RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019529
(339 letters)
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 57.3 bits (138), Expect = 4e-10
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 1 MAMRPRYTIGNQPRQLMRRTYENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDN 60
++ P Y +P +R SE + E D + + + F E++KV D
Sbjct: 42 TSLSPFY---LRPPSFLRAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKV-KVLGDV 97
Query: 61 ITLSLKVEGRRPLAGGRWNQFSELYKIPETCDINNINSVF-QGGVLTIIMPK 111
I + K E R+ G +F Y+IP D I S GVLT+ P+
Sbjct: 98 IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 149
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 47.2 bits (112), Expect = 4e-07
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 26 PKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELY 85
SE + + D ++ + + F E + V D + + K R+ G +F Y
Sbjct: 3 GISEVRSDRDKFVIFLDVKHFSPEDLTV-KVQEDFVEIHGKHNERQDDHGYISREFHRRY 61
Query: 86 KIPETCDINNINSVF-QGGVLTIIMPKIKNNAQKDAK 121
++P D + ++ G+LT PKI +
Sbjct: 62 RLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHS 98
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 46.8 bits (112), Expect = 7e-07
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 9 IGNQPRQLMRRTYENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVE 68
+ + +L R YE P + E +++ L GF KE+IK L ++ E
Sbjct: 8 LQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKA--RVSGQNELIIEAE 65
Query: 69 GRRPLAGGRW-----NQFSELYKIPETCDIN-NINSVFQGGVLTIIMPKIKNNAQK 118
G ++ ++ ++P + I+ ++ GVLTI +P + K
Sbjct: 66 REITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSVFK 121
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 47.3 bits (113), Expect = 7e-07
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 18 RRTYENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPL--AG 75
T + +WK +A + LPG KE++KV D L + E +
Sbjct: 36 SETAAFANARMDWKETPEAHVFKADLPGVKKEEVKV--EVEDGNVLVVSGERTKEKEDKN 93
Query: 76 GRW-------NQFSELYKIPETCDINNINSVFQGGVLTIIMPK 111
+W +F +++ E + + + + GVLT+ +PK
Sbjct: 94 DKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 136
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 45.1 bits (107), Expect = 1e-06
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 33 EDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKIPETCD 92
E D + + + F E++KV D I + K E R+ G +F Y+IP D
Sbjct: 4 EKDRFSVNLDVKHFSPEELKV-KVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVD 62
Query: 93 INNINSVF-QGGVLTIIMPK 111
I S GVLT+ P+
Sbjct: 63 PLTITSSMSSDGVLTVNGPR 82
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 45.2 bits (108), Expect = 2e-06
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 24 FKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA--GGRW--- 78
+ P+ + K E + +L LPG QI+V +D LS++ E + + R+
Sbjct: 3 WVPRVDIKEEVNHFVLYADLPGIDPSQIEVQ---MDKGILSIRGERKSESSTETERFSRI 59
Query: 79 ----NQFSELYKIPETCDINNINSVFQGGVLTIIMPK 111
F + +P++ D + I + + GVL I +PK
Sbjct: 60 ERRYGSFHRRFALPDSADADGITAAGRNGVLEIRIPK 96
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 44.3 bits (105), Expect = 2e-06
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 31 KHEDDASILLVYLPGFVKEQIKVMNTYVDN-ITLSLKVEGRRPLAGGRWNQFSELYKIPE 89
H D + + + F +++ V D + ++ K R+ G F+ Y +P
Sbjct: 3 SHTADRWRVSLDVNHFAPDELTV--KTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPP 60
Query: 90 TCDINNINSVF-QGGVLTIIMPKIK 113
D ++S G LT+ P K
Sbjct: 61 GVDPTQVSSSLSPEGTLTVEAPMPK 85
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 43.6 bits (103), Expect = 5e-06
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 28 SEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSELYKI 87
++ + +L+ + F E+I V D++ + + E R G +F Y++
Sbjct: 4 AQVPTDPGYFSVLLDVKHFSPEEISV-KVVGDHVEVHARHEERPDEHGFIAREFHRRYRL 62
Query: 88 PETCDINNINSVF-QGGVLTIIMPKIKNNAQK 118
P D + S GVL+I A
