Query 019532
Match_columns 339
No_of_seqs 247 out of 1155
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:30:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2132 Uncharacterized conser 100.0 2.4E-55 5.2E-60 413.2 15.0 273 45-327 22-299 (355)
2 PF13621 Cupin_8: Cupin-like d 99.9 5.7E-27 1.2E-31 215.6 7.9 155 167-321 1-171 (251)
3 KOG2508 Predicted phospholipas 99.9 1.4E-22 3E-27 193.3 9.6 162 159-321 24-202 (437)
4 KOG2130 Phosphatidylserine-spe 99.8 5.1E-20 1.1E-24 173.3 7.8 160 152-319 49-219 (407)
5 KOG2131 Uncharacterized conser 98.9 9.8E-10 2.1E-14 106.1 4.8 163 157-320 28-239 (427)
6 COG2850 Uncharacterized conser 97.7 8E-05 1.7E-09 72.9 7.1 143 162-319 12-157 (383)
7 smart00558 JmjC A domain famil 97.1 0.00056 1.2E-08 49.4 3.3 28 283-310 28-57 (57)
8 PF08007 Cupin_4: Cupin superf 97.0 0.00062 1.4E-08 66.2 3.8 37 282-318 115-152 (319)
9 KOG1356 Putative transcription 79.7 2.5 5.3E-05 46.0 4.6 136 165-306 528-699 (889)
10 KOG3706 Uncharacterized conser 76.6 1.7 3.6E-05 44.6 2.2 40 281-320 317-357 (629)
11 PF12854 PPR_1: PPR repeat 37.2 51 0.0011 20.8 3.2 27 67-95 6-32 (34)
12 PF02373 JmjC: JmjC domain, hy 35.1 16 0.00034 29.1 0.5 29 285-313 2-33 (114)
13 cd03572 ENTH_epsin_related ENT 23.0 1.5E+02 0.0033 24.9 4.5 69 24-117 18-86 (122)
No 1
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-55 Score=413.20 Aligned_cols=273 Identities=40% Similarity=0.578 Sum_probs=222.5
Q ss_pred HHHHHHhhhccccCCCCCcHHHHHHHHHHHHHHhhhccCccHHHHHHHhHhHhhccCCcChhhHHHHHHHHHhHhhcCCc
Q 019532 45 ARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSLKAREGEN 124 (339)
Q Consensus 45 ~~~~a~ekL~~g~w~~V~~~wR~~Y~~~~l~~a~~~~~~~~~~~~i~~lD~~limgg~~~~~~l~~~~~~~~~~~~~~~~ 124 (339)
++++||||||||||++|+..||++|+++|++++++.++++.+.+|++ ||||+|||+......+....+.+. .+..
T Consensus 22 ~l~~awe~l~tg~~~~v~~~wr~~y~~~c~~~~~~~~~~~~~~~al~-~D~gllmg~~~~~d~~l~va~~~~----~~~~ 96 (355)
T KOG2132|consen 22 ALDPAWEKLNTGHWSFVDRVWRRLYAIACLAKALIEFQAPLVYAALK-LDMGLLMGNIGLGDSLLKVASELK----FGYY 96 (355)
T ss_pred ccCchhhhhccCccccCCchHHHHHHHHHHHHHHhhcccchhHHHHh-hCHHHHhhchhcchHHHHHHHHhh----ccCc
Confidence 58999999999999999999999999999999999999999999999 999999999876333322222221 1110
Q ss_pred ccccccccccchhhhhhhhhhcccCCCCCcCcCcccccCCCCHHHHHHhhhcCCCcEEEecCCCCCccccCCCCHhHHHH
Q 019532 125 ERFGEREANRLVSEEFNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKR 204 (339)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~I~R~~~~S~e~F~~~y~~~~~PvVI~g~~~~WPA~~kWs~~dYL~~ 204 (339)
+...-...-...+ +.........+|.... +..+++.+.+++++|..+++.+++|+++.|.+.||||+++|+ ++||.+
T Consensus 97 ~~~~~~~~~~~~p-~~e~~~~~~~ip~~~~-~~~~~~~~~~~l~~~l~d~~~~~~p~~~l~~~~hwpa~~kw~-l~~l~~ 173 (355)
T KOG2132|consen 97 SDKPAAVALNFKP-NREENKVHEFIPKVQL-EIDVPGEDRLSLQEFLNDTVGRGTPVILLGFNWHWPAIQKWS-LGYLQQ 173 (355)
T ss_pred ccchhhhhccCCC-Cccccccccccchhhh-hhhhccccchHHHHHHHHhhcCCCceEEecccccchHhhhcc-hhHHHh
Confidence 0000000000000 1112223444665543 567888899999999999999999999999999999999996 999999
Q ss_pred HhCCccEEEEecCccccCCceeeeecHHHHHHHHHhCCCCCCccchhccchhhhhhHHhhhccCCCCccccCCCCC--cc
Q 019532 205 VAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGEL--RS 282 (339)
Q Consensus 205 ~~G~r~VpVe~g~~y~~~~w~q~~mt~~eFl~~~~~~~~~~~~~~YLaq~~L~~qiP~L~~Di~iPdy~~~~~~~~--~~ 282 (339)
..|.|+||||+|.+|.+++|+|..|++.+|+.+....+ +.++.|+|||.+|+|+|+|+.||.+||||+..+.+. ..
