RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 019529
(339 letters)
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 50.6 bits (122), Expect = 2e-08
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 29 EWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA----------GGRW 78
+ DDA ++ LPGF KE IKV D + L + G R +
Sbjct: 1 DVYETDDAYVVEADLPGFKKEDIKV--EVEDGV---LTISGEREEEEEEEENYLRRERSY 55
Query: 79 NQFSELYKIPETCDINNINSVFQGGVLTIIMPK 111
FS +++PE D + I + + GVLTI +PK
Sbjct: 56 GSFSRSFRLPEDVDPDKIKASLENGVLTITLPK 88
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 49.9 bits (120), Expect = 3e-08
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 30 WKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGR-WNQFSELYKIP 88
W DD ++ V LPG KE IKV V++ L++ + R + +F +++P
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKV---EVEDNVLTISGKREEEEERERSYGEFERSFELP 57
Query: 89 ETCDINNINSVFQGGVLTIIMPK 111
E D + + GVL I +PK
Sbjct: 58 EDVDPEKSKASLENGVLEITLPK 80
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 46.1 bits (110), Expect = 1e-06
Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 29 EWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRW-------NQF 81
+ K + DA ++ + +PGF E++KV V++ + +K + + F
Sbjct: 1 DIKEDKDAFVVKLDVPGFKPEELKVK---VEDNRVLVKGKHEKEEEDDHGLRSERSYRSF 57
Query: 82 SELYKIPETCDINNINSVFQGGVLTIIMPKIKNNAQKD 119
S + +PE D + + + + GVLT+ +PK++ +K
Sbjct: 58 SRKFVLPENADPDKVKASLKDGVLTVTVPKLEPPEKKP 95
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 45.0 bits (107), Expect = 2e-06
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 30 WKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRR--PLAGGRWN-------Q 80
WK +A + +PG KE +KV D L + E ++ G W+ +
Sbjct: 4 WKETPEAHVFKADVPGVKKEDVKV--EVEDGRVLRISGERKKEEEKKGDDWHRVERSSGR 61
Query: 81 FSELYKIPETCDINNINSVFQGGVLTIIMPK 111
F +++PE D + + + + GVLT+ +PK
Sbjct: 62 FVRRFRLPENADADEVKAFLENGVLTVTVPK 92
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 40.4 bits (95), Expect = 2e-04
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 16/101 (15%)
Query: 24 FKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRP----------- 72
P + + DD + LPG KE I++ T N +L + G R
Sbjct: 39 GTPPVDIEETDDEYRITAELPGVDKEDIEI--TVEGN---TLTIRGEREEEEEEEEEGYL 93
Query: 73 LAGGRWNQFSELYKIPETCDINNINSVFQGGVLTIIMPKIK 113
+ +F +++PE D I + ++ G+LT+ +PK +
Sbjct: 94 RRERAYGEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAE 134
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 39.4 bits (91), Expect = 0.003
Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 23/219 (10%)
Query: 111 KIKNNAQKDAKADATHHETSSSQEIAETSTVQEKQRE----EKNVVEAPSPQKVTTSTEE 166
++K A KAD + ++ E E+ ++ +K EA ++ EE
Sbjct: 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468
Query: 167 STQLDSQKTASLVDDITKQIDESG--GETACQKADEMGHAVEASPKAAALVDTA-AKIHD 223
+ + D K + + K+ DE+ E A +KADE A EA KA AK D
Sbjct: 1469 AKKADEAKKKA---EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD 1525
Query: 224 EIKRVGTDGESAYKIANEEKEKSEAIGK----EKPAEVEKLESKEEEEKQKND------- 272
E K+ ++ EEK+K++ + K +K E +K E ++ E+ KN
Sbjct: 1526 EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE 1585
Query: 273 --QSEEKRKVEVDDLISEKPKDKKHESAFASEGLIEGKQ 309
++EE R EV L E+ K K E+ A E I+ ++
Sbjct: 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE 1624
Score = 38.6 bits (89), Expect = 0.006
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 11/189 (5%)
Query: 121 KADATHHETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQKTASLV- 179
KA+ + +++ E +E ++ E+ + + ++ EE+ + D K A
Sbjct: 1231 KAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKK 1290
Query: 180 --DDITKQIDESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYK 237
D+ K ++ + A +KA+E A EA KA + A K D K+ + + A +
Sbjct: 1291 KADEAKKAEEKKKADEAKKKAEEAKKADEAKKKA----EEAKKKADAAKKKAEEAKKAAE 1346
Query: 238 IANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKND----QSEEKRKVEVDDLISEKPKDK 293
A E E + + + E E K+EE K+K D ++EEK+K + +E+ K K
Sbjct: 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Query: 294 KHESAFASE 302
E A+
Sbjct: 1407 ADELKKAAA 1415
Score = 36.7 bits (84), Expect = 0.021
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 10/161 (6%)
Query: 143 EKQREEKNVVEAPSPQKVTTSTEESTQLDSQKTASLVDDITKQIDESGGETACQKADEMG 202
+K E+K EA ++ + E + + K A D+ K+ +E A +KAD
Sbjct: 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA---DEAKKKAEE-----AKKKADAAK 1335
Query: 203 H-AVEASPKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKLE 261
A EA A A A DE + E+A K E K+K++A K+K E +K +
Sbjct: 1336 KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA-KKKAEEKKKAD 1394
Query: 262 SKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKKHESAFASE 302
+++ ++ +++E +K +++ K K E A E
Sbjct: 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Score = 36.3 bits (83), Expect = 0.024
Identities = 53/207 (25%), Positives = 84/207 (40%), Gaps = 23/207 (11%)
Query: 111 KIKNNAQKDAKADATHHETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQL 170
K A+K +A E + A+ + K+ E EA + + EE +
Sbjct: 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368
Query: 171 DSQKTASL---VDDITKQIDE--------SGGETACQKADEMGHAVEASPKAAALVDTAA 219
+K D K+ +E E +KADE+ A A KA D A
Sbjct: 1369 AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA----DEAK 1424
