Query 019529
Match_columns 339
No_of_seqs 202 out of 1040
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 02:29:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 99.9 4.6E-22 9.9E-27 173.7 11.0 86 23-115 30-125 (142)
2 PRK10743 heat shock protein Ib 99.9 1E-21 2.2E-26 170.3 10.2 96 12-114 11-126 (137)
3 COG0071 IbpA Molecular chapero 99.9 2E-21 4.4E-26 167.9 11.1 88 24-116 39-137 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 2.1E-21 4.5E-26 155.4 9.8 81 27-111 1-92 (92)
5 cd06471 ACD_LpsHSP_like Group 99.8 2.8E-20 6.1E-25 148.4 10.2 80 26-111 1-93 (93)
6 cd06479 ACD_HspB7_like Alpha c 99.8 2.7E-20 5.8E-25 148.5 9.6 78 29-111 2-81 (81)
7 cd06497 ACD_alphaA-crystallin_ 99.8 7.1E-20 1.5E-24 146.7 9.9 79 28-111 3-86 (86)
8 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 1.2E-19 2.6E-24 144.3 9.7 78 29-111 1-83 (83)
9 cd06498 ACD_alphaB-crystallin_ 99.8 1.4E-19 3E-24 144.6 9.7 78 30-112 2-84 (84)
10 cd06470 ACD_IbpA-B_like Alpha- 99.8 2.3E-19 5E-24 143.8 10.2 79 26-111 1-90 (90)
11 PF00011 HSP20: Hsp20/alpha cr 99.8 4.7E-19 1E-23 142.3 11.7 84 29-117 1-93 (102)
12 cd06475 ACD_HspB1_like Alpha c 99.8 2.4E-19 5.2E-24 143.7 9.8 78 28-110 3-85 (86)
13 cd06476 ACD_HspB2_like Alpha c 99.8 6.1E-19 1.3E-23 140.9 9.5 77 30-111 2-83 (83)
14 cd06526 metazoan_ACD Alpha-cry 99.8 2.1E-18 4.5E-23 135.9 8.9 73 34-111 6-83 (83)
15 cd06477 ACD_HspB3_Like Alpha c 99.7 6.4E-18 1.4E-22 135.5 9.4 75 31-110 3-82 (83)
16 cd06481 ACD_HspB9_like Alpha c 99.7 6.3E-18 1.4E-22 135.7 9.1 75 32-111 4-87 (87)
17 cd06464 ACD_sHsps-like Alpha-c 99.7 1.5E-17 3.3E-22 127.9 9.8 78 29-111 1-88 (88)
18 cd06482 ACD_HspB10 Alpha cryst 99.7 2.6E-17 5.7E-22 133.1 8.9 75 32-111 5-87 (87)
19 cd06480 ACD_HspB8_like Alpha-c 99.6 2.8E-15 6E-20 122.4 8.9 78 28-110 8-90 (91)
20 KOG0710 Molecular chaperone (s 99.5 6E-14 1.3E-18 127.9 5.8 93 20-116 79-184 (196)
21 cd00298 ACD_sHsps_p23-like Thi 99.4 7.9E-13 1.7E-17 97.1 9.4 77 30-111 1-80 (80)
22 KOG3591 Alpha crystallins [Pos 99.3 6.3E-12 1.4E-16 113.4 11.0 86 27-117 64-154 (173)
23 cd06469 p23_DYX1C1_like p23_li 99.2 1.7E-10 3.7E-15 88.5 8.8 71 30-114 1-71 (78)
24 cd06463 p23_like Proteins cont 98.8 3.8E-08 8.1E-13 74.4 9.5 76 30-114 1-76 (84)
25 PF05455 GvpH: GvpH; InterPro 98.7 6.8E-08 1.5E-12 87.9 10.0 81 24-116 90-172 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.5 6.6E-07 1.4E-11 69.2 8.1 77 29-114 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.3 1.8E-05 3.8E-10 59.5 11.9 77 26-111 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 97.8 0.00021 4.6E-09 58.7 10.6 78 26-113 1-78 (108)
29 PF08190 PIH1: pre-RNA process 97.8 6.8E-05 1.5E-09 71.5 8.2 66 33-110 259-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 97.5 0.00085 1.8E-08 52.6 8.7 77 29-114 1-77 (84)
31 cd06467 p23_NUDC_like p23_like 97.3 0.0015 3.3E-08 50.7 8.6 75 28-114 1-77 (85)
32 cd06488 p23_melusin_like p23_l 97.2 0.0053 1.1E-07 49.0 10.2 79 27-114 2-80 (87)
33 cd06468 p23_CacyBP p23_like do 97.2 0.0063 1.4E-07 48.2 10.5 79 27-114 3-85 (92)
34 cd06493 p23_NUDCD1_like p23_NU 96.9 0.0086 1.9E-07 47.4 9.2 75 28-114 1-77 (85)
35 cd00237 p23 p23 binds heat sho 96.0 0.11 2.3E-06 43.7 10.9 79 26-115 2-80 (106)
36 PLN03088 SGT1, suppressor of 95.8 0.052 1.1E-06 53.5 9.4 81 25-114 156-236 (356)
37 cd06494 p23_NUDCD2_like p23-li 95.7 0.078 1.7E-06 43.6 8.5 77 25-114 5-83 (93)
38 cd06490 p23_NCB5OR p23_like do 95.3 0.37 8E-06 38.6 11.0 76 28-114 1-80 (87)
39 KOG1309 Suppressor of G2 allel 94.6 0.11 2.5E-06 48.2 7.0 82 25-115 3-84 (196)
40 cd06492 p23_mNUDC_like p23-lik 88.5 4.6 9.9E-05 32.5 8.9 75 28-114 1-79 (87)
41 cd06495 p23_NUDCD3_like p23-li 85.0 11 0.00023 31.7 9.4 80 25-113 4-86 (102)
42 PF14913 DPCD: DPCD protein fa 70.4 23 0.00051 33.3 7.9 78 25-113 86-170 (194)
43 PF14730 DUF4468: Domain of un 69.5 15 0.00033 29.6 5.8 67 37-111 1-85 (91)
44 KOG3158 HSP90 co-chaperone p23 67.5 21 0.00044 33.3 6.8 81 24-115 6-86 (180)
45 KOG1667 Zn2+-binding protein M 59.2 42 0.00092 33.3 7.7 83 26-116 215-297 (320)
46 cd06482 ACD_HspB10 Alpha cryst 55.9 18 0.0004 29.4 4.0 35 79-114 8-42 (87)
47 cd06478 ACD_HspB4-5-6 Alpha-cr 55.5 22 0.00047 28.2 4.3 32 79-111 7-38 (83)
48 cd06477 ACD_HspB3_Like Alpha c 53.0 22 0.00047 28.7 3.9 34 79-113 7-40 (83)
49 COG5091 SGT1 Suppressor of G2 51.9 7.4 0.00016 38.9 1.3 84 25-116 176-259 (368)
50 cd06497 ACD_alphaA-crystallin_ 51.6 24 0.00053 28.2 4.0 32 79-111 10-41 (86)
51 cd06476 ACD_HspB2_like Alpha c 50.9 24 0.00052 28.2 3.9 32 79-111 7-38 (83)
52 cd06471 ACD_LpsHSP_like Group 49.7 29 0.00062 27.4 4.2 34 79-113 10-43 (93)
53 PF00011 HSP20: Hsp20/alpha cr 47.1 39 0.00084 26.8 4.6 33 79-112 7-39 (102)
54 cd06470 ACD_IbpA-B_like Alpha- 45.3 41 0.00088 26.8 4.4 35 79-114 11-45 (90)
55 cd06479 ACD_HspB7_like Alpha c 44.2 37 0.0008 27.2 4.0 32 79-111 8-39 (81)
56 PRK10743 heat shock protein Ib 43.3 34 0.00075 30.0 4.0 32 80-112 46-77 (137)
57 cd06498 ACD_alphaB-crystallin_ 41.7 43 0.00093 26.7 4.0 31 79-110 7-37 (84)
58 cd06475 ACD_HspB1_like Alpha c 41.1 46 0.00099 26.6 4.1 32 79-111 10-41 (86)
59 PF01299 Lamp: Lysosome-associ 39.3 18 0.00038 35.2 1.7 27 310-336 274-300 (306)
60 PF13349 DUF4097: Domain of un 37.7 2.5E+02 0.0054 23.7 8.4 73 27-108 67-147 (166)
61 cd06472 ACD_ScHsp26_like Alpha 37.5 60 0.0013 25.7 4.2 33 79-112 9-42 (92)
62 cd06526 metazoan_ACD Alpha-cry 36.2 64 0.0014 25.1 4.2 34 79-113 7-40 (83)
63 cd06481 ACD_HspB9_like Alpha c 35.7 63 0.0014 25.9 4.1 33 79-112 7-39 (87)
64 PRK11597 heat shock chaperone 32.5 61 0.0013 28.7 3.9 32 80-112 44-75 (142)
65 PF09049 SNN_transmemb: Stanni 30.2 15 0.00032 25.2 -0.3 18 312-329 12-29 (33)
66 PF12992 DUF3876: Domain of un 29.9 96 0.0021 25.9 4.4 47 17-68 12-68 (95)
67 cd06464 ACD_sHsps-like Alpha-c 28.4 1.2E+02 0.0026 22.7 4.4 36 79-115 7-42 (88)
68 COG0071 IbpA Molecular chapero 25.5 1.1E+02 0.0025 26.4 4.3 33 80-113 51-83 (146)
69 COG4004 Uncharacterized protei 25.4 1.4E+02 0.003 25.4 4.5 34 28-70 26-59 (96)
70 cd06467 p23_NUDC_like p23_like 24.8 1.3E+02 0.0028 22.9 4.1 31 80-110 9-39 (85)
71 cd00503 Frataxin Frataxin is a 24.0 69 0.0015 27.0 2.6 17 94-110 28-44 (105)
72 KOG2265 Nuclear distribution p 23.8 3.5E+02 0.0077 25.3 7.3 80 23-114 16-97 (179)
73 PF15099 PIRT: Phosphoinositid 23.7 60 0.0013 28.9 2.2 47 292-339 31-79 (129)
74 TIGR03422 mito_frataxin fratax 23.6 56 0.0012 27.3 1.9 15 97-111 30-44 (97)
75 PRK05518 rpl6p 50S ribosomal p 23.4 3E+02 0.0064 25.4 6.8 45 48-110 13-57 (180)
76 TIGR03653 arch_L6P archaeal ri 23.3 3.2E+02 0.007 24.9 6.9 45 48-110 7-51 (170)
77 KOG3591 Alpha crystallins [Pos 22.6 1.5E+02 0.0033 27.1 4.7 41 42-89 122-163 (173)
78 PF01491 Frataxin_Cyay: Fratax 22.5 89 0.0019 26.3 3.0 18 94-111 30-47 (109)
79 TIGR03654 L6_bact ribosomal pr 22.4 3.1E+02 0.0067 24.9 6.6 44 48-110 11-54 (175)
80 PRK13183 psbN photosystem II r 22.1 52 0.0011 24.5 1.3 22 311-332 10-31 (46)
81 PF13633 N_methyl_3: Prokaryot 21.3 45 0.00097 21.3 0.7 14 315-328 8-21 (22)
82 KOG3413 Mitochondrial matrix p 21.3 46 0.001 30.3 1.1 27 88-115 66-92 (156)
83 PRK00446 cyaY frataxin-like pr 21.1 75 0.0016 26.9 2.2 16 96-111 29-44 (105)
84 TIGR03421 FeS_CyaY iron donor 20.7 77 0.0017 26.6 2.2 16 96-111 27-42 (102)
85 CHL00020 psbN photosystem II p 20.2 61 0.0013 23.8 1.3 21 312-332 8-28 (43)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.87 E-value=4.6e-22 Score=173.70 Aligned_cols=86 Identities=19% Similarity=0.315 Sum_probs=74.9
Q ss_pred cCCCceeEEE-cCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecC--C-------CceeEEEEEEECCCCCC
Q 019529 23 NFKPKSEWKH-EDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA--G-------GRWNQFSELYKIPETCD 92 (339)
Q Consensus 23 ~f~P~vDI~E-tdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e--~-------~~~g~F~R~f~LPe~VD 92 (339)
.+.|++||++ ++++|+|.++||||+++||+|. ++ ++.|+|+|++... + .+||.|+|+|.||++||
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~---v~--~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd 104 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQ---LE--GTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENME 104 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEE---EE--CCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcc
Confidence 3559999998 5789999999999999999999 64 7999999997643 1 25789999999999999
Q ss_pred cCceeEEEeCCEEEEEeecCCCC
Q 019529 93 INNINSVFQGGVLTIIMPKIKNN 115 (339)
Q Consensus 93 ~d~IkAsfenGVLtItlPK~~~~ 115 (339)
.+ +|+|+||||+|+|||..+.