T Consensus 174 va~~rTvpvEvg~~y~~~~w~q~l~t~~~g~~R~~~~~--p~~~~YlAqh~lfdqi~elk~Di~iPDyc~~~~f~~~~v~ 251 (355)
T KOG2132|consen 174 VAGNRTVPVEVGSTYADEDWSQNLMTQIKGIKRCILFE--PRECLYLAQHHLFDQIPELKFDISIPDYCSFPNFENEVVD 251 (355)
T ss_pred cccceeeeeecccccchhHHHhhhHHHhhhhhhhhcCC--ccccchhhhhhhhccchhhhhccCCCceeecCCCCccccc
Confidence 99999999999999999999999999999999998876 447899999999999999999999999998765554 68
Q ss_pred ceEEEcCCCCCCccccCCCCCeeEEEEEEEeeecCC---CcccccccC
Q 019532 283 LNAWFGPAGTVTPLHHDPHHNILAQVSLYCALSQRT---STFRRLWLN 327 (339)
Q Consensus 283 ~n~WiGp~gT~TPLH~Dp~~Nll~QV~G~Kr~~~~~---~~~~~~~~~ 327 (339)
+|+|+||+||+||+|+|++||+++||.|+|++.++. ++++|...+
T Consensus 252 ~~~w~GpaGtV~pih~dp~hNi~~qv~G~k~i~l~~p~~s~~lyP~d~ 299 (355)
T KOG2132|consen 252 INAWIGPAGTVLPIHMDPWHNILSQVFGRKRIRLYPPEDSGALYPTDT 299 (355)
T ss_pred eeEEeccCCceeccccccccceeeeeecceEEEEecCcccCCCCCccc
Confidence 999999999999999999999999999999965554 566777654
No 2
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=99.94 E-value=5.7e-27 Score=215.56 Aligned_cols=155 Identities=37% Similarity=0.611 Sum_probs=119.2
Q ss_pred HHHHHHhhhcCCCcEEEecCCCCCccccCCCC----HhHHHHHhCCccEEEEecCc-----cc------cCCceeeeecH
Q 019532 167 LEGFLSEYFLSGSPVIITDCMAHWPARTNWND----LDYLKRVAGDRTVPVEVGKN-----YL------CQDWKQELIPF 231 (339)
Q Consensus 167 ~e~F~~~y~~~~~PvVI~g~~~~WPA~~kWs~----~dYL~~~~G~r~VpVe~g~~-----y~------~~~w~q~~mt~ 231 (339)
|++|.++|+.+++||||+|++.+|||+++|++ ++||.+.+|+..|+|..... +. ........|+|
T Consensus 1 p~eF~~~~~~~~~PvVi~g~~~~w~a~~~W~~~~~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PF13621_consen 1 PEEFFERYVKPNKPVVIRGAAADWPAFQKWTDDEYLLDYLKEKYGDVPVPVRDSPNGISDSFGYNDDRKFVNFERERMPF 80 (251)
T ss_dssp -HHHHHHTCCTT--EEEESSSTTCCHHHH-S-----HHHHHHHHTSSEEEEEEEST--SSBTS-B-GCCCTCEEEEEEEH