Query: 220 KIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQ----SE 275
K +E K+ + A K A E K+ EA K + A+ + K+ EE +K D+ +E
Sbjct: 1425 KKAEEKKK----ADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
Query: 276 EKRKVEVDDLISEKPKDKKHESAFASE 302
E +K + +E+ K K E+ A+E
Sbjct: 1481 EAKKADEAKKKAEEAKKKADEAKKAAE 1507
Score = 36.3 bits (83), Expect = 0.025
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 16/180 (8%)
Query: 136 AETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQKTASLVDDITKQIDESGGETAC 195
AE + ++ ++ ++ + Q EE + + K A + I + E
Sbjct: 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK 1674
Query: 196 QKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEAIGKE--- 252
+KA+E A E KAA + K +E K+ E K EEK+K+E + K
Sbjct: 1675 KKAEEAKKAEEDEKKAA---EALKKEAEEAKKA----EELKKKEAEEKKKAEELKKAEEE 1727
Query: 253 KPAEVEKLESKEEEEKQKNDQS----EEKRKVEVDDLISEKPKD--KKHESAFASEGLIE 306
+ E+ + + EE+K+K +++ EEK+K+ EK + +K + A E L E
Sbjct: 1728 NKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
Score = 36.3 bits (83), Expect = 0.029
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 16/187 (8%)
Query: 113 KNNAQKDAKADATHHETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDS 172
A++D E + E A V + EEK + ++ + E + +
Sbjct: 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKM----KAEEAKKAEEAKIKAEE 1624
Query: 173 QKTASLVDDITKQIDESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDG 232
K A +Q+ + E +KA+E+ A E + AA AK +E K+
Sbjct: 1625 LKKAEEEKKKVEQLKKKEAEEK-KKAEELKKAEEENKIKAA---EEAKKAEEDKK---KA 1677
Query: 233 ESAYKIANEEKEKSEAIGK--EKPAEVEKLESKEEEEKQKNDQ---SEEKRKVEVDDLIS 287
E A K +EK+ +EA+ K E+ + E+L+ KE EEK+K ++ +EE+ K++ ++
Sbjct: 1678 EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
Query: 288 EKPKDKK 294
E +DKK
Sbjct: 1738 EAEEDKK 1744
Score = 35.5 bits (81), Expect = 0.047
Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 14/188 (7%)
Query: 116 AQKDAKADATHHETSSSQEIAETSTVQEKQREEKNVVEAPSPQK----VTTSTEESTQLD 171
A++ A+A E + + A +EK++ ++ +A +K + + + D
Sbjct: 1362 AEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAD 1421
Query: 172 SQKTASLVDDITKQIDESGGETACQKADEMGHAVEASPKAAALVDTA--AKIHDEIKRVG 229
K + ++ K + +KADE E + KA A AK DE K+
Sbjct: 1422 EAKKKA--EEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA 1479
Query: 230 TD---GESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQ---SEEKRKVEVD 283
+ + A K A E K+K++ K A+ + E+K+ EE +K D+ +EE +K +
Sbjct: 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
Query: 284 DLISEKPK 291
EK K
Sbjct: 1540 KKAEEKKK 1547
Score = 34.7 bits (79), Expect = 0.071
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 23/201 (11%)
Query: 116 AQKDAKAD-ATHHETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQK 174
A++ KAD A E + + A+ + ++K E K E ++ + E + +
Sbjct: 1518 AEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKN 1577
Query: 175 TASLVDDITKQIDES--------GGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIK 226
A + K+ +E+ E KA+E A EA KA L K +E K
Sbjct: 1578 MALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL----KKAEEEKK 1633
Query: 227 RVGTDGESAYKIANEEKEKSEAIGKEK---PAEVEKLESKEEEEKQKNDQSEEKRKVEVD 283
+V E K EEK+K+E + K + + + K EE+K+K +EE +K E D
Sbjct: 1634 KV----EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK---AEEAKKAEED 1686
Query: 284 DLISEKPKDKKHESAFASEGL 304
+ + + K+ E A +E L
Sbjct: 1687 EKKAAEALKKEAEEAKKAEEL 1707
Score = 34.7 bits (79), Expect = 0.075
Identities = 36/179 (20%), Positives = 74/179 (41%), Gaps = 10/179 (5%)
Query: 128 ETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQKTASLVDDITKQID 187
E +++ + V++ + +K+ EA ++ + E +++ + +
Sbjct: 1216 EARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE 1275
Query: 188 ESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTD---GESAYKIANEEKE 244
E+ +KADE+ A E A K DE K+ + + A K A E K+
Sbjct: 1276 EA------RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1329
Query: 245 KSEAIGKEKPAEVEKLESKEEEEKQKNDQSEE-KRKVEVDDLISEKPKDKKHESAFASE 302
K++A K+ + E+ + E + D++E + K E + E+ K K + +E
Sbjct: 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
Score = 32.0 bits (72), Expect = 0.53
Identities = 39/206 (18%), Positives = 89/206 (43%), Gaps = 6/206 (2%)
Query: 111 KIKNNAQKDAKADATHHETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQL 170
+ K + KA+ +++ + + +++++ ++ + + EE+ +
Sbjct: 1611 EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
Query: 171 DSQKTASLVDDITKQIDESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGT 230
+ K + ++ ++ E ++A+E A E K A A ++ +
Sbjct: 1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI 1730
Query: 231 DGESAYKIANEEKEKSEAIGKE-----KPAEVEKLESKEEEEKQKNDQSEEKRKVEVDDL 285
E A K A E+K+K+E K+ K A ++K E K+ EE +K ++ + +++ +D
Sbjct: 1731 KAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDE 1790
Query: 286 ISEKPKDKKHESAFA-SEGLIEGKQQ 310
DKK + F +IEG ++
Sbjct: 1791 KRRMEVDKKIKDIFDNFANIIEGGKE 1816
>gnl|CDD|224254 COG1335, PncA, Amidases related to nicotinamidase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 205
Score = 37.9 bits (88), Expect = 0.003
Identities = 36/160 (22%), Positives = 54/160 (33%), Gaps = 23/160 (14%)
Query: 170 LDSQKTASLVDDITKQIDESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVG 229
