Query 019530
Match_columns 339
No_of_seqs 393 out of 1669
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 03:14:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nk2_P Homeobox protein VND; h 99.8 1.2E-19 4.1E-24 140.6 7.0 68 162-229 6-73 (77)
2 2dmt_A Homeobox protein BARH-l 99.8 1.4E-19 4.9E-24 141.1 6.4 63 162-224 14-76 (80)
3 2kt0_A Nanog, homeobox protein 99.8 1.4E-19 4.9E-24 142.0 6.3 64 162-225 19-82 (84)
4 2da3_A Alpha-fetoprotein enhan 99.8 1.3E-19 4.4E-24 140.8 5.9 63 162-224 14-76 (80)
5 2vi6_A Homeobox protein nanog; 99.8 1.4E-19 4.9E-24 134.4 4.6 61 164-224 2-62 (62)
6 2h1k_A IPF-1, pancreatic and d 99.8 2.3E-19 8E-24 133.7 5.7 61 164-224 2-62 (63)
7 2cue_A Paired box protein PAX6 99.8 4.6E-19 1.6E-23 138.3 7.4 63 163-225 5-67 (80)
8 2cra_A Homeobox protein HOX-B1 99.8 2.1E-19 7.1E-24 136.7 5.3 62 163-224 5-66 (70)
9 2dmq_A LIM/homeobox protein LH 99.8 3.3E-19 1.1E-23 138.7 6.4 65 163-227 5-69 (80)
10 2dmu_A Homeobox protein goosec 99.8 3.5E-19 1.2E-23 135.3 6.4 62 164-225 6-67 (70)
11 2da2_A Alpha-fetoprotein enhan 99.8 3.7E-19 1.3E-23 135.1 5.7 63 163-225 5-67 (70)
12 1puf_A HOX-1.7, homeobox prote 99.8 9.2E-19 3.2E-23 135.6 8.0 64 163-226 11-74 (77)
13 2dms_A Homeobox protein OTX2; 99.8 4.1E-19 1.4E-23 138.4 5.9 64 163-226 5-68 (80)
14 2e1o_A Homeobox protein PRH; D 99.8 7.1E-19 2.4E-23 133.7 6.7 61 164-224 6-66 (70)
15 1zq3_P PRD-4, homeotic bicoid 99.8 6.5E-19 2.2E-23 133.3 6.4 63 164-226 1-63 (68)
16 2djn_A Homeobox protein DLX-5; 99.8 4E-19 1.4E-23 135.1 4.9 62 163-224 5-66 (70)
17 3a01_A Homeodomain-containing 99.8 6.8E-19 2.3E-23 141.3 6.4 67 163-229 15-81 (93)
18 2hdd_A Protein (engrailed home 99.8 5.6E-19 1.9E-23 130.7 5.4 58 165-222 3-60 (61)
19 1wh5_A ZF-HD homeobox family p 99.8 5.5E-19 1.9E-23 138.4 5.5 60 163-222 15-78 (80)
20 1ig7_A Homeotic protein MSX-1; 99.8 8.8E-19 3E-23 128.2 6.1 57 166-222 1-57 (58)
21 2da1_A Alpha-fetoprotein enhan 99.8 4.9E-19 1.7E-23 134.4 4.9 63 163-225 5-67 (70)
22 1fjl_A Paired protein; DNA-bin 99.8 1.1E-18 3.8E-23 136.3 6.8 63 163-225 16-78 (81)
23 2da4_A Hypothetical protein DK 99.7 5E-19 1.7E-23 137.9 4.2 62 163-224 6-71 (80)
24 1b8i_A Ultrabithorax, protein 99.7 9E-19 3.1E-23 137.1 5.4 61 164-224 19-79 (81)
25 1yz8_P Pituitary homeobox 2; D 99.7 5E-19 1.7E-23 133.9 3.7 63 164-226 2-64 (68)
26 1ahd_P Antennapedia protein mu 99.7 8.7E-19 3E-23 132.7 4.9 61 165-225 2-62 (68)
27 1bw5_A ISL-1HD, insulin gene e 99.7 8.3E-19 2.8E-23 131.8 4.7 61 164-224 2-62 (66)
28 1jgg_A Segmentation protein EV 99.7 1.3E-18 4.5E-23 128.4 5.6 58 166-223 2-59 (60)
29 2l7z_A Homeobox protein HOX-A1 99.7 1.2E-18 4E-23 133.7 5.5 62 164-225 6-67 (73)
30 3rkq_A Homeobox protein NKX-2. 99.7 1.4E-18 4.7E-23 126.6 5.6 57 165-221 2-58 (58)
31 2r5y_A Homeotic protein sex co 99.7 1.1E-18 3.8E-23 138.4 5.1 62 163-224 26-87 (88)
32 1ftt_A TTF-1 HD, thyroid trans 99.7 1.6E-18 5.4E-23 131.2 5.5 61 165-225 2-62 (68)
33 1uhs_A HOP, homeodomain only p 99.7 2.4E-18 8.1E-23 131.5 6.2 59 166-224 2-61 (72)
34 2m0c_A Homeobox protein arista 99.7 2.2E-18 7.6E-23 132.1 6.1 63 163-225 7-69 (75)
35 2k40_A Homeobox expressed in E 99.7 1.5E-18 5E-23 130.8 4.8 62 165-226 1-62 (67)
36 1wh7_A ZF-HD homeobox family p 99.7 1.2E-18 4.2E-23 136.5 4.5 59 163-222 15-78 (80)
37 2hi3_A Homeodomain-only protei 99.7 3.4E-18 1.2E-22 131.1 6.4 60 165-224 2-62 (73)
38 2ecc_A Homeobox and leucine zi 99.7 2.9E-18 9.8E-23 133.3 5.8 59 167-225 5-63 (76)
39 2da5_A Zinc fingers and homeob 99.7 2.8E-18 9.6E-23 132.4 5.5 61 166-226 8-68 (75)
40 3a02_A Homeobox protein arista 99.7 2.6E-18 8.8E-23 126.8 4.8 57 168-224 2-58 (60)
41 1b72_A Protein (homeobox prote 99.7 3.2E-18 1.1E-22 138.2 5.6 63 163-225 32-94 (97)
42 1akh_A Protein (mating-type pr 99.7 2.7E-18 9.2E-23 126.8 4.5 58 164-221 4-61 (61)
43 3nar_A ZHX1, zinc fingers and 99.7 3E-18 1E-22 138.1 5.2 62 164-225 24-85 (96)
44 1x2n_A Homeobox protein pknox1 99.7 5.5E-18 1.9E-22 129.7 6.2 63 163-225 5-70 (73)
45 3a03_A T-cell leukemia homeobo 99.7 4.8E-18 1.6E-22 123.9 5.4 54 170-223 2-55 (56)
46 1puf_B PRE-B-cell leukemia tra 99.7 6.1E-18 2.1E-22 129.5 5.9 64 166-229 2-68 (73)
47 2dn0_A Zinc fingers and homeob 99.7 3.6E-18 1.2E-22 131.9 4.6 61 165-225 8-68 (76)
48 2ly9_A Zinc fingers and homeob 99.7 5.3E-18 1.8E-22 130.0 5.5 63 164-226 5-67 (74)
49 2cuf_A FLJ21616 protein; homeo 99.7 1.1E-17 3.6E-22 134.6 6.1 63 163-225 5-82 (95)
50 1b72_B Protein (PBX1); homeodo 99.7 1.3E-17 4.5E-22 131.6 6.5 62 166-227 2-66 (87)
51 2ecb_A Zinc fingers and homeob 99.7 5.5E-18 1.9E-22 135.5 3.9 58 170-227 16-73 (89)
52 1du6_A PBX1, homeobox protein 99.7 7.7E-18 2.6E-22 125.6 3.5 58 165-222 3-63 (64)
53 1k61_A Mating-type protein alp 99.7 2.4E-17 8.2E-22 121.4 5.5 56 168-223 1-59 (60)
54 2dmn_A Homeobox protein TGIF2L 99.7 2.7E-17 9.4E-22 129.3 6.2 63 164-226 6-71 (83)
55 2cqx_A LAG1 longevity assuranc 99.7 8.1E-18 2.8E-22 129.2 3.0 58 166-223 9-67 (72)
56 1au7_A Protein PIT-1, GHF-1; c 99.7 2.4E-17 8.3E-22 142.6 4.7 61 163-223 85-145 (146)
57 2dmp_A Zinc fingers and homeob 99.7 7E-17 2.4E-21 128.6 6.9 58 168-225 16-73 (89)
58 1mnm_C Protein (MAT alpha-2 tr 99.7 4.7E-17 1.6E-21 128.7 5.8 59 163-221 25-86 (87)
59 1le8_B Mating-type protein alp 99.7 3.3E-17 1.1E-21 128.7 4.6 60 166-225 3-65 (83)
60 2l9r_A Homeobox protein NKX-3. 99.7 2.7E-17 9.1E-22 125.6 3.0 57 171-227 10-66 (69)
61 1e3o_C Octamer-binding transcr 99.7 4.8E-17 1.6E-21 142.6 4.9 60 164-223 100-159 (160)
62 2da6_A Hepatocyte nuclear fact 99.7 1.4E-16 4.7E-21 130.2 7.1 63 163-225 4-87 (102)
63 2xsd_C POU domain, class 3, tr 99.7 3.8E-17 1.3E-21 143.9 3.9 63 163-225 97-159 (164)
64 1wi3_A DNA-binding protein SAT 99.6 1.4E-16 4.8E-21 120.8 5.7 58 164-221 6-64 (71)
65 3nau_A Zinc fingers and homeob 99.6 1.2E-16 4E-21 120.8 5.2 53 172-224 11-63 (66)
66 3d1n_I POU domain, class 6, tr 99.6 1.4E-16 4.6E-21 138.3 6.0 60 163-222 91-150 (151)
67 1x2m_A LAG1 longevity assuranc 99.6 6.3E-17 2.1E-21 121.8 2.8 49 174-222 9-58 (64)
68 2e19_A Transcription factor 8; 99.6 1.4E-16 4.7E-21 119.7 4.4 55 169-223 7-61 (64)
69 1lfb_A Liver transcription fac 99.6 9E-17 3.1E-21 130.8 3.6 63 163-225 7-90 (99)
70 3l1p_A POU domain, class 5, tr 99.6 3.1E-16 1.1E-20 136.8 5.0 61 163-223 94-154 (155)
71 3k2a_A Homeobox protein MEIS2; 99.6 4.4E-16 1.5E-20 117.8 4.5 61 170-230 3-66 (67)
72 2d5v_A Hepatocyte nuclear fact 99.6 3.9E-16 1.3E-20 136.8 4.3 63 162-224 94-156 (164)
73 1ic8_A Hepatocyte nuclear fact 99.4 3.3E-14 1.1E-18 128.4 1.9 60 163-222 113-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.4 2.1E-13 7.1E-18 108.8 5.7 55 170-224 10-67 (89)
75 2da7_A Zinc finger homeobox pr 99.4 3.3E-13 1.1E-17 102.8 4.3 47 174-220 14-60 (71)
76 1mh3_A Maltose binding-A1 home 99.3 5.8E-13 2E-17 129.0 1.9 56 166-221 366-421 (421)
77 2h8r_A Hepatocyte nuclear fact 99.3 1.5E-12 5.1E-17 119.5 4.4 59 163-221 140-219 (221)
78 2nzz_A Penetratin conjugated G 98.9 1.1E-10 3.8E-15 78.5 -1.3 25 207-231 1-25 (37)
79 2ys9_A Homeobox and leucine zi 95.2 0.01 3.5E-07 44.9 2.7 41 175-215 16-56 (70)
80 1hjb_A Ccaat/enhancer binding 90.6 0.48 1.7E-05 37.1 5.7 41 217-257 29-73 (87)
81 2jn6_A Protein CGL2762, transp 89.3 0.1 3.6E-06 40.3 1.0 44 169-216 3-47 (97)
82 1gu4_A CAAT/enhancer binding p 79.3 3.7 0.00013 31.4 5.6 39 217-255 29-71 (78)
83 2glo_A Brinker CG9653-PA; prot 74.3 2.7 9.4E-05 29.3 3.4 45 169-214 3-47 (59)