T ss_pred CHHHHHHHhCCCCCEEEeCCccCCchhhhccchhHHHHHHHHHcCCeEEEEEecCCcccccccccccccccCCeeEECcH
Confidence 68999999999999999999999999999995 69999999999999985431 21 11246789999
Q ss_pred HHHHHHHHhCCCC-CCccchhccchhhhhhHHhhhccCCCCccccCCCCCccceEEEcCCCCCCccccCCCCCeeEEEEE
Q 019532 232 SQFLERIQSNGSS-ASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSL 310 (339)
Q Consensus 232 ~eFl~~~~~~~~~-~~~~~YLaq~~L~~qiP~L~~Di~iPdy~~~~~~~~~~~n~WiGp~gT~TPLH~Dp~~Nll~QV~G 310 (339)
++|++.+...... .....|+.+..+.+.+|.|.+|..+|.............++|||++|++||+|+|+.+|++|||.|
T Consensus 81 ~~f~~~~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ig~~gs~t~lH~D~~~n~~~~i~G 160 (251)
T PF13621_consen 81 RDFLDRLRANRDQRDKPYYYLQNWNLFEDFPELREDNDLPFPPELFGKEPQSSNLWIGPPGSFTPLHYDPSHNLLAQIRG 160 (251)
T ss_dssp HHHHHHHHHSCHSTSSSEEEEEEETHHHHSHHHHCCS-CHHHHCHSCCHCCEEEEEEE-TTEEEEEEE-SSEEEEEEEES
T ss_pred HHHHHHHHhcccccCCceEEEecCchHHHhhhhhhccccccchhhcccCccccEEEEeCCCceeeeeECchhhhhhccCC
Confidence 9999999887521 346799999999999999999866653211112234578999999999999999999999999999
Q ss_pred EEeeecCCCcc
Q 019532 311 YCALSQRTSTF 321 (339)
Q Consensus 311 ~Kr~~~~~~~~ 321 (339)
+|+|.+++|+.
T Consensus 161 ~K~~~L~pP~~ 171 (251)
T PF13621_consen 161 RKRWILFPPDD 171 (251)
T ss_dssp EEEEEEE-GGG
T ss_pred CEEEEEECCcc
Confidence 99977777644
No 3
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=99.87 E-value=1.4e-22 Score=193.30 Aligned_cols=162 Identities=23% Similarity=0.374 Sum_probs=125.6
Q ss_pred cccc-CCCCHHHHHHhhhcCCCcEEEecCCCCCccccCCCCHhHHHHHhCCccEEEEecCccccCC--ce---------e
Q 019532 159 VVKR-SALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQD--WK---------Q 226 (339)
Q Consensus 159 I~R~-~~~S~e~F~~~y~~~~~PvVI~g~~~~WPA~~kWs~~dYL~~~~G~r~VpVe~g~~y~~~~--w~---------q 226 (339)
|.+. ..||+-+|.++|+.+++||||+.+..||||+++|+.++||.+..|++.|.|+++.+...++ -+ .
