BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>019529
MAMRPRYTIGNQPRQLMRRTYENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDN
ITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGVLTIIMPKIKNNAQKDA
KADATHHETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQKTASLVD
DITKQIDESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYKIAN
EEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKKHESAFA
SEGLIEGKQQLLVNMGTAVLVIVGLGAYLSYTITSFGKV

High Scoring Gene Products

Symbol, full name Information P value
RTM2
AT5G04890
protein from Arabidopsis thaliana 1.9e-21
AT3G10680 protein from Arabidopsis thaliana 2.8e-17
AT2G27140 protein from Arabidopsis thaliana 1.9e-13
AT5G20970 protein from Arabidopsis thaliana 2.7e-13
AT4G21870 protein from Arabidopsis thaliana 9.7e-06
AT1G54400 protein from Arabidopsis thaliana 0.00034
AT1G07400 protein from Arabidopsis thaliana 0.00075

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  019529
        (339 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2175438 - symbol:RTM2 "AT5G04890" species:3702...   251  1.9e-21   1
TAIR|locus:2075805 - symbol:AT3G10680 "AT3G10680" species...   194  2.8e-17   3
TAIR|locus:2045144 - symbol:AT2G27140 "AT2G27140" species...   178  1.9e-13   1
TAIR|locus:2147137 - symbol:AT5G20970 "AT5G20970" species...   175  2.7e-13   2
TAIR|locus:2141632 - symbol:AT4G21870 species:3702 "Arabi...   109  9.7e-06   1
TAIR|locus:2020033 - symbol:AT1G54400 "AT1G54400" species...   109  0.00034   1
TAIR|locus:2024997 - symbol:AT1G07400 species:3702 "Arabi...   103  0.00075   1


>TAIR|locus:2175438 [details] [associations]
            symbol:RTM2 "AT5G04890" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009408
            "response to heat" evidence=IEP;RCA] [GO:0009644 "response to high
            light intensity" evidence=RCA] [GO:0042542 "response to hydrogen
            peroxide" evidence=RCA] [GO:0009615 "response to virus"
            evidence=IMP] Pfam:PF00011 InterPro:IPR002068 EMBL:CP002688
            GO:GO:0006950 GO:GO:0009615 InterPro:IPR008978 SUPFAM:SSF49764
            PROSITE:PS01031 EMBL:AB008271 EMBL:AF208051 EMBL:GU396190
            EMBL:GU396196 EMBL:GU396199 EMBL:GU396202 EMBL:GU396206
            EMBL:FR682046 EMBL:FR682048 EMBL:FR682050 EMBL:FR682053
            EMBL:FR682054 EMBL:FR682057 EMBL:FR682059 EMBL:FR682063
            EMBL:FR682064 EMBL:FR682068 EMBL:FR682073 EMBL:FR682075
            IPI:IPI00518346 RefSeq:NP_568144.1 UniGene:At.7398
            ProteinModelPortal:Q9M670 SMR:Q9M670 STRING:Q9M670 PRIDE:Q9M670
            EnsemblPlants:AT5G04890.1 GeneID:830370 KEGG:ath:AT5G04890
            TAIR:At5g04890 InParanoid:Q9M670 OMA:KSDKVGE
            ProtClustDB:CLSN2717308 Genevestigator:Q9M670 Uniprot:Q9M670
        Length = 366

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 66/237 (27%), Positives = 117/237 (49%)

Query:    21 YENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQ 80
             YE+F PKSEWK + +A+IL + L GF KEQ+KV  TYV +  + ++V G RPLA  +W++
Sbjct:    16 YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKV--TYVHSSKM-IRVTGERPLANRKWSR 72

Query:    81 FSELYKIPETCDINNINSVFQGGVLTIIMPXXXXXXXXXXXXXXTHHETS--SSQEIAET 138
             F+E++ +P+ C ++ I+  F+  VLTI MP                   +   + ++ E 
Sbjct:    73 FNEVFTVPQNCLVDKIHGSFKNNVLTITMPKETITKVAYLPETSRTEAAALEKAAKLEEK 132

Query:   139 STVQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQKTASLVDDIT-KQIDESGGETACQK 197
               ++E +R+EK   EA   +K     +E+     Q+ A   ++   +++ E         
Sbjct:   133 RLLEESRRKEKEEEEAKQMKKQLLEEKEALIRKLQEEAKAKEEAEMRKLQEEAKAKEEAA 192