T Consensus 105 ~~--~A~~~nGVL~I~lPK~~~~ 125 (142)
T PRK11597 105 VS--GATFVNGLLHIDLIRNEPE 125 (142)
T ss_pred cC--cCEEcCCEEEEEEeccCcc
Confidence 98 6999999999999997433
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.86 E-value=1e-21 Score=170.32 Aligned_cols=96 Identities=13% Similarity=0.256 Sum_probs=79.8
Q ss_pred CCchhhhhhcccCC----------CceeEEE-cCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCC-----
Q 019529 12 QPRQLMRRTYENFK----------PKSEWKH-EDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAG----- 75 (339)
Q Consensus 12 R~~~~~~rv~e~f~----------P~vDI~E-tdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~----- 75 (339)
+....|+++|+.|. |++||.+ ++++|+|.++||||+++||+|. ++ ++.|+|+|++....
T Consensus 11 ~~~~~~d~lf~~~~~~~~~~~~~~p~~di~ee~~~~~~v~aelPGv~kedi~V~---v~--~~~LtI~ge~~~~~~~~~~ 85 (137)
T PRK10743 11 RSAIGFDRLFNLLENNQSQSNGGYPPYNVELVDENHYRIAIAVAGFAESELEIT---AQ--DNLLVVKGAHADEQKERTY 85 (137)
T ss_pred hcccCHHHHhhhhhhhhhcccCCCCcEEEEEcCCCEEEEEEECCCCCHHHeEEE---EE--CCEEEEEEEECccccCCcE
Confidence 44445666665433 8999994 8999999999999999999999 64 78999999986531
Q ss_pred ----CceeEEEEEEECCCCCCcCceeEEEeCCEEEEEeecCCC
Q 019529 76 ----GRWNQFSELYKIPETCDINNINSVFQGGVLTIIMPKIKN 114 (339)
Q Consensus 76 ----~~~g~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK~~~ 114 (339)
..+|.|+|+|.||++||.++ |+|+||||+|+|||..+
T Consensus 86 ~~~Er~~g~F~R~~~LP~~Vd~~~--A~~~dGVL~I~lPK~~~ 126 (137)
T PRK10743 86 LYQGIAERNFERKFQLAENIHVRG--ANLVNGLLYIDLERVIP 126 (137)
T ss_pred EEEEEECCEEEEEEECCCCcccCc--CEEeCCEEEEEEeCCCc
Confidence 14689999999999999994 99999999999999743
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2e-21 Score=167.91 Aligned_cols=88 Identities=26% Similarity=0.505 Sum_probs=80.7
Q ss_pred CCCceeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecC----C-------CceeEEEEEEECCCCCC
Q 019529 24 FKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA----G-------GRWNQFSELYKIPETCD 92 (339)
Q Consensus 24 f~P~vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e----~-------~~~g~F~R~f~LPe~VD 92 (339)
+.|++||+++++.|+|.++||||+++||+|. ++ ++.|+|+|++... . ..++.|+|+|.||..||
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~---~~--~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~ 113 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEIT---VE--GNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVD 113 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEE---EE--CCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccccc
Confidence 6799999999999999999999999999999 54 7899999999752 1 25799999999999999
Q ss_pred cCceeEEEeCCEEEEEeecCCCCC
Q 019529 93 INNINSVFQGGVLTIIMPKIKNNA 116 (339)
Q Consensus 93 ~d~IkAsfenGVLtItlPK~~~~~ 116 (339)
.+.|+|+|.||||+|+|||..+.+
T Consensus 114 ~~~~~A~~~nGvL~I~lpk~~~~~ 137 (146)
T COG0071 114 PEVIKAKYKNGLLTVTLPKAEPEE 137 (146)
T ss_pred ccceeeEeeCcEEEEEEecccccc
Confidence 999999999999999999999875
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.86 E-value=2.1e-21 Score=155.36 Aligned_cols=81 Identities=30% Similarity=0.626 Sum_probs=72.4
Q ss_pred ceeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecC----C-------CceeEEEEEEECCCCCCcCc
Q 019529 27 KSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA----G-------GRWNQFSELYKIPETCDINN 95 (339)
Q Consensus 27 ~vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e----~-------~~~g~F~R~f~LPe~VD~d~ 95 (339)
++||+|++++|+|.++||||+++||+|. ++ +++.|+|+|++... + ..+++|.|+|.||.+||.++
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~---v~-~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~ 76 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVE---VE-DGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADE 76 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEE---Ee-CCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHH
Confidence 4899999999999999999999999999 53 24689999998643 1 14689999999999999999
Q ss_pred eeEEEeCCEEEEEeec
Q 019529 96 INSVFQGGVLTIIMPK 111 (339)
Q Consensus 96 IkAsfenGVLtItlPK 111 (339)
|+|+|+||||+|+|||
T Consensus 77 i~A~~~nGvL~I~lPK 92 (92)
T cd06472 77 VKAFLENGVLTVTVPK 92 (92)
T ss_pred CEEEEECCEEEEEecC
Confidence 9999999999999997
No 5
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.83 E-value=2.8e-20 Score=148.44 Aligned_cols=80 Identities=33% Similarity=0.532 Sum_probs=72.5
Q ss_pred CceeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecC----C---------CceeEEEEEEECCCCCC
Q 019529 26 PKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA----G---------GRWNQFSELYKIPETCD 92 (339)
Q Consensus 26 P~vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e----~---------~~~g~F~R~f~LPe~VD 92 (339)
|++||+++++.|+|.++||||+++||+|. ++ ++.|+|+|++... + ..+++|.|.|.|| ++|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~---~~--~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~ 74 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLD---YK--DGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVD 74 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEE---EE--CCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCC
Confidence 57999999999999999999999999999 54 7899999999742 1 1578999999999 799
Q ss_pred cCceeEEEeCCEEEEEeec
Q 019529 93 INNINSVFQGGVLTIIMPK 111 (339)
Q Consensus 93 ~d~IkAsfenGVLtItlPK 111 (339)
.+.|+|+|.||||+|+|||
T Consensus 75 ~~~i~A~~~dGvL~I~lPK 93 (93)
T cd06471 75 EEEIKAKYENGVLKITLPK 93 (93)
T ss_pred HHHCEEEEECCEEEEEEcC
Confidence 9999999999999999997
No 6
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.83 E-value=2.7e-20 Score=148.47 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=72.1
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecC-CCceeEEEEEEECCCCCCcCceeEEE-eCCEEE
Q 019529 29 EWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA-GGRWNQFSELYKIPETCDINNINSVF-QGGVLT 106 (339)
Q Consensus 29 DI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e-~~~~g~F~R~f~LPe~VD~d~IkAsf-enGVLt 106 (339)
||.+++++|.|.+|||||+++||+|. ++ ++.|+|+|+|+.. +..+++|+|+|.||.+||+++|+|+| +||||+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~---v~--~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~ 76 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVT---TS--NNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLT 76 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEE---EE--CCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEE
Confidence 68999999999999999999999999 64 7899999999755 45689999999999999999999998 999999
Q ss_pred EEeec
Q 019529 107 IIMPK 111 (339)
Q Consensus 107 ItlPK 111 (339)
|++++
T Consensus 77 I~~~~ 81 (81)
T cd06479 77 IKARR 81 (81)
T ss_pred EEecC
Confidence 99985
No 7
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.82 E-value=7.1e-20 Score=146.73 Aligned_cols=79 Identities=23% Similarity=0.356 Sum_probs=70.3
Q ss_pred eeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecC--CC--ceeEEEEEEECCCCCCcCceeEEE-eC
Q 019529 28 SEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA--GG--RWNQFSELYKIPETCDINNINSVF-QG 102 (339)
Q Consensus 28 vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e--~~--~~g~F~R~f~LPe~VD~d~IkAsf-en 102 (339)
.+|.+++++|.|.++||||+++||+|. ++ ++.|+|+|++... +. ..+.|+|+|.||.+||.++|+|+| +|
T Consensus 3 ~~v~e~~~~~~v~~dlpG~~~edi~V~---v~--~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~d 77 (86)
T cd06497 3 SEVRSDRDKFTIYLDVKHFSPEDLTVK---VL--DDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSAD 77 (86)
T ss_pred ceEEEcCCEEEEEEECCCCCHHHeEEE---EE--CCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCC
Confidence 378999999999999999999999999 54 7899999987542 22 336799999999999999999999 79
Q ss_pred CEEEEEeec
Q 019529 103 GVLTIIMPK 111 (339)
Q Consensus 103 GVLtItlPK 111 (339)
|||+|++||
T Consensus 78 GvL~I~~PK 86 (86)
T cd06497 78 GMLTFSGPK 86 (86)
T ss_pred CEEEEEecC
Confidence 999999997
No 8
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.81 E-value=1.2e-19 Score=144.25 Aligned_cols=78 Identities=24% Similarity=0.321 Sum_probs=68.9
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecC--CC--ceeEEEEEEECCCCCCcCceeEEE-eCC
Q 019529 29 EWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA--GG--RWNQFSELYKIPETCDINNINSVF-QGG 103 (339)
Q Consensus 29 DI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e--~~--~~g~F~R~f~LPe~VD~d~IkAsf-enG 103 (339)
+|.+++++|.|.+|||||+++||+|. ++ ++.|+|+|++... +. .++.|+|+|.||.+||.++|+|+| +||
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~---v~--~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dG 75 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVK---VL--GDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADG 75 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEE---EE--CCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCC
Confidence 46789999999999999999999999 64 6899999987542 22 346799999999999999999999 699
Q ss_pred EEEEEeec
Q 019529 104 VLTIIMPK 111 (339)
Q Consensus 104 VLtItlPK 111 (339)
||+|++||
T Consensus 76 vL~I~~PK 83 (83)
T cd06478 76 VLTISGPR 83 (83)
T ss_pred EEEEEecC
Confidence 99999997
No 9
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.81 E-value=1.4e-19 Score=144.58 Aligned_cols=78 Identities=26% Similarity=0.316 Sum_probs=69.2
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecC--C--CceeEEEEEEECCCCCCcCceeEEEe-CCE
Q 019529 30 WKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA--G--GRWNQFSELYKIPETCDINNINSVFQ-GGV 104 (339)
Q Consensus 30 I~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e--~--~~~g~F~R~f~LPe~VD~d~IkAsfe-nGV 104 (339)
+..++++|.|.+|||||+++||+|. ++ ++.|+|+|++... + ..++.|.|+|.||.+||.++|+|+|. |||
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~---v~--~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGv 76 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVK---VL--GDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGV 76 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEE---EE--CCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCE
Confidence 5778999999999999999999999 64 7899999987543 1 24578999999999999999999995 999
Q ss_pred EEEEeecC
Q 019529 105 LTIIMPKI 112 (339)
Q Consensus 105 LtItlPK~ 112 (339)
|+|++||+
T Consensus 77 L~I~lPk~ 84 (84)
T cd06498 77 LTVCGPRK 84 (84)
T ss_pred EEEEEeCC
Confidence 99999985
No 10
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.80 E-value=2.3e-19 Score=143.83 Aligned_cols=79 Identities=15% Similarity=0.358 Sum_probs=70.5
Q ss_pred CceeEEEcC-CEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCC----------CceeEEEEEEECCCCCCcC
Q 019529 26 PKSEWKHED-DASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAG----------GRWNQFSELYKIPETCDIN 94 (339)
Q Consensus 26 P~vDI~Etd-d~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~----------~~~g~F~R~f~LPe~VD~d 94 (339)
|++||++++ ++|+|.++||||++++|+|. ++ ++.|+|+|+|.... ..+++|.|+|.||.+||.+
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~---~~--~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~ 75 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIE---VE--NNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK 75 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEE---EE--CCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC
Confidence 789999975 99999999999999999999 54 78999999987652 1378999999999999975
Q ss_pred ceeEEEeCCEEEEEeec
Q 019529 95 NINSVFQGGVLTIIMPK 111 (339)
Q Consensus 95 ~IkAsfenGVLtItlPK 111 (339)
+|+|+||||+|+||+
T Consensus 76 --~A~~~~GvL~I~l~~ 90 (90)
T cd06470 76 --GAELENGLLTIDLER 90 (90)
T ss_pred --eeEEeCCEEEEEEEC
Confidence 899999999999985
No 11
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.80 E-value=4.7e-19 Score=142.31 Aligned_cols=84 Identities=36% Similarity=0.637 Sum_probs=70.5
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeec--CC-------CceeEEEEEEECCCCCCcCceeEE
Q 019529 29 EWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPL--AG-------GRWNQFSELYKIPETCDINNINSV 99 (339)
Q Consensus 29 DI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~--e~-------~~~g~F~R~f~LPe~VD~d~IkAs 99 (339)
||.+++++|.|.++||||.+++|+|. ++ ++.|.|+|.+.. .+ .+++.|.|+|.||.++|.++|+|.