Sbjct: 63 PPGVDPAAVTSALSPEGVLSIQATPASAQASL 94
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 45.6 bits (107), Expect = 1e-05
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 2/115 (1%)
Query: 1 MAMRPRYTIGNQPRQLMRRTYENFKPKSEWKHEDDASILLVYLPGFVKEQIKV-MNTYVD 59
Q RQL + E + + + L P F + +KV
Sbjct: 200 EKGLAIQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKV 259
Query: 60 NITLSLKVEGRRPLAGGRW-NQFSELYKIPETCDINNINSVFQGGVLTIIMPKIK 113
+ E + A +F + + PE D + + G++ + P K
Sbjct: 260 YVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVVEAPLFK 314
Score = 40.6 bits (94), Expect = 4e-04
Identities = 20/132 (15%), Positives = 36/132 (27%), Gaps = 9/132 (6%)
Query: 1 MAMRPRYTIGNQPRQLMRRTYENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDN 60
A++PR K + + F E+I + N
Sbjct: 78 SAIQPREFHPELEYTQPGELDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITI--KADKN 135
Query: 61 ITLSLKVEGRRPLA---GGRWNQFSELYKIPETCDINNINSVF-QGGVLTIIMPKIKNNA 116
L V ++ +A +P + D N+I + VL I P + N
Sbjct: 136 ---KLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNY 192
Query: 117 QKDAKADATHHE 128
+ +
Sbjct: 193 KAIKLSPEKGLA 204
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 43.2 bits (101), Expect = 3e-05
Identities = 12/72 (16%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 239 ANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDD--------LISEKP 290
A+ ++ E+I K + + ++L+ + K + EK K ++++ + K
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
Query: 291 KDKKHESAFASE 302
++ + AF +
Sbjct: 137 NNRIADKAFYQQ 148
Score = 31.3 bits (70), Expect = 0.32
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 239 ANEEKEKSEAIGKEKPAEVEKLESKEEEEKQK----NDQSEEKRKVEVDD 284
A + + E K K ++E+ ++ E+ +K N +++ + D
Sbjct: 103 AASKVMEQEWREKAKK-DLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Score = 28.2 bits (62), Expect = 3.3
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 27/81 (33%)
Query: 196 QKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPA 255
Q+ D + + A K D E + +E+ EK+
Sbjct: 99 QELDA-----ASKVMEQEWREKAKK----------DLEEWNQRQSEQVEKN--------- 134
Query: 256 EVEKLESKEEEEKQKNDQSEE 276
K+ ++ ++ +
Sbjct: 135 ---KINNRIADKAFYQQPDAD 152
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 42.0 bits (99), Expect = 5e-05
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 13/111 (11%)
Query: 18 RRTYENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLA--- 74
+ D ++ +LPG KE I + TL ++ + +
Sbjct: 49 IQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILN---AVGDTLEIRAKRSPLMITES 105
Query: 75 -------GGRWNQFSELYKIPETCDINNINSVFQGGVLTIIMPKIKNNAQK 118
+ K+P T N ++ F+ GVL++I+PK +++ +K
Sbjct: 106 ERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKK 156
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 37.5 bits (87), Expect = 0.006
Identities = 45/211 (21%), Positives = 88/211 (41%), Gaps = 19/211 (9%)
Query: 113 KNNAQKDAKADATHHETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDS 172
KN Q+ +A ET E E +++E + ++ E S QL +
Sbjct: 894 KNLLQEKLQA-----ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQA 948
Query: 173 QKTA--SLVDDITKQIDESGGETACQKADEMGHAVEASPK-----AAALVDTAAKIHDEI 225
+K + D+ +Q++E E A QK + K + D K+ E
Sbjct: 949 EKKKMQQQMLDLEEQLEEE--EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER 1006
Query: 226 KRVGTDGESAYKIANEEKEKSEAIGKEKP---AEVEKLESK-EEEEKQKNDQSEEKRKVE 281
K + EE+EK++ + K K + + +LE + ++EEK + + + KRK+E
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066
Query: 282 VD-DLISEKPKDKKHESAFASEGLIEGKQQL 311
+ + E+ + + + A L + +++L
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEEL 1097
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.007
Identities = 38/228 (16%), Positives = 68/228 (29%), Gaps = 69/228 (30%)
Query: 47 VKEQIKVMNTYVDN---ITLSLKVEGRRP--LAGGRWNQFSELY---------KIPETCD 92
