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.35 E-value=8.6e-12 Score=106.62 Aligned_cols=99 Identities=23% Similarity=0.295 Sum_probs=76.4
Q ss_pred EEEEeecccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 019528 225 VLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFR 304 (339)
Q Consensus 225 v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR 304 (339)
+.|+++ -.+|.+.| ++..+.+|++.+..... .+-|.|||-+|.||||+++|..++.. . .+.-.++|..||
T Consensus 116 i~h~~l-~f~Dg~tP-~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liAc~lmy~-~------g~ta~eaI~~lR 185 (225)
T KOG1720|consen 116 IDHHDL-FFADGSTP-TDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIACYLMYE-Y------GMTAGEAIAWLR 185 (225)
T ss_pred ceeeee-ecCCCCCC-CHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHHHHHHHH-h------CCCHHHHHHHHH
Confidence 344433 35777777 67777888877766554 48999999999999999999876544 1 477889999999
Q ss_pred HhcccCCCChHHHHHHHHHHHHHHHHccc
Q 019528 305 SQRIGMVQTMVLSSFLVQSLVSFSYSLFL 333 (339)
Q Consensus 305 ~qR~~~Vqt~~Qy~F~y~~l~~yl~~~~~ 333 (339)
..|||||++.+|+..+++--.-++....+
T Consensus 186 ~~RpG~V~gpqQ~~l~~~q~~~~~~~~~~ 214 (225)
T KOG1720|consen 186 ICRPGAVIGPQQHKLLHKQRDLWLAGDLF 214 (225)
T ss_pred hcCCccccCHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999998876645554443
No 23
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.16 E-value=2.4e-10 Score=94.07 Aligned_cols=88 Identities=16% Similarity=0.207 Sum_probs=66.3
Q ss_pred EEEEEeecccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 019528 224 SVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVF 303 (339)
Q Consensus 224 ~v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~l 303 (339)
...|+.+.+|++...+.....+++++...... .+||+|||.+|.||||++++...+.. . ..++.++++.+
T Consensus 49 ~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~---~~~vlVHC~~G~~Rs~~~~~~~l~~~----~---~~~~~~a~~~v 118 (139)
T cd00127 49 NYLYVPILDLPSQDISKYFDEAVDFIDDAREK---GGKVLVHCLAGVSRSATLVIAYLMKT----L---GLSLREAYEFV 118 (139)
T ss_pred eEEEEEceeCCCCChHHHHHHHHHHHHHHHhc---CCcEEEECCCCCchhHHHHHHHHHHH----c---CCCHHHHHHHH
Confidence 67788888888555544445566666655443 37999999999999999998664332 2 47899999999
Q ss_pred HHhcccCCCChHHHHHHH
Q 019528 304 RSQRIGMVQTMVLSSFLV 321 (339)
Q Consensus 304 R~qR~~~Vqt~~Qy~F~y 321 (339)
|++|+.+..+..+...+.
T Consensus 119 r~~r~~~~~~~~~~~~l~ 136 (139)
T cd00127 119 KSRRPIISPNAGFMRQLK 136 (139)
T ss_pred HHHCCccCCCHHHHHHHH
Confidence 999999888887776553
No 24
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.02 E-value=1.5e-09 Score=93.75 Aligned_cols=91 Identities=24% Similarity=0.258 Sum_probs=66.6
Q ss_pred ccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCC
Q 019528 232 EWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMV 311 (339)
Q Consensus 232 ~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~~V 311 (339)
.++|+.+|+ ...+.+++..+.......+.|+|||..|+|||||++|+..++. .+ .....+.+.-+|..|++++
T Consensus 79 ~~~D~~~p~-~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~----~~--~~~~~~~i~~~~~~r~~~v 151 (180)
T COG2453 79 PILDGTVPD-LEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLY----GG--LSLADEAIAVKRRRRPGAV 151 (180)
T ss_pred eecCCCCCc-HHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHH----cC--CCCHHHHHHHHHhcCCccc
Confidence 678988884 3444444443333222225899999999999999999876543 12 4667788888999999999
Q ss_pred CChHHHHHHHHHHHHHHH
Q 019528 312 QTMVLSSFLVQSLVSFSY 329 (339)
Q Consensus 312 qt~~Qy~F~y~~l~~yl~ 329 (339)
.+..|+.|..+.....-.
T Consensus 152 ~~~~q~~~~~e~~~~~~~ 169 (180)
T COG2453 152 VTEIQHLFELEQELFRKK 169 (180)
T ss_pred ccHHHHHHHHHHHHHHhh
Confidence 999999999887765443
No 25
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.01 E-value=7.5e-09 Score=82.34 Aligned_cols=139 Identities=22% Similarity=0.401 Sum_probs=94.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhccCCeEEEecccccccccccccccCCCCCCCeeeeeeEEEEEEeeeecccEEEEEeE
Q 019528 133 SQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLE 212 (339)
Q Consensus 133 ~~~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~~~~e~~~~~kc~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~ 212 (339)
-+|++|-.|...|+..|-.-.-.+++..||-.|+..-+. .+. + ..+
T Consensus 17 MrFLIThnPtnaTln~fieELkKygvttvVRVCe~TYdt-------------~~l------------e--k~G------- 62 (173)
T KOG2836|consen 17 MRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPTYDT-------------TPL------------E--KEG------- 62 (173)
T ss_pred eEEEEecCCCchhHHHHHHHHHhcCCeEEEEecccccCC-------------chh------------h--hcC-------
Confidence 589999999999999999999999999999887642110 000 0 011
Q ss_pred eecccCCCCceEEEEEeecccC-CCCCCCChH---HHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHc
Q 019528 213 VNYKESEEPPMSVLHIQYPEWP-DHGVPRDTL---AVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILV 288 (339)
Q Consensus 213 v~~~~~~~~~~~v~h~~~~~Wp-d~~vP~~~~---~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~ 288 (339)
++..+|| +.|.|.... +.+++++.-.+..++ ..|-|||-+|+||+-+++|+.. ++.