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~---~~--~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~ 75 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIK---VD--DNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKAS 75 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEE---EE--TTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEE---Ee--cCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEE
Confidence 79999999999999999999999999 54 689999999982 12 246899999999999999999999
Q ss_pred EeCCEEEEEeecCCCCCc
Q 019529 100 FQGGVLTIIMPKIKNNAQ 117 (339)
Q Consensus 100 fenGVLtItlPK~~~~~p 117 (339)
|+||+|+|++||.....+
T Consensus 76 ~~~GvL~I~~pk~~~~~~ 93 (102)
T PF00011_consen 76 YENGVLTITIPKKEEEED 93 (102)
T ss_dssp ETTSEEEEEEEBSSSCTT
T ss_pred ecCCEEEEEEEccccccC
Confidence 999999999999998865
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.80 E-value=2.4e-19 Score=143.67 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=70.8
Q ss_pred eeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecC--CC--ceeEEEEEEECCCCCCcCceeEEEe-C
Q 019529 28 SEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA--GG--RWNQFSELYKIPETCDINNINSVFQ-G 102 (339)
Q Consensus 28 vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e--~~--~~g~F~R~f~LPe~VD~d~IkAsfe-n 102 (339)
.||+++++.|.|.++||||++++|+|. ++ ++.|+|+|++... .. .+++|+|+|.||.+||.++|+|.|. |
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~---v~--~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~d 77 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVK---TK--DGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPD 77 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEE---EE--CCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCC
Confidence 589999999999999999999999999 54 6899999998653 12 4589999999999999999999997 9
Q ss_pred CEEEEEee
Q 019529 103 GVLTIIMP 110 (339)
Q Consensus 103 GVLtItlP 110 (339)
|||+|++|
T Consensus 78 GvL~I~lP 85 (86)
T cd06475 78 GILTVEAP 85 (86)
T ss_pred CeEEEEec
Confidence 99999998
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.78 E-value=6.1e-19 Score=140.89 Aligned_cols=77 Identities=25% Similarity=0.358 Sum_probs=67.8
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecC----CCceeEEEEEEECCCCCCcCceeEEEe-CCE
Q 019529 30 WKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA----GGRWNQFSELYKIPETCDINNINSVFQ-GGV 104 (339)
Q Consensus 30 I~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e----~~~~g~F~R~f~LPe~VD~d~IkAsfe-nGV 104 (339)
+..++++|.|.++||||+++||+|. ++ ++.|+|+|++... +..++.|+|+|.||.+||.++|+|+|. |||
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~---v~--~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGv 76 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVR---TV--DNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGI 76 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEE---EE--CCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCE
Confidence 4557899999999999999999999 54 6899999997543 124578999999999999999999996 999
Q ss_pred EEEEeec
Q 019529 105 LTIIMPK 111 (339)
Q Consensus 105 LtItlPK 111 (339)
|+|++||
T Consensus 77 L~I~~Pr 83 (83)
T cd06476 77 LCIQAPR 83 (83)
T ss_pred EEEEecC
Confidence 9999997
No 14
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.76 E-value=2.1e-18 Score=135.87 Aligned_cols=73 Identities=33% Similarity=0.481 Sum_probs=66.4
Q ss_pred CCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCC----CceeEEEEEEECCCCCCcCceeEEEeC-CEEEEE
Q 019529 34 DDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAG----GRWNQFSELYKIPETCDINNINSVFQG-GVLTII 108 (339)
Q Consensus 34 dd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~----~~~g~F~R~f~LPe~VD~d~IkAsfen-GVLtIt 108 (339)
++.|.|.+|||||+++||+|. ++ ++.|+|+|++.... ..+++|.|+|.||.+||.++|+|+|.| |||+|+
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~---v~--~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~ 80 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVK---VS--DNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIE 80 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEE---EE--CCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEE
Confidence 359999999999999999999 64 79999999987642 257899999999999999999999998 999999
Q ss_pred eec
Q 019529 109 MPK 111 (339)
Q Consensus 109 lPK 111 (339)
+||
T Consensus 81 ~Pk 83 (83)
T cd06526 81 APK 83 (83)
T ss_pred ecC
Confidence 997
No 15
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.75 E-value=6.4e-18 Score=135.45 Aligned_cols=75 Identities=16% Similarity=0.294 Sum_probs=66.6
Q ss_pred EEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecC--CC--ceeEEEEEEECCCCCCcCceeEEE-eCCEE
Q 019529 31 KHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA--GG--RWNQFSELYKIPETCDINNINSVF-QGGVL 105 (339)
Q Consensus 31 ~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e--~~--~~g~F~R~f~LPe~VD~d~IkAsf-enGVL 105 (339)
-++++.|.|.++||||+++||+|. ++ +++|+|+|++... ++ .++.|+|+|.||.+||.++|+|+| +||||
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~---v~--~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL 77 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQ---VF--EGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGIL 77 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEE---EE--CCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEE
Confidence 368899999999999999999999 64 7999999998653 22 457999999999999999999998 79999
Q ss_pred EEEee
Q 019529 106 TIIMP 110 (339)
Q Consensus 106 tItlP 110 (339)
+|+.|
T Consensus 78 ~I~~~ 82 (83)
T cd06477 78 VVETK 82 (83)
T ss_pred EEEec
Confidence 99976
No 16
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.74 E-value=6.3e-18 Score=135.75 Aligned_cols=75 Identities=27% Similarity=0.447 Sum_probs=66.6
Q ss_pred EcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecC--C--C----ceeEEEEEEECCCCCCcCceeEEE-eC
Q 019529 32 HEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA--G--G----RWNQFSELYKIPETCDINNINSVF-QG 102 (339)
Q Consensus 32 Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e--~--~----~~g~F~R~f~LPe~VD~d~IkAsf-en 102 (339)
+..+.|.|.++||||.++||+|. ++ ++.|+|+|++... . . .++.|+|+|.||.+||.+.|+|+| +|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~---v~--~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~d 78 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVR---VD--GRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPS 78 (87)
T ss_pred CccceEEEEEECCCCChHHeEEE---EE--CCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCC
Confidence 45789999999999999999999 64 7999999997643 1 1 358999999999999999999999 99
Q ss_pred CEEEEEeec
Q 019529 103 GVLTIIMPK 111 (339)
Q Consensus 103 GVLtItlPK 111 (339)
|||+|++|+
T Consensus 79 GvL~I~~P~ 87 (87)
T cd06481 79 GHLHIRAPR 87 (87)
T ss_pred ceEEEEcCC
Confidence 999999995
No 17
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.74 E-value=1.5e-17 Score=127.89 Aligned_cols=78 Identities=37% Similarity=0.614 Sum_probs=71.0
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCC----------CceeEEEEEEECCCCCCcCceeE
Q 019529 29 EWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAG----------GRWNQFSELYKIPETCDINNINS 98 (339)
Q Consensus 29 DI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~----------~~~g~F~R~f~LPe~VD~d~IkA 98 (339)
+|.++++.|+|.++||||.+++|+|. ++ ++.|.|+|++.... ..++.|.|+|.||.++|.+.|+|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~---v~--~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a 75 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVE---VE--DGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKA 75 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEE---EE--CCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEE
Confidence 57899999999999999999999999 64 69999999987542 14789999999999999999999
Q ss_pred EEeCCEEEEEeec
Q 019529 99 VFQGGVLTIIMPK 111 (339)
Q Consensus 99 sfenGVLtItlPK 111 (339)
.|.||+|+|++||
T Consensus 76 ~~~~G~L~I~~pk 88 (88)
T cd06464 76 SLENGVLTITLPK 88 (88)
T ss_pred EEeCCEEEEEEcC
Confidence 9999999999997
No 18
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.71 E-value=2.6e-17 Score=133.06 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=66.2
Q ss_pred EcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecC----C---CceeEEEEEEECCCCCCcCceeEEEeCC-
Q 019529 32 HEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA----G---GRWNQFSELYKIPETCDINNINSVFQGG- 103 (339)
Q Consensus 32 Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e----~---~~~g~F~R~f~LPe~VD~d~IkAsfenG- 103 (339)
-+++.|+|.+|||||+++||+|. ++ ++.|+|+|+|... + .++++|+|+|.||.+||.++|+|+|+||
T Consensus 5 ~~~~~~~v~adlPG~~kedI~V~---v~--~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~ 79 (87)
T cd06482 5 CDSSNVLASVDVCGFEPDQVKVK---VK--DGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGS 79 (87)
T ss_pred ccCCEEEEEEECCCCCHHHeEEE---EE--CCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCC
Confidence 36889999999999999999999 64 7999999998643 1 2579999999999999999999999965
Q ss_pred EEEEEeec
Q 019529 104 VLTIIMPK 111 (339)
Q Consensus 104 VLtItlPK 111 (339)
||+|.-|.
T Consensus 80 ~l~i~~~~ 87 (87)
T cd06482 80 VVKIETPC 87 (87)
T ss_pred EEEEeeCC
Confidence 99999873
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.60 E-value=2.8e-15 Score=122.45 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=69.0
Q ss_pred eeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecC---C-CceeEEEEEEECCCCCCcCceeEEEe-C
Q 019529 28 SEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA---G-GRWNQFSELYKIPETCDINNINSVFQ-G 102 (339)
Q Consensus 28 vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e---~-~~~g~F~R~f~LPe~VD~d~IkAsfe-n 102 (339)
--+..+++.|.|.+|+.||+++||.|. ++ +++|+|+|++... + ..++.|.|+|.||.+||.+.|+|.|. |
T Consensus 8 ~~~~~~~~~f~v~ldv~gF~pEDL~Vk---v~--~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~d 82 (91)
T cd06480 8 NPPPNSSEPWKVCVNVHSFKPEELTVK---TK--DGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPE 82 (91)
T ss_pred CCCCCCCCcEEEEEEeCCCCHHHcEEE---EE--CCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCC
Confidence 345668899999999999999999999 54 7999999998754 1 24689999999999999999999998 9
Q ss_pred CEEEEEee
Q 019529 103 GVLTIIMP 110 (339)
Q Consensus 103 GVLtItlP 110 (339)
|+|+|.+|
T Consensus 83 GvL~IeaP 90 (91)
T cd06480 83 GLLIIEAP 90 (91)
T ss_pred CeEEEEcC
Confidence 99999998
No 20
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6e-14 Score=127.93 Aligned_cols=93 Identities=29% Similarity=0.472 Sum_probs=81.2
Q ss_pred hcccCCCceeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCC-------------CceeEEEEEEE
Q 019529 20 TYENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAG-------------GRWNQFSELYK 86 (339)
Q Consensus 20 v~e~f~P~vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~-------------~~~g~F~R~f~ 86 (339)
....+.++++|.+..++|.+.++|||+++++|+|. + +++++|.|+|++..+. ..++.|.|.|.
T Consensus 79 ~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~---~-~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~ 154 (196)
T KOG0710|consen 79 AKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVE---V-EDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFE 154 (196)
T ss_pred ccccccCCcccccCCCceEEEeeCCCCCchhceEE---e-ccCcEEEEecccccccccccCCccceeehhcccceEeeec
Confidence 33456688899999999999999999999999999 5 3356899999987541 25689999999
Q ss_pred CCCCCCcCceeEEEeCCEEEEEeecCCCCC
Q 019529 87 IPETCDINNINSVFQGGVLTIIMPKIKNNA 116 (339)
Q Consensus 87 LPe~VD~d~IkAsfenGVLtItlPK~~~~~ 116 (339)
||++++.+.|+|.|.||||+|++||.....