V++ + N+++ + +SL V G + ++G LY K P D
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISL-VNGAKNLVVSGPP----QSLYGLNLTLRKAKAPSGLD 403
Query: 93 INNI-NS----VFQGGVLTIIMPKIKNNAQKDAKADATHHETSSSQEIAETSTVQEKQRE 147
+ I S F L + P H S + S + K
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASP---------------FH----SHLLVPASDLINKDLV 444
Query: 148 EKNVVEAPSPQKVT---TSTEESTQ-LDSQKTASLVDDIT-KQID-ESGGETACQKADEM 201
+ NV ++ T + L + +VD I + E +
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE--------TTTQF 496
Query: 202 G--HAVEASP-KAAALVDTAAKIHD----EIKRVGT-----DGESAYK 237
H ++ P A+ L + D + GT D + +K
Sbjct: 497 KATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 31.9 bits (72), Expect = 0.37
Identities = 28/150 (18%), Positives = 40/150 (26%), Gaps = 35/150 (23%)
Query: 201 MG-HAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYKI-ANEEKEKSEAIGKEKPAEV- 257
MG + S A + + A + T G S I N + G EK +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKD-----TYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 258 EKLESKEEEEKQKNDQSEEKRKVEVDDLIS----EKPKDKKHESAFASEGLIEGKQQLLV 313
E + E EK E+++ + K + F Q L
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT--------QPALT 1737
Query: 314 NMGTAVL-------------VIVG--LGAY 328
M A G LG Y
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEY 1767
Score = 29.6 bits (66), Expect = 2.1
Identities = 36/264 (13%), Positives = 67/264 (25%), Gaps = 101/264 (38%)
Query: 9 IGNQPRQLM--------RRTYENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDN 60
+ N P L +R EN+ ++ D + + + E +
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENY-SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 61 ITLS-------------------LKVEGRRP----LAG---GRWNQFSELYKIPETCDIN 94
LS LK +G P AG G +++ L
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG---EYAAL---------- 1770
Query: 95 NINSVFQGGVLTIIMPKIKNNAQKDAKADATHHETSSSQEIAETSTVQEKQREEKNVVEA 154
V++I + + + + Q E R ++ A
Sbjct: 1771 ----ASLADVMSI----------ESL-VEVVFYRGMTMQVAVPRD---ELGRSNYGMI-A 1811
Query: 155 PSPQKVTTSTEESTQLDSQKTASLVDDITKQIDESGGETACQKADEMGHAVEA----SP- 209
+P +V S + + + +++ G VE
Sbjct: 1812 INPGRVAASFSQEA----------LQYVVERV-----------GKRTGWLVEIVNYNVEN 1850
Query: 210 -------KAAALVDTAAKIHDEIK 226
AL DT + + IK
Sbjct: 1851 QQYVAAGDLRAL-DTVTNVLNFIK 1873
Score = 29.6 bits (66), Expect = 2.1
Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 46/120 (38%)
Query: 238 IANEEKEKSEAIGKEKPAEVEKLESKEEEEK--QKND---------QSEEKRKVEVDDLI 286
+++ E S+ + +V L E E + ND Q + V+ +LI
Sbjct: 68 VSSLV-EPSKV---GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 287 ---------SEKPKDKKHESAFASEGLIEGKQQLLVNMGTAVLVIVGLGAYLSYTITSFG 337
+++P DKK SA L V G A L I FG
Sbjct: 124 KNYITARIMAKRPFDKKSNSA-----LFRA-----VGEGNAQL----------VAI--FG 161
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 34.5 bits (78), Expect = 0.030
Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 8/124 (6%)
Query: 187 DESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKS 246
++ G + AS + + T + DG +A A+ ++
Sbjct: 40 NDEGFGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEP 99
Query: 247 EAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDD--------LISEKPKDKKHESA 298
E+I K + + ++L+ + K + EK K ++++ + K ++ + A
Sbjct: 100 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 159
Query: 299 FASE 302
F +
Sbjct: 160 FYQQ 163
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 34.8 bits (79), Expect = 0.048
Identities = 40/240 (16%), Positives = 85/240 (35%), Gaps = 16/240 (6%)
Query: 93 INNINSVFQGGVLTIIMPKIKNNAQKDAKADATHHETSSSQEIAETSTVQEKQREEKNVV 152
+ G ++PK ++ A S E + T QR + +
Sbjct: 603 VFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAI 662
Query: 153 EAPSPQKVTTSTEESTQLDSQKTASLVDDITKQIDESGGETACQKADEMGHAVEASPKAA 212
E + + + E+ +L+ + L + K +D+S E A ++ E+ A+ + ++