T Consensus 63 ---------------I~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~-~cvavhcvaglgrapvlvalal----ie~ 122 (173)
T KOG2836|consen 63 ---------------ITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPG-CCVAVHCVAGLGRAPVLVALAL----IEA 122 (173)
T ss_pred ---------------ceEeecccccCCCCchHHHHHHHHHHHHHHhhCCC-CeEEEEeecccCcchHHHHHHH----HHc
Confidence 1234788 677775433 344444433333333 6799999999999999998753 222
Q ss_pred CCCCCCCHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHcccccccc
Q 019528 289 GDMSALDLANTVKVFRSQRIGMVQTMVLSSFLVQSLVSFSYSLFLIMHLS 338 (339)
Q Consensus 289 ~~~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~y~~l~~yl~~~~~~~~~~ 338 (339)
-....+.|..+|++|.|++.+. |. .||....-++.|+
T Consensus 123 ----gmkyedave~ir~krrga~n~k-ql--------~~lekyrpk~rlr 159 (173)
T KOG2836|consen 123 ----GMKYEDAVEMIRQKRRGAINSK-QL--------LYLEKYRPKMRLR 159 (173)
T ss_pred ----cccHHHHHHHHHHHhhccccHH-HH--------HHHHHhCccceee
Confidence 2667889999999999998664 44 3445544444444
No 26
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=98.96 E-value=1.3e-08 Score=83.89 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=58.2
Q ss_pred EEEEeecccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 019528 225 VLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFR 304 (339)
Q Consensus 225 v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR 304 (339)
+.++++ .++|.+.+.....+...++.+.......+||+|||.+|.||||+++++..+.. . ..++.++++.+|
T Consensus 45 ~~~~~i-pi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~----~---~~~~~~A~~~v~ 116 (138)
T smart00195 45 FTYLGV-PILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKY----R---NLSLNDAYDFVK 116 (138)
T ss_pred CEEEEE-ECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHH----h---CCCHHHHHHHHH
Confidence 444444 35553333233333333333332223337999999999999999998764322 2 378999999999
Q ss_pred HhcccCCCChHHHHHHH
Q 019528 305 SQRIGMVQTMVLSSFLV 321 (339)
Q Consensus 305 ~qR~~~Vqt~~Qy~F~y 321 (339)
+.|+++..+..|..-+.
T Consensus 117 ~~R~~~~p~~~~~~qL~ 133 (138)
T smart00195 117 DRRPIISPNFGFLRQLI 133 (138)
T ss_pred HHCCccCCCHhHHHHHH
Confidence 99999999988776553
No 27
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=98.70 E-value=9.2e-08 Score=78.10 Aligned_cols=72 Identities=21% Similarity=0.314 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCChHHHHHH
Q 019528 241 DTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMVLSSFL 320 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~ 320 (339)
....+.+++...... .++|+|||.+|+||||+++++..+.. . ..++.++++.+|+.|+.+..+..|+..+
T Consensus 58 ~~~~~~~~i~~~~~~---~~~VlVHC~~G~~RS~~v~~ayLm~~----~---~~~~~~A~~~v~~~rp~~~~~~~~~~~L 127 (133)
T PF00782_consen 58 HLDQAVEFIENAISE---GGKVLVHCKAGLSRSGAVAAAYLMKK----N---GMSLEEAIEYVRSRRPQINPNPSFIRQL 127 (133)
T ss_dssp GHHHHHHHHHHHHHT---TSEEEEEESSSSSHHHHHHHHHHHHH----H---TSSHHHHHHHHHHHSTTSTHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcc---cceeEEEeCCCcccchHHHHHHHHHH----c---CCCHHHHHHHHHHHCCCCCCCHHHHHHH
Confidence 344566666655433 27899999999999999988754322 2 3789999999999999998888877766
Q ss_pred HH
Q 019528 321 VQ 322 (339)
Q Consensus 321 y~ 322 (339)
+.
T Consensus 128 ~~ 129 (133)
T PF00782_consen 128 YE 129 (133)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 28
>PRK12361 hypothetical protein; Provisional
Probab=98.22 E-value=4.8e-06 Score=84.15 Aligned_cols=81 Identities=19% Similarity=0.194 Sum_probs=58.0
Q ss_pred CCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCCh
Q 019528 235 DHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTM 314 (339)
Q Consensus 235 d~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~ 314 (339)
|...| +.+.+.+.++.+.+.....++|+|||.+|.|||+++++...+ ..+. ..++.++++.+|+.|+.+..+.
T Consensus 152 D~~~p-~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm----~~~~--~~~~~eA~~~vr~~Rp~v~~n~ 224 (547)
T PRK12361 152 DHSVP-TLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLL----CKDP--DLTVEEVLQQIKQIRKTARLNK 224 (547)
T ss_pred CCCCC-cHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHH----Hhcc--CCCHHHHHHHHHHHCCCCCCCH
Confidence 55556 445554444444333223379999999999999999887543 2222 4789999999999999999999
Q ss_pred HHHHHHHH
Q 019528 315 VLSSFLVQ 322 (339)
Q Consensus 315 ~Qy~F~y~ 322 (339)
.|...+-+
T Consensus 225 ~q~~~l~~ 232 (547)
T PRK12361 225 RQLRALEK 232 (547)
T ss_pred HHHHHHHH
Confidence 98876543
No 29
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=97.95 E-value=1.1e-05 Score=67.64 Aligned_cols=125 Identities=19% Similarity=0.214 Sum_probs=55.5
Q ss_pred CCCcccceeeecCCCCccceEEEecCCCC------CCHHHHHHHHhhccCCeEEEecccccccccccccccCCCCCCCee
Q 019528 115 ARGYINASLISTSSSEKVSQFIATQGPLP------HTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPRE 188 (339)
Q Consensus 115 ~~dYINAs~v~~~~~~~~~~~I~tQ~Pl~------~T~~dFW~MV~e~~v~~IVmL~~~~e~~~~~kc~~YwP~~~~~~~ 188 (339)
.++.|+.+|++...-+.....-+|-.|=. ...+.=-.-+..+.+..||.|+...|... .+ +|.
T Consensus 23 ~~~P~~i~~l~~s~~~~~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~-l~----Vp~------ 91 (168)
T PF05706_consen 23 EQTPIQIDWLPLSPVNCSGFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELAR-LG----VPD------ 91 (168)
T ss_dssp BTS----EEEE-GGGT-SSEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHH-TT-----TT------
T ss_pred cCCceeeeeecccccCCcceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHH-cC----Ccc------
Confidence 35678888888643322335667777742 12222234566788999999988766431 00 111
Q ss_pred eeeeEEEEEEeeeecccEEEEEeEeecccCCCCceEEEEEeecccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCC
Q 019528 189 FGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSA 268 (339)
Q Consensus 189 ~g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~ 268 (339)
++. .. ... ...+. || -+||.++| +...+.+++..+...-.+...|+|||..
T Consensus 92 L~~--------~~--------------~~~---Gi~~~--h~-PI~D~~aP-d~~~~~~i~~eL~~~L~~g~~V~vHC~G 142 (168)
T PF05706_consen 92 LGE--------AA--------------QAR---GIAWH--HL-PIPDGSAP-DFAAAWQILEELAARLENGRKVLVHCRG 142 (168)
T ss_dssp HHH--------HH--------------HHT---T-EEE--E-----TTS----HHHHHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHH--------HH--------------HHc---CCEEE--ec-CccCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 110 00 001 11333 33 68899999 4555555555443322223689999999
Q ss_pred CCchHHHHHHH
Q 019528 269 GIGRTGAYCTI 279 (339)
Q Consensus 269 GvGRtG~f~ai 279 (339)
|.||||+++|.