T Consensus 24 v~~lD~~Ptpl~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~p~Yl~~algd~vvsvaitPngyadgav~~g~e~f~~pae 103 (437)
T KOG2508|consen 24 VNLLDLTPTPLDFYRKFVSTNTPVIIRKALPHWPALKLWSQPDYLLSALGDIVVSVAITPNGYADGAVMSGNEMFIKPAE 103 (437)
T ss_pred cccccCCCchHHHHHhhhcCCCcEEEecccccCchhhccCchHHHHHhccCeEEEEEeCCCCccccccccCcceeechhh
Confidence 3444 3689999999999999999999999999999999988899999999999999976533321 11 1
Q ss_pred eeecHHHHHHHHHhCCCCCCccchhcc--chhhhhhHHhhhccCCCCcccc---CCCCCccceEEEcCCCCCCccccCCC
Q 019532 227 ELIPFSQFLERIQSNGSSASVPTYLAQ--HQLFDQINELRNDICIPDYCFV---GGGELRSLNAWFGPAGTVTPLHHDPH 301 (339)
Q Consensus 227 ~~mt~~eFl~~~~~~~~~~~~~~YLaq--~~L~~qiP~L~~Di~iPdy~~~---~~~~~~~~n~WiGp~gT~TPLH~Dp~ 301 (339)
++|+++|-++.+.... .....+|+++ .+|...+|.|..|...-|+-++ .+..++..|+|||...++|.||.|+|
T Consensus 104 ~KlklsevL~vl~~~~-~~~~Vly~qkQ~snl~~elp~la~Dl~~~d~~wa~eafgk~PdavNlWiG~~~avTSlHkDhy 182 (437)
T KOG2508|consen 104 QKLKLSEVLYVLTQYD-ESNEVLYGQKQNSNLVKELPPLATDLLLTDFSWAPEAFGKVPDAVNLWIGKSEAVTSLHKDHY 182 (437)
T ss_pred hhccchhhheehhccc-CCCceeehhhhcccccccccccccccccccccccHHHhCCChhheeeeecccccccccccccc
Confidence 3566666666655443 2556899975 3677788888877766554332 12345688999999999999999999
Q ss_pred CCeeEEEEEEEeeecCCCcc
Q 019532 302 HNILAQVSLYCALSQRTSTF 321 (339)
Q Consensus 302 ~Nll~QV~G~Kr~~~~~~~~ 321 (339)
+|++|.|.|.|+|-.-+|+.
T Consensus 183 ENlYaViSGeKhFvlipP~d 202 (437)
T KOG2508|consen 183 ENLYAVISGEKHFVLIPPDD 202 (437)
T ss_pred cceEEEEeccceEEEeCccc
Confidence 99999999999976655543
No 4
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=99.80 E-value=5.1e-20 Score=173.34 Aligned_cols=160 Identities=21% Similarity=0.347 Sum_probs=128.7
Q ss_pred CCcCcCcccccCCCCHHHHHHhhhcCCCcEEEecCCCCCccccCCCCHhHHHHHhCCccEEEEecCccccCCceeeeecH
Q 019532 152 RSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPF 231 (339)
Q Consensus 152 ~~~~~~~I~R~~~~S~e~F~~~y~~~~~PvVI~g~~~~WPA~~kWs~~dYL~~~~G~r~VpVe~g~~y~~~~w~q~~mt~ 231 (339)
..+...++.|..++|.++|.++|-.+.+||||+|+.++|||.+||+ .++|.+++|+..+. +|..-. + ....|+|
T Consensus 49 ~~~dn~~r~~~~~isveeF~~~ferp~kPVll~g~~DgW~A~ekWT-~drLskkyrnq~Fk--cged~~--g-nsv~MKm 122 (407)
T KOG2130|consen 49 FFFDNGNRERRRNISVEEFIERFERPYKPVLLSGLTDGWPASEKWT-LDRLSKKYRNQKFK--CGEDNN--G-NSVKMKM 122 (407)
T ss_pred cccccchhhhhcCCCHHHHHHHhcccCCceEeeccccCCchhhhhh-HHHHHHHhcCcccc--ccccCC--C-cceeeeH
Confidence 3445567788899999999999999999999999999999999999 99999999985554 443211 1 2478999