84 1hlv_A CENP-B, major centromer 73.8 4 0.00014 32.5 4.8 50 167-219 3-52 (131)
85 2elh_A CG11849-PA, LD40883P; s 70.1 6.9 0.00024 29.4 5.1 44 166-214 17-60 (87)
86 3hug_A RNA polymerase sigma fa 64.4 7.6 0.00026 29.3 4.3 47 171-222 37-83 (92)
87 1ci6_A Transcription factor AT 60.8 22 0.00074 25.7 5.9 28 228-255 31-58 (63)
88 1t2k_D Cyclic-AMP-dependent tr 59.1 28 0.00094 24.8 6.2 27 228-254 30-56 (61)
89 2yy0_A C-MYC-binding protein; 59.0 14 0.00048 26.0 4.5 30 226-255 18-47 (53)
90 2oxj_A Hybrid alpha/beta pepti 58.5 16 0.00056 23.5 4.2 26 232-257 6-31 (34)
91 1jko_C HIN recombinase, DNA-in 57.2 3.6 0.00012 26.7 1.1 42 171-217 5-46 (52)
92 1s7o_A Hypothetical UPF0122 pr 55.7 35 0.0012 27.1 7.0 48 171-223 22-69 (113)
93 1uii_A Geminin; human, DNA rep 55.6 28 0.00095 26.9 5.9 33 225-257 44-76 (83)
94 1tc3_C Protein (TC3 transposas 55.3 8.9 0.0003 24.2 2.8 40 171-215 5-44 (51)
95 2o8x_A Probable RNA polymerase 54.1 7.9 0.00027 27.0 2.6 47 171-222 15-61 (70)
96 1gu4_A CAAT/enhancer binding p 53.9 27 0.00091 26.6 5.6 34 221-254 30-63 (78)
97 2dgc_A Protein (GCN4); basic d 53.2 28 0.00097 25.2 5.5 30 227-256 30-59 (63)
98 2wt7_A Proto-oncogene protein 53.1 39 0.0013 24.2 6.2 25 230-254 26-50 (63)
99 1je8_A Nitrate/nitrite respons 53.0 16 0.00056 27.0 4.3 47 170-222 20-66 (82)
100 1p4w_A RCSB; solution structur 52.6 21 0.00073 27.7 5.1 47 169-221 32-78 (99)
101 1iuf_A Centromere ABP1 protein 51.7 17 0.00059 29.9 4.7 52 166-217 6-61 (144)
102 3c57_A Two component transcrip 50.9 12 0.0004 28.6 3.3 46 171-222 27-72 (95)
103 1fse_A GERE; helix-turn-helix 50.4 16 0.00056 25.6 3.8 48 169-222 9-56 (74)
104 1x3u_A Transcriptional regulat 49.7 13 0.00044 26.6 3.2 46 171-222 16-61 (79)
105 3m48_A General control protein 49.4 25 0.00085 22.6 3.9 26 232-257 5-30 (33)
106 1hjb_A Ccaat/enhancer binding 48.9 38 0.0013 26.2 5.9 50 222-271 31-81 (87)
107 1ci6_A Transcription factor AT 48.6 38 0.0013 24.4 5.5 29 226-254 22-50 (63)
108 1xsv_A Hypothetical UPF0122 pr 46.0 47 0.0016 26.1 6.3 48 171-223 25-72 (113)
109 2wt7_B Transcription factor MA 45.7 45 0.0015 26.0 5.9 31 225-255 53-83 (90)
110 3s9g_A Protein hexim1; cyclin 45.6 49 0.0017 26.4 6.0 30 225-254 63-92 (104)
111 2rgt_A Fusion of LIM/homeobox 45.4 0.59 2E-05 39.9 -5.6 30 163-192 134-163 (169)
112 3mzy_A RNA polymerase sigma-H 45.3 21 0.00071 28.4 4.1 46 171-222 109-154 (164)
113 2lv7_A Calcium-binding protein 45.1 31 0.001 26.4 4.9 47 168-214 26-79 (100)
114 1t6f_A Geminin; coiled-coil, c 45.0 34 0.0012 22.3 4.1 29 227-255 7-35 (37)
115 1t2k_D Cyclic-AMP-dependent tr 44.7 58 0.002 23.0 5.9 29 227-255 22-50 (61)
116 2wt7_A Proto-oncogene protein 44.3 58 0.002 23.3 5.9 34 223-256 26-59 (63)
117 2rnj_A Response regulator prot 44.1 22 0.00075 26.6 3.8 47 170-222 28-74 (91)
118 1dh3_A Transcription factor CR 43.8 49 0.0017 23.2 5.3 28 228-255 23-50 (55)
119 2x7l_M HIV REV; nuclear export 41.6 19 0.00065 29.4 3.2 38 177-228 15-52 (115)
120 1jnm_A Proto-oncogene C-JUN; B 40.9 33 0.0011 24.5 4.1 26 229-254 24-49 (62)
121 1jnm_A Proto-oncogene C-JUN; B 40.3 61 0.0021 23.0 5.5 33 223-255 25-57 (62)
122 1dip_A Delta-sleep-inducing pe 39.5 1.1E+02 0.0037 23.2 6.8 33 226-258 14-46 (78)
123 2p7v_B Sigma-70, RNA polymeras 39.5 19 0.00066 25.3 2.7 49 171-222 5-55 (68)
124 1gd2_E Transcription factor PA 38.7 44 0.0015 24.8 4.6 31 224-254 33-63 (70)
125 3lph_A Protein REV; helix-loop 36.8 20 0.00068 27.0 2.4 38 177-228 18-55 (72)
126 3i5g_B Myosin regulatory light 36.7 53 0.0018 26.6 5.4 42 167-208 5-51 (153)
127 3c3f_A Alpha/beta peptide with 36.5 59 0.002 20.9 4.2 26 232-257 6-31 (34)
128 1tty_A Sigma-A, RNA polymerase 36.4 34 0.0012 25.4 3.8 49 171-222 18-68 (87)
129 2rn7_A IS629 ORFA; helix, all 35.6 32 0.0011 26.3 3.6 47 169-215 4-53 (108)
130 1wlq_A Geminin; coiled-coil; 2 35.5 72 0.0025 24.6 5.4 31 226-256 37-67 (83)
131 3c3g_A Alpha/beta peptide with 34.2 75 0.0026 20.3 4.4 26 232-257 5-30 (33)
132 1l8d_A DNA double-strand break 34.1 73 0.0025 24.7 5.6 12 271-282 47-58 (112)
133 1ku3_A Sigma factor SIGA; heli 33.6 38 0.0013 24.0 3.6 48 171-221 10-59 (73)
134 3m9b_A Proteasome-associated A 33.3 60 0.0021 29.9 5.5 49 206-254 47-95 (251)
135 1nkp_A C-MYC, MYC proto-oncoge 32.8 68 0.0023 24.5 5.0 34 221-254 53-86 (88)
136 3gpv_A Transcriptional regulat 32.1 1.3E+02 0.0043 24.8 7.1 71 169-254 52-122 (148)
137 1q06_A Transcriptional regulat 31.5 1.3E+02 0.0043 24.4 6.8 73 169-256 36-108 (135)
138 3gp4_A Transcriptional regulat 31.3 2E+02 0.0068 23.5 8.1 34 169-215 38-71 (142)
139 2wvr_A Geminin; DNA replicatio 29.8 93 0.0032 27.8 5.9 31 226-256 114-144 (209)
140 2dgc_A Protein (GCN4); basic d 29.7 65 0.0022 23.2 4.2 27 225-251 35-61 (63)
141 1gd2_E Transcription factor PA 29.1 1.1E+02 0.0038 22.6 5.4 42 213-254 14-56 (70)
142 1rp3_A RNA polymerase sigma fa 28.9 31 0.0011 29.3 2.7 47 171-222 187-233 (239)
143 1nlw_A MAD protein, MAX dimeri 28.3 80 0.0028 23.7 4.7 18 237-254 57-74 (80)
144 1q08_A Zn(II)-responsive regul 27.7 1.3E+02 0.0045 22.4 5.9 60 195-255 8-67 (99)
145 3ulq_B Transcriptional regulat 27.5 62 0.0021 24.4 4.0 48 168-221 26-73 (90)
146 1kd8_B GABH BLL, GCN4 acid bas 27.5 1E+02 0.0034 20.1 4.2 26 232-257 6-31 (36)
147 1or7_A Sigma-24, RNA polymeras 27.1 55 0.0019 26.9 3.9 47 171-222 140-186 (194)
148 2pmy_A RAS and EF-hand domain- 26.9 30 0.001 25.2 2.0 45 170-214 19-68 (91)
149 2yy0_A C-MYC-binding protein; 26.8 78 0.0027 22.1 4.0 26 225-250 24-49 (53)
150 2bni_A General control protein 26.7 1E+02 0.0034 19.9 4.1 25 232-256 6-30 (34)
151 1fi6_A EH domain protein REPS1 26.5 40 0.0014 24.9 2.7 44 171-214 2-50 (92)
152 2jpc_A SSRB; DNA binding prote 26.4 24 0.00084 23.8 1.3 27 196-222 17-43 (61)
153 1uo4_A General control protein 24.4 1.3E+02 0.0044 19.3 4.3 25 233-257 7-31 (34)
154 2x48_A CAG38821; archeal virus 24.0 42 0.0014 22.2 2.1 39 171-214 13-53 (55)
155 2q1z_A RPOE, ECF SIGE; ECF sig 24.0 39 0.0013 27.6 2.4 46 172-222 136-181 (184)
156 2q0o_A Probable transcriptiona 23.9 50 0.0017 28.8 3.2 47 169-221 173-219 (236)
157 2vz4_A Tipal, HTH-type transcr 23.7 1.6E+02 0.0054 22.6 5.9 66 169-255 37-102 (108)
158 3hh0_A Transcriptional regulat 23.4 1.7E+02 0.0057 24.1 6.2 68 169-254 40-107 (146)
159 1nkp_B MAX protein, MYC proto- 23.1 99 0.0034 23.0 4.3 18 237-254 57-74 (83)
160 1c07_A Protein (epidermal grow 22.8 50 0.0017 24.5 2.6 43 172-214 4-51 (95)
161 1u78_A TC3 transposase, transp 22.8 60 0.002 25.3 3.2 42 170-216 5-46 (141)
162 3t72_q RNA polymerase sigma fa 21.7 1.6E+02 0.0054 22.7 5.4 51 171-222 19-69 (99)
163 1go4_E MAD1 (mitotic arrest de 21.3 1.1E+02 0.0038 24.2 4.4 28 227-254 12-39 (100)
164 2xi8_A Putative transcription 20.8 24 0.00083 23.7 0.4 23 195-217 17-39 (66)
165 3clo_A Transcriptional regulat 20.7 1E+02 0.0035 27.2 4.7 48 170-223 196-243 (258)
166 1r8d_A Transcription activator 20.5 2.6E+02 0.0088 21.4 6.5 66 169-255 38-103 (109)
167 1kd8_A GABH AIV, GCN4 acid bas 20.3 1.4E+02 0.0049 19.3 3.9 26 232-257 6-31 (36)
No 1
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.79 E-value=1.2e-19 Score=140.58 Aligned_cols=68 Identities=32% Similarity=0.528 Sum_probs=62.1
Q ss_pred ccCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhhhhh
Q 019530 162 ENGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDC 229 (339)
Q Consensus 162 ~~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~~~~ 229 (339)
..+.+|.|++|+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.+...+.