T Consensus 143 GlGRtGlvAAc 153 (168)
T PF05706_consen 143 GLGRTGLVAAC 153 (168)
T ss_dssp SSSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99999998875
No 30
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=97.87 E-value=4e-05 Score=65.08 Aligned_cols=85 Identities=21% Similarity=0.262 Sum_probs=47.3
Q ss_pred EEEEEeecccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 019528 224 SVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVF 303 (339)
Q Consensus 224 ~v~h~~~~~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~l 303 (339)
.+.|+....|.+..++.+.+.+.+.++.+.... +.||+|||..|..|||+.+|+ ++++. ..++.+++.++
T Consensus 58 ~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~--n~PvLiHC~~G~~rTG~vvg~---lRk~Q-----~W~~~~i~~Ey 127 (164)
T PF03162_consen 58 KLIHIPMSSSKDPWVPISEEQVAEALEIILDPR--NYPVLIHCNHGKDRTGLVVGC---LRKLQ-----GWSLSSIFDEY 127 (164)
T ss_dssp EEEE-------GGG----HHHHHHHHHHHH-GG--G-SEEEE-SSSSSHHHHHHHH---HHHHT-----TB-HHHHHHHH
T ss_pred eEEEeccccccCccccCCHHHHHHHHHHHhCCC--CCCEEEEeCCCCcchhhHHHH---HHHHc-----CCCHHHHHHHH
Confidence 555666666655456666777777777664432 379999999999999999985 33332 48899999999
Q ss_pred HHhccc-CCCChHHHH
Q 019528 304 RSQRIG-MVQTMVLSS 318 (339)
Q Consensus 304 R~qR~~-~Vqt~~Qy~ 318 (339)
|.-=.. .-...+||+
T Consensus 128 ~~f~~~~~~~~~~~fI 143 (164)
T PF03162_consen 128 RRFAGPKIRYLDEQFI 143 (164)
T ss_dssp HHHHGGG--HHHHHHH
T ss_pred HHhcCCCCcHHHHHHH
Confidence 875433 223344443
No 31
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.50 E-value=0.00022 Score=59.58 Aligned_cols=50 Identities=26% Similarity=0.470 Sum_probs=33.7
Q ss_pred ccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHH
Q 019528 232 EWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTV 283 (339)
Q Consensus 232 ~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~ 283 (339)
..+|+..| +.+.+-.|+..++..+. ...+++||.+|.|||.+|.++..++
T Consensus 99 pitd~~~P-~~~~iD~fi~~v~~~p~-~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 99 PITDHQAP-DPEDIDAFINFVKSLPK-DTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp EE-TTS----HHHHHHHHHHHHTS-T-T-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred eCCCcCCC-CHHHHHHHHHHHHhCCC-CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34566666 66677777777777744 4889999999999999999886654
No 32
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=97.20 E-value=0.0027 Score=52.25 Aligned_cols=78 Identities=24% Similarity=0.341 Sum_probs=53.0
Q ss_pred cccCCCC-CCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhccc
Q 019528 231 PEWPDHG-VPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIG 309 (339)
Q Consensus 231 ~~Wpd~~-vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~ 309 (339)
..-|+.| .-.+...+..++..+++++.. .|++|||-+|+|||-+...+.. + .... ..|=.++-++||.-+|.
T Consensus 65 I~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~aGISRStA~A~i~a-~--ala~---~~de~ela~~Lra~sp~ 137 (172)
T COG5350 65 IAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYAGISRSTAAALIAA-L--ALAP---DMDETELAERLRALSPY 137 (172)
T ss_pred ccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeeccccccchHHHHHHH-H--hhcc---ccChHHHHHHHHhcCcc
Confidence 3344444 334667777777778778765 8999999999999976543321 1 1222 36667788899999988
Q ss_pred CCCChH
Q 019528 310 MVQTMV 315 (339)
Q Consensus 310 ~Vqt~~ 315 (339)
+-.+.-
T Consensus 138 atPN~R 143 (172)
T COG5350 138 ATPNPR 143 (172)
T ss_pred cCCChh
Confidence 876653
No 33
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.04 E-value=0.0026 Score=53.18 Aligned_cols=80 Identities=21% Similarity=0.327 Sum_probs=48.7
Q ss_pred EEEEEeecccCCCCCCCC-----hHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHH
Q 019528 224 SVLHIQYPEWPDHGVPRD-----TLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLAN 298 (339)
Q Consensus 224 ~v~h~~~~~Wpd~~vP~~-----~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~ 298 (339)
....++|..-|-.+.|.. .+.+.+.++.+... .|.++|||-|||+||+++|.+.. ++.+ ..++.+
T Consensus 57 ~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~---gG~TLvHC~AGVSRSAsLClAYL----mK~~---~msLre 126 (198)
T KOG1718|consen 57 SLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMR---GGKTLVHCVAGVSRSASLCLAYL----MKYH---CMSLRE 126 (198)
T ss_pred cCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhc---CCcEEEEEccccchhHHHHHHHH----HHHc---cchHHH
Confidence 344445555444444532 23445555555443 37899999999999999998754 2322 366666
Q ss_pred HHHHHHHhcccCCCC
Q 019528 299 TVKVFRSQRIGMVQT 313 (339)
Q Consensus 299 ~v~~lR~qR~~~Vqt 313 (339)
+-..+...||-.=.+
T Consensus 127 Ay~~vKa~RpiIRPN 141 (198)
T KOG1718|consen 127 AYHWVKARRPIIRPN 141 (198)
T ss_pred HHHHHHhhCceeCCC
Confidence 666666666544333
No 34
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.96 E-value=0.0066 Score=50.12 Aligned_cols=75 Identities=16% Similarity=0.130 Sum_probs=52.4
Q ss_pred CCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCChHH
Q 019528 237 GVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMVL 316 (339)
Q Consensus 237 ~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~~Q 316 (339)
|.| +.+.+..-++.+.+...-...+-|||-||-|||.|.++...+ ... .......+..+|+.|+...=-..|
T Consensus 88 ~~P-s~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLm----q~~---~wtpe~A~~~vr~iRp~VlL~~~Q 159 (183)
T KOG1719|consen 88 GAP-SLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLM----QHK---NWTPEAAVEHVRKIRPRVLLRPAQ 159 (183)
T ss_pred CCC-CHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhh----hhc---CCCHHHHHHHHHhcCcceeecHHH
Confidence 556 445554444444333322257999999999999999876542 222 477888999999999998888888
Q ss_pred HHH
Q 019528 317 SSF 319 (339)
Q Consensus 317 y~F 319 (339)
..-
T Consensus 160 w~~ 162 (183)
T KOG1719|consen 160 WDV 162 (183)
T ss_pred HHH
Confidence 753
No 35
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.78 E-value=0.012 Score=48.19 Aligned_cols=57 Identities=14% Similarity=0.224 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhccc
Q 019528 241 DTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIG 309 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~ 309 (339)
+...+..|.+.+... .+||++||.+|- |||++.++.... . -++..++++..|..-..
