BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019532
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
pdb|4AAP|B Chain B, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
Length = 239
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 97/158 (61%), Gaps = 5/158 (3%)
Query: 153 SLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVP 212
S+ K V + SL+ F ++ + G PVI+ HWP W+ L+Y++ +AG RTVP
Sbjct: 1 SMLEKTVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWS-LEYIQEIAGCRTVP 59
Query: 213 VEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDY 272
VEVG Y ++W Q L+ ++F+ + N YLAQHQLFDQI EL+ DI IPDY
Sbjct: 60 VEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDV--GYLAQHQLFDQIPELKQDISIPDY 117
Query: 273 CFVGGGELR--SLNAWFGPAGTVTPLHHDPHHNILAQV 308
C +G GE ++NAWFGP GT++PLH DP N L QV
Sbjct: 118 CSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQV 155
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
pdb|3UYJ|B Chain B, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
Length = 248
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 101/165 (61%), Gaps = 6/165 (3%)
Query: 146 LQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRV 205
+ ++P+ L K V + SL+ F ++ + G PVI+ HWP W+ L+Y++ +
Sbjct: 4 MGLIPDVKLE-KTVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWS-LEYIQEI 61
Query: 206 AGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRN 265
AG RTVPVEVG Y ++W Q L+ ++F+ + N YLAQHQLFDQI EL+
Sbjct: 62 AGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDV--GYLAQHQLFDQIPELKQ 119
Query: 266 DICIPDYCFVGGGELR--SLNAWFGPAGTVTPLHHDPHHNILAQV 308
DI IPDYC +G GE ++NAWFGP GT++PLH DP N L QV
Sbjct: 120 DISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQV 164
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate
Length = 235
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 92/145 (63%), Gaps = 5/145 (3%)
Query: 166 SLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWK 225
SL+ F ++ + G PVI+ HWP W+ L+Y++ +AG RTVPVEVG Y ++W
Sbjct: 10 SLQHFREQFLVPGRPVILKGVADHWPCMQKWS-LEYIQEIAGCRTVPVEVGSRYTDEEWS 68
Query: 226 QELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELR--SL 283
Q L+ ++F+ + N YLAQHQLFDQI EL+ DI IPDYC +G GE ++
Sbjct: 69 QTLMTVNEFISKYIVNEPRDV--GYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITI 126
Query: 284 NAWFGPAGTVTPLHHDPHHNILAQV 308
NAWFGP GT++PLH DP N L QV
Sbjct: 127 NAWFGPQGTISPLHQDPQQNFLVQV 151
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine
Length = 235
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 91/145 (62%), Gaps = 5/145 (3%)
Query: 166 SLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWK 225
SL+ F ++ + G PVI+ HWP W+ L+Y++ +AG RTVPVEVG Y ++W
Sbjct: 10 SLQHFREQFLVPGRPVILKGVADHWPCXQKWS-LEYIQEIAGCRTVPVEVGSRYTDEEWS 68
Query: 226 QELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELR--SL 283
Q L ++F+ + N YLAQHQLFDQI EL+ DI IPDYC +G GE ++
Sbjct: 69 QTLXTVNEFISKYIVNEPRDV--GYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITI 126
Query: 284 NAWFGPAGTVTPLHHDPHHNILAQV 308
NAWFGP GT++PLH DP N L QV
Sbjct: 127 NAWFGPQGTISPLHQDPQQNFLVQV 151
>pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2
(Tnks2) Fragment Peptide (21-Mer)
pdb|2YC0|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
R-2-Hydroxyglutarate
pdb|2YDE|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
S-2-Hydroxyglutarate
pdb|4AI8|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Daminozide
Length = 352
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 179 SPVIITDCMAHWPARTNWNDLDYLKR--VAGDRTVPVEVGKNYLCQDWKQ---------- 226
PV++TD +PA W DL+YL+ GD +V +L D K+
Sbjct: 63 EPVVLTDTNLVYPA-LKW-DLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPR 120
Query: 227 ---ELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQIN-ELRNDICIPDYCFV------- 275
E + F +F+E++Q Q L D + ++ D ++ ++
Sbjct: 121 SNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKR 180
Query: 276 GGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLY 311
G G+L S G G VTP H+D N AQ+ Y
Sbjct: 181 GWGQLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGY 216
>pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 349