Q ss_pred HHHHHHHHhCCCCCCccchhccchhhhhhH--HhhhccCCCCccccC-----CCCCccceEE--EcCCCCCCccccCCC-
Q 019532 232 SQFLERIQSNGSSASVPTYLAQHQLFDQIN--ELRNDICIPDYCFVG-----GGELRSLNAW--FGPAGTVTPLHHDPH- 301 (339)
Q Consensus 232 ~eFl~~~~~~~~~~~~~~YLaq~~L~~qiP--~L~~Di~iPdy~~~~-----~~~~~~~n~W--iGp~gT~TPLH~Dp~- 301 (339)
+.|++.+.++. ++.++|+.+..+.+..| .|.+|+.+|.||-.+ +.+.....-| |||+++.|..|.||-
T Consensus 123 kyY~~Ym~~~R--ddsPLYiFDssFgE~~~~rkLl~dY~VPk~F~dDlF~y~g~e~RPpyRWfvmGParSGtsiHIDPlg 200 (407)
T KOG2130|consen 123 KYYIEYMKSTR--DDSPLYIFDSSFGEHAPRRKLLEDYSVPKYFRDDLFQYLGEERRPPYRWFVMGPARSGTSIHIDPLG 200 (407)
T ss_pred HHHHHHHhccc--cCCCeEEecchhhcccchhhhhhhcCcchhhhHHHHHhcCcccCCCceeEEecCCCCCceeEECCcc
Confidence 99999999887 78899999999989999 999999999986421 1122334445 799999999999997
Q ss_pred -CCeeEEEEEEEeeecCCC
Q 019532 302 -HNILAQVSLYCALSQRTS 319 (339)
Q Consensus 302 -~Nll~QV~G~Kr~~~~~~ 319 (339)
....+.|.|+||.-++.+
T Consensus 201 TSAWNtll~GhKrW~LfPp 219 (407)
T KOG2130|consen 201 TSAWNTLLQGHKRWVLFPP 219 (407)
T ss_pred hHHHHHHhhccceeEEcCC
Confidence 345677899999555554
No 5
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=98.91 E-value=9.8e-10 Score=106.11 Aligned_cols=163 Identities=17% Similarity=0.209 Sum_probs=101.9
Q ss_pred CcccccCC--CCHHHHHHhhhcCCCcEEEecCCCCCccc----cCCCC-----------HhHHHHHhCCccEEEEecCcc
Q 019532 157 KLVVKRSA--LSLEGFLSEYFLSGSPVIITDCMAHWPAR----TNWND-----------LDYLKRVAGDRTVPVEVGKNY 219 (339)
Q Consensus 157 ~~I~R~~~--~S~e~F~~~y~~~~~PvVI~g~~~~WPA~----~kWs~-----------~dYL~~~~G~r~VpVe~g~~y 219 (339)
..|+|... .+.+.|.+.+..++.||+|.++..+|+|. ..|.+ ..|.+.+.-+-.++|..-..-
T Consensus 28 ~~v~r~~g~~~d~~~~a~~~~~k~~~v~is~v~~d~~~~~~~~~s~~dl~~~~~l~n~~~~f~k~~v~~~~~~v~~~~~s 107 (427)
T KOG2131|consen 28 PCVLRLIGPTADYGDFAERDTHKRPGVLISYVLEDWPCVSRDNESGADLNNNPDLKNFARSFAKRIVQNGDKNVFLCDLS 107 (427)
T ss_pred hhhhhhcccccCcccchhhhcccCCCccccccccCcccccCCCcchhhhccCcchhHHHHHHhHHHHhcCCccccccccc
Confidence 45777765 67789999999999999999999999999 55653 123333332223333321111
Q ss_pred ccCCceeeeecHHHHHHHHHhCCC----------------------CCCccchhccchhhhhhHHhhhccCCCCccccC-
Q 019532 220 LCQDWKQELIPFSQFLERIQSNGS----------------------SASVPTYLAQHQLFDQINELRNDICIPDYCFVG- 276 (339)
Q Consensus 220 ~~~~w~q~~mt~~eFl~~~~~~~~----------------------~~~~~~YLaq~~L~~qiP~L~~Di~iPdy~~~~- 276 (339)
.-.+....++++++|+..+..... .....+|+.++.|+.++|. -.-+..|++|...