T Consensus 71 ~~~~v~~f~~~~~~~---~~pvL~HC~sG~-Rt~~l~al~~~~----~----g~~~~~i~~~~~~~G~~ 127 (135)
T TIGR01244 71 TPDDVETFRAAIGAA---EGPVLAYCRSGT-RSSLLWGFRQAA----E----GVPVEEIVRRAQAAGYD 127 (135)
T ss_pred CHHHHHHHHHHHHhC---CCCEEEEcCCCh-HHHHHHHHHHHH----c----CCCHHHHHHHHHHcCCC
Confidence 334454554444432 289999999999 999998764321 1 26777888887765543
No 36
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=96.71 E-value=0.0032 Score=53.30 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=23.2
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhccCCeEEEecccccc
Q 019528 133 SQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDN 170 (339)
Q Consensus 133 ~~~I~tQ~Pl~~T~~dFW~MV~e~~v~~IVmL~~~~e~ 170 (339)
..++=+-.|..-|.+|.+.+. +.+++.||=|-...|-
T Consensus 19 g~lyRS~~l~~lt~~d~~~L~-~lgI~tIiDLRs~~E~ 55 (164)
T PF13350_consen 19 GRLYRSGNLSNLTEADLERLR-ELGIRTIIDLRSPTER 55 (164)
T ss_dssp TSEEEES--TT--HHHHHHHH-HTT--EEEE-S-HHHH
T ss_pred CcEEecCCcCcCCHHHHHHHH-hCCCCEEEECCCcccc
Confidence 356667777778999998888 9999999999887763
No 37
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=96.56 E-value=0.0029 Score=61.68 Aligned_cols=85 Identities=22% Similarity=0.221 Sum_probs=54.2
Q ss_pred cccCCCCCCCChHHHHHHHHHHHcCC--CCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhc-
Q 019528 231 PEWPDHGVPRDTLAVREILKRIYNLP--PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQR- 307 (339)
Q Consensus 231 ~~Wpd~~vP~~~~~~~~~~~~~~~~~--~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR- 307 (339)
.+|+|++.| +.+.+..+.+.+.++- ....=++|||-+|-||||+.+++..+...+... -.+.+..+=..|
T Consensus 78 ~~~~Dh~~P-~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~t------a~eald~~~~kR~ 150 (434)
T KOG2283|consen 78 FGFDDHNPP-PLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISAT------AEEALDYFNEKRF 150 (434)
T ss_pred cCCCCCCCC-cHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCC------HHHHHHHHhhhhc
Confidence 399999999 5566666665554331 122568999999999999987766555444321 233444444444
Q ss_pred --c--cCCCChHHHHHHHH
Q 019528 308 --I--GMVQTMVLSSFLVQ 322 (339)
Q Consensus 308 --~--~~Vqt~~Qy~F~y~ 322 (339)
. +-+-.+.|-+|++.
T Consensus 151 ~~~~~~~~~~PSq~RYv~Y 169 (434)
T KOG2283|consen 151 DEGKSKGVTIPSQRRYVGY 169 (434)
T ss_pred cccccCCccCchhhHHHHH
Confidence 3 34667778777754
No 38
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.55 E-value=0.0096 Score=55.21 Aligned_cols=61 Identities=18% Similarity=0.339 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCCh
Q 019528 244 AVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTM 314 (339)
Q Consensus 244 ~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~ 314 (339)
..++++..+.... +-++|||.+|++||.+++.++++.. . ..++.++.+.+++.|+....+.
T Consensus 143 ~~~~fI~~a~~~~---~~vlVHC~~GvSRSat~viAYlM~~----~---~~~l~~A~~~vk~~R~~i~PN~ 203 (285)
T KOG1716|consen 143 EAISFIEKAREKG---GKVLVHCQAGVSRSATLVIAYLMKY----E---GLSLEDAYELVKSRRPIISPNF 203 (285)
T ss_pred HHHHHHHHHHhCC---CeEEEEcCCccchhHHHHHHHHHHH----c---CCCHHHHHHHHHHhCCccCCCH
Confidence 3456666665543 7899999999999999987765322 2 4788899999999998886654
No 39
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.18 E-value=0.015 Score=52.26 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 019528 245 VREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMVLSSFLVQSL 324 (339)
Q Consensus 245 ~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR~~~Vqt~~Qy~F~y~~l 324 (339)
-+.|+...+... .-++|||-+||+||-|.++.+ +|+.+. +++.++..-+.+.+.+.-.+ |-|+.+.
T Consensus 240 AIsfIdeArsk~---cgvLVHClaGISRSvTvtvaY-LMqkl~------lslndAyd~Vk~kksnisPN---FnFMgQL- 305 (343)
T KOG1717|consen 240 AISFIDEARSKN---CGVLVHCLAGISRSVTVTVAY-LMQKLN------LSLNDAYDFVKHKKSNISPN---FNFMGQL- 305 (343)
T ss_pred HHHHHHHhhccC---CcEEEeeeccccchhHHHHHH-HHHHhc------cchhhHHHHHHHhccCCCCC---cchhHHH-
Confidence 345555555443 569999999999999988764 455442 44445555555555555444 3355443
Q ss_pred HHHHHHcc
Q 019528 325 VSFSYSLF 332 (339)
Q Consensus 325 ~~yl~~~~ 332 (339)
++|=.+++
T Consensus 306 ldfertlg 313 (343)
T KOG1717|consen 306 LDFERTLG 313 (343)
T ss_pred HHHHHHhh
Confidence 34444443
No 40
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=95.68 E-value=0.026 Score=44.54 Aligned_cols=37 Identities=24% Similarity=0.534 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHH
Q 019528 241 DTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHN 281 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~ 281 (339)
+.+.+..|.+.+.+.+ +||++||..|. |++++.++.-
T Consensus 71 ~~~~v~~f~~~l~~~~---~Pvl~hC~sG~-Ra~~l~~l~~ 107 (110)
T PF04273_consen 71 TEEDVEAFADALESLP---KPVLAHCRSGT-RASALWALAQ 107 (110)
T ss_dssp -HHHHHHHHHHHHTTT---TSEEEE-SCSH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC---CCEEEECCCCh-hHHHHHHHHh
Confidence 5567777777666653 79999999995 9999988754
No 41
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=94.65 E-value=0.059 Score=48.93 Aligned_cols=23 Identities=39% Similarity=0.849 Sum_probs=20.6
Q ss_pred CCCEEEEcCCCCchHHHHHHHHH
Q 019528 259 FGPIVVHCSAGIGRTGAYCTIHN 281 (339)
Q Consensus 259 ~~PivVHCs~GvGRtG~f~ai~~ 281 (339)
++|+++||.+|.-|||..+|+..
T Consensus 136 ~~PvL~HC~~GkdRTGl~~al~r 158 (249)
T COG2365 136 NGPVLIHCTAGKDRTGLVAALYR 158 (249)
T ss_pred cCCEEEecCCCCcchHHHHHHHH
Confidence 48999999999999999988754
No 42
>PLN02727 NAD kinase
Probab=94.45 E-value=0.1 Score=54.93 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHH
Q 019528 241 DTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNT 282 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~ 282 (339)
+.+.+.+|.+.+.... ..||++||..|.+|||++.|.+..