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~~ 73 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGY 73 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccccC
Confidence 34567789999999999999999999999999999999999999999999999999999987765543
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=141.13 Aligned_cols=63 Identities=29% Similarity=0.421 Sum_probs=58.9
Q ss_pred ccCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 162 ENGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 162 ~~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
..+.+|+|+.|+.+|+.+||..|..++||+..+|.+||..|+|+++||+|||||||+|+|+..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 345677899999999999999999999999999999999999999999999999999999764
No 3
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=142.02 Aligned_cols=64 Identities=30% Similarity=0.429 Sum_probs=59.7
Q ss_pred ccCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 162 ENGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 162 ~~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
..+.+|+|+.|+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++.
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3466788999999999999999999999999999999999999999999999999999998653
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-19 Score=140.75 Aligned_cols=63 Identities=27% Similarity=0.383 Sum_probs=59.3
Q ss_pred ccCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 162 ENGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 162 ~~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
..+.+|+|++||.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 346778899999999999999999999999999999999999999999999999999999865
No 5
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.77 E-value=1.4e-19 Score=134.36 Aligned_cols=61 Identities=31% Similarity=0.442 Sum_probs=53.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 164 GLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 164 ~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
+.+|+|+.|+.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 4577899999999999999999999999999999999999999999999999999999864
No 6
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.77 E-value=2.3e-19 Score=133.74 Aligned_cols=61 Identities=30% Similarity=0.486 Sum_probs=56.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 164 GLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 164 ~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
+.+|+|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4678899999999999999999999999999999999999999999999999999999753
No 7
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=4.6e-19 Score=138.25 Aligned_cols=63 Identities=25% Similarity=0.452 Sum_probs=59.0
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
...+|+|++|+.+|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 356788999999999999999999999999999999999999999999999999999998654
No 8
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=2.1e-19 Score=136.69 Aligned_cols=62 Identities=26% Similarity=0.459 Sum_probs=58.6
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
...+|+|++|+.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 35678899999999999999999999999999999999999999999999999999999764
No 9
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-19 Score=138.72 Aligned_cols=65 Identities=23% Similarity=0.336 Sum_probs=60.3
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEV 227 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~~ 227 (339)
...+|+|++|+.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|++....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999876543
No 10
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.5e-19 Score=135.34 Aligned_cols=62 Identities=32% Similarity=0.491 Sum_probs=58.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 164 GLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 164 ~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
..+|+|++|+.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 56788999999999999999999999999999999999999999999999999999998643
No 11
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=3.7e-19 Score=135.07 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=59.0
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
.+.+|+|++|+.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 356788999999999999999999999999999999999999999999999999999998653
No 12
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.76 E-value=9.2e-19 Score=135.56 Aligned_cols=64 Identities=33% Similarity=0.509 Sum_probs=59.6
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 226 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~ 226 (339)
+..+|+|++|+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+....
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 4567889999999999999999999999999999999999999999999999999999986543
No 13
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=4.1e-19 Score=138.42 Aligned_cols=64 Identities=27% Similarity=0.443 Sum_probs=59.7
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 226 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~ 226 (339)
.+.+|+|++|+.+|+.+||..|..++||+..+|.+||.+|+|+++||+|||||||+|+|+++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 3567889999999999999999999999999999999999999999999999999999986543
No 14
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=7.1e-19 Score=133.72 Aligned_cols=61 Identities=38% Similarity=0.584 Sum_probs=57.9
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 164 GLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 164 ~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
..+|+|++|+.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 4567899999999999999999999999999999999999999999999999999999764
No 15
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.76 E-value=6.5e-19 Score=133.32 Aligned_cols=63 Identities=32% Similarity=0.530 Sum_probs=59.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhh
Q 019530 164 GLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 226 (339)
Q Consensus 164 ~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~ 226 (339)
+.+|+|+.||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+....
T Consensus 1 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 1 GPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CCSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 357899999999999999999999999999999999999999999999999999999986644
No 16
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4e-19 Score=135.11 Aligned_cols=62 Identities=29% Similarity=0.420 Sum_probs=58.4
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
...+|+|++|+.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 35678899999999999999999999999999999999999999999999999999999754
No 17
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.75 E-value=6.8e-19 Score=141.32 Aligned_cols=67 Identities=28% Similarity=0.444 Sum_probs=60.6
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhhhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDC 229 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~~~~ 229 (339)
.+.+|+|+.||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|++..+...
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~ 81 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEERE 81 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHH
Confidence 3567789999999999999999999999999999999999999999999999999999987655433
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.75 E-value=5.6e-19 Score=130.74 Aligned_cols=58 Identities=33% Similarity=0.575 Sum_probs=53.3
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 165 LTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 165 ~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
.+|+|+.||.+|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999996
No 19
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=5.5e-19 Score=138.37 Aligned_cols=60 Identities=10% Similarity=0.174 Sum_probs=56.9
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKE----HNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~----~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
.+.||+|+.||.+|+.+||..|+. ++||+..+|++||.+|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 456788999999999999999999 999999999999999999999999999999999885
No 20
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=8.8e-19 Score=128.20 Aligned_cols=57 Identities=30% Similarity=0.543 Sum_probs=55.3
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 166 TRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 166 kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
+|+|+.||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999986
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=4.9e-19 Score=134.39 Aligned_cols=63 Identities=19% Similarity=0.344 Sum_probs=59.0
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
.+.+|+|++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 356788999999999999999999999999999999999999999999999999999998653
No 22
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.75 E-value=1.1e-18 Score=136.28 Aligned_cols=63 Identities=32% Similarity=0.467 Sum_probs=58.8
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
.+.+|+|++|+..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|++..
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 456788999999999999999999999999999999999999999999999999999998654
No 23
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5e-19 Score=137.93 Aligned_cols=62 Identities=23% Similarity=0.376 Sum_probs=58.5
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEH----NTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~----~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
.+.+|+|+.||.+|+.+||..|..+ +||+..+|.+||.+|||+++||+|||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 4567889999999999999999999 9999999999999999999999999999999999754
No 24
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.74 E-value=9e-19 Score=137.08 Aligned_cols=61 Identities=30% Similarity=0.522 Sum_probs=54.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 164 GLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 164 ~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
..+|+|+.|+.+|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+++
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4678899999999999999999999999999999999999999999999999999999864
No 25
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.74 E-value=5e-19 Score=133.87 Aligned_cols=63 Identities=25% Similarity=0.415 Sum_probs=59.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhh
Q 019530 164 GLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 226 (339)
Q Consensus 164 ~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~ 226 (339)
+.+|+|+.|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+++..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 467889999999999999999999999999999999999999999999999999999986543
No 26
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.74 E-value=8.7e-19 Score=132.73 Aligned_cols=61 Identities=30% Similarity=0.525 Sum_probs=57.9
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 165 LTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 165 ~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
.+|+|+.||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4678999999999999999999999999999999999999999999999999999998654
No 27
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=8.3e-19 Score=131.79 Aligned_cols=61 Identities=28% Similarity=0.444 Sum_probs=58.0
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 164 GLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 164 ~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
+.+|+|+.||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4578899999999999999999999999999999999999999999999999999999764
No 28
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.74 E-value=1.3e-18 Score=128.36 Aligned_cols=58 Identities=34% Similarity=0.572 Sum_probs=55.4
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhh
Q 019530 166 TRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 223 (339)
Q Consensus 166 kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krk 223 (339)
+|+|+.||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999974
No 29
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.74 E-value=1.2e-18 Score=133.75 Aligned_cols=62 Identities=27% Similarity=0.438 Sum_probs=58.4
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 164 GLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 164 ~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
..+|+|++|+..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 46788999999999999999999999999999999999999999999999999999997543
No 30
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=126.64 Aligned_cols=57 Identities=35% Similarity=0.550 Sum_probs=54.9
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHH
Q 019530 165 LTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 221 (339)
Q Consensus 165 ~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~K 221 (339)
.+|.|+.|+..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 567899999999999999999999999999999999999999999999999999986
No 31
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.74 E-value=1.1e-18 Score=138.39 Aligned_cols=62 Identities=29% Similarity=0.537 Sum_probs=55.4
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
+..+|+|+.|+.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 45678899999999999999999999999999999999999999999999999999999754
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=1.6e-18 Score=131.18 Aligned_cols=61 Identities=31% Similarity=0.537 Sum_probs=57.9
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 165 LTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 165 ~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
.+|+|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 4678999999999999999999999999999999999999999999999999999998654
No 33
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=2.4e-18 Score=131.53 Aligned_cols=59 Identities=20% Similarity=0.390 Sum_probs=56.0
Q ss_pred CCCCccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 166 TRKKLRLSKEQSAFLEESFKE-HNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 166 kRkRtrft~~Ql~~LE~~F~~-~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
.++|++|+.+|+.+||..|.. ++||+..+|.+||.+|||+++||+|||||||+|+|+++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467899999999999999996 99999999999999999999999999999999999754
No 34
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=132.07 Aligned_cols=63 Identities=27% Similarity=0.408 Sum_probs=58.9
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
++.+|.|++|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 456778999999999999999999999999999999999999999999999999999998643
No 35
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-18 Score=130.80 Aligned_cols=62 Identities=31% Similarity=0.452 Sum_probs=58.5
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhh
Q 019530 165 LTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 226 (339)
Q Consensus 165 ~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~ 226 (339)
.||+|++|+.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|++..+
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 36789999999999999999999999999999999999999999999999999999987654
No 36
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.73 E-value=1.2e-18 Score=136.52 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=55.7
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKE-----HNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~-----~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
.+.||+||.||.+|+.+|| .|.. ++||+..+|++||.+|+|+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 4567889999999999999 7999 999999999999999999999999999999999885
No 37
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=3.4e-18 Score=131.07 Aligned_cols=60 Identities=20% Similarity=0.335 Sum_probs=56.4
Q ss_pred CCCCCccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 165 LTRKKLRLSKEQSAFLEESFKE-HNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 165 ~kRkRtrft~~Ql~~LE~~F~~-~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
.+++|++||.+|+.+||..|.. ++||+..+|.+||.++||+++||+|||||||+|+|+++
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 3567999999999999999995 99999999999999999999999999999999999865
No 38
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=2.9e-18 Score=133.30 Aligned_cols=59 Identities=24% Similarity=0.239 Sum_probs=55.3
Q ss_pred CCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 167 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 167 RkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
++|.+||.+|+.+||+.|..++||+..+|++||..+||+++||+|||||||+|+|+.+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999997643
No 39
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-18 Score=132.39 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=56.7
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhh
Q 019530 166 TRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 226 (339)
Q Consensus 166 kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~ 226 (339)
.++|++||.+|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+++..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 3567789999999999999999999999999999999999999999999999999986543
No 40
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.72 E-value=2.6e-18 Score=126.76 Aligned_cols=57 Identities=26% Similarity=0.442 Sum_probs=50.7
Q ss_pred CCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 168 KKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 168 kRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
.|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 478999999999999999999999999999999999999999999999999999754
No 41
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=3.2e-18 Score=138.15 Aligned_cols=63 Identities=27% Similarity=0.479 Sum_probs=56.2
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
+..+|+|+.||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 356788999999999999999999999999999999999999999999999999999998754
No 42
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.72 E-value=2.7e-18 Score=126.84 Aligned_cols=58 Identities=41% Similarity=0.667 Sum_probs=48.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHH
Q 019530 164 GLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 221 (339)
Q Consensus 164 ~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~K 221 (339)
+.+|+|++|+.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4567899999999999999999999999999999999999999999999999999986
No 43
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.72 E-value=3e-18 Score=138.14 Aligned_cols=62 Identities=26% Similarity=0.302 Sum_probs=56.8
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 164 GLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 164 ~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
..+|+|++|+..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+.+.