LD KTA +V D+ GG A D + P AALVD A + +
Sbjct: 1 LDPAKTALIVVDMQNDFMPGGGSLAALGVDG----RKIIPNIAALVDAARAAGQPV--IA 54
Query: 230 TDGESAYKIANEEKEKSEAIGKEKPAE--VEKLESKEEEEKQKND--QSEEKRKVEVDDL 285
T + + S A E + + K + V +
Sbjct: 55 T------QDWHPADISSLAGSPESSKLFPWPRHDVKGTPGAELLGELPPAVDDAQLVPED 108
Query: 286 ISEKPKDKKHESAFASEGLIEGKQQLLVNMGTAVLVIVGL 325
+ K K SAFA L + +L N+G +V+ G+
Sbjct: 109 VIFK---KHGYSAFAGTDLDD----ILRNLGIDTVVVCGI 141
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 36.1 bits (83), Expect = 0.025
Identities = 22/151 (14%), Positives = 47/151 (31%), Gaps = 6/151 (3%)
Query: 155 PSPQKVTTSTEESTQLDS----QKTASLVDDITKQIDESGGETACQKADEMGHAVEASPK 210
P ++ + S + DD+ + + E + A E V
Sbjct: 298 REPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDG 357
Query: 211 AAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQK 270
+ D + D A++ ++ + E+PA + E+ +E E +
Sbjct: 358 ESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALAS-EAHDETEPEV 416
Query: 271 NDQSEEKRKV-EVDDLISEKPKDKKHESAFA 300
+++ + D+L P D E
Sbjct: 417 PEKAAPIPDPAKPDELAVAGPGDDPAEPDGI 447
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 35.3 bits (82), Expect = 0.048
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 223 DEIKRVGTDGESA---YKIANEEKEKSEAIGKEKPAEVEKLESKEEE---EKQKNDQSEE 276
+EI+ + ++ KI + ++K E KEK + + KEEE EK+K ++ +E
Sbjct: 397 EEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKE 456
Query: 277 KRKVEVDDLISEKPKDKKHES 297
+ + E ++ E+ + KK ++
Sbjct: 457 EEEEEAEEEKEEEEEKKKKQA 477
Score = 30.3 bits (69), Expect = 1.5
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 206 EASPKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEAIG--KEKPAEVEKLESK 263
+A+ K +V+ A K +E K+ A K EE+E+ + +++ E E E K
Sbjct: 407 KATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEK 466
Query: 264 EEEEKQKNDQS 274
EEEE++K Q+
Sbjct: 467 EEEEEKKKKQA 477
Score = 29.1 bits (66), Expect = 3.6
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 230 TDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEE----EKQKNDQSEEKRKVEVDDL 285
T+ E + +++ K EK + + E KE++ +K ++ EE+ K + ++
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 286 ISEKPKDKKHESAFASEGLIEGKQ 309
E+ ++ + E E + KQ
Sbjct: 455 KEEEEEEAEEEK--EEEEEKKKKQ 476
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 34.8 bits (80), Expect = 0.051
Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 2/154 (1%)
Query: 141 VQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQKTASLVDDITKQIDESGGETACQKADE 200
+++Q EE +A +++ +E QK + + + E A KA
Sbjct: 84 KEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAA 143
Query: 201 MGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKL 260
A +A +A A K E K+ + E+A K A E K+K+EA K A K
Sbjct: 144 AAKA-KAEAEAKRAAAAAKKAAAEAKKK-AEAEAAKKAAAEAKKKAEAEAAAKAAAEAKK 201
Query: 261 ESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKK 294
+++ E +K+ ++++K E ++ + K
Sbjct: 202 KAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAK 235
Score = 29.0 bits (65), Expect = 3.6
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 13/163 (7%)
Query: 143 EKQREEKNVVEAPSP-QKVTTSTEESTQLDSQKTASLVDDITKQIDESGGETACQKADEM 201
E+QR++K +A QK E QL+ ++ A+ ++ + E A Q A +
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAA------QEQKKQAEEAAKQAALKQ 131
Query: 202 GHAVEASPKAAALVDTAAKIHDEIKRVGTDG----ESAYKIANEEKEKSEAIGKEKPAEV 257
A EA+ KAAA AK E KR A K A E K A +K AE
Sbjct: 132 KQAEEAAAKAAA--AAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEA 189
Query: 258 EKLESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKKHESAFA 300
E E K+K + +K+ + A A
Sbjct: 190 EAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAA 232
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 35.2 bits (80), Expect = 0.054
Identities = 31/166 (18%), Positives = 57/166 (34%), Gaps = 2/166 (1%)
Query: 117 QKDAKADATHHETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQKTA 176
+ + + D+ EI + T++ +E P P T E + + Q T
Sbjct: 239 ELEPQDDSEDDYVIPDAEIISSPTLEVTAPKEVEQPLQPEPVDEETVAETKAEEEPQPTQ 298
Query: 177 SLVDDITKQIDESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAY 236
++ T ES E + ++ AV+ + + + + K V E
Sbjct: 299 TVETKPTSAP-ESTVEENLPEINQPTQAVQPTSETISTTPVEPTDQLKPKEVDQIQEELK 357
Query: 237 KI-ANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVE 281
K E +E + LE + E Q N + E ++ VE
Sbjct: 358 KTKEIEVEELPTKKNDLVEINFDDLEELKFELVQTNQEKEPEKAVE 403
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 34.2 bits (78), Expect = 0.10
Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 6/168 (3%)
Query: 129 TSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQKTASLVDDITKQID- 187
T EI +E + E + E + +E+ + D+ +I
Sbjct: 726 TEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQA 785
Query: 188 ----ESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGT-DGESAYKIANEE 242
E G+ + E EA K + + D + T + E + E
Sbjct: 786 GEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEA 845
Query: 243 KEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDDLISEKP 290
K+ + + ++ E +EEEE+++ ++ EE+ + E ++ +E+P
Sbjct: 846 KQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEP 893
Score = 31.5 bits (71), Expect = 0.70
Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 23/169 (13%)
Query: 113 KNNAQKDAKADATHHETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDS 172
K+ + + T HE + E E E Q E ++ + E T+
Sbjct: 752 KHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGE 811
Query: 173 QKTASLVDDITKQIDESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDG 232
+ DE G++ Q D + A AK ++ G DG
Sbjct: 812 K-------------DEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEK----GVDG 854
Query: 233 ESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVE 281
+ E+E+ E+ E E+ E +EEEE+++ +++EE +E
Sbjct: 855 GGGSDGGDSEEEE------EEEEEEEEEEEEEEEEEEEEEENEEPLSLE 897
Score = 29.2 bits (65), Expect = 4.0
Identities = 34/169 (20%), Positives = 57/169 (33%), Gaps = 24/169 (14%)
Query: 118 KDAKADATHHETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQKTAS 177
K A+A H + +E E T E + E++ EA + T E ++ +
Sbjct: 632 KGDVAEAEHTGERTGEE-GERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAER- 689
Query: 178 LVDDITKQIDESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYK 237
K E GE ++AD G + E + +GE
Sbjct: 690 ------KGEQEGEGEIEAKEADHKGETEAEEVEHEG--------ETEAEGTEDEGEI--- 732
Query: 238 IANEEKEKSEAIGKEKPAEVEKLESKEEE--EKQKNDQSEEKRKVEVDD 284
E E+ E + E E E E E K+ + E + + + D+
Sbjct: 733 ---ETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDE 778
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is
a family of proteins conserved in yeasts. The function
is not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 34.1 bits (78), Expect = 0.12
Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 16/180 (8%)
Query: 133 QEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQL----DSQKTASLVDDITKQIDE 188
+ + ET++ V P Q T+ EE T ++ ++E
Sbjct: 248 KIVRETASTGSGLGTSPEVDGTPEEQVGYTAPEEYTSRLSSPAPDSSSFSSPSGESGLEE 307
Query: 189 SGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEA 248
E +DE+ A E + ++ A+ + + E R +D +S E K +
Sbjct: 308 REAEEPILASDEV--AKEPAGESPAVSPSFEREKSEKSRHESDPKS------RENSKPAS 359
Query: 249 IGKEKPAEVEK--LESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKKHESAFASEGLIE 306
I P + LE EE E + E + S +P+++KH F SE + E
Sbjct: 360 IYGSVPDLIRHTPLEDVEEYEPLFPEDESEIAVKPPTEESSRRPEEEKHR--FPSEDVWE 417
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 33.5 bits (77), Expect = 0.16
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 231 DGESAYKIANEE---KEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDDLIS 287
DG S +K+ ++E +EK E ++ + KL+ K+EE+K+K + EK K+ +
Sbjct: 540 DGPSVWKLDDKEELQREKEEKEALKEQKRLRKLK-KQEEKKKKELEKLEKAKIPPAEFFK 598
Query: 288 EKPK 291
+
Sbjct: 599 RQED 602
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 33.2 bits (76), Expect = 0.17
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 241 EEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKKHESAFA 300
+ +++ E AE K + + E +K+K + + + ++D I EK ++
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSSLQTKLT 132
Query: 301 SEGL 304
EGL
Sbjct: 133 EEGL 136
>gnl|CDD|219502 pfam07662, Nucleos_tra2_C, Na+ dependent nucleoside transporter
C-terminus. This family consists of nucleoside
transport proteins. Rat CNT 2 is a purine-specific
Na+-nucleoside cotransporter localised to the bile
canalicular membrane. CNT 1 is a a Na+-dependent
nucleoside transporter selective for pyrimidine
nucleosides and adenosine it also transports the
anti-viral nucleoside analogues AZT and ddC. This
alignment covers the C-terminus of this family of
transporters.
Length = 208
Score = 32.0 bits (74), Expect = 0.25
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 280 VEVDDLISEKPKDKKHESAF--ASEGLIEGKQQLLVNMGTAVLVIVGLGAYLSYTITSFG 337
E + E ++K + A+ G ++G +L +N+G ++ V L A ++ + G
Sbjct: 25 EEPETDGEEDEDEEKPANVIDAAANGALDG-LKLALNVGAMLIAFVALIALINGLLGWIG 83
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 32.3 bits (73), Expect = 0.42
Identities = 39/190 (20%), Positives = 65/190 (34%), Gaps = 20/190 (10%)
Query: 114 NNAQKDAKADATHHETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQ 173
N A +D E S ++ +Q +E P P+ E +LD +
Sbjct: 3942 NKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQEN---NSQPPPENEDLDLPEDLKLDEK 3998
Query: 174 KTASLVDDITKQIDESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGE 233
+ D + +D + ++AD E L + D +
Sbjct: 3999 EGDVSKDSDLEDMDMEAADENKEEAD--AEKDEPMQDEDPLEENNTLDEDI-------QQ 4049
Query: 234 SAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQ--KNDQSEEKRKVEVDDLISEKPK 291
+ E+ EK G E E ++ EE + K+D+ E+ +V D I PK
Sbjct: 4050 DDFSDLAEDDEKMNEDGFE-----ENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPK 4104
Query: 292 DKKHESAFAS 301
+S FAS
Sbjct: 4105 -MDAKSTFAS 4113
Score = 28.0 bits (62), Expect = 8.9
Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 118 KDAKADATHHETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQKTAS 177
+D K D + S ++ + + +E+ E P + EE+ LD
Sbjct: 3991 EDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQD 4050
Query: 178 LVDDITKQIDESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYK 237
D+ + D+ +K +E G + D DE G E
Sbjct: 4051 DFSDLAE--DD-------EKMNEDGFEENVQENEESTEDGVKS--DEELEQGEVPEDQ-A 4098
Query: 238 IANEEKEKSEAIGKEKPAEVE---KLESKEEEEKQKND 272
I N K +++ A+ E K E EE + D
Sbjct: 4099 IDNHPKMDAKSTFASAEADEENTDKGIVGENEELGEED 4136
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 30.1 bits (69), Expect = 0.43