T Consensus 325 t~EqVe~fa~~l~~sl--pkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 325 SAEQVEKFASLVSDSS--KKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred CHHHHHHHHHHHHhhc--CCCEEEECCCCCchHHHHHHHHHH
Confidence 6677777777763321 279999999999999999997654
No 43
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.64 E-value=0.15 Score=50.79 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=23.3
Q ss_pred CCCCCCEEEEcCCCCchHHHHHHHHHHH
Q 019528 256 PPNFGPIVVHCSAGIGRTGAYCTIHNTV 283 (339)
Q Consensus 256 ~~~~~PivVHCs~GvGRtG~f~ai~~~~ 283 (339)
..+..||+||||||=.||.-+.++..++
T Consensus 371 e~~~~sVlVHCSDGWDRT~QlvsLA~Ll 398 (717)
T KOG4471|consen 371 ESESRSVLVHCSDGWDRTAQLVSLAMLL 398 (717)
T ss_pred hcCCceEEEEcCCCccchHHHHHHHHHH
Confidence 3444899999999999999998887654
No 44
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=90.99 E-value=1.4 Score=39.17 Aligned_cols=55 Identities=22% Similarity=0.434 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Q 019528 242 TLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQ 306 (339)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~q 306 (339)
.+.+...++.+.. ..+.|++|||.-|--|||++++. ++.+. ...+..++.+-+..
T Consensus 133 ~~~i~~~l~~lld--~~N~P~Lihc~rGkhRtg~lVgc---lRklq-----~W~lssil~Ey~~f 187 (249)
T KOG1572|consen 133 DHSIRKALKVLLD--KRNYPILIHCKRGKHRTGCLVGC---LRKLQ-----NWSLSSILDEYLRF 187 (249)
T ss_pred HHHHHHHHHHHhc--ccCCceEEecCCCCcchhhhHHH---HHHHh-----ccchhHHHHHHHHh
Confidence 4455555555332 23479999999999999999884 44443 25555555554443
No 45
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=83.55 E-value=2 Score=41.05 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=19.4
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHH
Q 019528 259 FGPIVVHCSAGIGRTGAYCTIHNT 282 (339)
Q Consensus 259 ~~PivVHCs~GvGRtG~f~ai~~~ 282 (339)
..+|+|||++|-.||..++++..+
T Consensus 231 ~~~Vlvh~~dGwDrt~q~~sL~ql 254 (353)
T PF06602_consen 231 GSSVLVHCSDGWDRTSQLSSLAQL 254 (353)
T ss_dssp --EEEEECTTSSSHHHHHHHHHHH
T ss_pred CceEEEEcCCCCcccHHHHHHHHH
Confidence 378999999999999998876554
No 46
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=76.02 E-value=4.8 Score=40.53 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.0
Q ss_pred CCEEEEcCCCCchHHHHHHHHHH
Q 019528 260 GPIVVHCSAGIGRTGAYCTIHNT 282 (339)
Q Consensus 260 ~PivVHCs~GvGRtG~f~ai~~~ 282 (339)
.+||||||+|--||...+.+..+
T Consensus 345 ~sVlvhcsdGwDrT~qV~SLaQl 367 (573)
T KOG1089|consen 345 ASVLVHCSDGWDRTCQVSSLAQL 367 (573)
T ss_pred CeEEEEccCCcchhHHHHHHHHH
Confidence 79999999999999988876544
No 47
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=74.88 E-value=7 Score=37.71 Aligned_cols=83 Identities=23% Similarity=0.287 Sum_probs=53.4
Q ss_pred ccCCCC-CCCC--hHHHHHHHHHHHc-CCCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhc
Q 019528 232 EWPDHG-VPRD--TLAVREILKRIYN-LPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQR 307 (339)
Q Consensus 232 ~Wpd~~-vP~~--~~~~~~~~~~~~~-~~~~~~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~~~~~dv~~~v~~lR~qR 307 (339)
.=+-++ +|.+ ...+..+++.... ......=|.|||..|..|||-+++...+ .. +...+.++++.+-+.|
T Consensus 93 ~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~----~~---~~~s~~~aik~f~~~r 165 (393)
T KOG2386|consen 93 NCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLA----DV---GGYSSSEAIKRFADAR 165 (393)
T ss_pred ccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeee----ec---cCccHHHHHHHHHHhC
Confidence 344445 6633 4455555554332 2223357999999999999987654321 11 2378889999999999
Q ss_pred ccCCCChHHHHHHH
Q 019528 308 IGMVQTMVLSSFLV 321 (339)
Q Consensus 308 ~~~Vqt~~Qy~F~y 321 (339)
+..+.-.+-+.=+|
T Consensus 166 ~~gi~k~dyi~~L~ 179 (393)
T KOG2386|consen 166 PPGIEKQDYIDALY 179 (393)
T ss_pred CCccCchHHHHHHh
Confidence 98888766554443
No 48
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.10 E-value=12 Score=29.97 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHH
Q 019528 241 DTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAY 276 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f 276 (339)
+...+..|.+.+.+.. +|++.||..|. |+=++
T Consensus 72 T~~dV~~f~~Al~eae---gPVlayCrsGt-Rs~~l 103 (130)
T COG3453 72 TEADVEAFQRALDEAE---GPVLAYCRSGT-RSLNL 103 (130)
T ss_pred CHHHHHHHHHHHHHhC---CCEEeeecCCc-hHHHH
Confidence 4455656655555543 89999998884 55333
No 49
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=55.62 E-value=32 Score=37.11 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=49.5
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHHHHcCC-------CCCCCHHHHHHHHHHhcccCCCChH--HHHHHHHHH
Q 019528 260 GPIVVHCSAGIGRTGAYCTIHNTVQRILVGD-------MSALDLANTVKVFRSQRIGMVQTMV--LSSFLVQSL 324 (339)
Q Consensus 260 ~PivVHCs~GvGRtG~f~ai~~~~~~l~~~~-------~~~~dv~~~v~~lR~qR~~~Vqt~~--Qy~F~y~~l 324 (339)
+-.|-.|.||+.-+|++=|+|.++..-..+. ....+|.-+..-+|+.|...|.+.. ||+-+|-++
T Consensus 852 ~y~VgfCGDGANDCgALKaAdvGISLSeaEASvAApFTSk~~~I~cVp~vIrEGRaALVTSf~~FkYMalYs~i 925 (1140)
T KOG0208|consen 852 GYKVGFCGDGANDCGALKAADVGISLSEAEASVAAPFTSKTPSISCVPDVIREGRAALVTSFACFKYMALYSAI 925 (1140)
T ss_pred CcEEEecCCCcchhhhhhhcccCcchhhhhHhhcCccccCCCchhhHhHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 6789999999999999999999876444321 1246788888889999999999865 555555443
No 50
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=49.37 E-value=24 Score=22.31 Aligned_cols=24 Identities=17% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEeecccCCCCCCCChHHHHHHHH
Q 019528 227 HIQYPEWPDHGVPRDTLAVREILK 250 (339)
Q Consensus 227 h~~~~~Wpd~~vP~~~~~~~~~~~ 250 (339)
+|++.+||--|+|.-.+++++-+.