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 45678999999999999999999999999999999999999999999999999999998653
No 44
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=5.5e-18 Score=129.69 Aligned_cols=63 Identities=25% Similarity=0.270 Sum_probs=58.5
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKE---HNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~---~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
.+.+|+|++|+.+|+.+||.+|.. ++||+..+|.+||.++||+++||+|||||||+|+|+...
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 356778999999999999999987 999999999999999999999999999999999998654
No 45
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.72 E-value=4.8e-18 Score=123.85 Aligned_cols=54 Identities=35% Similarity=0.531 Sum_probs=51.0
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhh
Q 019530 170 LRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 223 (339)
Q Consensus 170 trft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krk 223 (339)
|.|+.+|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999975
No 46
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.71 E-value=6.1e-18 Score=129.46 Aligned_cols=64 Identities=28% Similarity=0.389 Sum_probs=59.4
Q ss_pred CCCCccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhhhhh
Q 019530 166 TRKKLRLSKEQSAFLEESF---KEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDC 229 (339)
Q Consensus 166 kRkRtrft~~Ql~~LE~~F---~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~~~~ 229 (339)
||+|++|+..|+.+||.+| ..++||+..++.+||..+||+++||++||||||+|+|++......
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~~ 68 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQE 68 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccccc
Confidence 6789999999999999999 899999999999999999999999999999999999987655443
No 47
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-18 Score=131.91 Aligned_cols=61 Identities=26% Similarity=0.299 Sum_probs=56.9
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 165 LTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 165 ~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
..+.|++||.+|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+++.
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 3456899999999999999999999999999999999999999999999999999998654
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=5.3e-18 Score=130.02 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=58.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhh
Q 019530 164 GLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 226 (339)
Q Consensus 164 ~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~ 226 (339)
+.++.|+.||.+|+.+||..|..++||+..++.+||.++||+++||+|||||||+|+|+.+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 346789999999999999999999999999999999999999999999999999999986543
No 49
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.1e-17 Score=134.59 Aligned_cols=63 Identities=24% Similarity=0.352 Sum_probs=59.1
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------CCcccccchhhhhHHHHHhhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLN---------------LRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~Lg---------------Ls~rQVqvWFQNRRaK~Krkq~ 225 (339)
.+.+|.|+.|+..|+.+||..|+.++||+..+|++||..|+ |++.||++||||||+|+|+++.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 35678899999999999999999999999999999999999 9999999999999999997654
No 50
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.70 E-value=1.3e-17 Score=131.59 Aligned_cols=62 Identities=29% Similarity=0.412 Sum_probs=57.4
Q ss_pred CCCCccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhhh
Q 019530 166 TRKKLRLSKEQSAFLEESF---KEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEV 227 (339)
Q Consensus 166 kRkRtrft~~Ql~~LE~~F---~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~~ 227 (339)
||+|++|+.+|+.+||.+| ..++||+..+|.+||.++||+++||++||||||+|+|++....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 6789999999999999999 8999999999999999999999999999999999999865443
No 51
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=5.5e-18 Score=135.46 Aligned_cols=58 Identities=24% Similarity=0.432 Sum_probs=54.1
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhhh
Q 019530 170 LRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEV 227 (339)
Q Consensus 170 trft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~~ 227 (339)
.+||.+|+.+||+.|..++||+..+|.+||..|||+++||+|||||||+|||+++...
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHh
Confidence 3899999999999999999999999999999999999999999999999999765433
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=7.7e-18 Score=125.62 Aligned_cols=58 Identities=28% Similarity=0.352 Sum_probs=55.7
Q ss_pred CCCCCccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 165 LTRKKLRLSKEQSAFLEESF---KEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 165 ~kRkRtrft~~Ql~~LE~~F---~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
.+|+|+.|+.+|+.+||.+| ..++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 56789999999999999999 89999999999999999999999999999999999986
No 53
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.68 E-value=2.4e-17 Score=121.43 Aligned_cols=56 Identities=30% Similarity=0.420 Sum_probs=53.6
Q ss_pred CCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhh
Q 019530 168 KKLRLSKEQSAFLEESFKE---HNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 223 (339)
Q Consensus 168 kRtrft~~Ql~~LE~~F~~---~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krk 223 (339)
+|++|+.+|+.+||..|.. ++||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4789999999999999999 9999999999999999999999999999999999963
No 54
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.68 E-value=2.7e-17 Score=129.33 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=57.8
Q ss_pred CCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhh
Q 019530 164 GLTRKKLRLSKEQSAFLEESFKE---HNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 226 (339)
Q Consensus 164 ~~kRkRtrft~~Ql~~LE~~F~~---~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~ 226 (339)
+.+|+|++|+.+|+.+|+.+|.. ++||+..+|.+||.++||+++||+|||||||+|+|+...+
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 56778999999999999999988 5999999999999999999999999999999999975443
No 55
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=8.1e-18 Score=129.19 Aligned_cols=58 Identities=26% Similarity=0.395 Sum_probs=54.6
Q ss_pred CCCCccCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhh
Q 019530 166 TRKKLRLSKEQSAFLEESF-KEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 223 (339)
Q Consensus 166 kRkRtrft~~Ql~~LE~~F-~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krk 223 (339)
.++|.+++.+|+.+||..| ..++||+..+|.+||.+|||+++||+|||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 4567789999999999999 999999999999999999999999999999999999964
No 56
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.67 E-value=2.4e-17 Score=142.55 Aligned_cols=61 Identities=31% Similarity=0.506 Sum_probs=55.6
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 223 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krk 223 (339)
.+.||+|+.|+..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+||+
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4567789999999999999999999999999999999999999999999999999999975
No 57
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=7e-17 Score=128.63 Aligned_cols=58 Identities=22% Similarity=0.317 Sum_probs=53.7
Q ss_pred CCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 168 KKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 168 kRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
++.+||.+|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+++.
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 3445999999999999999999999999999999999999999999999999997543
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.67 E-value=4.7e-17 Score=128.71 Aligned_cols=59 Identities=29% Similarity=0.396 Sum_probs=55.9
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHH
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKE---HNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 221 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~---~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~K 221 (339)
.+++|+|++|+.+|+.+||.+|.. ++||+..+|.+||.++||+++||++||||||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 345677899999999999999999 99999999999999999999999999999999998
No 59
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.66 E-value=3.3e-17 Score=128.73 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=55.0
Q ss_pred CCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 166 TRKKLRLSKEQSAFLEESFKE---HNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 166 kRkRtrft~~Ql~~LE~~F~~---~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
+++|++|+.+|+.+||.+|.. ++||+..+|.+||..+||+++||++||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 456777999999999999999 999999999999999999999999999999999998643
No 60
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=2.7e-17 Score=125.57 Aligned_cols=57 Identities=40% Similarity=0.581 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhhh
Q 019530 171 RLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEV 227 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~~ 227 (339)
.+|..|+.+||+.|..++||+..+|.+||.+|||+++||+|||||||+|+|+++...
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~ 66 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSS 66 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhh
Confidence 579999999999999999999999999999999999999999999999999876543
No 61
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.65 E-value=4.8e-17 Score=142.56 Aligned_cols=60 Identities=28% Similarity=0.462 Sum_probs=54.9
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhh
Q 019530 164 GLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 223 (339)
Q Consensus 164 ~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krk 223 (339)
+.||+|+.|+..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+||+
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 567889999999999999999999999999999999999999999999999999999975
No 62
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=130.20 Aligned_cols=63 Identities=17% Similarity=0.368 Sum_probs=58.4
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHc---------------------CCCcccccchhhhhHHHHH
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQL---------------------NLRPRQVEVWFQNRRARTK 221 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~L---------------------gLs~rQVqvWFQNRRaK~K 221 (339)
.+.||.|+.|+..|+.+||+.|+.++||+..+|++||..| .|++.+|+|||||||+|+|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 3567889999999999999999999999999999999999 7999999999999999999
Q ss_pred hhhh
Q 019530 222 LKQT 225 (339)
Q Consensus 222 rkq~ 225 (339)
+++.
T Consensus 84 r~~~ 87 (102)
T 2da6_A 84 FRQK 87 (102)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 7543
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.65 E-value=3.8e-17 Score=143.95 Aligned_cols=63 Identities=25% Similarity=0.357 Sum_probs=52.4
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 225 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~ 225 (339)
.+.||+|++|+..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+||++.
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 456778999999999999999999999999999999999999999999999999999998654
No 64
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.4e-16 Score=120.82 Aligned_cols=58 Identities=22% Similarity=0.285 Sum_probs=54.7
Q ss_pred CCCCCCccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHH
Q 019530 164 GLTRKKLRLSKEQSAFLEESFKE-HNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 221 (339)
Q Consensus 164 ~~kRkRtrft~~Ql~~LE~~F~~-~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~K 221 (339)
..||.||.|+.+|+.+|+..|+. ++||+.+.|+.||.+|||++++|+|||||||--.|
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 57889999999999999999999 99999999999999999999999999999997544
No 65
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=120.82 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 172 LSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 172 ft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
-|++|+.+||+.|..++||+..+|.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999754
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.64 E-value=1.4e-16 Score=138.28 Aligned_cols=60 Identities=23% Similarity=0.380 Sum_probs=57.1
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
.++||+|++|+..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 356778999999999999999999999999999999999999999999999999999986
No 67
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=6.3e-17 Score=121.84 Aligned_cols=49 Identities=31% Similarity=0.504 Sum_probs=46.3
Q ss_pred HHHHHHHHHHH-hhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 174 KEQSAFLEESF-KEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 174 ~~Ql~~LE~~F-~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
..|+.+||+.| ..++||+..+|.+||++|||+++||+|||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 46899999999 67999999999999999999999999999999999986
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-16 Score=119.72 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=51.2
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhh
Q 019530 169 KLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 223 (339)
Q Consensus 169 Rtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krk 223 (339)
+..++.+|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|.++.
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 4456799999999999999999999999999999999999999999999998763
No 69
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.63 E-value=9e-17 Score=130.76 Aligned_cols=63 Identities=16% Similarity=0.382 Sum_probs=54.2
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH------------------cC---CCcccccchhhhhHHHHH
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQ------------------LN---LRPRQVEVWFQNRRARTK 221 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~------------------Lg---Ls~rQVqvWFQNRRaK~K 221 (339)
.+.||.|+.|+..|+.+||..|..++||+..+|++||.. || |++.||+|||||||+++|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 356778999999999999999999999999999999999 88 999999999999999998
Q ss_pred hhhh
Q 019530 222 LKQT 225 (339)
Q Consensus 222 rkq~ 225 (339)
+++.