T Consensus 108 ~f~~~~~Le~ny~d~~v~~a~~~e~e~~~l~lad~~~~e~~~~~~~~q~p~ly~kDwHL~~~~d~-~~~~~~pd~F~~dw 186 (427)
T KOG2131|consen 108 LFPDYEYLERNYGDFVVPVANCNEKERYSLKLADWEFREEQVQLACPQAPSLYGKDWHLYRFLDN-DFPYWTPDLFAKDW 186 (427)
T ss_pred cCccHHHHHhhhhhcchhhccccchhhhhhhhccchhHHHhHhhhcCCCccccccchheeeecCc-ccccccchhhhhcc
Confidence 112233456677777766644321 1334577777766666551 1122356655321
Q ss_pred -------CCCCccceEEEcCCCCCCccccCCCC--CeeEEEEEEEeeecCCCc
Q 019532 277 -------GGELRSLNAWFGPAGTVTPLHHDPHH--NILAQVSLYCALSQRTST 320 (339)
Q Consensus 277 -------~~~~~~~n~WiGp~gT~TPLH~Dp~~--Nll~QV~G~Kr~~~~~~~ 320 (339)
.+..+-.++.+||+||.||+|.|.++ .+-+.|+|+|+.-.++|+
T Consensus 187 lne~~i~~~~ddyrFvy~Gp~gSwtp~HaDVf~s~swS~nicG~KrWl~~pP~ 239 (427)
T KOG2131|consen 187 LNEFVIDGESDDYRFVYAGPAGSWTPFHADVFHSPSWSVNICGRKRWLLYPPE 239 (427)
T ss_pred cchhhccCCCCceeEEEeccCCCCCccchhhhcCCcceeeeecceeEEEeChH
Confidence 12233558999999999999999995 568999999995555443
No 6
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=8e-05 Score=72.86 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=84.3
Q ss_pred cCCCCHHHHHHhhhcCCCcEEEecCCCCCccccCCCCHhHHHHHhCCccEEEEecCccccCCceeeeecHHHHHHHHHhC
Q 019532 162 RSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSN 241 (339)
Q Consensus 162 ~~~~S~e~F~~~y~~~~~PvVI~g~~~~WPA~~kWs~~dYL~~~~G~r~VpVe~g~~y~~~~w~q~~mt~~eFl~~~~~~ 241 (339)
...+|+++|+++|. ..||+||+|+..+ -..+-+ ++=|.+.+-...|.-..=....+..|.-..-+|.+|=.. ..
T Consensus 12 ~~glt~~~FL~~YW-qkKPlliR~a~p~--~~~p~~-pdeLa~La~~edV~srLV~~~~~~~w~~~~gPfe~~d~~-~~- 85 (383)
T COG2850 12 PLGLTPEDFLRDYW-QKKPLLIRNAFPE--FHSPLS-PDELAGLAQEEDVTSRLVSHESDGTWQVSHGPFEEEDFL-GL- 85 (383)
T ss_pred cCCCCHHHHHHHHh-hhcchHHhhcccc--cccCCC-HHHHHHHhccccccchhhhhccCCceeEeeCccchhccc-cC-
Confidence 46789999999997 7899999998865 223333 344666654433432221122244565554455443211 00
Q ss_pred CCCCCccchhccc--hhhhhhHHhhhccC-CCCccccCCCCCccceEEEcCCCCCCccccCCCCCeeEEEEEEEeeecCC
Q 019532 242 GSSASVPTYLAQH--QLFDQINELRNDIC-IPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLYCALSQRT 318 (339)
Q Consensus 242 ~~~~~~~~YLaq~--~L~~qiP~L~~Di~-iPdy~~~~~~~~~~~n~WiGp~gT~TPLH~Dp~~Nll~QV~G~Kr~~~~~ 318 (339)
+....-+-|. ....++-.|.+-+. +|+. ..+++.+-+.+.|..-.-|+|.|++|+.|..|+||.....
T Consensus 86 ---p~~wsllvq~vd~w~p~v~~l~~~FrflP~w------r~ddiMIS~a~~GGgvg~H~D~YDVfliQg~G~RRW~v~~ 156 (383)
T COG2850 86 ---PRNWSLLVQAVDHWHPEVAALMEPFRFLPDW------RIDDIMISFAAPGGGVGPHFDQYDVFLIQGQGRRRWRVGK 156 (383)
T ss_pred ---CcCceEEEehhhhcCHHHHHHHHHhccCccc------cccceEEEEecCCCccCccccchheeEEeecccceeecCC
Confidence 0111112221 11223445556555 6763 2335666677777788999999999999999999966655
Q ss_pred C
Q 019532 319 S 319 (339)
Q Consensus 319 ~ 319 (339)
.
