BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019529
(339 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XIE3|HS17A_ARATH 17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana
GN=HSP17.6A PE=1 SV=1
Length = 155
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 15/103 (14%)
Query: 27 KSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPL----AGGRWNQ-- 80
+ +WK +A + LPG KE++KV D++ LK+ G R + W++
Sbjct: 47 RVDWKETAEAHVFKADLPGMKKEEVKV-EIEDDSV---LKISGERHVEKEEKQDTWHRVE 102
Query: 81 -----FSELYKIPETCDINNINSVFQGGVLTIIMPKIKNNAQK 118
FS +++PE ++ + + + GVLT+ +PK++ N +K
Sbjct: 103 RSSGGFSRKFRLPENVKMDQVKASMENGVLTVTVPKVETNKKK 145
>sp|O49710|HS154_ARATH 15.4 kDa class V heat shock protein OS=Arabidopsis thaliana
GN=HSP15.4 PE=2 SV=1
Length = 134
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 30 WKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGG--RWNQFSELYKI 87
W D+ V LPG KE+IKV D+I L ++ E P++ F +++
Sbjct: 30 WSQSPDSHTFSVDLPGLRKEEIKV--EIEDSIYLIIRTEAT-PMSPPDQPLKTFKRKFRL 86
Query: 88 PETCDINNINSVFQGGVLTIIMPK 111
PE+ D+ I++ ++ GVLT+I+PK
Sbjct: 87 PESIDMIGISAGYEDGVLTVIVPK 110
>sp|Q9LNW0|HS178_ARATH 17.8 kDa class I heat shock protein OS=Arabidopsis thaliana
GN=HSP17.8 PE=2 SV=1
Length = 157
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 15/101 (14%)
Query: 29 EWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPL----AGGRWN----- 79
+WK +A + LPG KE++KV D++ LK+ G R + W+
Sbjct: 51 DWKETAEAHVFKADLPGMKKEEVKV-EIEDDSV---LKISGERHVEKEEKQDTWHRVERS 106
Query: 80 --QFSELYKIPETCDINNINSVFQGGVLTIIMPKIKNNAQK 118
QFS +K+PE ++ + + + GVLT+ +PK++ +K
Sbjct: 107 SGQFSRKFKLPENVKMDQVKASMENGVLTVTVPKVEEAKKK 147
>sp|Q92IQ7|HSPC1_RICCN Small heat shock protein C1 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=hspC1 PE=3 SV=1
Length = 167
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 26/106 (24%)
Query: 21 YENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQ 80
YE+ KS + +D I+++ +PGF K QIKV KV G + G +
Sbjct: 61 YESNSIKSNFITKDKQYIIVMEVPGFDKSQIKV------------KVNGNKLFITGNIEE 108
Query: 81 --------------FSELYKIPETCDINNINSVFQGGVLTIIMPKI 112
F+ + + E D NI+S + G+LTII+P+I
Sbjct: 109 KNKADYSDNYMNKNFNYVISLYEDVDQANISSSLKNGILTIILPRI 154
>sp|Q4UKR7|HSPC1_RICFE Small heat shock protein C1 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=hspC1 PE=3 SV=2
Length = 167
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 21 YENFKPKSEWKHEDDASILLVYLPGFVKEQIKV-MNTYVDNITLSLKVEGRRPLAGGRWN 79
YE+ KS + +D I+++ +PGF K QIK+ +N IT +++ + + + N
Sbjct: 61 YESNSIKSNFITKDKQYIIIMEVPGFDKSQIKIKVNGNKLFITRNIEEKNKADDSDNYMN 120
Query: 80 Q-FSELYKIPETCDINNINSVFQGGVLTIIMPKI 112
+ F+ + + E D NI+S + G+LTII+P+I
Sbjct: 121 KNFNYVISLYEDVDQANISSSLKNGILTIILPRI 154
>sp|Q68X97|HSPC1_RICTY Small heat shock protein C1 OS=Rickettsia typhi (strain ATCC VR-144
/ Wilmington) GN=hspC1 PE=3 SV=1
Length = 163
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 26/106 (24%)
Query: 21 YENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQ 80
YE+ KS++ +D ++++ +PGF K QIKV K+ G++ G +
Sbjct: 57 YESSSIKSKFITKDKQYVIIMEVPGFDKNQIKV------------KLNGKKLFIAGNIEE 104
Query: 81 --------------FSELYKIPETCDINNINSVFQGGVLTIIMPKI 112
F+ + + E D NI++ + G+LTII+P+I
Sbjct: 105 KNKANDSDNYMNKNFNYVISLYEDVDQTNISARLKNGILTIILPRI 150
>sp|Q4UJB0|HSPC3_RICFE Small heat shock protein C3 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=hspc3-1 PE=3 SV=1
Length = 196
Score = 38.5 bits (88), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 27 KSEWKHEDDASILLVYLPGFVKEQIKV-MNT----YVDNITLSLKVEGRRPLAGGRWNQF 81
++++ +D IL++ +PG+ K QIKV +N+ N+ + K E +N
Sbjct: 96 RTKFITQDKQYILVLEVPGYDKSQIKVKVNSNKLFITGNVEQNNKSEASDDYTKRNFNYV 155
Query: 82 SELYKIPETCDINNINSVFQGGVLTIIMPKIKNNAQKDAK 121
LY E D NNI+S + G+LTI +P+I+ +KDAK
Sbjct: 156 VSLY---EDVDQNNISSNLKNGILTITLPRIE-VKEKDAK 191
>sp|Q9ZW31|HS17B_ARATH 17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana
GN=HSP17.6B PE=2 SV=1
Length = 153
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 27 KSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPL----AGGRWN--- 79
+ +W+ +A + LPG +K++ + D++ LK+ G R + W+
Sbjct: 47 RVDWRETPEAHVFKADLPG-LKKEEVKVEIEEDSV---LKISGERHVEKEDKNDTWHRVE 102
Query: 80 ----QFSELYKIPETCDINNINSVFQGGVLTIIMPK 111
QF+ +++PE ++ + + + GVLT+ +PK
Sbjct: 103 RSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPK 138
>sp|Q943E7|HS16C_ORYSJ 16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp.
japonica GN=HSP16.9C PE=2 SV=1
Length = 149
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 80 QFSELYKIPETCDINNINSVFQGGVLTIIMPK 111
QF +++PE ++ + + + GVLT+ +PK
Sbjct: 103 QFMRRFRLPENAKVDQVKASMENGVLTVTVPK 134
>sp|P30693|HSP11_HELAN 17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6
PE=2 SV=1
Length = 153
Score = 31.6 bits (70), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 80 QFSELYKIPETCDINNINSVFQGGVLTIIMPK 111
+F +++PE ++ + ++ + GVLT+++PK
Sbjct: 106 KFIRRFRLPENAKMDEVKAMMENGVLTVVVPK 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.125 0.335
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,064,143
Number of Sequences: 539616
Number of extensions: 5295082
Number of successful extensions: 64832
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 2117
Number of HSP's that attempted gapping in prelim test: 42641
Number of HSP's gapped (non-prelim): 12749
length of query: 339
length of database: 191,569,459
effective HSP length: 118
effective length of query: 221
effective length of database: 127,894,771
effective search space: 28264744391
effective search space used: 28264744391
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 61 (28.1 bits)