T Consensus 87 ~k~~ 90 (99)
T 1lfb_A 87 FRHK 90 (99)
T ss_dssp CCC-
T ss_pred Hhch
Confidence 7664
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.61 E-value=3.1e-16 Score=136.80 Aligned_cols=61 Identities=30% Similarity=0.390 Sum_probs=57.4
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhh
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 223 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krk 223 (339)
.+.||+|++|+..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3567889999999999999999999999999999999999999999999999999999973
No 71
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=4.4e-16 Score=117.78 Aligned_cols=61 Identities=23% Similarity=0.224 Sum_probs=51.1
Q ss_pred ccCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhhhhhH
Q 019530 170 LRLSKEQSAFLEESFK---EHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCE 230 (339)
Q Consensus 170 trft~~Ql~~LE~~F~---~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~~~~e 230 (339)
.+|+.+|+.+|+.+|. .++||+..+|.+||.++||+++||++||||||+|+|+...++.++
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~~ 66 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNR 66 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC------
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhcc
Confidence 3799999999999999 999999999999999999999999999999999999877766553
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.59 E-value=3.9e-16 Score=136.83 Aligned_cols=63 Identities=25% Similarity=0.331 Sum_probs=54.8
Q ss_pred ccCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 162 ENGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 162 ~~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
..+.||+|+.|+..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 345678999999999999999999999999999999999999999999999999999999754
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.41 E-value=3.3e-14 Score=128.45 Aligned_cols=60 Identities=17% Similarity=0.367 Sum_probs=53.8
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------------CCcccccchhhhhHHHHH
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLN---------------------LRPRQVEVWFQNRRARTK 221 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~Lg---------------------Ls~rQVqvWFQNRRaK~K 221 (339)
.+.||.|+.|+..|+.+||+.|..++||+..+|++||..++ |++.+|++||||||+|+|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 35678899999999999999999999999999999999999 999999999999999987
Q ss_pred h
Q 019530 222 L 222 (339)
Q Consensus 222 r 222 (339)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 4
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.40 E-value=2.1e-13 Score=108.84 Aligned_cols=55 Identities=29% Similarity=0.322 Sum_probs=51.5
Q ss_pred ccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhh
Q 019530 170 LRLSKEQSAFLEESFKE---HNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 224 (339)
Q Consensus 170 trft~~Ql~~LE~~F~~---~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq 224 (339)
..|+.+++.+|+.+|.. ++||+..+|.+||.++||+++||++||||||.|+|+..
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 46899999999999987 99999999999999999999999999999999998643
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.3e-13 Score=102.84 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHH
Q 019530 174 KEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRART 220 (339)
Q Consensus 174 ~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~ 220 (339)
++|+..|+.+|..+++|+.+++..||..+||..++|+|||||||++.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 57899999999999999999999999999999999999999999743
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.28 E-value=5.8e-13 Score=128.97 Aligned_cols=56 Identities=41% Similarity=0.679 Sum_probs=52.8
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHH
Q 019530 166 TRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 221 (339)
Q Consensus 166 kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~K 221 (339)
++.|+.|+.+|+..||+.|+.++||+..+|++||.++||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34567899999999999999999999999999999999999999999999999986
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=119.48 Aligned_cols=59 Identities=19% Similarity=0.416 Sum_probs=53.3
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------------CCcccccchhhhhHHHHH
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLN---------------------LRPRQVEVWFQNRRARTK 221 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~Lg---------------------Ls~rQVqvWFQNRRaK~K 221 (339)
.+.||.|+.|+..|+.+||+.|..++||+..+|++||..+| |++.||++||||||++..
T Consensus 140 ~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~~ 219 (221)
T 2h8r_A 140 KKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 219 (221)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhhh
Confidence 45677899999999999999999999999999999999988 899999999999998753
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.88 E-value=1.1e-10 Score=78.46 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=21.2
Q ss_pred ccccchhhhhHHHHHhhhhhhhhHH
Q 019530 207 RQVEVWFQNRRARTKLKQTEVDCEY 231 (339)
Q Consensus 207 rQVqvWFQNRRaK~Krkq~~~~~e~ 231 (339)
+||+|||||||+|||+++.+...+.
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~ 25 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDI 25 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHH
Confidence 6999999999999999887765543
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.22 E-value=0.01 Score=44.91 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhh
Q 019530 175 EQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQN 215 (339)
Q Consensus 175 ~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQN 215 (339)
.-.+.|+++|..++.+.......|+.+..|+..||+.||--
T Consensus 16 ~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 16 PDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 34578999999999999999999999999999999999953
No 80
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.56 E-value=0.48 Score=37.15 Aligned_cols=41 Identities=29% Similarity=0.319 Sum_probs=25.5
Q ss_pred HHHHHhhhh----hhhhHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 019530 217 RARTKLKQT----EVDCEYLKRCCETLTEENRRLQKELQELRALK 257 (339)
Q Consensus 217 RaK~Krkq~----~~~~e~Lk~~~~~l~eEn~~l~~e~~~lralk 257 (339)
|.|.|+++. +...+.|..++..|..+.+.|.+|+..|+.+-
T Consensus 29 rSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433 33446667777777777777777777777553
No 81
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=89.33 E-value=0.1 Score=40.27 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=31.0
Q ss_pred CccCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHcCCCcccccchhhhh
Q 019530 169 KLRLSKEQSAFLEESFKEH-NTLNPKQKLALAKQLNLRPRQVEVWFQNR 216 (339)
Q Consensus 169 Rtrft~~Ql~~LE~~F~~~-~~ps~~~r~~LA~~LgLs~rQVqvWFQNR 216 (339)
|..|+.++....-..+... .. ...++|+.+|++...|..|...-
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHHH
Confidence 4568888776555555432 22 25689999999999999998543
No 82
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=79.33 E-value=3.7 Score=31.42 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=20.8
Q ss_pred HHHHHhhhhhh----hhHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 019530 217 RARTKLKQTEV----DCEYLKRCCETLTEENRRLQKELQELRA 255 (339)
Q Consensus 217 RaK~Krkq~~~----~~e~Lk~~~~~l~eEn~~l~~e~~~lra 255 (339)
|.|.|+++... ..+.|..++..|..+...|.+|+..|+.
T Consensus 29 rSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544333 3344555555566666666666665553
No 83
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=74.32 E-value=2.7 Score=29.32 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=31.1
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhh
Q 019530 169 KLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQ 214 (339)
Q Consensus 169 Rtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQ 214 (339)
|..|+.++...+...+... ........++|.++|++...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4568888877665444433 22111256899999999999999975
No 84
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=73.83 E-value=4 Score=32.52 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=39.0
Q ss_pred CCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHH
Q 019530 167 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 219 (339)
Q Consensus 167 RkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK 219 (339)
++|.+||.++...+-..+..+..... .+||+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 35778999998887777765555543 368999999999999999887654
No 85
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=70.14 E-value=6.9 Score=29.43 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=31.6
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhh
Q 019530 166 TRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQ 214 (339)
Q Consensus 166 kRkRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQ 214 (339)
++.+..|+.++....-+.+... . ...+||+++|++...|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 3456688988865555556432 2 245789999999999999974
No 86
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=64.40 E-value=7.6 Score=29.25 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 171 RLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
.++..+..+|...|-... .-.+||..||++...|+.+...-|.+.|+
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 478888888877654332 24679999999999999988766655553
No 87
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=60.85 E-value=22 Score=25.72 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=14.0
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 019530 228 DCEYLKRCCETLTEENRRLQKELQELRA 255 (339)
Q Consensus 228 ~~e~Lk~~~~~l~eEn~~l~~e~~~lra 255 (339)
..+.|...+..|..+...|+.|+..|+.
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555543
No 88
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=59.10 E-value=28 Score=24.75 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=12.8
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHH
Q 019530 228 DCEYLKRCCETLTEENRRLQKELQELR 254 (339)
Q Consensus 228 ~~e~Lk~~~~~l~eEn~~l~~e~~~lr 254 (339)
..+.|...+..|..+...|+.|+..|+
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555544444
No 89
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=58.99 E-value=14 Score=26.01 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=24.5
Q ss_pred hhhhHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 019530 226 EVDCEYLKRCCETLTEENRRLQKELQELRA 255 (339)
Q Consensus 226 ~~~~e~Lk~~~~~l~eEn~~l~~e~~~lra 255 (339)
..+.+.|+.+...|+.++..|+++++++++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888888888888874
No 90
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=58.54 E-value=16 Score=23.50 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=21.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhh
Q 019530 232 LKRCCETLTEENRRLQKELQELRALK 257 (339)
Q Consensus 232 Lk~~~~~l~eEn~~l~~e~~~lralk 257 (339)
|...++.|..+|..|+.|+..||.|-
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44556788999999999999999774
No 91
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=57.21 E-value=3.6 Score=26.71 Aligned_cols=42 Identities=10% Similarity=0.163 Sum_probs=29.0
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhH
Q 019530 171 RLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRR 217 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRR 217 (339)
.++.++...+...+... .+ ..+||+.+|++...|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g--~s---~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--HP---RQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--CC---HHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC--CC---HHHHHHHHCCCHHHHHHHHHHcc
Confidence 35555655555555543 22 45799999999999999997543
No 92
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=55.72 E-value=35 Score=27.05 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhh
Q 019530 171 RLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 223 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krk 223 (339)
.++..|..+|...|.... .-.++|..+|++...|+.|...-|.+.|+.
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 478888888887765432 235799999999999999998766666543
No 93
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=55.59 E-value=28 Score=26.90 Aligned_cols=33 Identities=30% Similarity=0.286 Sum_probs=27.6
Q ss_pred hhhhhHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 019530 225 TEVDCEYLKRCCETLTEENRRLQKELQELRALK 257 (339)
Q Consensus 225 ~~~~~e~Lk~~~~~l~eEn~~l~~e~~~lralk 257 (339)
.-.+++.|..+.+.+.+|+..+++++.+|+.|-
T Consensus 44 aL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888889999999999999999998763
No 94
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=55.28 E-value=8.9 Score=24.23 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=28.2
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhh
Q 019530 171 RLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQN 215 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQN 215 (339)
.++.++...+...+... .+ ..++|+.+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g--~s---~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN--VS---LHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT--CC---HHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC--CC---HHHHHHHHCcCHHHHHHHHhh
Confidence 46777665555555432 22 557899999999999999853
No 95
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=54.05 E-value=7.9 Score=26.98 Aligned_cols=47 Identities=11% Similarity=-0.100 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 171 RLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
.++..+..+|...|.... .-.++|..+|++...|+.|...-|.+.|+
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 477888888887764432 24579999999999999988765555553
No 96
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=53.87 E-value=27 Score=26.56 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=28.1
Q ss_pred HhhhhhhhhHHHHHhhhhhHHHHHHHHHHHHHHH
Q 019530 221 KLKQTEVDCEYLKRCCETLTEENRRLQKELQELR 254 (339)
Q Consensus 221 Krkq~~~~~e~Lk~~~~~l~eEn~~l~~e~~~lr 254 (339)
-+.+.......+......|..||..|+.+|..|.
T Consensus 30 SR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 30 SRDKAKMRNLETQHKVLELTAENERLQKKVEQLS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667788888999999999999999887
No 97
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=53.21 E-value=28 Score=25.16 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=23.7
Q ss_pred hhhHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 019530 227 VDCEYLKRCCETLTEENRRLQKELQELRAL 256 (339)
Q Consensus 227 ~~~e~Lk~~~~~l~eEn~~l~~e~~~lral 256 (339)
.....|....+.|..+|..|..++..|+.+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888999999999999988853
No 98
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=53.11 E-value=39 Score=24.21 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=13.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHH
Q 019530 230 EYLKRCCETLTEENRRLQKELQELR 254 (339)
Q Consensus 230 e~Lk~~~~~l~eEn~~l~~e~~~lr 254 (339)
..|....+.|..+|..|+.++..|+
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555554
No 99
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=53.00 E-value=16 Score=26.95 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=35.4
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 170 LRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 170 trft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
..++..+..+|...++ . . .-.++|..+|++...|+.+..+-+.|.+.
