BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019529
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 100
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 26 PKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEG---------RRPLAGG 76
P+ + K E + +L LPG QI+V +D LS++ E R
Sbjct: 5 PRVDIKEEVNHFVLYADLPGIDPSQIEVQ---MDKGILSIRGERKSESSTETERFSRIER 61
Query: 77 RWNQFSELYKIPETCDINNINSVFQGGVLTIIMP 110
R+ F + +P++ D + I + + GVL I +P
Sbjct: 62 RYGSFHRRFALPDSADADGITAAGRNGVLEIRIP 95
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 103
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 26 PKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEG---------RRPLAGG 76
P+ + K E + +L LPG QI+V +D LS++ E R
Sbjct: 8 PRVDIKEEVNHFVLYADLPGIDPSQIEVQ---MDKGILSIRGERKSESSTETERFSRIER 64
Query: 77 RWNQFSELYKIPETCDINNINSVFQGGVLTIIMP 110
R+ F + +P++ D + I + + GVL I +P
Sbjct: 65 RYGSFHRRFALPDSADADGITAAGRNGVLEIRIP 98
>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
Length = 161
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 39 LLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQF--------SELY---KI 87
++ +LPG KE I ++N D + + K R PL + E+Y K+
Sbjct: 70 VIAWLPGVNKEDI-ILNAVGDTLEIRAK---RSPLMITESERIIYSEIPEEEEIYRTIKL 125
Query: 88 PETCDINNINSVFQGGVLTIIMP 110
P T N ++ F+ GVL++I+P
Sbjct: 126 PATVKEENASAKFENGVLSVILP 148
>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
Length = 147
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 39 LLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQF--------SELY---KI 87
++ +LPG KE I ++N D + + K R PL + E+Y K+
Sbjct: 56 VIAWLPGVNKEDI-ILNAVGDTLEIRAK---RSPLMITESERIIYSEIPEEEEIYRTIKL 111
Query: 88 PETCDINNINSVFQGGVLTIIMP 110
P T N ++ F+ GVL++I+P
Sbjct: 112 PATVKEENASAKFENGVLSVILP 134
>pdb|3RJ1|C Chain C, Architecture Of The Mediator Head Module
pdb|3RJ1|J Chain J, Architecture Of The Mediator Head Module
pdb|3RJ1|Q Chain Q, Architecture Of The Mediator Head Module
Length = 223
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 132 SQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEE-STQLDSQKTASLVDDITKQIDESG 190
SQ ++ TST+Q Q + V P P+ TTS E T L +K VD+ K + E+
Sbjct: 74 SQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTLLRKKNIPEVDEWXKYVRETS 133
Query: 191 GETACQKADE 200
G T DE
Sbjct: 134 GVTTALLKDE 143
>pdb|2JPT|A Chain A, Structural Changes Induced In Apo-s100a1 Protein By The
Disulphide Formation Between Its Cys85 Residue And B-
Mercaptoethanol
pdb|2JPT|B Chain B, Structural Changes Induced In Apo-s100a1 Protein By The
Disulphide Formation Between Its Cys85 Residue And B-
Mercaptoethanol
Length = 93
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 164 TEESTQLDSQKTASLVDDITKQIDESG-GETACQK 197
TE S LD+QK A VD + K++DE G GE Q+
Sbjct: 39 TELSGFLDAQKDADAVDKVMKELDEDGDGEVDFQE 73
>pdb|4GWP|C Chain C, Structure Of The Mediator Head Module From S. Cerevisiae
pdb|4GWQ|C Chain C, Structure Of The Mediator Head Module From S. Cerevisiae
In Complex With The Carboxy-Terminal Domain (Ctd) Of Rna
Polymerase Ii Rpb1 Subunit
Length = 407
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 132 SQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEE-STQLDSQKTASLVDDITKQIDESG 190
SQ ++ TST+Q Q + V P P+ TTS E T L +K VD+ K + E+
Sbjct: 74 SQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTLLRKKNIPEVDEWMKYVRETS 133
Query: 191 GETACQKADE 200
G T DE
Sbjct: 134 GVTTALLKDE 143
>pdb|2LLS|A Chain A, Solution Structure Of Human Apo-S100a1 C85m
pdb|2LLS|B Chain B, Solution Structure Of Human Apo-S100a1 C85m
Length = 93
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 164 TEESTQLDSQKTASLVDDITKQIDESG-GETACQK 197
TE S LD+QK VD + K++DE+G GE Q+
Sbjct: 39 TELSGFLDAQKDVDAVDKVMKELDENGDGEVDFQE 73
>pdb|2LLT|A Chain A, Post-Translational S-Nitrosylation Is An Endogenous Factor
Fine-Tuning Human S100a1 Protein Properties
pdb|2LLT|B Chain B, Post-Translational S-Nitrosylation Is An Endogenous Factor
Fine-Tuning Human S100a1 Protein Properties
Length = 93
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 164 TEESTQLDSQKTASLVDDITKQIDESG-GETACQK 197
TE S LD+QK VD + K++DE+G GE Q+
Sbjct: 39 TELSGFLDAQKDVDAVDKVMKELDENGDGEVDFQE 73
>pdb|3OA3|A Chain A, Crystal Structure Of A Putative Deoxyribose-Phosphate
Aldolase From Coccidioides Immitis
pdb|3OA3|B Chain B, Crystal Structure Of A Putative Deoxyribose-Phosphate
Aldolase From Coccidioides Immitis
Length = 288
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 155 PSPQKVTTS-TEESTQLDSQKTASLVDDITKQIDESGGETACQKADEMGHAVE 206
P+P+ V+ + + TQL T S +D + + E G T C + D + AV+
Sbjct: 51 PAPEVVSIAQIIDHTQLSLSATGSQIDVLCAEAKEYGFATVCVRPDYVSRAVQ 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.127 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,556,061
Number of Sequences: 62578
Number of extensions: 300575
Number of successful extensions: 595
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 26
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)