T Consensus 2 ~~~~AG~~~~G~~ql~ESLLdrIt 25 (45)
T PF02061_consen 2 QYAIAGWPRMGCPQLSESLLDRIT 25 (45)
T ss_pred eeeecCccccCCchhhHHHHHHHH
Confidence 578999999999977778777653
No 51
>PLN02160 thiosulfate sulfurtransferase
Probab=48.93 E-value=30 Score=28.07 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.2
Q ss_pred CCEEEEcCCCCchHHHH
Q 019528 260 GPIVVHCSAGIGRTGAY 276 (339)
Q Consensus 260 ~PivVHCs~GvGRtG~f 276 (339)
.||+|+|..| +||..-
T Consensus 82 ~~IivyC~sG-~RS~~A 97 (136)
T PLN02160 82 DDILVGCQSG-ARSLKA 97 (136)
T ss_pred CcEEEECCCc-HHHHHH
Confidence 7999999988 687754
No 52
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=45.39 E-value=21 Score=26.81 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=13.6
Q ss_pred CCEEEEcCCCCchHHHHH
Q 019528 260 GPIVVHCSAGIGRTGAYC 277 (339)
Q Consensus 260 ~PivVHCs~GvGRtG~f~ 277 (339)
.||||+|..| +||...+
T Consensus 62 ~~ivvyC~~G-~rs~~a~ 78 (101)
T cd01518 62 KKVLMYCTGG-IRCEKAS 78 (101)
T ss_pred CEEEEECCCc-hhHHHHH
Confidence 7999999887 6887543
No 53
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=44.95 E-value=32 Score=25.72 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=12.7
Q ss_pred CCEEEEcCCCCchHHHH
Q 019528 260 GPIVVHCSAGIGRTGAY 276 (339)
Q Consensus 260 ~PivVHCs~GvGRtG~f 276 (339)
.||+|+|..| +||...
T Consensus 62 ~~ivv~C~~G-~rs~~a 77 (100)
T cd01523 62 QEVTVICAKE-GSSQFV 77 (100)
T ss_pred CeEEEEcCCC-CcHHHH
Confidence 7999999988 477543
No 54
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=39.10 E-value=32 Score=31.52 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=23.5
Q ss_pred EeecccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHH
Q 019528 228 IQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGA 275 (339)
Q Consensus 228 ~~~~~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~ 275 (339)
+.+..+.+.+...+...+..++... ....+ .|||++|..|.--+.+
T Consensus 202 i~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~-~~ii~yC~~G~~A~~~ 247 (281)
T PRK11493 202 VPWTELVREGELKTTDELDAIFFGR-GVSFD-RPIIASCGSGVTAAVV 247 (281)
T ss_pred CCHHHhcCCCCcCCHHHHHHHHHhc-CCCCC-CCEEEECCcHHHHHHH
Confidence 3344443333333445555554432 12222 6999999888643333
No 55
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=37.70 E-value=61 Score=24.67 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=11.9
Q ss_pred CCEEEEcCCCCchHHH
Q 019528 260 GPIVVHCSAGIGRTGA 275 (339)
Q Consensus 260 ~PivVHCs~GvGRtG~ 275 (339)
.||+|+|..|. |+..
T Consensus 67 ~~ivv~C~~G~-rs~~ 81 (109)
T cd01533 67 TPIVVNCAGRT-RSII 81 (109)
T ss_pred CeEEEECCCCc-hHHH
Confidence 69999999885 6643
No 56
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=36.70 E-value=34 Score=25.79 Aligned_cols=17 Identities=47% Similarity=0.700 Sum_probs=13.2
Q ss_pred CCCEEEEcCCCCchHHHH
Q 019528 259 FGPIVVHCSAGIGRTGAY 276 (339)
Q Consensus 259 ~~PivVHCs~GvGRtG~f 276 (339)
..|++|+|..| .||+.-
T Consensus 61 ~~~ivv~C~~G-~rS~~a 77 (110)
T COG0607 61 DDPIVVYCASG-VRSAAA 77 (110)
T ss_pred CCeEEEEeCCC-CChHHH
Confidence 37999999999 476543
No 57
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=36.09 E-value=1.1e+02 Score=23.68 Aligned_cols=42 Identities=19% Similarity=0.397 Sum_probs=27.1
Q ss_pred eeeEEEEEEeeeecccEEEEEeEeecccCCCCceEEEEEeeccc
Q 019528 190 GNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233 (339)
Q Consensus 190 g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~~~~W 233 (339)
+++.+++.-.-..+..+.++.|+|++.+.. .|.+..+-|..|
T Consensus 48 ~gi~~~~~v~V~~~~~vEi~~l~l~N~~~~--~r~L~vtsy~E~ 89 (110)
T PF06165_consen 48 GGIETELTVFVPPDDPVEIRRLRLTNTSNR--PRRLSVTSYAEW 89 (110)
T ss_dssp TTEEEEEEEE--TTSSEEEEEEEEEE-SSS---EEEEEEEEEEE
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEEEECcCC--cEEEEEEEEEEE
Confidence 444444443333356789999999987554 478888888888
No 58
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=35.39 E-value=90 Score=24.16 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchHHHH
Q 019528 241 DTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAY 276 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~f 276 (339)
+...+.+++.... .. ...||+|+|..| |+....
T Consensus 63 ~~~~~~~~~~~~~-~~-~~~~vv~~c~~g-~~~a~~ 95 (122)
T cd01448 63 SPEEFAELLGSLG-IS-NDDTVVVYDDGG-GFFAAR 95 (122)
T ss_pred CHHHHHHHHHHcC-CC-CCCEEEEECCCC-CccHHH
Confidence 4566666655432 22 237999999998 444433
No 59
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=31.37 E-value=74 Score=25.60 Aligned_cols=32 Identities=38% Similarity=0.574 Sum_probs=15.5
Q ss_pred CCCChHHHHHHHHHHHcCC-CCCCCEEEEcCCCCc
Q 019528 238 VPRDTLAVREILKRIYNLP-PNFGPIVVHCSAGIG 271 (339)
Q Consensus 238 vP~~~~~~~~~~~~~~~~~-~~~~PivVHCs~GvG 271 (339)
+|++ .+-++.+.+.... ...+.+|||||...+
T Consensus 76 vpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 76 VPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--
T ss_pred echH--HHHHHHHHHHHhccCCCCcEEEECCCCCh
Confidence 4544 4556666665541 123789999995543
No 60
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=29.29 E-value=55 Score=29.47 Aligned_cols=17 Identities=47% Similarity=0.835 Sum_probs=11.6
Q ss_pred CCCEEEEcCCCCchHHHH
Q 019528 259 FGPIVVHCSAGIGRTGAY 276 (339)
Q Consensus 259 ~~PivVHCs~GvGRtG~f 276 (339)
.+-||+||| |.+-+|.|
T Consensus 91 pg~iv~HcS-ga~~~~il 107 (289)
T COG5495 91 PGTIVAHCS-GANGSGIL 107 (289)
T ss_pred CCeEEEEcc-CCCchhhh
Confidence 378999999 44445543
No 61
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=28.43 E-value=1.1e+02 Score=25.50 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCchHHHH
Q 019528 259 FGPIVVHCSAGIGRTGAY 276 (339)
Q Consensus 259 ~~PivVHCs~GvGRtG~f 276 (339)
..||||.|..|..|+...