Query:   198 ADEMGHAVEASPKAAALVDTAAKIHD-EIKRVGTDGESAYKIANEEKEKSEAIGKEK 253
             A ++   +EA  K         ++ + +++ +    E+  K   E K   E+  KEK
Sbjct:   193 AKKLQEEIEAKEKLEERKLEERRLEERKLEDMKLAEEAKLKKIQERKSVDESGEKEK 249


>TAIR|locus:2075805 [details] [associations]
            symbol:AT3G10680 "AT3G10680" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009408 "response to heat" evidence=RCA]
            [GO:0009644 "response to high light intensity" evidence=RCA]
            [GO:0042542 "response to hydrogen peroxide" evidence=RCA]
            Pfam:PF00011 InterPro:IPR002068 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0006950 EMBL:AC011560 EMBL:AC011708
            InterPro:IPR008978 SUPFAM:SSF49764 PROSITE:PS01031 IPI:IPI00548310
            RefSeq:NP_187679.1 UniGene:At.53253 ProteinModelPortal:Q9S732
            SMR:Q9S732 PRIDE:Q9S732 EnsemblPlants:AT3G10680.1 GeneID:820237
            KEGG:ath:AT3G10680 TAIR:At3g10680 eggNOG:NOG252957
            HOGENOM:HOG000153437 OMA:KKDERTR PhylomeDB:Q9S732
            ProtClustDB:CLSN2913373 Genevestigator:Q9S732 Uniprot:Q9S732
        Length = 490

 Score = 194 (73.4 bits), Expect = 2.8e-17, Sum P(3) = 2.8e-17
 Identities = 39/107 (36%), Positives = 65/107 (60%)

Query:     4 RPRYTIGNQPRQLMRRTYENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITL 63
             RPR   G  P  L   T  +FKP+++W +   +  L V LPGF ++QI++     D  T 
Sbjct:     7 RPRPGGGRHPPPLAP-TVSSFKPRAQWTNSGSSIFLYVNLPGFYRDQIEIKK---DERTR 62

Query:    64 SLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGVLTIIMP 110
             +++++G+RPL+     +FSE Y++P+TCD+  +++ F  G+LTI  P
Sbjct:    63 TVQIQGQRPLSAQTKARFSEAYRVPDTCDMTKLSTSFSHGLLTIEFP 109

 Score = 64 (27.6 bits), Expect = 2.8e-17, Sum P(3) = 2.8e-17
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query:   288 EKPKDKKHESAFASEGLIEGKQQL----LVNMGTAVLVIVGLGAYLSYTITSF 336
             +K  D     A    G+ E + +     LVN+G A LVI+G GAY+   +  +
Sbjct:   436 QKKSDMDPPLAVGGRGMGEEESRTYDIPLVNVGVAALVIMGFGAYVFVPLVKY 488

 Score = 44 (20.5 bits), Expect = 2.8e-17, Sum P(3) = 2.8e-17
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query:   220 KIHDEIKRVGTDGESAYKIANEEKEKS 246
             K  +E K+VGT  E      NEE  K+
Sbjct:   150 KALEEEKQVGTSQEKTTPTLNEEAPKT 176


>TAIR|locus:2045144 [details] [associations]
            symbol:AT2G27140 "AT2G27140" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009408 "response to heat"
            evidence=ISS;RCA] [GO:0016020 "membrane" evidence=IDA] [GO:0009644
            "response to high light intensity" evidence=RCA] [GO:0042542
            "response to hydrogen peroxide" evidence=RCA] Pfam:PF00011
            InterPro:IPR002068 EMBL:CP002685 GO:GO:0006950 GO:GO:0016020
            InterPro:IPR008978 SUPFAM:SSF49764 PROSITE:PS01031 EMBL:AC005623
            EMBL:AC007154 EMBL:BT024773 IPI:IPI00522217 PIR:C84669
            RefSeq:NP_565638.1 UniGene:At.26848 ProteinModelPortal:Q9ZVC6
            SMR:Q9ZVC6 PRIDE:Q9ZVC6 EnsemblPlants:AT2G27140.1 GeneID:817256
            KEGG:ath:AT2G27140 TAIR:At2g27140 InParanoid:Q9ZVC6 OMA:DHANANR
            PhylomeDB:Q9ZVC6 ProtClustDB:CLSN2917152 ArrayExpress:Q9ZVC6
            Genevestigator:Q9ZVC6 Uniprot:Q9ZVC6
        Length = 224