Sbjct: 663 EITTNSQEAAAKHEAQRLEQEARGRL--ERQKILDQSEAEKARKELLEL-EAMSMAVEST 719
Query: 213 ALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKND 272
A+ E R+ +G + K K++A+ E AE+E+++ E E
Sbjct: 720 GNAKAEAESRAEAARIEGEGS-----VLQAKLKAQALAIETEAELERVKKVREMELIYAR 774
Query: 273 Q--------SEEKRKVEVDDLISEKPKDKKHESAFASEGLIEGKQQLLVNMGTAVLVIVG 324
+++ VE + E + +LL ++G +I
Sbjct: 775 AQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLKSTLITD 834
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 33.9 bits (78), Expect = 0.084
Identities = 21/156 (13%), Positives = 55/156 (35%), Gaps = 17/156 (10%)
Query: 142 QEKQREEKNVVEAPSPQKVTTSTEESTQLDSQKTASLVDDITKQIDE-SGGETACQKADE 200
+ E +++ +K+ +E L + +L + + ++ + ++E
Sbjct: 921 KLHIGLENKIMQLQ--RKIDEQNKEYKSLLEKM-NNLEITYSTETEKLRSDVERLRMSEE 977
Query: 201 MGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKL 260
+ +L + AK+ E+ + EK+ E + E E+L
Sbjct: 978 EAKNATN--RVLSLQEEIAKLRKELHQ-----------TQTEKKTIEEWADKYKHETEQL 1024
Query: 261 ESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKKHE 296
S+ +E+ +E+ + D E + + +
Sbjct: 1025 VSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK 1060
Score = 31.2 bits (71), Expect = 0.49
Identities = 24/173 (13%), Positives = 66/173 (38%), Gaps = 7/173 (4%)
Query: 116 AQKDAKADATHHETSSSQ---EIAE-TSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLD 171
K ++ +I + + E+ +E K+++E + ++T STE
Sbjct: 908 KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967
Query: 172 SQKTASLVDDITKQIDESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTD 231
+ + ++ K + A + + + + A K E +++ ++
Sbjct: 968 DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027
Query: 232 GESAYKIANEEKEKSEAIGKEKPAEVEKLESK---EEEEKQKNDQSEEKRKVE 281
+ + EKE+ ++ E+ + K EE ++ + D ++E+ + +
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 31.2 bits (71), Expect = 0.54
Identities = 10/62 (16%), Positives = 23/62 (37%)
Query: 237 KIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKKHE 296
KI E+ + + ++ +L+ K +E+ ++ EK +E K +
Sbjct: 910 KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969
Query: 297 SA 298
Sbjct: 970 ER 971
>2di4_A Zinc protease, cell division protein FTSH homolog;
metalloproteinase, hexamer-ring, hydrolase; 2.79A
{Aquifex aeolicus} SCOP: a.269.1.1
Length = 238
Score = 31.8 bits (73), Expect = 0.26
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 216 DTAAKIHDEIKRVGTDG-ESAYKIANEEKEKSEAIGKEKPAEVEKLESKE---------- 264
D +I +E+KR+ T+ E A I E KE +A+ +K E E + +E
Sbjct: 146 DLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAV-VKKLLEKETITCEEFVEVFKLYGI 204
Query: 265 ---EEEKQKNDQSEEKRKVEVDDLISEKPKDK 293
++ K++ ++++ E +L SE+ K++
Sbjct: 205 ELKDKCKKEELFDKDRKSEENKELKSEEVKEE 236
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 31.0 bits (71), Expect = 0.51
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 210 KAAALVD-TAAKIHDEIKRVGTD-GESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEE 267
KA L+D +K+ + E K+ KEK A+ ++ + L E+
Sbjct: 373 KAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRL 432
Query: 268 KQKNDQSEEKRKVEVDDLISE 288
+++ + +++ K + SE
Sbjct: 433 REQVEDTKKSWKEKQGQENSE 453
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 30.6 bits (70), Expect = 0.76
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 216 DTAAKIHDEIKRVGTDG-ESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQS 274
+ A+KI +E+K++ T+ E A +I + +++ + I E E E +E E +
Sbjct: 403 EVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNI-VEILLEKETIEGDELRRILSEEFE 461
Query: 275 EEKRKVEVDD 284
+ ++
Sbjct: 462 KVVEAAALEH 471
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.99
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 254 PAEVEKLESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKKHESAFASEGLIEGKQQLLV 313
A V+ + K+ ++ K+ S+E E+D +I K F + KQ+ +V