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 19/94 (20%)
Query: 31 KHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPL------AGGRW------ 78
K DD I+ LPGF KE IK+ Y D L + +R G +
Sbjct: 6 KETDDEYIVEADLPGFKKEDIKL--DYKDGY---LTISAKRDESKDEKDKKGNYIRRERY 60
Query: 79 -NQFSELYKIPETCDINNINSVFQGGVLTIIMPK 111
FS + +P D I + ++ GVL I +PK
Sbjct: 61 YGSFSRSFYLPNV-DEEEIKAKYENGVLKITLPK 93
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 29.0 bits (66), Expect = 0.78
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 45 GFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVFQ-GG 103
GF E++KV + + + K E R G +F+ Y++PE D +++ S G
Sbjct: 17 GFKPEELKV-KVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDG 75
Query: 104 VLTIIMPK 111
VLTI PK
Sbjct: 76 VLTIEAPK 83
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 31.1 bits (70), Expect = 0.89
Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 9/138 (6%)
Query: 116 AQKDAKADATHHETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTE-ESTQLDSQK 174
Q DA + + + V++KQ+E KN P P ++ E + + ++
Sbjct: 225 KQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKN---LPKPADTSSPKEDKQVAENQKR 281
Query: 175 TASLVDDITKQIDESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGES 234
K+ DE + KA ++ +AS K A D + + + V D +
Sbjct: 282 EIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAE--DKELEAQKKREPVAEDLQ- 338
Query: 235 AYKIANEEKEKSEAIGKE 252
K + + + ++ ++
Sbjct: 339 --KTKPQVEAQPTSLNED 354
Score = 29.2 bits (65), Expect = 3.6
Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 4/133 (3%)
Query: 181 DITKQIDESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYKIAN 240
D+ ++ + + A Q +E+ + KA D A D+ + + K
Sbjct: 202 DLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLP 261
Query: 241 EEKEKSEAIGKEKPAEVEKLES-KEEEEKQKNDQSEEKRKVEVDDLISEKPKDKKHESAF 299
+ + S ++ AE +K E K + E +KND+ K K D + ++ K
Sbjct: 262 KPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAK---DHKAFDLKQESKASEKE 318
Query: 300 ASEGLIEGKQQLL 312
A + +E +++
Sbjct: 319 AEDKELEAQKKRE 331
>gnl|CDD|113902 pfam05149, Flagellar_rod, Paraflagellar rod protein. This family
consists of several eukaryotic paraflagellar rod
component proteins. The eukaryotic flagellum represents
one of the most complex macromolecular structures found
in any organism and contains more than 250 proteins. In
addition to its locomotive role, the flagellum is
probably involved in nutrient uptake since receptors for
host low-density lipoproteins are localised on the
flagellar membrane as well as on the flagellar pocket
membrane.
Length = 289
Score = 30.8 bits (70), Expect = 0.95
Identities = 13/83 (15%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 220 KIHDEIKRVGTDGESAYKIANEEKEKSEA-IGKEKPAEVEKLESKEEEEKQKNDQSEEKR 278
+ ++ + K + ++ +SE + + + + +E E++ D +EE+R
Sbjct: 24 RCKEKREEEDAADAKQRKRYSAQRRESEKFLQQNVEQQQACWRAIQELERELRDLAEERR 83
Query: 279 KVEVDDLISEKPKDKKHESAFAS 301
+ EV+ I ++++ + + S
Sbjct: 84 E-EVERRIEAVEREEQRRTDYES 105
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 30.5 bits (69), Expect = 1.0
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 231 DGESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEK--------RKVEV 282
G + E + + ++ E +EEE+K+K + E K +K ++
Sbjct: 118 YGAPDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKM 177
Query: 283 DDLISEKPKDKK 294
+ K K KK
Sbjct: 178 VEPKGSKKKKKK 189
>gnl|CDD|204055 pfam08764, Coagulase, Staphylococcus aureus coagulase.
Staphylococcus aureus secretes a cofactor called
coagulase. Coagulase is an extracellular protein that
forms a complex with human prothrombin, and activates it
without the usual proteolytic cleavages. The resulting
complex directly initiates blood clotting.
Length = 282
Score = 30.5 bits (69), Expect = 1.1
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 256 EVEKLESKEEEEKQKNDQSEEKRKVEVDDLISE 288
EV+K++SK + K +++ EEK EV DL+SE
Sbjct: 133 EVKKIQSKNSDLKPYSEEEEEKATDEVYDLVSE 165
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 30.6 bits (69), Expect = 1.3
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 207 ASPKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEE 266
A+ KAA + AAK +E ++ E+ K A E K K+EA ++K E + + + EE
Sbjct: 99 AAEKAAKQAEQAAKQAEEKQKQ--AEEAKAKQAAEAKAKAEAEAEKKAKE--EAKKQAEE 154
Query: 267 EKQKNDQSEEKRKVE 281
E + +E K+K
Sbjct: 155 EAKAKAAAEAKKKAA 169
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 30.8 bits (69), Expect = 1.3
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 243 KEKSEAIGK------EKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKKHE 296
K+ SE IG EK E E + EE+ K+ ++ EE + EV + K K K
Sbjct: 193 KKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKV 252
Query: 297 SAFASEGLIEGKQQLL 312
E ++ K + L
Sbjct: 253 KEVTKEYEVQNKHKPL 268
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 28.9 bits (65), Expect = 2.6
Identities = 13/87 (14%), Positives = 36/87 (41%)
Query: 209 PKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEK 268
+ ++ +EI++V + E K ++K+ + K+K + +K + K E++
Sbjct: 55 AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKD 114
Query: 269 QKNDQSEEKRKVEVDDLISEKPKDKKH 295
+K + + + + + K
Sbjct: 115 EKEAEDKLEDLTKSYSETLSTLSELKP 141
>gnl|CDD|178669 PLN03122, PLN03122, Poly [ADP-ribose] polymerase; Provisional.