 Score = 178 (67.7 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 35/92 (38%), Positives = 53/92 (57%)

Query:    19 RTYENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRW 78
             R Y+ F+P S WK E     L +YLPGF KEQ+KV  T     T  L+V G RP    +W
Sbjct:    12 RIYDEFEPLSNWKTEQGFEALTIYLPGFRKEQLKVQVT----TTRKLRVMGDRPAGANKW 67

Query:    79 NQFSELYKIPETCDINNINSVFQGGVLTIIMP 110
              +F + + IP   D++++++ F+G  L + +P
Sbjct:    68 IRFRKEFPIPPNIDVDSVSAKFEGANLVVRLP 99


>TAIR|locus:2147137 [details] [associations]
            symbol:AT5G20970 "AT5G20970" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0009408 "response to heat"
            evidence=ISS] Pfam:PF00011 InterPro:IPR002068 EMBL:CP002688
            GO:GO:0006950 InterPro:IPR008978 SUPFAM:SSF49764 PROSITE:PS01031
            KO:K13993 IPI:IPI00532299 RefSeq:NP_197597.1 UniGene:At.31122
            UniGene:At.31123 ProteinModelPortal:F4K6X6 SMR:F4K6X6 PRIDE:F4K6X6
            EnsemblPlants:AT5G20970.1 GeneID:832222 KEGG:ath:AT5G20970
            OMA:DAQQLKH PhylomeDB:F4K6X6 Uniprot:F4K6X6
        Length = 249

 Score = 175 (66.7 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
 Identities = 35/94 (37%), Positives = 55/94 (58%)

Query:    17 MRRTYENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGG 76
             + R Y+ F+P + W  E DA +L+  LPGF KEQ+KV  T     T  L++ G RP  G 
Sbjct:     6 IERVYQEFEPATRWTSEPDAEVLVADLPGFKKEQLKVSVT----ATRKLRLTGERPTGGN 61

Query:    77 RWNQFSELYKIPETCDINNINSVFQGGVLTIIMP 110
             +W +F +   +P T DI++++++F+   L I  P
Sbjct:    62 KWIRFHQEIPVPLTVDIDSVSAMFKDNKLYIRHP 95

 Score = 37 (18.1 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query:   306 EGKQQLLVNMGTAVLVIVGLGAYLSYTITS 335
             + K+QLL N+  +V +++ +  Y    + S
Sbjct:   212 KNKRQLLCNLAASVSLVLLILLYARNAVRS 241


>TAIR|locus:2141632 [details] [associations]
            symbol:AT4G21870 species:3702 "Arabidopsis thaliana"
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0009408 "response to
            heat" evidence=ISS;RCA] [GO:0009644 "response to high light
            intensity" evidence=RCA] [GO:0042542 "response to hydrogen
            peroxide" evidence=RCA] Pfam:PF00011 InterPro:IPR002068
            GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006950
            HOGENOM:HOG000251751 InterPro:IPR008978 SUPFAM:SSF49764
            PROSITE:PS01031 EMBL:AL161556 EMBL:AL021890 EMBL:BT025602
            EMBL:AY086272 EMBL:AK117785 IPI:IPI00527391 PIR:T05469
            RefSeq:NP_193918.1 UniGene:At.32592 ProteinModelPortal:O49710
            SMR:O49710 EnsemblPlants:AT4G21870.1 GeneID:828276
            KEGG:ath:AT4G21870 TAIR:At4g21870 eggNOG:NOG140091
            InParanoid:O49710 KO:K13993 OMA:IIRTEAT PhylomeDB:O49710
            ProtClustDB:CLSN2685603 Uniprot:O49710
        Length = 134

 Score = 109 (43.4 bits), Expect = 9.7e-06, P = 9.7e-06
 Identities = 29/98 (29%), Positives = 51/98 (52%)