T Consensus 155 lPenv~~d~ikA~~~nGVL~VvvpK~~~~~ 184 (196)
T KOG0710|consen 155 LPENVDVDEIKAEMENGVLTVVVPKLEPLL 184 (196)
T ss_pred CCccccHHHHHHHhhCCeEEEEEecccccc
Confidence 999999999999999999999999999853
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.44 E-value=7.9e-13 Score=97.09 Aligned_cols=77 Identities=34% Similarity=0.636 Sum_probs=69.2
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecC---CCceeEEEEEEECCCCCCcCceeEEEeCCEEE
Q 019529 30 WKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA---GGRWNQFSELYKIPETCDINNINSVFQGGVLT 106 (339)
Q Consensus 30 I~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e---~~~~g~F~R~f~LPe~VD~d~IkAsfenGVLt 106 (339)
|.++++.|.|.++|||+.+++|.|. ++ ++.|.|+|.+... ...++.|.+.|.||..+|++.++|.|.+|+|+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~---~~--~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~ 75 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVE---VE--DNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLE 75 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEE---EE--CCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEE
Confidence 6788999999999999999999999 54 6899999987643 12468999999999999999999999999999
Q ss_pred EEeec
Q 019529 107 IIMPK 111 (339)
Q Consensus 107 ItlPK 111 (339)
|+|||
T Consensus 76 i~l~K 80 (80)
T cd00298 76 ITLPK 80 (80)
T ss_pred EEEcC
Confidence 99997
No 22
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=6.3e-12 Score=113.36 Aligned_cols=86 Identities=30% Similarity=0.405 Sum_probs=76.1
Q ss_pred ceeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCC---C-ceeEEEEEEECCCCCCcCceeEEEe-
Q 019529 27 KSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAG---G-RWNQFSELYKIPETCDINNINSVFQ- 101 (339)
Q Consensus 27 ~vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~---~-~~g~F~R~f~LPe~VD~d~IkAsfe- 101 (339)
..++..+++.|.|.+|+..|.+++|.|. ++ ++.|.|.|+..... + ..+.|.|+|.||.+||++.|++.|.
T Consensus 64 ~~~~~~~~~~F~V~lDV~~F~PeEl~Vk---~~--~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~ 138 (173)
T KOG3591|consen 64 ASEIVNDKDKFEVNLDVHQFKPEELKVK---TD--DNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSS 138 (173)
T ss_pred ccccccCCCcEEEEEEcccCcccceEEE---eC--CCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCC
Confidence 4678889999999999999999999999 53 68999999876541 2 4578999999999999999999997
Q ss_pred CCEEEEEeecCCCCCc
Q 019529 102 GGVLTIIMPKIKNNAQ 117 (339)
Q Consensus 102 nGVLtItlPK~~~~~p 117 (339)
||||+|..||......
T Consensus 139 dGvLtI~ap~~~~~~~ 154 (173)
T KOG3591|consen 139 DGVLTIEAPKPPPKQD 154 (173)
T ss_pred CceEEEEccCCCCcCc
Confidence 9999999999987764
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.16 E-value=1.7e-10 Score=88.46 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=64.5
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCCEEEEEe
Q 019529 30 WKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGVLTIIM 109 (339)
Q Consensus 30 I~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenGVLtItl 109 (339)
|.++++.+.|.++|||+.+++|+|. ++ ++.|.|+| ..|.+.+.||..||++..++++.+|.|.|+|
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~---~~--~~~l~i~~---------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L 66 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIF---CS--DLYLKVNF---------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTL 66 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEE---Ee--cCEEEEcC---------CCEEEEEeCcccccccccEEEEeCCEEEEEE
Confidence 6789999999999999999999999 53 67899987 2489999999999999999999999999999
Q ss_pred ecCCC
Q 019529 110 PKIKN 114 (339)
Q Consensus 110 PK~~~ 114 (339)
||...
T Consensus 67 ~K~~~ 71 (78)
T cd06469 67 VKKEP 71 (78)
T ss_pred EeCCC
Confidence 99764
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.81 E-value=3.8e-08 Score=74.38 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=66.6
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCCEEEEEe
Q 019529 30 WKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGVLTIIM 109 (339)
Q Consensus 30 I~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenGVLtItl 109 (339)
|.++++.+.|.+++||+.++++.|. ++ ++.|+|++... ..+.|...+.|+..||++...+++.+|.|.|+|
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~---~~--~~~l~i~~~~~----~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L 71 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVE---FT--PKSLTVSVKGG----GGKEYLLEGELFGPIDPEESKWTVEDRKIEITL 71 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEE---Ee--cCEEEEEeeCC----CCCceEEeeEccCccchhhcEEEEeCCEEEEEE
Confidence 6788999999999999999999999 43 57899998643 125688889999999999999999999999999
Q ss_pred ecCCC
Q 019529 110 PKIKN 114 (339)
Q Consensus 110 PK~~~ 114 (339)
+|..+
T Consensus 72 ~K~~~ 76 (84)
T cd06463 72 KKKEP 76 (84)
T ss_pred EECCC
Confidence 99875
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.73 E-value=6.8e-08 Score=87.87 Aligned_cols=81 Identities=19% Similarity=0.341 Sum_probs=66.3
Q ss_pred CCCceeEEEcCC-EEEEEEEcCCCCCCC-eEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEe
Q 019529 24 FKPKSEWKHEDD-ASILLVYLPGFVKEQ-IKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQ 101 (339)
Q Consensus 24 f~P~vDI~Etdd-~yiL~vDLPGfkKED-IkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfe 101 (339)
..+.+++.+.++ .++|.++|||+++++ |.|. ++...+.|+|... ++|.+++.||.. +.+.+++.|.
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~---l~~d~~~L~i~~~--------~~~~krv~L~~~-~~e~~~~t~n 157 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVT---LDDDEGALTIRVG--------EKYLKRVALPWP-DPEITSATFN 157 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeE---eecCCceEEEecC--------CceEeeEecCCC-ccceeeEEEe
Confidence 457899998777 699999999999998 9999 5444667777542 357899999976 7899999999
Q ss_pred CCEEEEEeecCCCCC
Q 019529 102 GGVLTIIMPKIKNNA 116 (339)
Q Consensus 102 nGVLtItlPK~~~~~ 116 (339)
||||.|+|-+.....
T Consensus 158 NgILEIri~~~~~~~ 172 (177)
T PF05455_consen 158 NGILEIRIRRTEESS 172 (177)
T ss_pred CceEEEEEeecCCCC
Confidence 999999998876543
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.49 E-value=6.6e-07 Score=69.18 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=66.9
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCCEEEEE
Q 019529 29 EWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGVLTII 108 (339)
Q Consensus 29 DI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenGVLtIt 108 (339)
||+++++.+.|.+.+||+.++++.|. ++ .+.|.|.+... ....|...+.|+..|+++..++.+.+|.|.|+
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~---~~--~~~l~i~~~~~----~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~ 71 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVE---FN--EQSLSVSIILP----GGSEYQLELDLFGPIDPEQSKVSVLPTKVEIT 71 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEE---Ee--cCEEEEEEECC----CCCeEEEecccccccCchhcEEEEeCeEEEEE
Confidence 79999999999999999999999999 42 57899987642 12368889999999999999999999999999
Q ss_pred eecCCC
Q 019529 109 MPKIKN 114 (339)
Q Consensus 109 lPK~~~ 114 (339)
|.|...
T Consensus 72 L~K~~~ 77 (84)
T cd06466 72 LKKAEP 77 (84)
T ss_pred EEcCCC
Confidence 999864
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.31 E-value=1.8e-05 Score=59.52 Aligned_cols=77 Identities=19% Similarity=0.254 Sum_probs=63.9
Q ss_pred CceeEEEcCCEEEEEEEcCCC--CCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCC
Q 019529 26 PKSEWKHEDDASILLVYLPGF--VKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGG 103 (339)
Q Consensus 26 P~vDI~Etdd~yiL~vDLPGf--kKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenG 103 (339)
|.++|.++++.+.|.+.+++. ++++|.|. ++ .+.|.|+..... + ..|.-.+.|...|+++....++.++
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~---~~--~~~l~v~~~~~~--~--~~~~~~~~L~~~I~~~~s~~~~~~~ 71 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVD---FT--DTSLSVSIKSGD--G--KEYLLEGELFGEIDPDESTWKVKDN 71 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEE---EE--TTEEEEEEEETT--S--CEEEEEEEBSS-BECCCEEEEEETT
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEE---EE--eeEEEEEEEccC--C--ceEEEEEEEeeeEcchhcEEEEECC
Confidence 789999999999999999665 59999999 43 688999864321 1 5788888899999999999999999
Q ss_pred EEEEEeec
Q 019529 104 VLTIIMPK 111 (339)
Q Consensus 104 VLtItlPK 111 (339)
.|.|+|.|
T Consensus 72 ~i~i~L~K 79 (79)
T PF04969_consen 72 KIEITLKK 79 (79)
T ss_dssp EEEEEEEB
T ss_pred EEEEEEEC
Confidence 99999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.85 E-value=0.00021 Score=58.74 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=66.2
Q ss_pred CceeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCCEE
Q 019529 26 PKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGVL 105 (339)
Q Consensus 26 P~vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenGVL 105 (339)
|+++|+++.+.+.|.+.+||+ +++.|. +. .+.|.|++.... + ...|.-.+.|...|+++..+.++.++.|
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~---~~--~~~l~v~~~~~~-~--~~~y~~~~~L~~~I~pe~s~~~v~~~kv 70 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIK---LE--PTSLSFKAKGGG-G--GKKYEFDLEFYKEIDPEESKYKVTGRQI 70 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEE---EE--CCEEEEEEEcCC-C--CeeEEEEeEhhhhccccccEEEecCCeE
Confidence 789999999999999999998 888888 32 678999885321 1 2447778899999999999999999999
Q ss_pred EEEeecCC
Q 019529 106 TIIMPKIK 113 (339)
Q Consensus 106 tItlPK~~ 113 (339)
.|+|.|..
T Consensus 71 eI~L~K~~ 78 (108)
T cd06465 71 EFVLRKKE 78 (108)
T ss_pred EEEEEECC
Confidence 99999977
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.81 E-value=6.8e-05 Score=71.51 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=57.3
Q ss_pred cCCEEEEEEEcCCC-CCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEe--CCEEEEEe
Q 019529 33 EDDASILLVYLPGF-VKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQ--GGVLTIIM 109 (339)
Q Consensus 33 tdd~yiL~vDLPGf-kKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfe--nGVLtItl 109 (339)
..+.++|.++|||+ +..+|.|. |. ...|.|.... ..|+-.+.||..||.+..+|+|. .++|+|||
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~Ld---V~--~~~l~l~~~~-------~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtl 326 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLD---VS--EDRLSLSSPK-------PKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTL 326 (328)
T ss_pred CCceEEEEEECCCcCccceeEEE---Ee--CCEEEEEeCC-------CceEEEccCCCcccCCCceEEEccCCCEEEEEE
Confidence 36889999999999 78999999 63 6888888643 16788899999999999999997 69999999
Q ss_pred e
Q 019529 110 P 110 (339)
Q Consensus 110 P 110 (339)
|
T Consensus 327 p 327 (328)
T PF08190_consen 327 P 327 (328)
T ss_pred E
Confidence 8
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.48 E-value=0.00085 Score=52.63 Aligned_cols=77 Identities=13% Similarity=0.247 Sum_probs=64.2
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCCEEEEE
Q 019529 29 EWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGVLTII 108 (339)
Q Consensus 29 DI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenGVLtIt 108 (339)
||+++++.+.|++.++|+.++++.|. + + .+.|.+++... ++ ..|.-.+.|...|+++..+.+..++-+.|+
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~---~-~-~~~l~~~~~~~--~~--~~y~~~~~L~~~I~p~~s~~~v~~~kiei~ 71 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVE---F-E-KRELSATVKLP--SG--NDYSLKLHLLHPIVPEQSSYKILSTKIEIK 71 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEE---E-e-CCEEEEEEECC--CC--CcEEEeeecCceecchhcEEEEeCcEEEEE
Confidence 79999999999999999999999999 4 2 57899987642 11 236667899999999988888889999999
Q ss_pred eecCCC
Q 019529 109 MPKIKN 114 (339)
Q Consensus 109 lPK~~~ 114 (339)
|.|..+
T Consensus 72 L~K~~~ 77 (84)
T cd06489 72 LKKTEA 77 (84)
T ss_pred EEcCCC
Confidence 999753
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.34 E-value=0.0015 Score=50.68 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=60.5
Q ss_pred eeEEEcCCEEEEEEEcC-CCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeC-CEE
Q 019529 28 SEWKHEDDASILLVYLP-GFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQG-GVL 105 (339)
Q Consensus 28 vDI~Etdd~yiL~vDLP-GfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfen-GVL 105 (339)
+.|.++++.+.|.+.+| |+.++||.|. +. .+.|.|+... + .+.-...|...||++...-++.+ ..|
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~---~~--~~~l~v~~~~----~---~~~l~~~L~~~I~~~~s~w~~~~~~~v 68 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVE---IT--PKHLKVGVKG----G---EPLLDGELYAKVKVDESTWTLEDGKLL 68 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEE---EE--cCEEEEEECC----C---CceEcCcccCceeEcCCEEEEeCCCEE
Confidence 57999999999999997 7999999999 42 5788888642 1 12222368899999998888999 999
Q ss_pred EEEeecCCC
Q 019529 106 TIIMPKIKN 114 (339)
Q Consensus 106 tItlPK~~~ 114 (339)
.|+|+|..+
T Consensus 69 ~i~L~K~~~ 77 (85)
T cd06467 69 EITLEKRNE 77 (85)
T ss_pred EEEEEECCC
Confidence 999999875
No 32
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.18 E-value=0.0053 Score=49.00 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=65.8
Q ss_pred ceeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCCEEE
Q 019529 27 KSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGVLT 106 (339)
Q Consensus 27 ~vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenGVLt 106 (339)
++||+++++.+.|.+.+.|+.++++.|. ++ .+.|+|+..-. ++ ..|.-.+.|-..||++..+-....+-+.