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKE----EIDHIIMSKDAVSGTLRLF---WTLLSKQEEMV 79
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 30.2 bits (69), Expect = 1.2
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 210 KAAALVDTA-AKIHDEIKRVGTD-GESAYKIANEEKEKSEAIGK---EKPAEV----EKL 260
KA L+D A +K+ + E K+ KEK A+ EK A + ++L
Sbjct: 373 KAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRL 432
Query: 261 ESKEEEEKQKNDQSEEKRKVEVDD 284
+ E+ K+ + + + EV
Sbjct: 433 REQVEDTKKSWKEKQGQENSEVTV 456
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 28.5 bits (64), Expect = 1.6
Identities = 11/72 (15%), Positives = 26/72 (36%)
Query: 205 VEASPKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKE 264
VEA + ++T + +D + R K++ +E+ + + +
Sbjct: 64 VEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADD 123
Query: 265 EEEKQKNDQSEE 276
E ++ EE
Sbjct: 124 AEAGDSEEEEEE 135
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 29.5 bits (65), Expect = 1.7
Identities = 23/186 (12%), Positives = 55/186 (29%), Gaps = 23/186 (12%)
Query: 126 HHETSSSQEIAETSTVQEKQREEKNVVEAPSPQKVTTSTEESTQLDSQKTASLVDDITKQ 185
HH + + + + + V+ +E ST ++
Sbjct: 3 HHHHHHGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNE--------- 53
Query: 186 IDESGGETACQKADEMGHAVEASPKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEK 245
GE A + E V + + A+ A + + A + +EK
Sbjct: 54 -----GEHARENKLEKAEGVATASETASPASNEAATTETAEAAS---------AAKPEEK 99
Query: 246 SEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKKHESAFASEGLI 305
+ + E P+ K +S +E E + ++ + + + + + L
Sbjct: 100 ASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLK 159
Query: 306 EGKQQL 311
+ +
Sbjct: 160 PKEIKF 165
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 28.5 bits (64), Expect = 3.5
Identities = 16/116 (13%), Positives = 40/116 (34%), Gaps = 8/116 (6%)
Query: 222 HDEIK---RVGTDGESAYKIANEE---KEKSEAIGKEK--PAEVEKLESKEEEEKQKNDQ 273
+ ++ + +G+++YKI + K+ S + E L + + E+
Sbjct: 102 NKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQS 161
Query: 274 SEEKRKVEVDDLISEKPKDKKHESAFASEGLIEGKQQLLVNMGTAVLVIVGLGAYL 329
E ++ + S + K + E E L + + + N + +
Sbjct: 162 PVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPG 217
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger,
toprim, walker B ATP binding motif; 2.50A {Deinococcus
radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Length = 228
Score = 27.9 bits (63), Expect = 4.2
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 57 YVDNITLSLKVEGRRPL 73
Y D +TL + GR+ +
Sbjct: 180 YTDEVTLGRALTGRQTV 196
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 28.1 bits (62), Expect = 4.2
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 228 VGTDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEK 277
+ D A + N E G K AE + + ++EE++ K +
Sbjct: 288 ITNDEAYAEEFGN------ETWGVTKAAEKQMKDKQDEEQRLKLEHHHHH 331
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 27.9 bits (63), Expect = 4.3
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 257 VEKLESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKKHE 296
K E+ EE +++ EEK + + + E+ ++KK +
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPK 254
Score = 27.2 bits (61), Expect = 7.2
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 251 KEKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKKH 295
K + E E + +E++++ E + E ++ + K +K
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 27.6 bits (61), Expect = 4.9
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 223 DEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEE 276
+ + D E++ +E E+ E E E EE+ + + +EE
Sbjct: 192 TQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEE 245
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 27.9 bits (62), Expect = 5.7
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 235 AYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDDLISE 288
