RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 019529
         (339 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 11  NQPRQLMRRTYENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVE-- 68
                    T      + +WK   +A +    LPG  KE++KV     + + +S +    
Sbjct: 28  PAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKE 87

Query: 69  -----GRRPLAGGRWNQFSELYKIPETCDINNINSVFQGGVLTIIMPKIKNNAQK 118
                 +         +F   +++ E   +  + +  + GVLT+ +PK +    +
Sbjct: 88  KEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPE 142


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 13/103 (12%)

Query: 26  PKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSLKVEGRRPLAGGRWNQFSEL- 84
                   D    ++ +LPG  KE I +        TL ++ +    +            
Sbjct: 11  MPISIIEGDQHIKVIAWLPGVNKEDIIL---NAVGDTLEIRAKRSPLMITESERIIYSEI 67

Query: 85  ---------YKIPETCDINNINSVFQGGVLTIIMPKIKNNAQK 118
                     K+P T    N ++ F+ GVL++I+PK +++ +K
Sbjct: 68  PEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKK 110


>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A
           {Arthrobacter globiformis [TaxId: 1665]}
          Length = 413

 Score = 28.6 bits (63), Expect = 1.2
 Identities = 9/64 (14%), Positives = 14/64 (21%)

Query: 6   RYTIGNQPRQLMRRTYENFKPKSEWKHEDDASILLVYLPGFVKEQIKVMNTYVDNITLSL 65
           R +    P     R + N           D   L     G        +   +     S+
Sbjct: 223 RISATGNPNDGATRDWGNGAGVHPENAVLDGGFLEFVRLGVKAPADPYVADSLAETDASI 282

Query: 66  KVEG 69
             E 
Sbjct: 283 SQET 286


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.307    0.125    0.335 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,112,655
Number of extensions: 48283
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 21
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.7 bits)