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~---~~--~~~l~v~~~~~--~~--~~y~~~l~L~~~I~~~~s~~~v~~~kve 72 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVE---AN--STVLTIHIVFE--GN--KEFQLDIELWGVIDVEKSSVNMLPTKVE 72 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEE---ec--CCEEEEEEECC--CC--ceEEEEeeccceEChhHcEEEecCcEEE
Confidence 4899999999999999999999999999 53 57888765332 11 2477788999999999988888899999
Q ss_pred EEeecCCC
Q 019529 107 IIMPKIKN 114 (339)
Q Consensus 107 ItlPK~~~ 114 (339)
|+|.|..+
T Consensus 73 i~L~K~~~ 80 (87)
T cd06488 73 IKLRKAEP 80 (87)
T ss_pred EEEEeCCC
Confidence 99999864
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.16 E-value=0.0063 Score=48.21 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=64.0
Q ss_pred ceeEEEcCCEEEEEEEcCCCCC---CCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEE-ECCCCCCcCceeEEEeC
Q 019529 27 KSEWKHEDDASILLVYLPGFVK---EQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELY-KIPETCDINNINSVFQG 102 (339)
Q Consensus 27 ~vDI~Etdd~yiL~vDLPGfkK---EDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f-~LPe~VD~d~IkAsfen 102 (339)
.++|.++++.+.|.+.+|+... +++.|. .+ .+.|.|.+.- . ++ ..|.-.+ .|-..|+++..+..+.+
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~---~~--~~~l~v~~~~-~-~~--~~~~~~~~~L~~~I~~e~s~~~~~~ 73 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVE---FT--ERSFELKVHD-L-NG--KNYRFTINRLLKKIDPEKSSFKVKT 73 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEE---ec--CCEEEEEEEC-C-CC--cEEEEEehHhhCccCccccEEEEeC
Confidence 4799999999999999999887 999999 42 6789998732 1 11 2355555 48899999999999999
Q ss_pred CEEEEEeecCCC
Q 019529 103 GVLTIIMPKIKN 114 (339)
Q Consensus 103 GVLtItlPK~~~ 114 (339)
+-+.|+|.|..+
T Consensus 74 ~ki~i~L~K~~~ 85 (92)
T cd06468 74 DRIVITLAKKKE 85 (92)
T ss_pred CEEEEEEEeCCC
Confidence 999999999874
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=96.92 E-value=0.0086 Score=47.40 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=58.8
Q ss_pred eeEEEcCCEEEEEEEcC-CCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCC-EE
Q 019529 28 SEWKHEDDASILLVYLP-GFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGG-VL 105 (339)
Q Consensus 28 vDI~Etdd~yiL~vDLP-GfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenG-VL 105 (339)
|+|.++.+.+.|.+.+| |+.++||+|. +. .+.|.|... +. ..| -...|...||++.-.=.+++| .|
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~---~~--~~~l~v~~~----~~--~~~-~~g~L~~~I~~d~Stw~i~~~~~l 68 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIK---FL--PDHISIALK----DQ--APL-LEGKLYSSIDHESSTWIIKENKSL 68 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEE---Ee--cCEEEEEeC----CC--CeE-EeCcccCcccccCcEEEEeCCCEE
Confidence 57999999999999996 9999999999 42 578888642 11 112 244788999999887777777 79
Q ss_pred EEEeecCCC
Q 019529 106 TIIMPKIKN 114 (339)
Q Consensus 106 tItlPK~~~ 114 (339)
.|+|.|...
T Consensus 69 ~i~L~K~~~ 77 (85)
T cd06493 69 EVSLIKKDE 77 (85)
T ss_pred EEEEEECCC
Confidence 999999764
No 35
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.04 E-value=0.11 Score=43.65 Aligned_cols=79 Identities=13% Similarity=0.128 Sum_probs=62.4
Q ss_pred CceeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCCEE
Q 019529 26 PKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGVL 105 (339)
Q Consensus 26 P~vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenGVL 105 (339)
|.++|.+..+.+.|+++||+ ..|+.|. ++ .+.|.++|... .+. .|.-.+.|-..|+++.-+-+...--+
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~---l~--~~~l~f~~~~~-~g~---~y~~~l~l~~~I~pe~Sk~~v~~r~v 70 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVD---FE--KSKLTFSCLNG-DNV---KIYNEIELYDRVDPNDSKHKRTDRSI 70 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEE---Ee--cCEEEEEEECC-CCc---EEEEEEEeecccCcccCeEEeCCceE
Confidence 78999999999999999999 5788888 43 57899998432 222 35567788899999987777777778
Q ss_pred EEEeecCCCC
Q 019529 106 TIIMPKIKNN 115 (339)
Q Consensus 106 tItlPK~~~~ 115 (339)
.|.|.|....
T Consensus 71 e~~L~K~~~~ 80 (106)
T cd00237 71 LCCLRKGKEG 80 (106)
T ss_pred EEEEEeCCCC
Confidence 8899998643
No 36
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.81 E-value=0.052 Score=53.51 Aligned_cols=81 Identities=15% Similarity=0.196 Sum_probs=65.9
Q ss_pred CCceeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCCE
Q 019529 25 KPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGV 104 (339)
Q Consensus 25 ~P~vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenGV 104 (339)
.+.+||+++++.++|.|.+.|+.++++.|. + + .+.|.|+-... ++ ..|.-.+.|-..|+++..+.++..--
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~--~-~--~~~l~v~~~~~--~~--~~y~~~~~L~~~I~p~~s~~~v~~~K 226 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVD--F-G--EQILSVVIEVP--GE--DAYHLQPRLFGKIIPDKCKYEVLSTK 226 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEE--e-e--cCEEEEEEecC--CC--cceeecccccccccccccEEEEecce
Confidence 367999999999999999999999999999 4 2 57788875332 22 23555689999999999888888889
Q ss_pred EEEEeecCCC
Q 019529 105 LTIIMPKIKN 114 (339)
Q Consensus 105 LtItlPK~~~ 114 (339)
+.|+|.|..+
T Consensus 227 iei~l~K~~~ 236 (356)
T PLN03088 227 IEIRLAKAEP 236 (356)
T ss_pred EEEEEecCCC
Confidence 9999999764
No 37
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=95.71 E-value=0.078 Score=43.56 Aligned_cols=77 Identities=14% Similarity=0.256 Sum_probs=58.9
Q ss_pred CCceeEEEcCCEEEEEEEcC-CCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCC
Q 019529 25 KPKSEWKHEDDASILLVYLP-GFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGG 103 (339)
Q Consensus 25 ~P~vDI~Etdd~yiL~vDLP-GfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenG 103 (339)
.+.+.|.++.+.+.|++.|| |+++.||.|. +. .+.|.|.-. +. . -+. =.|...|+++.-.=.+++|
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~---i~--~~~l~V~~~----g~-~-~l~--G~L~~~I~~destWtled~ 71 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCK---LG--SRDISLAVK----GQ-E-VLK--GKLFDSVVADECTWTLEDR 71 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEE---EE--cCEEEEEEC----CE-E-EEc--CcccCccCcccCEEEEECC
Confidence 36799999999999999998 9999999999 42 577777631 11 0 111 1578889999888888876
Q ss_pred E-EEEEeecCCC
Q 019529 104 V-LTIIMPKIKN 114 (339)
Q Consensus 104 V-LtItlPK~~~ 114 (339)
- |.|+|.|...
T Consensus 72 k~l~I~L~K~~~ 83 (93)
T cd06494 72 KLIRIVLTKSNR 83 (93)
T ss_pred cEEEEEEEeCCC
Confidence 5 8999999753
No 38
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=95.31 E-value=0.37 Score=38.65 Aligned_cols=76 Identities=13% Similarity=0.189 Sum_probs=56.0
Q ss_pred eeEEEcCCEEEEEEEcCCCC--CCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEe--CC
Q 019529 28 SEWKHEDDASILLVYLPGFV--KEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQ--GG 103 (339)
Q Consensus 28 vDI~Etdd~yiL~vDLPGfk--KEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfe--nG 103 (339)
+||+.+++..+|.+...+.. ..++.+. ...+.|+|+-.-. + ..|...|.|-..|+.+. +.++. -|
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~-----~~~~~l~v~~~~~---~--~~~~~~~~L~~~I~~~~-~~~~~~~~~ 69 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVD-----DQQRELRVEIILG---D--KSYLLHLDLSNEVQWPC-EVRISTETG 69 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEE-----CCCCEEEEEEECC---C--ceEEEeeeccccCCCCc-EEEEcccCc
Confidence 58999999999999998644 4455455 3356788864321 1 23778888989998775 56665 78
Q ss_pred EEEEEeecCCC
Q 019529 104 VLTIIMPKIKN 114 (339)
Q Consensus 104 VLtItlPK~~~ 114 (339)
-+.|+|.|..+
T Consensus 70 KVEI~L~K~e~ 80 (87)
T cd06490 70 KIELVLKKKEP 80 (87)
T ss_pred eEEEEEEcCCC
Confidence 99999999775
No 39
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=94.60 E-value=0.11 Score=48.20 Aligned_cols=82 Identities=13% Similarity=0.242 Sum_probs=63.2
Q ss_pred CCceeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCCE
Q 019529 25 KPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGV 104 (339)
Q Consensus 25 ~P~vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenGV 104 (339)
.+++||+++....+|++..+|+.++|+.|. + . .++|.|.-+.+ ++ ..|+-...|-..|.++..+-+.----
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~---~-s-~~~l~~~~~~~--~g--~~~~l~~~L~~~I~pe~~s~k~~stK 73 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVE---I-S-ENTLSIVIQLP--SG--SEYNLQLKLYHEIIPEKSSFKVFSTK 73 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEE---e-e-cceEEEEEecC--Cc--hhhhhhHHhcccccccceeeEeeeee
Confidence 467999999999999999999999999999 4 2 57777775443 22 23555555888888888766666788
Q ss_pred EEEEeecCCCC
Q 019529 105 LTIIMPKIKNN 115 (339)
Q Consensus 105 LtItlPK~~~~ 115 (339)
+.|+|+|....
T Consensus 74 VEI~L~K~~~i 84 (196)
T KOG1309|consen 74 VEITLAKAEII 84 (196)
T ss_pred EEEEeccccch
Confidence 99999995543
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=88.54 E-value=4.6 Score=32.51 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=54.2
Q ss_pred eeEEEcCCEEEEEEEcC-C--CCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCC-
Q 019529 28 SEWKHEDDASILLVYLP-G--FVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGG- 103 (339)
Q Consensus 28 vDI~Etdd~yiL~vDLP-G--fkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenG- 103 (339)
|.|..+.+...|++.|| | +++.||.|. +. .+.|.|.-. ++.. -+. -.|...||++.-.=.++||
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~---i~--~~~l~v~~~----g~~~-~i~--G~L~~~V~~des~Wtled~~ 68 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVD---IQ--RKHLKVGLK----GQPP-IID--GELYNEVKVEESSWLIEDGK 68 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEE---Ee--cCEEEEEEC----CCce-EEe--CcccCcccccccEEEEeCCC
Confidence 45788899999999996 3 889999999 42 567777532 1100 122 2567888888877778886
Q ss_pred EEEEEeecCCC
Q 019529 104 VLTIIMPKIKN 114 (339)
Q Consensus 104 VLtItlPK~~~ 114 (339)
.|.|+|-|...