T Consensus 20 ~~Lt~~e~~vl~l~~~--g-~---s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ--G-L---PNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHHHTT--T-C---CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHc--C-C---CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4689999999988432 2 2 34579999999999999988766665554
No 100
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=52.60 E-value=21 Score=27.69 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=35.5
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHH
Q 019530 169 KLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 221 (339)
Q Consensus 169 Rtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~K 221 (339)
...++..+..+|.-.++-.. -.+||..|++++..|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s------~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFL------VTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCC------HHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 34689999999987653222 368999999999999998876555544
No 101
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=51.65 E-value=17 Score=29.88 Aligned_cols=52 Identities=10% Similarity=0.195 Sum_probs=38.8
Q ss_pred CCCCccCCHHHHHHHHHHH-hhcCCCCHHHHHHHH-HHc--CCCcccccchhhhhH
Q 019530 166 TRKKLRLSKEQSAFLEESF-KEHNTLNPKQKLALA-KQL--NLRPRQVEVWFQNRR 217 (339)
Q Consensus 166 kRkRtrft~~Ql~~LE~~F-~~~~~ps~~~r~~LA-~~L--gLs~rQVqvWFQNRR 217 (339)
+++|.++|-+|...+-..+ +.++..+..+....| .++ +++...|..|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 5788999999999999999 677777655433322 167 778888999987644
No 102
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=50.86 E-value=12 Score=28.60 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=35.3
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 171 RLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
.++..+..+|.-.++-. + ..++|..||++...|+.+..+-+.|.+.
T Consensus 27 ~Lt~~e~~vl~l~~~g~---s---~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL---T---NKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHHHTTC---C---HHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHcCC---C---HHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 58999999998864332 2 3679999999999999988766666554
No 103
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=50.37 E-value=16 Score=25.58 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=35.2
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 169 KLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 169 Rtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
...++..+..+|...+. .+ .-.++|..+|++...|+.++.+-+.|.+.
T Consensus 9 ~~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 34588999999988432 22 34579999999999999988765555543
No 104
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=49.66 E-value=13 Score=26.64 Aligned_cols=46 Identities=30% Similarity=0.386 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 171 RLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
.++..+..+|.-.|. . .+ ..++|..+|++...|+.+..+-+.|.+.
T Consensus 16 ~L~~~e~~vl~l~~~--g-~s---~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--G-LP---NKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHCHHHHHHHHHHTT--T-CC---HHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHc--C-CC---HHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 378888888877432 2 22 3579999999999999988766665554
No 105
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=49.35 E-value=25 Score=22.56 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=21.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhh
Q 019530 232 LKRCCETLTEENRRLQKELQELRALK 257 (339)
Q Consensus 232 Lk~~~~~l~eEn~~l~~e~~~lralk 257 (339)
|....+.|..+|..|+.|+..|+.|-
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44456788999999999999999763
No 106
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=48.89 E-value=38 Score=26.23 Aligned_cols=50 Identities=30% Similarity=0.382 Sum_probs=30.9
Q ss_pred hhhhhhhhHHHHHhhhhhHHHHHHHHHHHHHHHH-hhhCCCcccCCCCccc
Q 019530 222 LKQTEVDCEYLKRCCETLTEENRRLQKELQELRA-LKTSQPFYMQLPATTL 271 (339)
Q Consensus 222 rkq~~~~~e~Lk~~~~~l~eEn~~l~~e~~~lra-lk~s~~~~~~~p~~~~ 271 (339)
+.........+....+.|..||..|+.+|.+|.. +..--.+.+++|..-+
T Consensus 31 R~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~ 81 (87)
T 1hjb_A 31 RDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLL 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHh
Confidence 4555566677888888999999999999998883 3222234456665433
No 107
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=48.59 E-value=38 Score=24.38 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=24.0
Q ss_pred hhhhHHHHHhhhhhHHHHHHHHHHHHHHH
Q 019530 226 EVDCEYLKRCCETLTEENRRLQKELQELR 254 (339)
Q Consensus 226 ~~~~e~Lk~~~~~l~eEn~~l~~e~~~lr 254 (339)
....+.|....+.|..+|..|..++..|+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888999999999999998887
No 108
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=46.03 E-value=47 Score=26.14 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhh
Q 019530 171 RLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 223 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krk 223 (339)
.++..+..+|...|.... .-.++|..+|++...|+.+...-|.+.|+.
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 467777777777654332 235799999999999999998666666543
No 109
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=45.72 E-value=45 Score=26.05 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=23.1
Q ss_pred hhhhhHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 019530 225 TEVDCEYLKRCCETLTEENRRLQKELQELRA 255 (339)
Q Consensus 225 ~~~~~e~Lk~~~~~l~eEn~~l~~e~~~lra 255 (339)
.+.+...|..+.+.|..|+.++.+|+..++.
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777778888888888888887773
No 110
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=45.56 E-value=49 Score=26.37 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=20.1
Q ss_pred hhhhhHHHHHhhhhhHHHHHHHHHHHHHHH
Q 019530 225 TEVDCEYLKRCCETLTEENRRLQKELQELR 254 (339)
Q Consensus 225 ~~~~~e~Lk~~~~~l~eEn~~l~~e~~~lr 254 (339)
-......|....+.|+.||++|..|...-+
T Consensus 63 ~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 63 LDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455666677777888888877766555
No 111
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=45.44 E-value=0.59 Score=39.87 Aligned_cols=30 Identities=3% Similarity=-0.031 Sum_probs=21.6
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhcCCCCH
Q 019530 163 NGLTRKKLRLSKEQSAFLEESFKEHNTLNP 192 (339)
Q Consensus 163 ~~~kRkRtrft~~Ql~~LE~~F~~~~~ps~ 192 (339)
.+.||.|+.|+..|+++|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 467889999999999999999999999864
No 112
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=45.33 E-value=21 Score=28.39 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 171 RLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
.++..+..+|. .|-.. + .-.++|..||++...|+.+...-|.+.|+
T Consensus 109 ~L~~~~r~v~~-~~~~g-~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-Y----SYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-C----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-C----CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 57788888887 43322 1 34679999999999999988765555553
No 113
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=45.13 E-value=31 Score=26.37 Aligned_cols=47 Identities=15% Similarity=0.271 Sum_probs=36.9
Q ss_pred CCccCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCC--Ccccccchhh
Q 019530 168 KKLRLSKEQSAFLEESFKE-----HNTLNPKQKLALAKQLNL--RPRQVEVWFQ 214 (339)
Q Consensus 168 kRtrft~~Ql~~LE~~F~~-----~~~ps~~~r~~LA~~LgL--s~rQVqvWFQ 214 (339)
+...++.+|+..|++.|.. +.+.+..+...+.+.+|+ +..+|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3456899999999999965 577999999888888874 5566777664
No 114
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=44.98 E-value=34 Score=22.33 Aligned_cols=29 Identities=34% Similarity=0.335 Sum_probs=18.8
Q ss_pred hhhHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 019530 227 VDCEYLKRCCETLTEENRRLQKELQELRA 255 (339)
Q Consensus 227 ~~~e~Lk~~~~~l~eEn~~l~~e~~~lra 255 (339)
++++.|....+.-.+|..+|+.++.+|+.
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 35566666666666777777777766653
No 115
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=44.65 E-value=58 Score=23.02 Aligned_cols=29 Identities=34% Similarity=0.372 Sum_probs=24.0
Q ss_pred hhhHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 019530 227 VDCEYLKRCCETLTEENRRLQKELQELRA 255 (339)
Q Consensus 227 ~~~e~Lk~~~~~l~eEn~~l~~e~~~lra 255 (339)
...+.|....+.|..+|..|+.++..|+.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888999999999999998883
No 116
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=44.31 E-value=58 Score=23.28 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=28.5
Q ss_pred hhhhhhhHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 019530 223 KQTEVDCEYLKRCCETLTEENRRLQKELQELRAL 256 (339)
Q Consensus 223 kq~~~~~e~Lk~~~~~l~eEn~~l~~e~~~lral 256 (339)
...+.+.+.|...+..|..+...|+.++..|+.+
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677889999999999999999999998854
No 117
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=44.08 E-value=22 Score=26.56 Aligned_cols=47 Identities=13% Similarity=0.103 Sum_probs=34.9
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 170 LRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 170 trft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
..++..+..+|.-.+.-.. -.++|..||++...|+.+..+-+.|.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGYS------NQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHTTCC------TTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3588999999987543222 2468999999999999998866666553
No 118
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=43.80 E-value=49 Score=23.22 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=22.0
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 019530 228 DCEYLKRCCETLTEENRRLQKELQELRA 255 (339)
Q Consensus 228 ~~e~Lk~~~~~l~eEn~~l~~e~~~lra 255 (339)
-.+.|......|..||..|..++..|+.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566678899999999999998874
No 119
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=41.61 E-value=19 Score=29.39 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=25.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhhhh
Q 019530 177 SAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVD 228 (339)
Q Consensus 177 l~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~~~ 228 (339)
+.+++-.|+.|+||...- .+| ==.|||.|||.++.+..
T Consensus 15 vRiIkiLyQSNPyP~peG-----------TRq---aRRNRRRRWR~RQrQI~ 52 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEG-----------TRQ---ARRNRRRRWRERQRQIH 52 (115)
T ss_dssp HHHHHHHHHSSCCCCCCC-----------CTT---THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCC-----------chh---hhHhHHHHHHHHHHHHH
Confidence 455666789999997531 111 12699999998776553
No 120
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=40.88 E-value=33 Score=24.46 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=17.3
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHH
Q 019530 229 CEYLKRCCETLTEENRRLQKELQELR 254 (339)
Q Consensus 229 ~e~Lk~~~~~l~eEn~~l~~e~~~lr 254 (339)
.+.|....+.|..+|..|..++..|+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777777777666
No 121
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=40.29 E-value=61 Score=22.99 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=26.8
Q ss_pred hhhhhhhHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 019530 223 KQTEVDCEYLKRCCETLTEENRRLQKELQELRA 255 (339)
Q Consensus 223 kq~~~~~e~Lk~~~~~l~eEn~~l~~e~~~lra 255 (339)
...+...+.|...+..|..+...|+.|+..|+.
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788899999999999999999888774
No 122
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=39.52 E-value=1.1e+02 Score=23.17 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=28.4
Q ss_pred hhhhHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Q 019530 226 EVDCEYLKRCCETLTEENRRLQKELQELRALKT 258 (339)
Q Consensus 226 ~~~~e~Lk~~~~~l~eEn~~l~~e~~~lralk~ 258 (339)
+++.+.||.....|.+.|.+|..|+.-||.+-.
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356788999999999999999999999997644
No 123
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=39.46 E-value=19 Score=25.28 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 171 RLSKEQSAFLEESFKEH--NTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~~--~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
.++..+..+|...|-.. .-.+ -.++|..+|++...|+.+...-+.|.|.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s---~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYT---LEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCC---HHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCCCCC---HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47888889998887321 1122 3579999999999999988755555543
No 124
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=38.74 E-value=44 Score=24.80 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=19.2
Q ss_pred hhhhhhHHHHHhhhhhHHHHHHHHHHHHHHH
Q 019530 224 QTEVDCEYLKRCCETLTEENRRLQKELQELR 254 (339)
Q Consensus 224 q~~~~~e~Lk~~~~~l~eEn~~l~~e~~~lr 254 (339)
..+.....|......+..||+.|+.++..|.