Query:    16 LMRRTYENFKPKS-EWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA 74
             L  ++  N++     W    D+    V LPG  KE+IKV     D+I L ++ E   P++
Sbjct:    15 LASQSLNNYQENHVRWSQSPDSHTFSVDLPGLRKEEIKV--EIEDSIYLIIRTEAT-PMS 71

Query:    75 --GGRWNQFSELYKIPETCDINNINSVFQGGVLTIIMP 110
                     F   +++PE+ D+  I++ ++ GVLT+I+P
Sbjct:    72 PPDQPLKTFKRKFRLPESIDMIGISAGYEDGVLTVIVP 109


>TAIR|locus:2020033 [details] [associations]
            symbol:AT1G54400 "AT1G54400" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0009408 "response to heat"
            evidence=ISS] Pfam:PF00011 InterPro:IPR002068 EMBL:CP002684
            GO:GO:0006950 InterPro:IPR008978 SUPFAM:SSF49764 IPI:IPI00522430
            RefSeq:NP_175842.4 UniGene:At.66025 ProteinModelPortal:F4HWW7
            SMR:F4HWW7 DNASU:841882 EnsemblPlants:AT1G54400.1 GeneID:841882
            KEGG:ath:AT1G54400 OMA:IDILELH Uniprot:F4HWW7
        Length = 183

 Score = 109 (43.4 bits), Expect = 0.00034, P = 0.00034
 Identities = 27/91 (29%), Positives = 47/91 (51%)

Query:    21 YENFKPKSEWKHEDDASILLVYLP-GFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWN 79
             Y+  +P   W+  +D  IL ++LP G  KE +K+    ++N  + L + G  P+   +  
Sbjct:    13 YDEIEPFCRWRRTEDIDILELHLPSGLKKEHLKIQ---INNSGV-LTITGGCPVDQTKTI 68

Query:    80 QFSELYKIPETCDINNINSVFQGGVLTIIMP 110
             +F +  K+ + C  N I + F  GVL + MP
Sbjct:    69 RFMKETKVAKDCKRNEIRAKFSKGVLYVTMP 99


>TAIR|locus:2024997 [details] [associations]
            symbol:AT1G07400 species:3702 "Arabidopsis thaliana"
            [GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0009408 "response to
            heat" evidence=ISS] [GO:0006979 "response to oxidative stress"
            evidence=IEP] Pfam:PF00011 InterPro:IPR002068 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006979
            eggNOG:COG0071 HOGENOM:HOG000251751 InterPro:IPR008978
            SUPFAM:SSF49764 PROSITE:PS01031 EMBL:AC022464 KO:K13993
            EMBL:AK118848 EMBL:BT005424 EMBL:AY086856 IPI:IPI00539044
            RefSeq:NP_172220.1 UniGene:At.42302 ProteinModelPortal:Q9LNW0
            SMR:Q9LNW0 IntAct:Q9LNW0 STRING:Q9LNW0 PaxDb:Q9LNW0
            EnsemblPlants:AT1G07400.1 GeneID:837252 KEGG:ath:AT1G07400
            TAIR:At1g07400 InParanoid:Q9LNW0 OMA:GSWIPAV PhylomeDB:Q9LNW0
            ProtClustDB:CLSN2679711 Uniprot:Q9LNW0
        Length = 157

 Score = 103 (41.3 bits), Expect = 0.00075, P = 0.00075
 Identities = 30/109 (27%), Positives = 50/109 (45%)

Query:    13 PRQLMRRTYENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRP 72
             P  L   T      + +WK   +A +    LPG  KE++KV     D++   LK+ G R 
Sbjct:    35 PSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKV-EIEDDSV---LKISGERH 90

Query:    73 LAGGR----WN-------QFSELYKIPETCDINNINSVFQGGVLTIIMP 110
             +        W+       QFS  +K+PE   ++ + +  + GVLT+ +P
Sbjct:    91 VEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVTVP 139


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.127   0.347    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      339       303   0.00097  115 3  11 23  0.50    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  195 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.59u 0.15s 31.74t   Elapsed:  00:00:02
  Total cpu time:  31.59u 0.15s 31.74t   Elapsed:  00:00:02
  Start:  Mon May 20 17:16:12 2013   End:  Mon May 20 17:16:14 2013

Back to top