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 179 SPVIITDCMAHWPARTNWNDLDYLKRV--AGDRTVPVEVGKNYLCQDWKQ---------- 226
PV++TD +PA W DL+YL+ GD +V +L D K+
Sbjct: 60 EPVVLTDTNLVYPA-LKW-DLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPR 117
Query: 227 ---ELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQIN-ELRNDICIPDYCFV------- 275
E + F +F+E++Q Q L D + ++ D ++ ++
Sbjct: 118 SNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKR 177
Query: 276 GGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLY 311
G G+L S G G VTP H+D N AQ+ Y
Sbjct: 178 GWGQLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGY 213
>pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2L|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2M|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2N|A Chain A, Factor Inhibiting Hif-1 Alpha
pdb|1YCI|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
N-(Carboxycarbonyl)-D- Phenylalanine
pdb|2CGN|A Chain A, Factor Inhibiting Hif-1 Alpha With Succinate
pdb|2CGO|A Chain A, Factor Inhibiting Hif-1 Alpha With Fumarate
pdb|2W0X|A Chain A, Factor Inhibiting Hif-1 Alpha With Pyridine 2,4
Dicarboxylic Acid
pdb|2WA3|A Chain A, Factor Inhibiting Hif-1 Alpha With 2-(3-Hydroxyphenyl)-2-
Oxoacetic Acid
pdb|2WA4|A Chain A, Factor Inhibiting Hif-1 Alpha With N,3-Dihydroxybenzamide
pdb|3P3N|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1930-1949) Peptide
pdb|3P3P|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1997-2016) Peptide
pdb|3OD4|A Chain A, Crystal Structure Of Factor Inhibiting Hif-1 Alpha
Complexed With Inhibitor
pdb|4B7E|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-leu Peptide (20-mer)
pdb|4B7K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 349
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 179 SPVIITDCMAHWPARTNWNDLDYLKRV--AGDRTVPVEVGKNYLCQDWKQ---------- 226
PV++TD +PA W DL+YL+ GD +V +L D K+
Sbjct: 60 EPVVLTDTNLVYPA-LKW-DLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPR 117
Query: 227 ---ELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQIN-ELRNDICIPDYCFV------- 275
E + F +F+E++Q Q L D + ++ D ++ ++
Sbjct: 118 SNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKR 177
Query: 276 GGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLY 311
G G+L S G G VTP H+D N AQ+ Y
Sbjct: 178 GWGQLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGY 213
>pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1)
pdb|1MZF|A Chain A, Human Factor Inhibiting Hif (Fih1) In Complex With
2-Oxoglutarate
Length = 351
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 179 SPVIITDCMAHWPARTNWNDLDYLKR--VAGDRTVPVEVGKNYLCQDWKQ---------- 226
PV++TD +PA W DL+YL+ GD +V +L D K+
Sbjct: 62 EPVVLTDTNLVYPA-LKW-DLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPR 119
Query: 227 ---ELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQIN-ELRNDICIPDYCFV------- 275
E + F +F+E++Q Q L D + ++ D ++ ++
Sbjct: 120 SNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKR 179
Query: 276 GGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLY 311
G G+L S G G VTP H+D N AQ+ Y
Sbjct: 180 GWGQLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGY 215
>pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol
pdb|3KCY|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
8-Hydroxyquino
Length = 335
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 179 SPVIITDCMAHWPARTNWNDLDYLKRV--AGDRTVPVEVGKNYLCQDWKQ---------- 226
PV++TD +PA W DL+YL+ GD +V +L D K+
Sbjct: 46 EPVVLTDTNLVYPA-LKW-DLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPR 103
Query: 227 ---ELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQIN-ELRNDICIPDYCFV------- 275
E + F +F+E++Q Q L D + ++ D ++ ++
Sbjct: 104 SNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKR 163
Query: 276 GGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLY 311
G G+L S G G VTP H+D N AQ+ Y
Sbjct: 164 GWGQLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGY 199
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif)
Length = 349
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 25/156 (16%)
Query: 179 SPVIITDCMAHWPARTNWNDLDYLKR--VAGDRTVPVEVGKNYLCQDWKQ---------- 226
PV++TD +PA W DL+YL+ GD +V +L D K+
Sbjct: 60 EPVVLTDTNLVYPA-LKW-DLEYLQENIGNGDFSVYSASTHKFLYYDEKKXANFQNFKPR 117