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666777777777776665
No 125
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=36.83 E-value=20 Score=26.95 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhhhh
Q 019530 177 SAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVD 228 (339)
Q Consensus 177 l~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~~~ 228 (339)
+.+++-.|+.++||++.--.. | =.|||.+|+.++.+..
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQI~ 55 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQIH 55 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHHHH
Confidence 456666789999997542111 1 1589999998776543
No 126
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=36.71 E-value=53 Score=26.59 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=33.3
Q ss_pred CCCccCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCccc
Q 019530 167 RKKLRLSKEQSAFLEESFKE-----HNTLNPKQKLALAKQLNLRPRQ 208 (339)
Q Consensus 167 RkRtrft~~Ql~~LE~~F~~-----~~~ps~~~r~~LA~~LgLs~rQ 208 (339)
.+|..+|.+|+..|++.|.. +.+.+..+...+.+.||+.+..
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPD 51 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCH
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccH
Confidence 35678999999999999974 5679999988888888876543
No 127
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=36.52 E-value=59 Score=20.87 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=20.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhh
Q 019530 232 LKRCCETLTEENRRLQKELQELRALK 257 (339)
Q Consensus 232 Lk~~~~~l~eEn~~l~~e~~~lralk 257 (339)
|...++.|..+|..|+.|+..|+.|-
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44455778889999999999998764
No 128
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=36.37 E-value=34 Score=25.37 Aligned_cols=49 Identities=8% Similarity=0.062 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 171 RLSKEQSAFLEESFKEH--NTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~~--~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
.++..+..+|...|-.. .-.+ -.+||..+|++...|+.|...-+.|.|+
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s---~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKT---LEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC---HHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCCCCCC---HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 47888889998887521 1222 3578999999999999988765555543
No 129
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=35.64 E-value=32 Score=26.31 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=31.6
Q ss_pred CccCCHHHHHHHHHHHhhc--CCCCH-HHHHHHHHHcCCCcccccchhhh
Q 019530 169 KLRLSKEQSAFLEESFKEH--NTLNP-KQKLALAKQLNLRPRQVEVWFQN 215 (339)
Q Consensus 169 Rtrft~~Ql~~LE~~F~~~--~~ps~-~~r~~LA~~LgLs~rQVqvWFQN 215 (339)
+.+|+.++....-..+... .+.+. ....++|.++|+++..|..|..-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 4568888776554444322 12332 35678999999999999999753
No 130
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=35.47 E-value=72 Score=24.56 Aligned_cols=31 Identities=29% Similarity=0.286 Sum_probs=22.9
Q ss_pred hhhhHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 019530 226 EVDCEYLKRCCETLTEENRRLQKELQELRAL 256 (339)
Q Consensus 226 ~~~~e~Lk~~~~~l~eEn~~l~~e~~~lral 256 (339)
-++++.|....+.+.+|...|+.++.+|+.+
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777888888887777755
No 131
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=34.24 E-value=75 Score=20.30 Aligned_cols=26 Identities=8% Similarity=0.162 Sum_probs=20.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhh
Q 019530 232 LKRCCETLTEENRRLQKELQELRALK 257 (339)
Q Consensus 232 Lk~~~~~l~eEn~~l~~e~~~lralk 257 (339)
|...++.|..+|..|+.|+..|+.|-
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33445778889999999999998764
No 132
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.14 E-value=73 Score=24.73 Aligned_cols=12 Identities=42% Similarity=0.786 Sum_probs=8.7
Q ss_pred ccCCCCCCcccC
Q 019530 271 LTMCPSCERVAT 282 (339)
Q Consensus 271 ~~~c~sC~~~~~ 282 (339)
...||.|++.-.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 347999987653
No 133
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=33.63 E-value=38 Score=23.99 Aligned_cols=48 Identities=8% Similarity=0.033 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHcCCCcccccchhhhhHHHHH
Q 019530 171 RLSKEQSAFLEESFKEH--NTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 221 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~~--~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~K 221 (339)
.++..+..+|...|-.. .-.+ -.++|..+|++...|+.|...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s---~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHT---LEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC---HHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCC---HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 47888999998888521 1122 357999999999999998865554444
No 134
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=33.28 E-value=60 Score=29.92 Aligned_cols=49 Identities=8% Similarity=0.046 Sum_probs=28.3
Q ss_pred cccccchhhhhHHHHHhhhhhhhhHHHHHhhhhhHHHHHHHHHHHHHHH
Q 019530 206 PRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR 254 (339)
Q Consensus 206 ~rQVqvWFQNRRaK~Krkq~~~~~e~Lk~~~~~l~eEn~~l~~e~~~lr 254 (339)
+++++.=++.+..+.........+++|+.....++.|..+|+.|+..|+
T Consensus 47 ~~~~~~~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 47 HAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp -----CCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444442222333334455566677777777788888888888877776
No 135
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.75 E-value=68 Score=24.52 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=21.7
Q ss_pred HhhhhhhhhHHHHHhhhhhHHHHHHHHHHHHHHH
Q 019530 221 KLKQTEVDCEYLKRCCETLTEENRRLQKELQELR 254 (339)
Q Consensus 221 Krkq~~~~~e~Lk~~~~~l~eEn~~l~~e~~~lr 254 (339)
..+..+.....+....+.|..+|+.|+.++++|+
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555566667777777777777664
No 136
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=32.13 E-value=1.3e+02 Score=24.80 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=40.6
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhhhhhHHHHHhhhhhHHHHHHHHH
Q 019530 169 KLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQK 248 (339)
Q Consensus 169 Rtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~~~~e~Lk~~~~~l~eEn~~l~~ 248 (339)
+..|+.+++..|... ...+.+|++-.+|+..+...+.... ....-.+.|....+.+.++..+|++
T Consensus 52 ~R~Y~~~dl~~l~~I-------------~~lr~~G~sL~eIk~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~i~~L~~ 116 (148)
T 3gpv_A 52 DRIFNEEALKYLEMI-------------LCLKNTGMPIQKIKQFIDWSMEGDS--TILHRLKLMKQQEANVLQLIQDTEK 116 (148)
T ss_dssp CEEBCHHHHHHHHHH-------------HHHHTTTCCHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeecCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999988543 3347788888888888875432211 1111223344444555555555555
Q ss_pred HHHHHH
Q 019530 249 ELQELR 254 (339)
Q Consensus 249 e~~~lr 254 (339)
.+..|.
T Consensus 117 ~~~~L~ 122 (148)
T 3gpv_A 117 NLKKIQ 122 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 137
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=31.52 E-value=1.3e+02 Score=24.36 Aligned_cols=73 Identities=11% Similarity=-0.008 Sum_probs=43.8
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhhhhhHHHHHhhhhhHHHHHHHHH
Q 019530 169 KLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQK 248 (339)
Q Consensus 169 Rtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~~~~e~Lk~~~~~l~eEn~~l~~ 248 (339)
...|+.+++..|... ...+.+|++..+|+.++........ ....-.+.|....+.+.++..+|+.
T Consensus 36 ~R~Y~~~dl~~l~~I-------------~~lr~~G~sl~eI~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~i~~L~~ 100 (135)
T 1q06_A 36 YRTYTQQHLNELTLL-------------RQARQVGFNLEESGELVNLFNDPQR--HSADVKRRTLEKVAEIERHIEELQS 100 (135)
T ss_dssp CEECCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHHHHCTTC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHHhhhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446999999888543 3347789998889888865432111 0111223445555566666666666
Q ss_pred HHHHHHHh
Q 019530 249 ELQELRAL 256 (339)
Q Consensus 249 e~~~lral 256 (339)
....|..+
T Consensus 101 ~~~~L~~~ 108 (135)
T 1q06_A 101 MRDQLLAL 108 (135)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 138
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=31.27 E-value=2e+02 Score=23.45 Aligned_cols=34 Identities=6% Similarity=0.049 Sum_probs=23.7
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhh
Q 019530 169 KLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQN 215 (339)
Q Consensus 169 Rtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQN 215 (339)
...|+.+++..|... ...+.+|++-..|+..+..
T Consensus 38 ~R~Y~~~dl~~l~~I-------------~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 38 VRKFGAEDLRWILFT-------------RQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp CBCBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHH
Confidence 457899999988554 2246677777777776654
No 139
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.79 E-value=93 Score=27.80 Aligned_cols=31 Identities=32% Similarity=0.303 Sum_probs=20.6
Q ss_pred hhhhHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 019530 226 EVDCEYLKRCCETLTEENRRLQKELQELRAL 256 (339)
Q Consensus 226 ~~~~e~Lk~~~~~l~eEn~~l~~e~~~lral 256 (339)
-.+++.|..+.+.+.+|...|++++.+|+.|
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777776666654
No 140
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=29.65 E-value=65 Score=23.21 Aligned_cols=27 Identities=30% Similarity=0.149 Sum_probs=17.4
Q ss_pred hhhhhHHHHHhhhhhHHHHHHHHHHHH
Q 019530 225 TEVDCEYLKRCCETLTEENRRLQKELQ 251 (339)
Q Consensus 225 ~~~~~e~Lk~~~~~l~eEn~~l~~e~~ 251 (339)
.+...+.|+..+..|..+...|+.++.
T Consensus 35 Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556677777777777777776653
No 141
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.14 E-value=1.1e+02 Score=22.60 Aligned_cols=42 Identities=31% Similarity=0.241 Sum_probs=22.8
Q ss_pred hhhhHHHHH-hhhhhhhhHHHHHhhhhhHHHHHHHHHHHHHHH
Q 019530 213 FQNRRARTK-LKQTEVDCEYLKRCCETLTEENRRLQKELQELR 254 (339)
Q Consensus 213 FQNRRaK~K-rkq~~~~~e~Lk~~~~~l~eEn~~l~~e~~~lr 254 (339)
.|||-+... +..++.-...|......|..++..+..|+..|+
T Consensus 14 ~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr 56 (70)
T 1gd2_E 14 AQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLR 56 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355544322 223334445555556666667777777766666
No 142
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=28.88 E-value=31 Score=29.30 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 171 RLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
.++..+..+|...|-... .-.+||..||++...|+.+...-|.+.|+
T Consensus 187 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEEL-----PAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCC-----CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 477888888877764321 24579999999999999988766555553
No 143
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=28.35 E-value=80 Score=23.71 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 019530 237 ETLTEENRRLQKELQELR 254 (339)
Q Consensus 237 ~~l~eEn~~l~~e~~~lr 254 (339)
..+.+|++.|+.++.+|+
T Consensus 57 ~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 57 RKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555544444
No 144
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=27.73 E-value=1.3e+02 Score=22.42 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=35.5
Q ss_pred HHHHHHHcCCCcccccchhhhhHHHHHhhhhhhhhHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 019530 195 KLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRA 255 (339)
Q Consensus 195 r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~~~~e~Lk~~~~~l~eEn~~l~~e~~~lra 255 (339)
....++.+|++-..|+..+..+..... .....-.+.|+...+.+.++..+|+.....|..
T Consensus 8 ~I~~lr~lGfsL~eIk~~l~~~~~~~~-~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~ 67 (99)
T 1q08_A 8 FIRHARQLGFSLESIRELLSIRIDPEH-HTCQESKGIVQERLQEVEARIAELQSMQRSLQR 67 (99)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHCGGG-CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688999999999999976532110 011122344555555666666666665555553
No 145
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=27.53 E-value=62 Score=24.40 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=34.0
Q ss_pred CCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHH
Q 019530 168 KKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 221 (339)
Q Consensus 168 kRtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~K 221 (339)
....||..+..+|.-.++ .+ ...+||..|+++++.|+....+-+.|..