Length = 815
Score = 29.8 bits (67), Expect = 2.7
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 8/107 (7%)
Query: 187 DESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKS 246
+E G T QKA+ H E SPK A K + +G+SA E +E
Sbjct: 15 EEGKGGTRKQKAENKEHEGEQSPK------KAKKEKKQDDSGNGNGKSAEDAVKEFEEFC 68
Query: 247 EAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDK 293
+AI E+ +E++ EE Q + S++ D + P +K
Sbjct: 69 KAI--EEHLSIEQMREILEENGQDSSGSDDAVLPRCQDQLFYGPLEK 113
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 29.5 bits (65), Expect = 2.7
Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 6/149 (4%)
Query: 134 EIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQKTASLVDDITKQIDESGGET 193
E E T QEKQ+ EK +E + Q ++ T+ + QKT + +++ E
Sbjct: 152 EQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIEL 211
Query: 194 ACQKADEMGHAVEASPKAAALVDTAAKIHDE------IKRVGTDGESAYKIANEEKEKSE 247
+K + + + A + E IK++G A +I E K
Sbjct: 212 EQEKQKTENEKQDLIKEQKDFIKEAEQNCQENHNQFFIKKLGIKAGIAIEIEAECKTPKP 271
Query: 248 AIGKEKPAEVEKLESKEEEEKQKNDQSEE 276
A + P + + L + ++ Q+ +++E
Sbjct: 272 AKTNQTPIQPKHLPNSKQPHSQRGSKAQE 300
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 29.4 bits (67), Expect = 2.7
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 233 ESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKR 278
E A +I E K+++EAI KE LE+KEE K +N+ +E R
Sbjct: 38 EEAKRILEEAKKEAEAIKKEA-----LLEAKEEIHKLRNEFEKELR 78
Score = 28.6 bits (65), Expect = 4.7
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 23/108 (21%)
Query: 223 DEIKRVGTDGESAYKIANEE---------------KEKSEAIGKEKPAEVEKLESKEEEE 267
+EI ++ + E + E K E + K + E+LE KE+E
Sbjct: 64 EEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKRE----EELEKKEKEL 119
Query: 268 KQKNDQSEEKRKVEVDDLISEKPKDKKHESAFASEGLIEGKQQLLVNM 315
+QK + E+K + E+++LI E+ ++ + S +E E K+ LL +
Sbjct: 120 EQKQQELEKKEE-ELEELIEEQLQELERISGLTAE---EAKEILLEKV 163
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 29.7 bits (67), Expect = 2.9
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 2/98 (2%)
Query: 186 IDESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEK 245
I ++ + + H V A + K +E + + E I E
Sbjct: 409 IKDNVIANLSKNFFCITHEVGAEEIILYFL--LKKFLEEEAILKSLEEFKQSIVKEAALS 466
Query: 246 SEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVEVD 283
+EK E + + +EE +K + K+ EVD
Sbjct: 467 ILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVD 504
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 29.2 bits (65), Expect = 3.4
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 238 IANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKK 294
I++ ++ +E E E E+ + +++SEE++ E L + K KK
Sbjct: 287 ISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKK 343
Score = 28.0 bits (62), Expect = 9.3
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 230 TDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQS--EEKRKVEVDDLIS 287
SA EE+E + E+E+ E EE E++KN++ K+ ++ L
Sbjct: 287 ISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKG 346
Query: 288 EKPKDKKHES 297
+K K +S
Sbjct: 347 KKNGLDKDDS 356
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.4 bits (67), Expect = 3.5
Identities = 18/84 (21%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 233 ESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKR----KVEVDDLISE 288
E + A +++E + +E + EKL+ +E++ ++ ++ ++ K E D++I E
Sbjct: 533 EQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKE 592
Query: 289 KPKDKKHE-SAFASEGLIEGKQQL 311
+ +K ++ + LIE +++L
Sbjct: 593 LRQLQKGGYASVKAHELIEARKRL 616
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 29.2 bits (66), Expect = 3.6
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 219 AKIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKR 278
A++ E++++ D K+A E+EK+E + E++KL+++ + ++ D+ E K
Sbjct: 9 AELAKELRKLTEDE----KLAEAEEEKAEYDALK--EEIDKLDAEIDRLEELLDELEAKP 62
Query: 279 KVEVDDLISEKPKDKKHESAFASEGLIEGKQQLLVNMGTAVLVIVGL-GAYL 329
+ E+ +++ A + G L A+ G YL
Sbjct: 63 AASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAEERKALSTGTDSDGGYL 114
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 28.6 bits (64), Expect = 4.0
Identities = 15/65 (23%), Positives = 26/65 (40%)
Query: 220 KIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRK 279
K + EI + A + + A +K EK E K++ +K+K +
Sbjct: 27 KGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKKVPLQVNPAQ 86
Query: 280 VEVDD 284
+ VDD
Sbjct: 87 LFVDD 91
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 28.9 bits (65), Expect = 4.3
Identities = 27/97 (27%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Query: 223 DEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVEV 282
DE++R+ + E K A E+KEK E I + AE ++ E++ K+ D+ E++K ++
Sbjct: 505 DEVERMVKEAE---KNAAEDKEKREKIDLKNQAESLCYQA-EKQLKELKDKISEEKKEKI 560
Query: 283 DDLISEKPKDKKHESAFASEGLIEGKQQLLVNMGTAV 319
++LI + + ++++ + + L+E Q+ L+ +G V
Sbjct: 561 ENLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEV 597
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 29.1 bits (65), Expect = 4.4
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 210 KAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQ 269
K A ++ + +++ G+ G +A +E + +EK E K E K+++EK
Sbjct: 65 KCAESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKP 124
Query: 270 KNDQSEEKRKVEVDDLISEKPKDKKHE 296
K + + K K E + K K+K+ E
Sbjct: 125 KEEPKDRKPKEEAKEKRPPKEKEKEKE 151
>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional.
Length = 188
Score = 28.0 bits (63), Expect = 5.0
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 16/96 (16%)
Query: 216 DTAAKIHDEIKRVGTDGES-AYKIANEEKEKSEAIGKEKPAEVE--------------KL 260
D + + + + A +I E + +E I +++ AE E KL
Sbjct: 9 DIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKL 68
Query: 261 ESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKKHE 296
E+K E + + E+ R +V+D I+ DK+ E
Sbjct: 69 EAKRERLNARKEVLEDVR-NQVEDEIASLDGDKREE 103
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 28.7 bits (64), Expect = 5.1
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 251 KEKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDK 293
+EK E+EKL +KEE E+++ Q+EE+R+ E + E + +
Sbjct: 252 EEKRRELEKL-AKEEAERER--QAEEQRRREEEKAAMEADRAQ 291
>gnl|CDD|165425 PHA03154, PHA03154, hypothetical protein; Provisional.