T Consensus 69 ~l~i~L~K~~~ 79 (87)
T cd06492 69 VVTVNLEKINK 79 (87)
T ss_pred EEEEEEEECCC
Confidence 89999999753
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=84.98 E-value=11 Score=31.68 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=56.1
Q ss_pred CCceeEEEcCCEEEEEEEcC-C-CCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeC
Q 019529 25 KPKSEWKHEDDASILLVYLP-G-FVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQG 102 (339)
Q Consensus 25 ~P~vDI~Etdd~yiL~vDLP-G-fkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfen 102 (339)
.+.|.|..+-+.+.|++.|| | .+..||.|. + . .+.|.|.-.. ..+.. --+.- .|+..|+.+.-.=.++|
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~---i-~-~~~l~v~~~~-~~~~~-~~i~G--~L~~~V~~des~Wtled 74 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVD---L-Q-SSSIRVSVRD-GGGEK-VLMEG--EFTHKINTENSLWSLEP 74 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEE---E-E-cCEEEEEEec-CCCCc-eEEeC--cccCcccCccceEEEeC
Confidence 46789999999999999999 6 467899999 3 2 4667766421 00000 01111 57788888877777888
Q ss_pred CE-EEEEeecCC
Q 019529 103 GV-LTIIMPKIK 113 (339)
Q Consensus 103 GV-LtItlPK~~ 113 (339)
|- |.|+|-|..
T Consensus 75 ~~~l~I~L~K~~ 86 (102)
T cd06495 75 GKCVLLSLSKCS 86 (102)
T ss_pred CCEEEEEEEECC
Confidence 54 899999974
No 42
>PF14913 DPCD: DPCD protein family
Probab=70.36 E-value=23 Score=33.31 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=60.1
Q ss_pred CCceeEEEcCCEEEEEE-EcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCC------CCcCcee
Q 019529 25 KPKSEWKHEDDASILLV-YLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPET------CDINNIN 97 (339)
Q Consensus 25 ~P~vDI~Etdd~yiL~v-DLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~------VD~d~Ik 97 (339)
.|.+--.++..+|.-++ +|| +.++--.|. +|.+.+.|+|+-.. ..|.++|.+|+- .+.+.++
T Consensus 86 nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVt---vd~~~r~ivvRTtN-------KKYyKk~~IPDl~R~~l~l~~~~ls 154 (194)
T PF14913_consen 86 NPIFVRRDTKTSFQWRIRNLP-YPKDVYSVT---VDEDERCIVVRTTN-------KKYYKKFSIPDLDRCGLPLEQSALS 154 (194)
T ss_pred CCEEEEEcCccceEEEEccCC-CCccceEEE---EcCCCcEEEEECcC-------ccceeEecCCcHHhhCCCcchhhce
Confidence 36666677888999988 677 888988998 66666788887432 468899999952 3677788
Q ss_pred EEEeCCEEEEEeecCC
Q 019529 98 SVFQGGVLTIIMPKIK 113 (339)
Q Consensus 98 AsfenGVLtItlPK~~ 113 (339)
-.+.|..|.|+-.|..
T Consensus 155 ~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 155 FAHQNNTLIISYKKPK 170 (194)
T ss_pred eeeecCeEEEEecCcH
Confidence 8888999999987643
No 43
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=69.51 E-value=15 Score=29.55 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=39.3
Q ss_pred EEEEEEcCCCCCCCe-----------------EEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEE-CCCCCCcCceeE
Q 019529 37 SILLVYLPGFVKEQI-----------------KVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYK-IPETCDINNINS 98 (339)
Q Consensus 37 yiL~vDLPGfkKEDI-----------------kV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~-LPe~VD~d~IkA 98 (339)
|.-.+++||.++++| .|. +.|...+.|...|.- |--|...+. |...--.=.|.+
T Consensus 1 f~~~i~vpg~sk~~ly~~~~~W~~~~~~~~~s~I~--~~dke~g~I~~~g~~------~~~f~~~~ls~~~~~i~y~l~i 72 (91)
T PF14730_consen 1 FTKVIEVPGMSKDQLYDRAKKWLAKNFKSANSVIQ--YSDKEEGTIIAKGEE------WLVFSSSFLSLDRTRINYTLII 72 (91)
T ss_pred CcEEEEcCCCCHHHHHHHHHHHHHHhcccccceEE--EEcCCCCEEEEEEEE------EEEEccccccccceEEEEEEEE
Confidence 345677788777754 455 556666778877754 333443221 222111224677
Q ss_pred EEeCCEEEEEeec
Q 019529 99 VFQGGVLTIIMPK 111 (339)
Q Consensus 99 sfenGVLtItlPK 111 (339)
.+.||-++++|-.
T Consensus 73 ~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 73 DCKDGKYRLTITN 85 (91)
T ss_pred EEECCEEEEEEEE
Confidence 7889999988754
No 44
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=67.48 E-value=21 Score=33.31 Aligned_cols=81 Identities=10% Similarity=0.109 Sum_probs=60.8
Q ss_pred CCCceeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCC
Q 019529 24 FKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGG 103 (339)
Q Consensus 24 f~P~vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenG 103 (339)
..|.+-|.+..+-+.|++.|+.-+-..|.+. ...|+++|..... ...+...|.|=..||+++.+-+-. +
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ved~~d~~v~~e-------~~~l~fs~k~~~d---~~~~~~~ief~~eIdpe~sk~k~~-~ 74 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVEDAKDVHVNLE-------PSKLTFSCKSGAD---NHKYENEIEFFDEIDPEKSKHKRT-S 74 (180)
T ss_pred cCCcchhhhhcCeEEEEEEeccCccceeecc-------ccEEEEEeccCCC---ceeeEEeeehhhhcCHhhcccccc-c
Confidence 4578999999999999999996655544444 5689999976422 356777899999999998877766 6
Q ss_pred EEEEEeecCCCC
Q 019529 104 VLTIIMPKIKNN 115 (339)
Q Consensus 104 VLtItlPK~~~~ 115 (339)
.+...++++...
T Consensus 75 r~if~i~~K~e~ 86 (180)
T KOG3158|consen 75 RSIFCILRKKEL 86 (180)
T ss_pred eEEEEEEEcccc
Confidence 666666665544
No 45
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=59.19 E-value=42 Score=33.28 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=67.9
Q ss_pred CceeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCCEE
Q 019529 26 PKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGVL 105 (339)
Q Consensus 26 P~vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenGVL 105 (339)
-+.||..++..++|.|+.-|..++.-.|. .+ +.+|.|.=.-. .++ .+|...+.|=.-|++++..+.+-.--.
T Consensus 215 cR~Dwhqt~~~Vti~VY~k~~lpe~s~ie---an--~~~l~V~ivf~-~gn--a~fd~d~kLwgvvnve~s~v~m~~tkV 286 (320)
T KOG1667|consen 215 CRHDWHQTNGFVTINVYAKGALPETSNIE---AN--GTTLHVSIVFG-FGN--ASFDLDYKLWGVVNVEESSVVMGETKV 286 (320)
T ss_pred chhhhhhcCCeEEEEEEeccCCcccceee---eC--CeEEEEEEEec-CCC--ceeeccceeeeeechhhceEEeecceE
Confidence 36899999999999999999999988888 42 66777764332 232 578888888888999999999999999
Q ss_pred EEEeecCCCCC
Q 019529 106 TIIMPKIKNNA 116 (339)
Q Consensus 106 tItlPK~~~~~ 116 (339)
.|+|+|..+-.
T Consensus 287 EIsl~k~ep~s 297 (320)
T KOG1667|consen 287 EISLKKAEPGS 297 (320)
T ss_pred EEEEeccCCCC
Confidence 99999998764
No 46
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=55.88 E-value=18 Score=29.37 Aligned_cols=35 Identities=3% Similarity=0.086 Sum_probs=30.0
Q ss_pred eEEEEEEECCCCCCcCceeEEEeCCEEEEEeecCCC
Q 019529 79 NQFSELYKIPETCDINNINSVFQGGVLTIIMPKIKN 114 (339)
Q Consensus 79 g~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK~~~ 114 (339)
..|.-...|| +++.+.|+-++.||.|+|+.-+...
T Consensus 8 ~~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 8 SNVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 4677788899 7999999999999999999886543
No 47
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=55.46 E-value=22 Score=28.21 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=28.6
Q ss_pred eEEEEEEECCCCCCcCceeEEEeCCEEEEEeec
Q 019529 79 NQFSELYKIPETCDINNINSVFQGGVLTIIMPK 111 (339)
Q Consensus 79 g~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK 111 (339)
..|.-.+.|| +++.+.|+-.+.+|.|+|+.-+
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~ 38 (83)
T cd06478 7 DRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKH 38 (83)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 4688899999 7999999999999999999853
No 48
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=53.03 E-value=22 Score=28.66 Aligned_cols=34 Identities=18% Similarity=0.019 Sum_probs=29.6
Q ss_pred eEEEEEEECCCCCCcCceeEEEeCCEEEEEeecCC
Q 019529 79 NQFSELYKIPETCDINNINSVFQGGVLTIIMPKIK 113 (339)
Q Consensus 79 g~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK~~ 113 (339)
..|.-.+.|| +++++.|+-.+.+|.|+|+.-+..
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 7 PMFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred ceEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 4688889999 599999999999999999987544
No 49
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=51.95 E-value=7.4 Score=38.91 Aligned_cols=84 Identities=10% Similarity=0.055 Sum_probs=64.1
Q ss_pred CCceeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCCE
Q 019529 25 KPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGV 104 (339)
Q Consensus 25 ~P~vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenGV 104 (339)
.-.+||.++.....|.+.-|-+..++|++. ++ +|+|.|+-+-+. ++ ..|.-.+.|-..|+++...-+.---+
T Consensus 176 ~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~---~e--~NTL~I~~q~~~-~~--~~~~~~~~Ly~ev~P~~~s~k~fsK~ 247 (368)
T COG5091 176 EIAYDFSETSDTAIIFIYRPPVGDEQVSPV---LE--GNTLSISYQPRR-LR--LWNDITISLYKEVYPDIRSIKSFSKR 247 (368)
T ss_pred eeeeeccccceeEEEEEecCCCCcccccee---ec--CCcceeeeeccc-cc--hHHHhhhhhhhhcCcchhhhhhcchh
Confidence 345788999999999999999999999999 63 889999865322 11 23455677888899987766555588
Q ss_pred EEEEeecCCCCC
Q 019529 105 LTIIMPKIKNNA 116 (339)
Q Consensus 105 LtItlPK~~~~~ 116 (339)
+.|+|-|....+
T Consensus 248 ~e~~l~KV~~v~ 259 (368)
T COG5091 248 VEVHLRKVEMVR 259 (368)
T ss_pred heehhhhhhhhh
Confidence 999998887654
No 50
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=51.61 E-value=24 Score=28.20 Aligned_cols=32 Identities=6% Similarity=0.113 Sum_probs=28.3
Q ss_pred eEEEEEEECCCCCCcCceeEEEeCCEEEEEeec
Q 019529 79 NQFSELYKIPETCDINNINSVFQGGVLTIIMPK 111 (339)
Q Consensus 79 g~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK 111 (339)
..|.-.+.|| +++++.|+-.+.+|+|+|+.-+
T Consensus 10 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 41 (86)
T cd06497 10 DKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKH 41 (86)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 4688889999 6999999999999999999754
No 51
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=50.86 E-value=24 Score=28.21 Aligned_cols=32 Identities=6% Similarity=0.141 Sum_probs=28.4
Q ss_pred eEEEEEEECCCCCCcCceeEEEeCCEEEEEeec
Q 019529 79 NQFSELYKIPETCDINNINSVFQGGVLTIIMPK 111 (339)
Q Consensus 79 g~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK 111 (339)
..|.-.+.|| ++.++.|+..+.||.|+|+.-+
T Consensus 7 d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 38 (83)
T cd06476 7 DKYQVFLDVC-HFTPDEITVRTVDNLLEVSARH 38 (83)
T ss_pred CeEEEEEEcC-CCCHHHeEEEEECCEEEEEEEE
Confidence 4688889999 5899999999999999999865
No 52
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=49.74 E-value=29 Score=27.42 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=29.4
Q ss_pred eEEEEEEECCCCCCcCceeEEEeCCEEEEEeecCC
Q 019529 79 NQFSELYKIPETCDINNINSVFQGGVLTIIMPKIK 113 (339)
Q Consensus 79 g~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK~~ 113 (339)
..|.-.+.|| +++.+.|+-.+.++.|+|+.-+..