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ---CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 345699999999988762 22 2467999999999999987765544443
No 146
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=27.50 E-value=1e+02 Score=20.06 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=19.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhh
Q 019530 232 LKRCCETLTEENRRLQKELQELRALK 257 (339)
Q Consensus 232 Lk~~~~~l~eEn~~l~~e~~~lralk 257 (339)
|....+.|..++..|+.|+..|+.+-
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44455677788888888888888653
No 147
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=27.07 E-value=55 Score=26.89 Aligned_cols=47 Identities=9% Similarity=-0.043 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 171 RLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
.++..+..+|.-.|-... .-.++|..+|++...|+.+...-|.+.|+
T Consensus 140 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 140 SLPEDLRMAITLRELDGL-----SYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp HSCHHHHHHHHHHHTTCC-----CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHcCC-----CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 367777777766554331 23579999999999999998766655553
No 148
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=26.87 E-value=30 Score=25.24 Aligned_cols=45 Identities=29% Similarity=0.341 Sum_probs=36.0
Q ss_pred ccCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCcccccchhh
Q 019530 170 LRLSKEQSAFLEESFKE-----HNTLNPKQKLALAKQLNLRPRQVEVWFQ 214 (339)
Q Consensus 170 trft~~Ql~~LE~~F~~-----~~~ps~~~r~~LA~~LgLs~rQVqvWFQ 214 (339)
..++.+++..|+..|.. +.+.+..+...+...+|++..+|+.+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 45788899999999864 4678888888888888988777777774
No 149
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.83 E-value=78 Score=22.11 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=15.8
Q ss_pred hhhhhHHHHHhhhhhHHHHHHHHHHH
Q 019530 225 TEVDCEYLKRCCETLTEENRRLQKEL 250 (339)
Q Consensus 225 ~~~~~e~Lk~~~~~l~eEn~~l~~e~ 250 (339)
.+.+++.|+..++.|.++++.++.++
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666554
No 150
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=26.68 E-value=1e+02 Score=19.85 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=19.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHh
Q 019530 232 LKRCCETLTEENRRLQKELQELRAL 256 (339)
Q Consensus 232 Lk~~~~~l~eEn~~l~~e~~~lral 256 (339)
|....+.|..+|..|..|+..|+.|
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHH
Confidence 3344567788899999999999876
No 151
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=26.53 E-value=40 Score=24.92 Aligned_cols=44 Identities=11% Similarity=0.217 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCcccccchhh
Q 019530 171 RLSKEQSAFLEESFKE-----HNTLNPKQKLALAKQLNLRPRQVEVWFQ 214 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~-----~~~ps~~~r~~LA~~LgLs~rQVqvWFQ 214 (339)
.++.++...+++.|.. +.+.+..+-..+...+|++...|+.+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678899999999975 4567888888887888888777766554
No 152
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=26.45 E-value=24 Score=23.83 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=22.0
Q ss_pred HHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 196 LALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 196 ~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
.++|..+|+++..|+.+..+-+.|.+.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 479999999999999988766655553
No 153
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=24.41 E-value=1.3e+02 Score=19.33 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=19.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhh
Q 019530 233 KRCCETLTEENRRLQKELQELRALK 257 (339)
Q Consensus 233 k~~~~~l~eEn~~l~~e~~~lralk 257 (339)
....+.|..+|..|..|+..|+.|-
T Consensus 7 EdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 7 EDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445777888999999999998763
No 154
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=23.99 E-value=42 Score=22.23 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=26.8
Q ss_pred cCC--HHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhh
Q 019530 171 RLS--KEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQ 214 (339)
Q Consensus 171 rft--~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQ 214 (339)
.++ .++...+...|... + ...++|+.+|++...|..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 355 55655555555432 2 245799999999999999875
No 155
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=23.95 E-value=39 Score=27.65 Aligned_cols=46 Identities=22% Similarity=0.207 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 172 LSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 172 ft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
++..+..+|.-.|-..-.. .+||..||+++..|+.|...-|.+.|+
T Consensus 136 L~~~~r~vl~l~~~~g~s~-----~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDLTH-----RELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCHHHHHHHHHHHHSCCSS-----CCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCH-----HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 6677777776655433211 368999999999999998866655553
No 156
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=23.95 E-value=50 Score=28.81 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=35.4
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHH
Q 019530 169 KLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 221 (339)
Q Consensus 169 Rtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~K 221 (339)
...+|..+.++|.-.++-. .-.++|..||++++.|+.+..|-+.|..
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4569999999997754221 2357999999999999998886665554
No 157
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=23.71 E-value=1.6e+02 Score=22.64 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=40.1
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhhhhhHHHHHhhhhhHHHHHHHHH
Q 019530 169 KLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQK 248 (339)
Q Consensus 169 Rtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~~~~e~Lk~~~~~l~eEn~~l~~ 248 (339)
+..|+.+++..|... ...+.+|++...|+.++..... ...+.|....+.+.++..+|+.
T Consensus 37 ~R~Y~~~dl~~l~~I-------------~~lr~~G~sl~~I~~~l~~~~~--------~~~~~l~~~~~~l~~~i~~l~~ 95 (108)
T 2vz4_A 37 HRRYSDADLDRLQQI-------------LFYRELGFPLDEVAALLDDPAA--------DPRAHLRRQHELLSARIGKLQK 95 (108)
T ss_dssp CEEBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHTC-------------CCHHHHHHHHHHHHHHHHHH
T ss_pred CeecCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHhCCcH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999888543 2246788888888888865321 1123455555556666666666
Q ss_pred HHHHHHH
Q 019530 249 ELQELRA 255 (339)
Q Consensus 249 e~~~lra 255 (339)
.+..+..
T Consensus 96 ~~~~l~~ 102 (108)
T 2vz4_A 96 MAAAVEQ 102 (108)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555553
No 158
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=23.38 E-value=1.7e+02 Score=24.09 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=39.4
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhhhhhHHHHHhhhhhHHHHHHHHH
Q 019530 169 KLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQK 248 (339)
Q Consensus 169 Rtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~~~~e~Lk~~~~~l~eEn~~l~~ 248 (339)
+..|+..++..|... ...+.+|++-..|+..+..... ......+.|....+.|.++..+|+.
T Consensus 40 ~R~Y~~~dl~~l~~I-------------~~lr~~G~sl~~I~~~l~~~~~-----~~~~~~~~L~~q~~~L~~~i~~l~~ 101 (146)
T 3hh0_A 40 HRLYTKDDLYVLQQI-------------QSFKHLGFSLGEIQNIILQRDI-----ETEVFLRQMHFQREVLLAEQERIAK 101 (146)
T ss_dssp CEEBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHTSSEE-----EHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeeCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHccCC-----CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999988543 2345677777777777764321 1111223344445555556666665
Q ss_pred HHHHHH
Q 019530 249 ELQELR 254 (339)
Q Consensus 249 e~~~lr 254 (339)
.+..+.
T Consensus 102 ~l~~l~ 107 (146)
T 3hh0_A 102 VLSHMD 107 (146)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555555
No 159
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.10 E-value=99 Score=22.96 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 019530 237 ETLTEENRRLQKELQELR 254 (339)
Q Consensus 237 ~~l~eEn~~l~~e~~~lr 254 (339)
..+..|.+.|+.++..|+
T Consensus 57 ~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 57 HTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 160
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=22.80 E-value=50 Score=24.53 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCcccccchhh
Q 019530 172 LSKEQSAFLEESFKE-----HNTLNPKQKLALAKQLNLRPRQVEVWFQ 214 (339)
Q Consensus 172 ft~~Ql~~LE~~F~~-----~~~ps~~~r~~LA~~LgLs~rQVqvWFQ 214 (339)
++.++...|++.|.. +.+.+..+...+...+|++...|+.+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 577888999999864 4668888888888888888877776664
No 161
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=22.76 E-value=60 Score=25.30 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=31.2
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhh
Q 019530 170 LRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNR 216 (339)
Q Consensus 170 trft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNR 216 (339)
..++.++...+...+... + + ..++|+.||++...|..|++.-
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~-s---~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V-S---LHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C-C---HHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcC-C-C---HHHHHHHHCcCHHHHHHHHHcc
Confidence 457787777776666543 2 2 4578999999999999999753
No 162
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=21.68 E-value=1.6e+02 Score=22.73 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHh
Q 019530 171 RLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 222 (339)
Q Consensus 171 rft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Kr 222 (339)
.++..|..++.-.|-.+.+ ....-.++|..+|++...|+.+...-+.+.|+
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4677788888877753211 11234579999999999998887655555443
No 163
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.34 E-value=1.1e+02 Score=24.23 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=20.1
Q ss_pred hhhHHHHHhhhhhHHHHHHHHHHHHHHH
Q 019530 227 VDCEYLKRCCETLTEENRRLQKELQELR 254 (339)
Q Consensus 227 ~~~e~Lk~~~~~l~eEn~~l~~e~~~lr 254 (339)
.+...|+...+.|..|+++|.+++..|.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777778888877777665
No 164
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=20.80 E-value=24 Score=23.67 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCcccccchhhhhH
Q 019530 195 KLALAKQLNLRPRQVEVWFQNRR 217 (339)
Q Consensus 195 r~~LA~~LgLs~rQVqvWFQNRR 217 (339)
..+||+.+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998764
No 165
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.69 E-value=1e+02 Score=27.22 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=36.2
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhh
Q 019530 170 LRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 223 (339)
Q Consensus 170 trft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krk 223 (339)
..++..+..+|.-.++ .+ + -.++|..||+++..|++...+-|.|.|..
T Consensus 196 ~~L~~~erevl~L~~~--G~-s---~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIRK--GL-S---SKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHHT--TC-C---HHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHHc--CC-C---HHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 4689999999888642 22 2 45799999999999999888766666543
No 166
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=20.55 E-value=2.6e+02 Score=21.39 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=40.1
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccccchhhhhHHHHHhhhhhhhhHHHHHhhhhhHHHHHHHHH
Q 019530 169 KLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQK 248 (339)
Q Consensus 169 Rtrft~~Ql~~LE~~F~~~~~ps~~~r~~LA~~LgLs~rQVqvWFQNRRaK~Krkq~~~~~e~Lk~~~~~l~eEn~~l~~ 248 (339)
+..|+.+++..|... ...+.+|++..+|+..+.+... ...+.|....+.+.++..+|+.
T Consensus 38 ~R~Y~~~dl~~l~~I-------------~~l~~~G~~l~~I~~~l~~~~~--------~~~~~l~~~~~~l~~~i~~l~~ 96 (109)
T 1r8d_A 38 YRLYSDADLERLQQI-------------LFFKEIGFRLDEIKEMLDHPNF--------DRKAALQSQKEILMKKKQRMDE 96 (109)
T ss_dssp CEEBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHCTTS--------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHhCCCH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 346999999988643 2236677777777777754211 1123455555666666666666
Q ss_pred HHHHHHH
Q 019530 249 ELQELRA 255 (339)
Q Consensus 249 e~~~lra 255 (339)
.+..+..
T Consensus 97 ~~~~l~~ 103 (109)
T 1r8d_A 97 MIQTIDR 103 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665553
No 167
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.26 E-value=1.4e+02 Score=19.33 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=18.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhh
Q 019530 232 LKRCCETLTEENRRLQKELQELRALK 257 (339)
Q Consensus 232 Lk~~~~~l~eEn~~l~~e~~~lralk 257 (339)
|....+.|..++..|..|+..|+.+-
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 33445667778888888888888653
Done!