Query: 227 ---ELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQIN-ELRNDICIPDYCFV------- 275
E F +F+E++Q Q L D + ++ D ++ ++
Sbjct: 118 SNREEXKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGGKIVXDFLGFNWNWINKQQGKR 177
Query: 276 GGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLY 311
G G+L S G G VTP H+D N AQ+ Y
Sbjct: 178 GWGQLTSNLLLIGXEGNVTPAHYDEQQNFFAQIKGY 213
>pdb|3D8C|A Chain A, Factor Inhibiting Hif-1 Alpha D201g Mutant In Complex With
Zn(Ii), Alpha-Ketoglutarate And Hif-1 Alpha 19mer
Length = 349
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 25/156 (16%)
Query: 179 SPVIITDCMAHWPARTNWNDLDYLKR--VAGDRTVPVEVGKNYLCQDWKQ---------- 226
PV++TD +PA W DL+YL+ GD +V +L D K+
Sbjct: 60 EPVVLTDTNLVYPA-LKW-DLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPR 117
Query: 227 ---ELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQIN-ELRNDICIPDYCFV------- 275
E + F +F+E++Q Q L D + ++ D ++ ++
Sbjct: 118 SNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKR 177
Query: 276 GGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLY 311
G G+L S G G VTP H+ N AQ+ Y
Sbjct: 178 GWGQLTSNLLLIGMEGNVTPAHYGEQQNFFAQIKGY 213
>pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With
Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer
Length = 349
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 25/156 (16%)
Query: 179 SPVIITDCMAHWPARTNWNDLDYLKR--VAGDRTVPVEVGKNYLCQDWKQ---------- 226
PV++TD +PA W DL+YL+ GD +V +L D K+
Sbjct: 60 EPVVLTDTNLVYPA-LKW-DLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPR 117
Query: 227 ---ELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQIN-ELRNDICIPDYCFV------- 275
E + F +F+E++Q Q L D + ++ D ++ ++
Sbjct: 118 SNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKR 177
Query: 276 GGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLY 311
G G+L S G G VTP H+ N AQ+ Y
Sbjct: 178 GWGQLTSNLLLIGMEGNVTPAHYAEQQNFFAQIKGY 213
>pdb|1MW7|A Chain A, X-Ray Structure Of Y162_helpy Northeast Structural
Genomics Consortium Target Pr6
Length = 240
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 142 TAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSP----VIITDCMAHWPARTNWN 197
AKA Q +P ++ +KR++ S EG LSE G +II +CM P RT N
Sbjct: 53 NAKA-QNMPKDNIDA--AIKRAS-SKEGNLSEITYEGKANFGVLIIMECMTDNPTRTIAN 108
Query: 198 DLDYLKRVAGDRTVP 212
Y + G VP
Sbjct: 109 LKSYFNKTQGASIVP 123
>pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|A Chain A, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 334
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Query: 165 LSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDW 224
LS+E F+ Y PV++ + W A+ W L+ LKR R + G++
Sbjct: 54 LSVEEFVERYERPYKPVVLLNAQEGWSAQEKWT-LERLKRKY--RNQKFKCGEDNDGYSV 110
Query: 225 KQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIP----DYCFVGGGEL 280
K ++ + +++E + + + +H + +L D +P D F GE
Sbjct: 111 KMKMKYYIEYMESTRDDSPLYIFDSSYGEHP---KRRKLLEDYKVPKFFTDDLFQYAGEK 167
Query: 281 RSLN-AWF--GPAGTVTPLHHDP 300
R WF GP + T +H DP
Sbjct: 168 RRPPYRWFVMGPPRSGTGIHIDP 190
>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Paratuberculosis
Length = 291
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 181 VIITDCMAHWPARTNWNDLDYLKR 204
V+ MAHWP R N DL++ R
Sbjct: 134 VVTVSSMAHWPGRINLEDLNWRSR 157
>pdb|3K2O|A Chain A, Structure Of An Oxygenase
pdb|3K2O|B Chain B, Structure Of An Oxygenase
Length = 336
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 165 LSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDW 224
LS+E F+ Y PV++ + W A+ W L+ LKR R + G++
Sbjct: 55 LSVEEFVERYERPYKPVVLLNAQEGWSAQEKWT-LERLKRKY--RNQKFKCGEDNDGYSV 111
Query: 225 KQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIP----DYCFVGGGEL 280
K + + ++ E + + + +H + +L D +P D F GE
Sbjct: 112 KXKXKYYIEYXESTRDDSPLYIFDSSYGEHP---KRRKLLEDYKVPKFFTDDLFQYAGEK 168
Query: 281 RSLN-AWF--GPAGTVTPLHHDP 300
R WF GP + T +H DP
Sbjct: 169 RRPPYRWFVXGPPRSGTGIHIDP 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,297,947
Number of Sequences: 62578
Number of extensions: 360134
Number of successful extensions: 831
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 16
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)