Length = 304
Score = 28.5 bits (63), Expect = 5.5
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 71 RPLAGGRWNQFSELYKIPETCDINNINSVFQGGVLTIIMPKIKNNAQKDAKAD 123
R R++ S+L+K DIN I + F+ +L ++PK A K D
Sbjct: 3 RLYQPQRYSLISDLHKNFHYVDINVIKAEFKNVILDTVVPKFSQPATHLEKGD 55
>gnl|CDD|226063 COG3533, COG3533, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 589
Score = 28.6 bits (64), Expect = 5.6
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 25/81 (30%)
Query: 186 IDESGGETACQKADEM--GHAVEASPKAAALVDTAAKIHDEIKRV--------------- 228
I + G E Q+ DE+ GHAV D A + D+ R
Sbjct: 207 IHQRGVEPLAQRGDELEGGHAVRQIYLYIGAADLAEETGDDSLRQAAEFLWQNVTTRQSY 266
Query: 229 -----GTDGE---SAYKIANE 241
G+ E Y + N
Sbjct: 267 ITGGNGSSNEHFGPDYDLPNR 287
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 28.4 bits (63), Expect = 5.7
Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 2/147 (1%)
Query: 128 ETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQKTASLVDDITKQID 187
E E AE E++++E+ +A + QK ++ + K+ +
Sbjct: 115 EQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAE 174
Query: 188 ESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSE 247
E+ A ++A A A KA A AA+ E + A EEK +E
Sbjct: 175 EA--AKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAE 232
Query: 248 AIGKEKPAEVEKLESKEEEEKQKNDQS 274
A+ +K + + ++K +
Sbjct: 233 KKKAAAKAKADKAAAAAKAAERKAAAA 259
Score = 28.0 bits (62), Expect = 8.7
Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 3/165 (1%)
Query: 141 VQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQKTASLVDDITKQIDESGGETAC--QKA 198
+E + ++ E + + Q +++ KQ +E + A +K
Sbjct: 89 AEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKK 148
Query: 199 DEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVE 258
E A A+ A AK E + A A K+K+EA K + +
Sbjct: 149 AEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAK 208
Query: 259 K-LESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKKHESAFASE 302
E+K + EK+ +EEK E ++ DK +A A+E
Sbjct: 209 AEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAE 253
>gnl|CDD|237612 PRK14108, PRK14108, bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Provisional.
Length = 986
Score = 28.8 bits (65), Expect = 5.8
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 219 AKIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAE 256
A+I I+ V KIA + E I +EKP
Sbjct: 821 ARIEAIIREVLARPRDIAKIAGDVAEMRRLIAQEKPPR 858
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 28.4 bits (64), Expect = 5.9
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 210 KAAALVDTA-AKIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEK 268
KA L+D A A++ EI + E ++A E EK ++ E + ++ + ++
Sbjct: 381 KAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKE 440
Query: 269 QKNDQSEEKRKVEVD-DLISE 288
+ + E++ + EVD D I+E
Sbjct: 441 GRIPELEKELEAEVDEDDIAE 461
>gnl|CDD|234616 PRK00076, recR, recombination protein RecR; Reviewed.
Length = 196
Score = 27.7 bits (63), Expect = 6.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 57 YVDNITLSLKVEGRRPL 73
YVD TLS +EGRR L
Sbjct: 180 YVDEGTLSRALEGRREL 196
>gnl|CDD|176886 cd08877, START_2, Uncharacterized subgroup of the steroidogenic
acute regulatory protein (StAR)-related lipid transfer
(START) domain family. Functionally uncharacterized
subgroup of the START domain family. The START domain
family belongs to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket. For some mammalian members of the START family
(STARDs), it is known which lipids bind in this pocket;
these include cholesterol (STARD1, -3, -4, and -5),
25-hydroxycholesterol (STARD5), phosphatidylcholine
(STARD2, -7, and -10), phosphatidylethanolamine
(STARD10) and ceramides (STARD11). Mammalian STARDs
participate in the control of various cellular
processes, including lipid trafficking between
intracellular compartments, lipid metabolism, and
modulation of signaling events. Mutation or altered
expression of STARDs is linked to diseases such as
cancer, genetic disorders, and autoimmune disease.
Length = 215
Score = 27.6 bits (62), Expect = 6.9
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 20/68 (29%)
Query: 3 MRPRYTIGNQPRQLMRRTYENFKPKSEWKHEDDASILLVYLPGFVKEQIKVM-NTYVDNI 61
+R TI M+ ++ W + + E I+V D
Sbjct: 4 IRQEATI-------MQENLKDLDESDGWTLQKE------------SEGIRVYYKFEPDGS 44
Query: 62 TLSLKVEG 69
LSL++EG
Sbjct: 45 LLSLRMEG 52
>gnl|CDD|163663 cd07420, MPP_RdgC, Drosophila melanogaster RdgC and related
proteins, metallophosphatase domain. RdgC (retinal
degeneration C) is a vertebrate serine-threonine protein
phosphatase that is required to prevent light-induced
retinal degeneration. In addition to its catalytic
domain, RdgC has two C-terminal EF hands. Homologs of
RdgC include the human phosphatases protein phosphatase
with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1
transcripts are present at low levels in the retina,
PPEF-2 transcripts and PPEF-2 protein are present at
high levels in photoreceptors. The PPP (phosphoprotein
phosphatase) family, to which RdgC belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 321
Score = 28.1 bits (63), Expect = 7.4
Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 39/122 (31%)
Query: 32 HEDDASIL-LVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYK---- 86
HED I+ L Y GF KE VM+ Y K+ G++ L +++
Sbjct: 120 HED--HIMNLRY--GFTKE---VMSKY--------KLHGKKILR-----LLEDVFSWLPL 159
Query: 87 --------------IPETCDINNINSVFQGGVLTIIMPKIKNNAQKDAKADATHHETSSS 132
I ++ D++ ++ + + ++++ P ++ ++ + E
Sbjct: 160 ATIIDNKILVVHGGISDSTDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDK 219
Query: 133 QE 134
E
Sbjct: 220 TE 221