T Consensus 157 ~ 157 (383)
T COG2850 157 K 157 (383)
T ss_pred c
Confidence 4
No 7
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=97.07 E-value=0.00056 Score=49.42 Aligned_cols=28 Identities=39% Similarity=0.438 Sum_probs=25.7
Q ss_pred ceEEEcCCCCCCccccCCCC--CeeEEEEE
Q 019532 283 LNAWFGPAGTVTPLHHDPHH--NILAQVSL 310 (339)
Q Consensus 283 ~n~WiGp~gT~TPLH~Dp~~--Nll~QV~G 310 (339)
.++|+|+.++.|++|.|+++ |++.|+.|
T Consensus 28 ~~~~~G~~~s~t~~H~d~~~~~n~~~~~~~ 57 (57)
T smart00558 28 PYLYMGMAGSVTPWHIDDYDLVNYLHQGAG 57 (57)
T ss_pred ceEEEeCCCCccceeEcCCCeEEEEEecCC
Confidence 78999999999999999999 99888764
No 8
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=96.98 E-value=0.00062 Score=66.25 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=31.1
Q ss_pred cceEEEcCCC-CCCccccCCCCCeeEEEEEEEeeecCC
Q 019532 282 SLNAWFGPAG-TVTPLHHDPHHNILAQVSLYCALSQRT 318 (339)
Q Consensus 282 ~~n~WiGp~g-T~TPLH~Dp~~Nll~QV~G~Kr~~~~~ 318 (339)
..|++++|+| +..+.|+|.+++|++|+.|+|+...+.
T Consensus 115 ~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~ 152 (319)
T PF08007_consen 115 GANAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYP 152 (319)
T ss_dssp EEEEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-
T ss_pred ceEEEecCCCCCCccCEECCcccEEEECCceeEEEECC
Confidence 5799999998 577999999999999999999988777
No 9
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=79.71 E-value=2.5 Score=46.00 Aligned_cols=136 Identities=24% Similarity=0.310 Sum_probs=78.5
Q ss_pred CCHHHHHHhhhcCCCcEEEecCCCCCccccCCCCHhHHHHHhCCccEEEEecCccccCCceeeeec-HHHHHHHHHhCCC
Q 019532 165 LSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIP-FSQFLERIQSNGS 243 (339)
Q Consensus 165 ~S~e~F~~~y~~~~~PvVI~g~~~~WPA~~kWs~~dYL~~~~G~r~VpVe~g~~y~~~~w~q~~mt-~~eFl~~~~~~~~ 243 (339)
-....|++ .-..++|||++|+.+.-+.. .|. ++-|...+|+..+-+.-.++-.- -.-.-|. |-||+..+.....
T Consensus 528 ~n~~~FQE-hWkqGqPViVs~V~~~l~g~-lW~-P~a~~~~~g~q~~~l~n~~~~~i--~s~d~~~~fwegFe~~~kr~~ 602 (889)
T KOG1356|consen 528 NNLKHFQE-HWKQGQPVIVSGVHKKLNGL-LWK-PEALSRAFGDQVVDLSNCNNSQI--ISNDCVDNFWEGFEGYSKRLK 602 (889)
T ss_pred hHHHHHHH-HHhcCCcEEehHhhhhcccc-ccc-hHHHHHHhccchhhhhcCCCCCc--cccchhhhHHHhhcccccCcc
Confidence 34668886 55799999999999876653 798 88888888887665442221100 0112233 6666665543321
Q ss_pred C---CCccchhccc----h----hhhhhHHhhhccCCCCccccCCCCC------------c--cceEE--------EcCC
Q 019532 244 S---ASVPTYLAQH----Q----LFDQINELRNDICIPDYCFVGGGEL------------R--SLNAW--------FGPA 290 (339)
Q Consensus 244 ~---~~~~~YLaq~----~----L~~qiP~L~~Di~iPdy~~~~~~~~------------~--~~n~W--------iGp~ 290 (339)
. ....+=|.+| . +..++.+|..-+++|.|+... |.+ + -+.+| .|-.