T Consensus 10 ~~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~ 43 (93)
T cd06471 10 DEYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDE 43 (93)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 3677888999 699999999999999999987654
No 53
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=47.13 E-value=39 Score=26.79 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=28.0
Q ss_pred eEEEEEEECCCCCCcCceeEEEeCCEEEEEeecC
Q 019529 79 NQFSELYKIPETCDINNINSVFQGGVLTIIMPKI 112 (339)
Q Consensus 79 g~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK~ 112 (339)
..|.-.+.|| +++.++|+-.+.++.|.|+.-+.
T Consensus 7 ~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 7 DEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 4688889999 79999999999999999998877
No 54
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=45.33 E-value=41 Score=26.81 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=30.0
Q ss_pred eEEEEEEECCCCCCcCceeEEEeCCEEEEEeecCCC
Q 019529 79 NQFSELYKIPETCDINNINSVFQGGVLTIIMPKIKN 114 (339)
Q Consensus 79 g~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK~~~ 114 (339)
..|.-.+.|| +++.+.|+-.+.+|.|+|+..+...
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~ 45 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADE 45 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEccc
Confidence 4688889999 5999999999999999999776543
No 55
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=44.16 E-value=37 Score=27.16 Aligned_cols=32 Identities=6% Similarity=0.092 Sum_probs=28.3
Q ss_pred eEEEEEEECCCCCCcCceeEEEeCCEEEEEeec
Q 019529 79 NQFSELYKIPETCDINNINSVFQGGVLTIIMPK 111 (339)
Q Consensus 79 g~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK 111 (339)
..|.-.+.|| +++++.|+-.+.+|.|+|+.-+
T Consensus 8 ~~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger 39 (81)
T cd06479 8 DTYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEK 39 (81)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 3688889999 7999999999999999998765
No 56
>PRK10743 heat shock protein IbpA; Provisional
Probab=43.32 E-value=34 Score=29.96 Aligned_cols=32 Identities=6% Similarity=0.081 Sum_probs=27.4
Q ss_pred EEEEEEECCCCCCcCceeEEEeCCEEEEEeecC
Q 019529 80 QFSELYKIPETCDINNINSVFQGGVLTIIMPKI 112 (339)
Q Consensus 80 ~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK~ 112 (339)
.|.-...|| +++.+.|.-.++||+|+|+.-+.
T Consensus 46 ~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~ 77 (137)
T PRK10743 46 HYRIAIAVA-GFAESELEITAQDNLLVVKGAHA 77 (137)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEC
Confidence 567777899 79999999999999999998643
No 57
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=41.67 E-value=43 Score=26.73 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=27.7
Q ss_pred eEEEEEEECCCCCCcCceeEEEeCCEEEEEee
Q 019529 79 NQFSELYKIPETCDINNINSVFQGGVLTIIMP 110 (339)
Q Consensus 79 g~F~R~f~LPe~VD~d~IkAsfenGVLtItlP 110 (339)
..|.-.+.|| +++++.|+-.+.+|.|+|+.-
T Consensus 7 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~ 37 (84)
T cd06498 7 DKFSVNLDVK-HFSPEELKVKVLGDFIEIHGK 37 (84)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEE
Confidence 4688889998 699999999999999999984
No 58
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=41.06 E-value=46 Score=26.62 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=28.5
Q ss_pred eEEEEEEECCCCCCcCceeEEEeCCEEEEEeec
Q 019529 79 NQFSELYKIPETCDINNINSVFQGGVLTIIMPK 111 (339)
Q Consensus 79 g~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK 111 (339)
..|.-.+.|| +++.+.|.-.+.++.|+|+.-+
T Consensus 10 ~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~ 41 (86)
T cd06475 10 DRWKVSLDVN-HFAPEELVVKTKDGVVEITGKH 41 (86)
T ss_pred CeEEEEEECC-CCCHHHEEEEEECCEEEEEEEE
Confidence 4688889999 6999999999999999999864
No 59
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=39.33 E-value=18 Score=35.19 Aligned_cols=27 Identities=33% Similarity=0.210 Sum_probs=20.2
Q ss_pred hhhhhchhhhHHHhhccceEEEEeccC
Q 019529 310 QLLVNMGTAVLVIVGLGAYLSYTITSF 336 (339)
Q Consensus 310 ~~~~n~g~avlvi~algayv~y~~~~~ 336 (339)
+++|=+..|+|||+.|.||+.+|-++.
T Consensus 274 PIaVG~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 274 PIAVGAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred HHHHHHHHHHHHHHHHHhheeEecccc
Confidence 444444457799999999999987764
No 60
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=37.66 E-value=2.5e+02 Score=23.71 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=45.1
Q ss_pred ceeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEEeecC--CCce------eEEEEEEECCCCCCcCceeE
Q 019529 27 KSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA--GGRW------NQFSELYKIPETCDINNINS 98 (339)
Q Consensus 27 ~vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGER~~e--~~~~------g~F~R~f~LPe~VD~d~IkA 98 (339)
.+.|...+ ...+.+...| ..+.+. .+ +++|.|....... ...| ....-.+.||.+...++|+.
T Consensus 67 ~V~I~~~~-~~~i~v~~~~---k~~~~~---~~--~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i 137 (166)
T PF13349_consen 67 DVEIKPSD-DDKIKVEYNG---KKPEIS---VE--GGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDI 137 (166)
T ss_pred eEEEEEcC-CccEEEEEcC---cEEEEE---Ec--CCEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEE
Confidence 35555533 3444555522 156666 43 8999999872211 1111 12344678999988889999
Q ss_pred EEeCCEEEEE
Q 019529 99 VFQGGVLTII 108 (339)
Q Consensus 99 sfenGVLtIt 108 (339)
...+|=++|.
T Consensus 138 ~~~~G~i~i~ 147 (166)
T PF13349_consen 138 KTSSGDITIE 147 (166)
T ss_pred EeccccEEEE
Confidence 9988988875
No 61
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=37.46 E-value=60 Score=25.71 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=27.5
Q ss_pred eEEEEEEECCCCCCcCceeEEEeCC-EEEEEeecC
Q 019529 79 NQFSELYKIPETCDINNINSVFQGG-VLTIIMPKI 112 (339)
Q Consensus 79 g~F~R~f~LPe~VD~d~IkAsfenG-VLtItlPK~ 112 (339)
..|.-.+.||. ++.+.|.-.+.+| +|+|+.-+.
T Consensus 9 ~~~~i~~~lPG-v~~edi~i~v~~~~~L~I~g~~~ 42 (92)
T cd06472 9 EAHVFKADVPG-VKKEDVKVEVEDGRVLRISGERK 42 (92)
T ss_pred CeEEEEEECCC-CChHhEEEEEeCCCEEEEEEEec
Confidence 46788889995 8999999999865 999998654
No 62
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=36.15 E-value=64 Score=25.10 Aligned_cols=34 Identities=6% Similarity=0.067 Sum_probs=30.3
Q ss_pred eEEEEEEECCCCCCcCceeEEEeCCEEEEEeecCC
Q 019529 79 NQFSELYKIPETCDINNINSVFQGGVLTIIMPKIK 113 (339)
Q Consensus 79 g~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK~~ 113 (339)
..|.-.+.|| ++..+.|+-.++++.|+|+.-+..
T Consensus 7 ~~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~ 40 (83)
T cd06526 7 EKFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEE 40 (83)
T ss_pred eeEEEEEECC-CCCHHHcEEEEECCEEEEEEEEee
Confidence 4789999999 599999999999999999987654
No 63
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=35.68 E-value=63 Score=25.87 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=28.8
Q ss_pred eEEEEEEECCCCCCcCceeEEEeCCEEEEEeecC
Q 019529 79 NQFSELYKIPETCDINNINSVFQGGVLTIIMPKI 112 (339)
Q Consensus 79 g~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK~ 112 (339)
..|.-.+.|| ++.++.|+-.++++.|+|+.-+.
T Consensus 7 d~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (87)
T cd06481 7 EGFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKRE 39 (87)
T ss_pred ceEEEEEECC-CCChHHeEEEEECCEEEEEEEEe
Confidence 4688889998 58999999999999999998653
No 64
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=32.54 E-value=61 Score=28.73 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=26.9
Q ss_pred EEEEEEECCCCCCcCceeEEEeCCEEEEEeecC
Q 019529 80 QFSELYKIPETCDINNINSVFQGGVLTIIMPKI 112 (339)
Q Consensus 80 ~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK~ 112 (339)
.|.-...|| +++.+.|.-.+++|+|+|+.-+.
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~ 75 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQLEGTRLTVKGTPE 75 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 466667788 79999999999999999998653
No 65
>PF09049 SNN_transmemb: Stannin transmembrane; InterPro: IPR015135 This region consists of a single highly hydrophobic transmembrane helix that transverses the lipid bilayer at a 20 degree angle with respect to the membrane normal. It contains a conserved cysteine residue (Cys32) that, together with Cys34 found in the stannin unstructured linker domain, constitutes the putative trimethyltin-binding site that resides at the end of the transmembrane domain close to the lipid/solvent interface []. ; PDB: 1ZZA_A.
Probab=30.24 E-value=15 Score=25.21 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=14.1
Q ss_pred hhhchhhhHHHhhccceE
Q 019529 312 LVNMGTAVLVIVGLGAYL 329 (339)
Q Consensus 312 ~~n~g~avlvi~algayv 329 (339)
|+.+++.+..|+|||+.+
T Consensus 12 vvti~viliavaalg~li 29 (33)
T PF09049_consen 12 VVTIIVILIAVAALGALI 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EEEehhHHHHHHHHhhhh
Confidence 567788888889999753
No 66
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=29.89 E-value=96 Score=25.90 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=32.2
Q ss_pred hhhhcccC-----CCceeEEEcCCEEEEEEEcCCC-----CCCCeEEEeeEEeCCCCEEEEE
Q 019529 17 MRRTYENF-----KPKSEWKHEDDASILLVYLPGF-----VKEQIKVMNTYVDNITLSLKVE 68 (339)
Q Consensus 17 ~~rv~e~f-----~P~vDI~Etdd~yiL~vDLPGf-----kKEDIkV~is~VD~~~~~L~Is 68 (339)
++++...| .|.+.|.++++.|.|.+--+.. .++...|. .. ++.|.|.
T Consensus 12 l~~~~G~W~Sv~~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~--~~---~g~~fI~ 68 (95)
T PF12992_consen 12 LDKICGEWESVNGKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQ--EE---DGNLFIE 68 (95)
T ss_pred hheeEEEeEccCCCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEE--Ee---CCEEEEe
Confidence 55555554 4999999999999999866654 55666566 32 4555554
No 67
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=28.43 E-value=1.2e+02 Score=22.68 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=31.0
Q ss_pred eEEEEEEECCCCCCcCceeEEEeCCEEEEEeecCCCC
Q 019529 79 NQFSELYKIPETCDINNINSVFQGGVLTIIMPKIKNN 115 (339)
Q Consensus 79 g~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK~~~~ 115 (339)
..|.-.+.||. ++.+.|.-.+.++.|.|+.-+....
T Consensus 7 ~~~~i~~~lpg-~~~~~i~V~v~~~~l~I~g~~~~~~ 42 (88)
T cd06464 7 DAYVVEADLPG-FKKEDIKVEVEDGVLTISGEREEEE 42 (88)
T ss_pred CEEEEEEECCC-CCHHHeEEEEECCEEEEEEEEeccc
Confidence 46888899996 9999999999999999998776544
No 68
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=25.46 E-value=1.1e+02 Score=26.36 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=27.9
Q ss_pred EEEEEEECCCCCCcCceeEEEeCCEEEEEeecCC
Q 019529 80 QFSELYKIPETCDINNINSVFQGGVLTIIMPKIK 113 (339)
Q Consensus 80 ~F~R~f~LPe~VD~d~IkAsfenGVLtItlPK~~ 113 (339)
.|.-.+.|| +++.+.|.-.+.++.|+|+.-+..