T Consensus 116 d~~IVvYC~~G~~~S~~a 133 (162)
T TIGR03865 116 DRPLVFYCLADCWMSWNA 133 (162)
T ss_pred CCEEEEEECCCCHHHHHH
Confidence 379999999988787753
No 62
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=26.34 E-value=98 Score=30.58 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=29.7
Q ss_pred HHHHHHHcCCCCCCCEEEEc---CCCCchHHHHHHHHHHHHHH
Q 019528 247 EILKRIYNLPPNFGPIVVHC---SAGIGRTGAYCTIHNTVQRI 286 (339)
Q Consensus 247 ~~~~~~~~~~~~~~PivVHC---s~GvGRtG~f~ai~~~~~~l 286 (339)
+.+++.+.......-+|||- ++|+|+..+-.|++++.++-
T Consensus 232 ~al~~~ntaaariarvvvhpdyr~dglg~~sv~~a~ewI~eRr 274 (593)
T COG2401 232 EALRECNTAAARIARVVVHPDYRADGLGQLSVIAALEWIIERR 274 (593)
T ss_pred HHHHHhhhhhhheeEEEeccccccCccchhHHHHHHHHHHHhh
Confidence 44444444444456799996 79999999999999988764
No 63
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=26.02 E-value=1.6e+02 Score=20.97 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=25.4
Q ss_pred CCCCCChhHHhHHHHHHHHHHHHhhcchHHHHH
Q 019528 27 PRISLTADQYNHCSEALSFFKEKLQNKSREISQ 59 (339)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 59 (339)
++....|++++..++.|+.++++....+..+.|
T Consensus 8 P~v~v~~~dfne~~kRLdeieekvef~~~Ev~Q 40 (75)
T COG4064 8 PKVVVDPDDFNEIHKRLDEIEEKVEFVNGEVYQ 40 (75)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 455678899999999999999998865444433
No 64
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.67 E-value=11 Score=37.62 Aligned_cols=29 Identities=31% Similarity=0.545 Sum_probs=25.1
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhccCCeE
Q 019528 133 SQFIATQGPLPHTYEDFWEMVIQYHCPVI 161 (339)
Q Consensus 133 ~~~I~tQ~Pl~~T~~dFW~MV~e~~v~~I 161 (339)
++||++|||..+.+.-=|.-||--|-.+|
T Consensus 475 kqfIl~QG~Sk~v~~meWdkiWAfNKKvI 503 (712)
T KOG1147|consen 475 KQFILAQGPSKNVVTMEWDKIWAFNKKVI 503 (712)
T ss_pred HHHHHHhCCccceeeeehHhhhhhccccc
Confidence 68999999999999999999998875433
No 65
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=25.48 E-value=81 Score=25.65 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=18.2
Q ss_pred HHHHHHHcCCC-CCCCEEEEcCCCCchHHH
Q 019528 247 EILKRIYNLPP-NFGPIVVHCSAGIGRTGA 275 (339)
Q Consensus 247 ~~~~~~~~~~~-~~~PivVHCs~GvGRtG~ 275 (339)
+|++.+....+ ....||++|..|. |+..
T Consensus 76 eF~kqvg~~kp~~d~eiIf~C~SG~-Rs~~ 104 (136)
T KOG1530|consen 76 EFLKQVGSSKPPHDKEIIFGCASGV-RSLK 104 (136)
T ss_pred HHHHHhcccCCCCCCcEEEEeccCc-chhH
Confidence 55565554433 3358999999994 6654
No 66
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=23.48 E-value=82 Score=25.21 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEcCCCCchHHH
Q 019528 244 AVREILKRIYNLPPNFGPIVVHCSAGIGRTGA 275 (339)
Q Consensus 244 ~~~~~~~~~~~~~~~~~PivVHCs~GvGRtG~ 275 (339)
.+.++.+.+.+......||+|..-.|.|++-+
T Consensus 6 ~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 6 AMRRLRRQLERLAKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HHHHHHHHHHHHHCSSS-EEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHH
Confidence 34445444444434448999999999999864
No 67
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=22.98 E-value=1.5e+02 Score=22.06 Aligned_cols=16 Identities=31% Similarity=0.602 Sum_probs=12.0
Q ss_pred CCCEEEEcCCCCchHHH
Q 019528 259 FGPIVVHCSAGIGRTGA 275 (339)
Q Consensus 259 ~~PivVHCs~GvGRtG~ 275 (339)
..||||+|..|. |+..
T Consensus 66 ~~~ivv~c~~g~-~s~~ 81 (106)
T cd01519 66 DKELIFYCKAGV-RSKA 81 (106)
T ss_pred CCeEEEECCCcH-HHHH
Confidence 379999999874 5543
No 68
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=22.09 E-value=3e+02 Score=25.16 Aligned_cols=85 Identities=14% Similarity=0.105 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCC--CCchHHHHHHHHHHHHHHHc------CCCCCCCHHHHHHHHHHhcccCCC
Q 019528 241 DTLAVREILKRIYNLPPNFGPIVVHCSA--GIGRTGAYCTIHNTVQRILV------GDMSALDLANTVKVFRSQRIGMVQ 312 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~--GvGRtG~f~ai~~~~~~l~~------~~~~~~dv~~~v~~lR~qR~~~Vq 312 (339)
.+..+.++++.+++.-+ .|+-+||.+ |.+-+-++.|++...+.+.. +..|..++.+++..|+..-...=-
T Consensus 176 ~P~~v~~lv~~l~~~~~--~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~g~~~~~ 253 (275)
T cd07937 176 TPYAAYELVKALKKEVG--LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGTGRDTGL 253 (275)
T ss_pred CHHHHHHHHHHHHHhCC--CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHccCCCCCC
Confidence 45666677766665432 689999865 55555566666655444321 234568899999888865111111
Q ss_pred ChHHHHHHHHHHHHH
Q 019528 313 TMVLSSFLVQSLVSF 327 (339)
Q Consensus 313 t~~Qy~F~y~~l~~y 327 (339)
+.++..-+.+.+...