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 28.1 bits (62), Expect = 7.7
Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 15/176 (8%)
Query: 113 KNNAQKDAKADATHHETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDS 172
N A K K E +S ++ K+ ++ S + S++ES
Sbjct: 126 PNEAGKPGKPKGNQGEGLASSSDGKSKA------SAKSGSKSASKHGESNSSDESATDSG 179
Query: 173 QKTASLVDDITKQIDESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDG 232
+ +AS+ + DE + E + AL K+ +EI + DG
Sbjct: 180 KASASVAGIVGA--DEEAPPAPKNTLTPLEELYETNVNLFALKHPLEKLEEEIDILKNDG 237
Query: 233 ESAYKIANEEK----EKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDD 284
+ K+A EE+ E+ E ++K +EK+ ++ +EEK K D+ + + +V D
Sbjct: 238 D---KVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEIKFIEHDVKD 290
>gnl|CDD|233039 TIGR00594, polc, DNA-directed DNA polymerase III (polc). All
proteins in this family for which functions are known
are DNA polymerases. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1022
Score = 28.1 bits (63), Expect = 8.0
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 179 VDDITKQIDESGGET---ACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGT 230
D I K I G+T A + + ++ E P+ L+D A K+ + G
Sbjct: 457 ADRIAKLIPPRPGKTLKEALEASPQLRQLYEEDPEVKQLIDMARKLEGLNRNAGV 511
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 27.9 bits (62), Expect = 8.2
Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 154 APSPQKVTTSTEESTQLDSQKTASLVDDIT-KQIDESGGETACQKADEMGHAVEASPKAA 212
A SP + S + DD T K D K + G E +
Sbjct: 400 ALSPSGKPRHSGVSVPASTSAMTHSFDDNTSKHADPCAMGV---KRMDEGILDERLGRLQ 456
Query: 213 ALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEAI 249
AL + H+EIKR + I E EK ++I
Sbjct: 457 ALSEKLRTQHEEIKRCREALQKKESIVMETLEKIQSI 493
>gnl|CDD|217823 pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes
2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is
required for propionate catabolism. It catalyzes the
third step of the 2-methylcitric acid cycle.
Length = 445
Score = 28.0 bits (63), Expect = 8.4
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 203 HAVEASPKAAALVDTAAKIHDEIKRVGTDG-ESAYKIANE 241
A +A A AL DEI+ + + E A +I N+
Sbjct: 272 SAADA---ALALRREEGDRADEIESIEIETFEVAIRIINK 308
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 28.0 bits (62), Expect = 8.7
Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 8/130 (6%)
Query: 152 VEAPSPQKVTTSTEESTQLDSQKTASLVDDITKQIDESGGETACQKADEMGHAVEASPKA 211
VE ++ +L + V+ + + + A Q A +G E
Sbjct: 776 VEIAVADPALRDLLQAGELARVHRVAGVEGS-RLVVAAATAPAPQSAVGVGPGFEVRVPL 834
Query: 212 AALVDTAA---KIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEK 268
A ++D AA ++ EI +V D + + + + PA VEK ++ EE +
Sbjct: 835 AGVIDLAAETARVDKEIGKVDQDLAVLER----KLQNPSFVQNAPPAVVEKDRARAEELR 890
Query: 269 QKNDQSEEKR 278
+K + E R
Sbjct: 891 EKRGKLEAHR 900
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 27.7 bits (62), Expect = 9.5
Identities = 25/171 (14%), Positives = 62/171 (36%), Gaps = 21/171 (12%)
Query: 116 AQKDAKADATHHETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQKT 175
+ ++ + + + + + + +VEA E ++ Q+
Sbjct: 82 VKIPRQSGLSEEVAEAEAKATSVAAEATTPKSIQELVEALEELLEELLKETASDPVVQEL 141
Query: 176 ASLVDDITKQIDESGGETACQKADEMGHAVEASPKAAALVDTA----AKIHDEIKRVGTD 231
S+ +D+ I E +L+ +A ++ ++ + +
Sbjct: 142 VSIFNDLIDSIKED----------------NLKDDLESLIASAKEELDQLSKKLAELKAE 185
Query: 232 GESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVEV 282
E + A +EK + E + K + + +LESKE +++ E+ K E+
Sbjct: 186 EEEELERALKEK-REELLSKLEEELLARLESKEAALEKQLRLEFEREKEEL 235
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family consists
of several ATP synthase E chain sequences which are
components of the CF(0) subunit.
Length = 83
Score = 25.9 bits (57), Expect = 9.6
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 236 YKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDK 293
+ +E++ E +EK E ++K K+K + E K E ++ K
Sbjct: 30 RSLKKKEEKIREYEAQEKLIE----KAKAAYAKKKQAKQEAKSLAEGSSAPFDETPKK 83
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 27.4 bits (61), Expect = 9.6
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 241 EEKEKSEAIGKEK--PAEVEKLESKEEEEKQKNDQSEEKRKVEVD 283
EEKE + + KE AE E ES+EE E++ + S+E K +
Sbjct: 68 EEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEE 112
>gnl|CDD|233302 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit.
The terms succinate dehydrogenase and fumarate reductase
may be used interchangeably in certain systems. However,
a number of species have distinct complexes, with the
fumarate reductase active under anaerobic conditions.
This model represents the fumarate reductase
flavoprotein subunit from several such species in which
a distinct succinate dehydrogenase is also found. Not
all bona fide fumarate reductases will be found by this
model.
Length = 580
Score = 27.9 bits (62), Expect = 9.9
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 174 KTASLVDDITKQIDESGGETACQKADEMGHAVEAS-------PKAAALVDTAAKIHDEIK 226
+ ++ + + + + GGE EMG +E+ P +D A++ + K
Sbjct: 427 QARTVELRLERLLSQHGGENWADIRAEMGATMESGCGIYRDGPLMQKTIDKLAELQERFK 486
Query: 227 RVGTDGES 234
R G D S
Sbjct: 487 RAGIDDHS 494
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.307 0.125 0.335
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,336,803
Number of extensions: 1530428
Number of successful extensions: 3268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2655
Number of HSP's successfully gapped: 366
Length of query: 339
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 241
Effective length of database: 6,590,910
Effective search space: 1588409310
Effective search space used: 1588409310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (26.6 bits)