T Consensus 603 ~~~g~p~vLKLKDWpp~~~Fkd~lP~r~eell~sLPlpEYt~r~-G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~ 681 (889)
T KOG1356|consen 603 SENGWPEVLKLKDWPPGEDFKDMLPRRFEELLASLPLPEYTDRD-GKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRG 681 (889)
T ss_pred cccCCeeEEeecCCCchHhHhhhhhHHHHHHHHcCCchhhhcCC-CccchHhhCcccccCCCCCchhhhhccccccccCC
Confidence 1 1223445565 1 223344677777899998632 211 0 11233 2434
Q ss_pred CCCCccccCCCC--CeeE
Q 019532 291 GTVTPLHHDPHH--NILA 306 (339)
Q Consensus 291 gT~TPLH~Dp~~--Nll~ 306 (339)
..+|-||.|.-+ |+++
T Consensus 682 ~gtTnLH~dvSDaVNILv 699 (889)
T KOG1356|consen 682 DGTTNLHLDVSDAVNILV 699 (889)
T ss_pred CCceeeceehhhhhhhee
Confidence 678899999874 6654
No 10
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.65 E-value=1.7 Score=44.62 Aligned_cols=40 Identities=23% Similarity=0.159 Sum_probs=35.6
Q ss_pred ccceEEEcCCCC-CCccccCCCCCeeEEEEEEEeeecCCCc
Q 019532 281 RSLNAWFGPAGT-VTPLHHDPHHNILAQVSLYCALSQRTST 320 (339)
Q Consensus 281 ~~~n~WiGp~gT-~TPLH~Dp~~Nll~QV~G~Kr~~~~~~~ 320 (339)
.-.|+++-|+|+ .-+.|||--+-|+.||.|+|....|+|+
T Consensus 317 vGaNvYLTPagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~ 357 (629)
T KOG3706|consen 317 VGANVYLTPAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPT 357 (629)
T ss_pred cccceeecCCCCCCCCCchhhhhhhhheeccceeeEeecCC
Confidence 346999999988 5688999999999999999999999974
No 11
>PF12854 PPR_1: PPR repeat
Probab=37.20 E-value=51 Score=20.82 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhhccCccHHHHHHHhHh
Q 019532 67 DAYSMACLHGAKYHYRNGEFKEALRVLDM 95 (339)
Q Consensus 67 ~~Y~~~~l~~a~~~~~~~~~~~~i~~lD~ 95 (339)
.++|+.+|..+.+ +.+++.+|++++|.
T Consensus 6 d~~ty~~lI~~~C--k~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYC--KAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHH--HCCCHHHHHHHHHh
Confidence 4678888877665 58899999998873
No 12
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=35.06 E-value=16 Score=29.06 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=18.6
Q ss_pred EEEcCCCCCCccccCCCCC--eeEEEEE-EEe
Q 019532 285 AWFGPAGTVTPLHHDPHHN--ILAQVSL-YCA 313 (339)
Q Consensus 285 ~WiGp~gT~TPLH~Dp~~N--ll~QV~G-~Kr 313 (339)
+.||.++|.|++|.|...- +.-.+.| .|.
T Consensus 2 ~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~ 33 (114)
T PF02373_consen 2 LYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKV 33 (114)
T ss_dssp EEEE-TTEEEEEEE-GGG-EEEEEEEEESEEE
T ss_pred EEEeCCCcCCCcEecCCCCceeeeeccCcceE
Confidence 5799999999999998742 3334444 555
No 13
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=23.03 E-value=1.5e+02 Score=24.90 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=45.5
Q ss_pred CceEEecchHHHHHhHHHHHHHHHHHHhhhccccCCCCCcHHHHHHHHHHHHHHhhhccCccHHHHHHHhHhHhhccCCc
Q 019532 24 GGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPV 103 (339)
Q Consensus 24 ~g~~~~~~~~~~~~~~~~~~~~~~~a~ekL~~g~w~~V~~~wR~~Y~~~~l~~a~~~~~~~~~~~~i~~lD~~limgg~~ 103 (339)
+|+.|--.+...-++......++|+-.++|+.-. ..|. .+|+++||..+-.|.+.
T Consensus 18 pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~-~hVK------------------------~K~Lrilk~l~~~G~~~ 72 (122)
T cd03572 18 PGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSS-PHVK------------------------LKVLKIIKHLCEKGNSD 72 (122)
T ss_pred chHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCC-Ccch------------------------HHHHHHHHHHHhhCCHH
Confidence 5666655555555577788889999999997533 2332 35678888888888777
Q ss_pred ChhhHHHHHHHHHh
Q 019532 104 LRKDLDSAIETLSL 117 (339)
Q Consensus 104 ~~~~l~~~~~~~~~ 117 (339)
++.++..-...+.+
T Consensus 73 f~~~~~~~~~~Ik~ 86 (122)
T cd03572 73 FKRELQRNSAQIRE 86 (122)
T ss_pred HHHHHHHhHHHHHH
Confidence 77776655444433
Done!