T Consensus 254 dl~~l~~~~~~v~~~ 268 (275)
T cd07937 254 DLEKLEEISEYFEEV 268 (275)
T ss_pred CHHHHHHHHHHHHHH
Confidence 345555544444443
No 69
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=22.06 E-value=1.9e+02 Score=22.82 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCCchHHHHH
Q 019528 259 FGPIVVHCSAGIGRTGAYC 277 (339)
Q Consensus 259 ~~PivVHCs~GvGRtG~f~ 277 (339)
..||||.|..|..||...+
T Consensus 86 ~~~vvvyC~~~G~rs~~a~ 104 (128)
T cd01520 86 DPKLLIYCARGGMRSQSLA 104 (128)
T ss_pred CCeEEEEeCCCCccHHHHH
Confidence 3799999976556777554
No 70
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=21.69 E-value=1.6e+02 Score=26.87 Aligned_cols=88 Identities=8% Similarity=-0.021 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCCC--CchHHHHHHHHHHHHHHHc------CCCCCCCHHHHHHHHHHhcccCCC
Q 019528 241 DTLAVREILKRIYNLPPNFGPIVVHCSAG--IGRTGAYCTIHNTVQRILV------GDMSALDLANTVKVFRSQRIGMVQ 312 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~G--vGRtG~f~ai~~~~~~l~~------~~~~~~dv~~~v~~lR~qR~~~Vq 312 (339)
.|..+.++++.+++.-+..-|+-+||.+- .+-+-++.|+......+.. +..|..++.+++..|+... .
T Consensus 165 ~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~~~~----~ 240 (266)
T cd07944 165 YPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTELLLDYLNNKF----G 240 (266)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHHHHHHHHHhh----c
Confidence 55667777777665432225899998764 4444455555554433321 1235677888888887662 2
Q ss_pred ChHHHHHHHHHHHHHHHHcc
Q 019528 313 TMVLSSFLVQSLVSFSYSLF 332 (339)
Q Consensus 313 t~~Qy~F~y~~l~~yl~~~~ 332 (339)
+.-.+.=+..+.-+|+....
T Consensus 241 ~~~dl~~l~~~~~~~~~~~~ 260 (266)
T cd07944 241 KKYNLEPVLELIDEYIAPLK 260 (266)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 22233334444445555443
No 71
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=21.68 E-value=1.1e+02 Score=27.38 Aligned_cols=65 Identities=14% Similarity=0.232 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCC--CCchHHHHHHHHHHHHHHHc------CCCCCCCHHHHHHHHHHh
Q 019528 241 DTLAVREILKRIYNLPPNFGPIVVHCSA--GIGRTGAYCTIHNTVQRILV------GDMSALDLANTVKVFRSQ 306 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~--GvGRtG~f~ai~~~~~~l~~------~~~~~~dv~~~v~~lR~q 306 (339)
++..+.++++.+++..++ -|+-+||.+ |.|-+-++.|+....+.+.. +..|..++.+++..|+..
T Consensus 173 ~P~~v~~li~~l~~~~~~-~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~ 245 (265)
T cd03174 173 TPEEVAELVKALREALPD-VPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALEGL 245 (265)
T ss_pred CHHHHHHHHHHHHHhCCC-CeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHHhc
Confidence 566777777777665444 688888865 66666677777666554432 233568888888888775
No 72
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=21.04 E-value=1.2e+02 Score=21.97 Aligned_cols=14 Identities=43% Similarity=0.800 Sum_probs=11.3
Q ss_pred EEEEcCCCCchHHH
Q 019528 262 IVVHCSAGIGRTGA 275 (339)
Q Consensus 262 ivVHCs~GvGRtG~ 275 (339)
|++-|.+|+|-|-.
T Consensus 2 IlvvC~~Gi~TS~~ 15 (90)
T PF02302_consen 2 ILVVCGSGIGTSLM 15 (90)
T ss_dssp EEEEESSSSHHHHH
T ss_pred EEEECCChHHHHHH
Confidence 78999999986643
No 73
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=21.02 E-value=96 Score=24.22 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=12.6
Q ss_pred CCEEEEcCCCCchHHHH
Q 019528 260 GPIVVHCSAGIGRTGAY 276 (339)
Q Consensus 260 ~PivVHCs~GvGRtG~f 276 (339)
.||+|+|..|. |+...
T Consensus 73 ~~ivv~C~~G~-rs~~a 88 (122)
T cd01526 73 SPIYVVCRRGN-DSQTA 88 (122)
T ss_pred CcEEEECCCCC-cHHHH
Confidence 79999999884 77643
No 74
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=21.00 E-value=1.6e+02 Score=22.83 Aligned_cols=16 Identities=31% Similarity=0.681 Sum_probs=12.2
Q ss_pred CCEEEEcCCCCchHHHH
Q 019528 260 GPIVVHCSAGIGRTGAY 276 (339)
Q Consensus 260 ~PivVHCs~GvGRtG~f 276 (339)
.||+|+|..| .|+...
T Consensus 65 ~~ivv~C~~G-~rs~~a 80 (117)
T cd01522 65 RPVLLLCRSG-NRSIAA 80 (117)
T ss_pred CeEEEEcCCC-ccHHHH
Confidence 7899999888 466543
No 75
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=20.81 E-value=1.1e+02 Score=22.58 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=12.3
Q ss_pred CCCEEEEcCCCCchHHHH
Q 019528 259 FGPIVVHCSAGIGRTGAY 276 (339)
Q Consensus 259 ~~PivVHCs~GvGRtG~f 276 (339)
..||+|+|..| +|+...
T Consensus 56 ~~~ivv~c~~g-~~s~~~ 72 (96)
T cd01529 56 ATRYVLTCDGS-LLARFA 72 (96)
T ss_pred CCCEEEEeCCh-HHHHHH
Confidence 37999999866 566543
No 76
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=20.55 E-value=2.2e+02 Score=20.62 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=11.5
Q ss_pred CCCEEEEcCCCCchHHH
Q 019528 259 FGPIVVHCSAGIGRTGA 275 (339)
Q Consensus 259 ~~PivVHCs~GvGRtG~ 275 (339)
..||+|+|..| .|+..
T Consensus 56 ~~~ivv~c~~g-~~s~~ 71 (96)
T cd01444 56 DRPVVVYCYHG-NSSAQ 71 (96)
T ss_pred CCCEEEEeCCC-ChHHH
Confidence 37999999966 45443
No 77
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=20.12 E-value=2.7e+02 Score=25.94 Aligned_cols=44 Identities=36% Similarity=0.647 Sum_probs=35.7
Q ss_pred EEEEEeecccCCCCCCC-ChHHHHHHHHHHHcCCCCCCCEEEEcCCCCch
Q 019528 224 SVLHIQYPEWPDHGVPR-DTLAVREILKRIYNLPPNFGPIVVHCSAGIGR 272 (339)
Q Consensus 224 ~v~h~~~~~Wpd~~vP~-~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGR 272 (339)
.+-|+|.. |+.|-|. +++.+.+++..+++.. +.+++.-++|.|-
T Consensus 44 ai~HlHvR--p~dG~pt~d~~~yr~~l~rIr~~~---~D~vin~ttg~g~ 88 (298)
T COG3246 44 AILHLHVR--PEDGRPTLDPEAYREVLERIRAAV---GDAVINLTTGEGG 88 (298)
T ss_pred ceEEEEec--CCCCCcccCHHHHHHHHHHHHccC---CCeEEEecccccc
Confidence 78899997 9999984 5677889999998765 5688888888763
Done!