T Consensus 51 ~~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 51 EYRITAELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 455566788 699999999999999999988775
No 69
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.35 E-value=1.4e+02 Score=25.37 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=25.9
Q ss_pred eeEEEcCCEEEEEEEcCCCCCCCeEEEeeEEeCCCCEEEEEEE
Q 019529 28 SEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGR 70 (339)
Q Consensus 28 vDI~Etdd~yiL~vDLPGfkKEDIkV~is~VD~~~~~L~IsGE 70 (339)
+++.+++| .|....||+++ |.|. .+ ++.|.|.+-
T Consensus 26 ~~v~~eGD--~ivas~pgis~--ieik---~E--~kkL~v~t~ 59 (96)
T COG4004 26 WTVSEEGD--RIVASSPGISR--IEIK---PE--NKKLLVNTT 59 (96)
T ss_pred eeEeeccc--EEEEecCCceE--EEEe---cc--cceEEEecc
Confidence 88888888 78889999986 4444 32 688999883
No 70
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=24.80 E-value=1.3e+02 Score=22.92 Aligned_cols=31 Identities=10% Similarity=0.151 Sum_probs=26.7
Q ss_pred EEEEEEECCCCCCcCceeEEEeCCEEEEEee
Q 019529 80 QFSELYKIPETCDINNINSVFQGGVLTIIMP 110 (339)
Q Consensus 80 ~F~R~f~LPe~VD~d~IkAsfenGVLtItlP 110 (339)
...-.|.||.+++.+.|...|.+.-|+|++.
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 3555678999999999999999999999986
No 71
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=24.05 E-value=69 Score=26.95 Aligned_cols=17 Identities=41% Similarity=0.608 Sum_probs=14.9
Q ss_pred CceeEEEeCCEEEEEee
Q 019529 94 NNINSVFQGGVLTIIMP 110 (339)
Q Consensus 94 d~IkAsfenGVLtItlP 110 (339)
..|.+.+.+|||+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 45778889999999998
No 72
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=23.78 E-value=3.5e+02 Score=25.35 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=56.3
Q ss_pred cCCCceeEEEcCCEEEEEEEcC-CC-CCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEE
Q 019529 23 NFKPKSEWKHEDDASILLVYLP-GF-VKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVF 100 (339)
Q Consensus 23 ~f~P~vDI~Etdd~yiL~vDLP-Gf-kKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsf 100 (339)
.-.+.+.|..+=..+.|.|-|| |+ +..+|.|. + . .+.|.|.-.... ---.=.|...|+++...=.+
T Consensus 16 ~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~---I-q-~~hI~V~~kg~~-------~ildG~L~~~vk~des~Wti 83 (179)
T KOG2265|consen 16 ADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCS---I-Q-SKHIKVGLKGQP-------PILDGELSHSVKVDESTWTI 83 (179)
T ss_pred ccccceeeeeehhheEEEeecCCCCcccceEEEE---e-e-eeEEEEecCCCC-------ceecCccccccccccceEEe
Confidence 3457899999988999998886 88 88899999 4 2 466666522110 11111356778888888889
Q ss_pred eCCEEEEEeecCCC
Q 019529 101 QGGVLTIIMPKIKN 114 (339)
Q Consensus 101 enGVLtItlPK~~~ 114 (339)
+||.+.|.+=++..
T Consensus 84 Ed~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 84 EDGKMIVILLKKSN 97 (179)
T ss_pred cCCEEEEEEeeccc
Confidence 99998888877665
No 73
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=23.66 E-value=60 Score=28.86 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=33.1
Q ss_pred ccchhhhhhhccc--ccchhhhhhhchhhhHHHhhccceEEEEeccCCCC
Q 019529 292 DKKHESAFASEGL--IEGKQQLLVNMGTAVLVIVGLGAYLSYTITSFGKV 339 (339)
Q Consensus 292 ~~~~~~~~~~eg~--~~~e~~~~~n~g~avlvi~algayv~y~~~~~~~~ 339 (339)
..|+..=..+-|. |+==+ .+.-.|++||++-..+--|+|+|.+-|.+
T Consensus 31 ~vsE~~lt~atgg~e~s~Yr-ci~pfG~vili~GvvvT~vays~n~~~si 79 (129)
T PF15099_consen 31 SVSESQLTAATGGAEWSCYR-CIMPFGVVILIAGVVVTAVAYSFNSHGSI 79 (129)
T ss_pred cccHHHHhccCCCCCceEEE-EEEEehHHHHHHhhHhheeeEeecCCcch
Confidence 3455444445333 32222 88889999999988888999999988764
No 74
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=23.64 E-value=56 Score=27.28 Aligned_cols=15 Identities=33% Similarity=0.713 Sum_probs=12.9
Q ss_pred eEEEeCCEEEEEeec
Q 019529 97 NSVFQGGVLTIIMPK 111 (339)
Q Consensus 97 kAsfenGVLtItlPK 111 (339)
.+.+.+|||+|+++.
T Consensus 30 D~e~~~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEYSSGVLTLELPS 44 (97)
T ss_pred ccccCCCEEEEEECC
Confidence 677899999999964
No 75
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=23.38 E-value=3e+02 Score=25.41 Aligned_cols=45 Identities=18% Similarity=0.370 Sum_probs=33.2
Q ss_pred CCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCCEEEEEee
Q 019529 48 KEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGVLTIIMP 110 (339)
Q Consensus 48 KEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenGVLtItlP 110 (339)
|++++|. ++ ++.|+|+|.+ |...+.|.-| .|...++||-|.|+..
T Consensus 13 P~~V~v~---i~--~~~v~VkGp~-------G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVE---IE--GLVVTVKGPK-------GELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEE---EE--CCEEEEECCC-------eEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 6788888 54 6899999975 7777776533 3555678898888855
No 76
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=23.29 E-value=3.2e+02 Score=24.89 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=32.5
Q ss_pred CCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCCEEEEEee
Q 019529 48 KEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGVLTIIMP 110 (339)
Q Consensus 48 KEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenGVLtItlP 110 (339)
|++++|. ++ ++.|+|+|.+ |...+.|.-| .|....+++-|.|+.+
T Consensus 7 P~~V~v~---i~--~~~i~vkGp~-------G~L~~~~~~~------~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVT---IE--GNIVTVKGPK-------GEVTRELWYP------GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEE---Ee--CCEEEEECCC-------eEEEEEEeCC------cEEEEEeCCEEEEEeC
Confidence 5778888 54 7899999975 7777766422 3455678898888854
No 77
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=22.56 E-value=1.5e+02 Score=27.06 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=30.2
Q ss_pred EcC-CCCCCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCC
Q 019529 42 YLP-GFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPE 89 (339)
Q Consensus 42 DLP-GfkKEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe 89 (339)
-|| ||+++.|.=. + .++|.|+|.+.+..... .+.|.|++..
T Consensus 122 ~LP~~vdp~~V~S~---L-S~dGvLtI~ap~~~~~~---~~er~ipI~~ 163 (173)
T KOG3591|consen 122 LLPEDVDPTSVTST---L-SSDGVLTIEAPKPPPKQ---DNERSIPIEQ 163 (173)
T ss_pred cCCCCCChhheEEe---e-CCCceEEEEccCCCCcC---ccceEEeEee
Confidence 377 9999999988 6 56999999998765321 1667776643
No 78
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=22.52 E-value=89 Score=26.28 Aligned_cols=18 Identities=44% Similarity=0.672 Sum_probs=15.3
Q ss_pred CceeEEEeCCEEEEEeec
Q 019529 94 NNINSVFQGGVLTIIMPK 111 (339)
Q Consensus 94 d~IkAsfenGVLtItlPK 111 (339)
..+.+.+.+|||+|++|.
T Consensus 30 ~d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPD 47 (109)
T ss_dssp STEEEEEETTEEEEEETT
T ss_pred CceEEEccCCEEEEEECC
Confidence 358899999999999964
No 79
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=22.37 E-value=3.1e+02 Score=24.90 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=32.6
Q ss_pred CCCeEEEeeEEeCCCCEEEEEEEeecCCCceeEEEEEEECCCCCCcCceeEEEeCCEEEEEee
Q 019529 48 KEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGVLTIIMP 110 (339)
Q Consensus 48 KEDIkV~is~VD~~~~~L~IsGER~~e~~~~g~F~R~f~LPe~VD~d~IkAsfenGVLtItlP 110 (339)
|++|.|. ++ ++.|+|+|.+ |...+.| |.. |...++++.|.|+..
T Consensus 11 P~~V~v~---~~--~~~v~v~Gp~-------G~l~~~l--~~~-----i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVT---ID--GNVVTVKGPK-------GELSRTL--HPG-----VTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEE---Ee--CCEEEEEcCC-------eEEEEEc--CCC-----eEEEEECCEEEEEec
Confidence 5788888 54 7899999975 7777777 443 445668888888865
No 80
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=22.12 E-value=52 Score=24.46 Aligned_cols=22 Identities=23% Similarity=0.591 Sum_probs=14.5
Q ss_pred hhhhchhhhHHHhhccceEEEE
Q 019529 311 LLVNMGTAVLVIVGLGAYLSYT 332 (339)
Q Consensus 311 ~~~n~g~avlvi~algayv~y~ 332 (339)
+.+-|++.++-|+|.|.|.+|-
T Consensus 10 ~~i~i~~lL~~~TgyaiYtaFG 31 (46)
T PRK13183 10 LAITILAILLALTGFGIYTAFG 31 (46)
T ss_pred HHHHHHHHHHHHhhheeeeccC
Confidence 3445666677777888877653
No 81
>PF13633 N_methyl_3: Prokaryotic N-terminal methylation site
Probab=21.32 E-value=45 Score=21.26 Aligned_cols=14 Identities=50% Similarity=0.850 Sum_probs=10.4
Q ss_pred chhhhHHHhhccce
Q 019529 315 MGTAVLVIVGLGAY 328 (339)
Q Consensus 315 ~g~avlvi~algay 328 (339)
|-.+|+.|.++|+|
T Consensus 8 Ia~~i~~i~~~g~~ 21 (22)
T PF13633_consen 8 IAIAILGILALGAY 21 (22)
T ss_pred HHHHHHHHHHHhhC
Confidence 34577888888887
No 82
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=21.30 E-value=46 Score=30.33 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=19.6
Q ss_pred CCCCCcCceeEEEeCCEEEEEeecCCCC
Q 019529 88 PETCDINNINSVFQGGVLTIIMPKIKNN 115 (339)
Q Consensus 88 Pe~VD~d~IkAsfenGVLtItlPK~~~~ 115 (339)
-+.++.+.-.+.|.||||||.|+ ..+.
T Consensus 66 ~e~~~~~~~Dv~y~~GVLTl~lg-~~GT 92 (156)
T KOG3413|consen 66 AEEVPGEGFDVDYADGVLTLKLG-SVGT 92 (156)
T ss_pred HhhcCccccccccccceEEEEec-Ccee
Confidence 34454555668999999999999 4444
No 83
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=21.14 E-value=75 Score=26.85 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=14.3
Q ss_pred eeEEEeCCEEEEEeec
Q 019529 96 INSVFQGGVLTIIMPK 111 (339)
Q Consensus 96 IkAsfenGVLtItlPK 111 (339)
+.+.+.+|||+|+++.
T Consensus 29 ~D~e~~~gVLti~f~~ 44 (105)
T PRK00446 29 IDCERNGGVLTLTFEN 44 (105)
T ss_pred eeeeccCCEEEEEECC
Confidence 7788999999999985
No 84
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=20.72 E-value=77 Score=26.61 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=14.2
Q ss_pred eeEEEeCCEEEEEeec
Q 019529 96 INSVFQGGVLTIIMPK 111 (339)
Q Consensus 96 IkAsfenGVLtItlPK 111 (339)
|.+.+.+|||+|+++.
T Consensus 27 ~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 27 IDCERAGGVLTLTFEN 42 (102)
T ss_pred eeeecCCCEEEEEECC
Confidence 7788899999999984
No 85
>CHL00020 psbN photosystem II protein N
Probab=20.22 E-value=61 Score=23.78 Aligned_cols=21 Identities=10% Similarity=0.327 Sum_probs=14.0
Q ss_pred hhhchhhhHHHhhccceEEEE
Q 019529 312 LVNMGTAVLVIVGLGAYLSYT 332 (339)
Q Consensus 312 ~~n~g~avlvi~algayv~y~ 332 (339)
.+-|++.++-|++.|.|.+|-
T Consensus 8 ~i~i~~ll~~~Tgy~iYtaFG 28 (43)
T CHL00020 8 AIFISGLLVSFTGYALYTAFG 28 (43)
T ss_pred HHHHHHHHHHhhheeeeeccC
Confidence 345666677777888777653
Done!