A + ++K E + E + E +E E K + + + E DDL+S
Sbjct: 391 AKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSA 444
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 27.6 bits (62), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 255 AEVEKLESKEEEEKQKNDQSEEKRKVEVD 283
E+EK+++K EE++ +N + KR E D
Sbjct: 10 KEMEKMKNKREEKRAQNSELRIKRAQEYD 38
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 27.9 bits (62), Expect = 6.1
Identities = 16/104 (15%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 214 LVDTAAKIHDEIKRVGTDGESAYKIANEEKEKS-EAIGKEK-PAEVEKLESKEEEEK--- 268
L DT A++ +++ + NE+ + + + +++ AE+++ +++E + +
Sbjct: 1929 LRDTEAQV-KDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDV 1987
Query: 269 QKNDQSEEKRKVEVDDLISEKPKDKKHESAFASEGLIEGKQQLL 312
+ + + +K K D +E + E E K +
Sbjct: 1988 RNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQD 2031
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG,
structure initiative, PSI, joint center for structural
GENO translation; 1.70A {Thermotoga maritima} SCOP:
d.58.14.1
Length = 140
Score = 26.6 bits (59), Expect = 6.5
Identities = 7/72 (9%), Positives = 23/72 (31%), Gaps = 14/72 (19%)
Query: 205 VEASPKAAALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEAIGKEKPAEVEKLESKE 264
+ ++ ++ EI R ++ ++K + ++ ++
Sbjct: 83 FRCDGQNLQELENFYRVTPEIIR--------WQTFRRFDL------EKKERKAQREKAAA 128
Query: 265 EEEKQKNDQSEE 276
E + SE+
Sbjct: 129 EATESSEGGSED 140
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 27.9 bits (61), Expect = 6.8
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 2/95 (2%)
Query: 223 DEIKRVGTDGE--SAYKIANEEKEKSEAIGKEKPAEVEKLESKEEEEKQKNDQSEEKRKV 280
D IK E A+K+ +EK++ K + + R
Sbjct: 410 DTIKEEPLSKEETEAFKVQLKEKKRDRNKKILLVKRESKKLANGNAIIDDTNGERAMRNQ 469
Query: 281 EVDDLISEKPKDKKHESAFASEGLIEGKQQLLVNM 315
++ H + E + L+N+
Sbjct: 470 DILVENVNGVPPIDHIMGGDEDDDEEEENDNLLNL 504
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 7.6
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 25/55 (45%)
Query: 252 EKPAEVEKLESKEEEEKQKNDQSEEKRKVEVDDLISEKPKDKKHESAFASEGLIE 306
EK ++KL++ K+ DD P A A + +E
Sbjct: 18 EK-QALKKLQA--------------SLKLYADD---SAP-------ALAIKATME 47
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 27.2 bits (61), Expect = 8.1
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 11/85 (12%)
Query: 214 LVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSE---------AIGKEKPAEVEKLESKE 264
L D + +I++ TD + KI K + A+ KE + +
Sbjct: 216 LDDPKEVVVKKIRQATTDSFN--KIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGN 273
Query: 265 EEEKQKNDQSEEKRKVEVDDLISEK 289
+ E + +S K + +
Sbjct: 274 DLEAYFSTKSYLDLKNALTEATVNL 298
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 27.1 bits (61), Expect = 9.5
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 206 EASPKAA-ALVDTAAKIHDEIKRVGTDGESAYKIANEEKEKSEA 248
+ + K L++ I +I + TD E+ +IA + + K+
Sbjct: 206 DDNRKNVITLLEDPKSIIKKINKAQTDAETPPRIAYDVENKAGI 249
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 27.2 bits (60), Expect = 9.6
Identities = 8/53 (15%), Positives = 19/53 (35%)
Query: 1 MAMRPRYTIGNQPRQLMRRTYENFKPKSEWKHEDDASILLVYLPGFVKEQIKV 53
+ + L + + + + ++LPGF K+Q+K+
Sbjct: 271 VPDVTKGDWQPLIDALPNFVEQAEQAPKPITIDTHNRQVRLFLPGFDKKQVKL 323
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.307 0.125 0.335
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,733,898
Number of extensions: 274108
Number of successful extensions: 690
Number of sequences better than 10.0: 1
Number of HSP's gapped: 599
Number of HSP's successfully gapped: 106
Length of query: 339
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 245
Effective length of database: 4,077,219
Effective search space: 998918655
Effective search space used: 998918655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.9 bits)