BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019534
(339 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1
Length = 287
Score = 315 bits (808), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 174/323 (53%), Positives = 214/323 (66%), Gaps = 45/323 (13%)
Query: 1 MVSVNPNPAQGFFFFDPMNMGHPGPNSLPPTGSYNAATTTNDSTTASASTKSTGAINTMS 60
MV+VNP+ A PM M PG N+LP T TT S +S TMS
Sbjct: 1 MVTVNPSQAHCL----PMKMSLPGFNTLPHTA-----------TTIPVSIRSN---RTMS 42
Query: 61 FAEDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 120
F EDP+KK+RKPYTITKSRE+WTEQEHDKFLEAL LFDRDWKKI+AF+GSKTVIQIRSHA
Sbjct: 43 FFEDPTKKVRKPYTITKSRENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHA 102
Query: 121 QKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKTVHGVSQFGGQVQSSAALLEPGYIY 180
QKYFLKVQKNGT EH+PPPRPKRKA HPYPQKAPK + SS AL + Y+Y
Sbjct: 103 QKYFLKVQKNGTKEHLPPPRPKRKANHPYPQKAPKFT---------LSSSNALFQHDYLY 153
Query: 181 RPDSSSVLGNPVPVAALSSWSYDSVPPVNVSQVTKDDVGLPGSSNAQNFCYSSSNDSTLR 240
+S V+ + S+P S V K++ G+ ++N C +SS+ R
Sbjct: 154 NTNSHPVISTTRKHGLVHCDV--SIP----SSVIKEEFGV-----SENCCSTSSSRDKQR 202
Query: 241 TWPVGETIDRGDHGKPRR-------VYSFLGSVFDPNSTGHIQRLKQMDPINFETVLLLM 293
T V ET D+ GKP R VY+F+GSVFDP +TGH++RLK+MDPIN ETVLLLM
Sbjct: 203 TRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKTTGHVKRLKEMDPINLETVLLLM 262
Query: 294 RNLAINLTSPEFEDHKRLLSLYD 316
+NL++NLTSPEF++ ++L+S Y+
Sbjct: 263 KNLSVNLTSPEFDEQRKLISSYN 285
>sp|Q54IF9|MYBG_DICDI Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1
Length = 423
Score = 178 bits (451), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 110/260 (42%), Positives = 146/260 (56%), Gaps = 33/260 (12%)
Query: 66 SKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFL 125
S K RKPYTI+K RE+WT++EH KFLEAL LFDRDWKKIE+F+GSKTVIQIRSHAQKYF+
Sbjct: 28 SLKSRKPYTISKQRENWTDEEHQKFLEALTLFDRDWKKIESFVGSKTVIQIRSHAQKYFI 87
Query: 126 KVQKNGTSEHVPPPRPKRKAAHPYPQKAPKTVHGV---SQFGGQVQSSAALLEPGYIYR- 181
KVQKN T E +PPPRPKRK+ PYPQK G G S++ YR
Sbjct: 88 KVQKNNTGERIPPPRPKRKSIQPYPQKQKHDGMGAFIPDSLSGNHFISSSSFATWMTYRG 147
Query: 182 --PDSSSVLGNP----VPVAALSSWSYDSVPPVNVSQVTKDDVGLPGSSNAQNFCYSSSN 235
P+ S NP + L V +Q ++ + GLP + SS+N
Sbjct: 148 LMPNISESQINPSDLQKQLEQLQQAQQYIQQAVTTAQSSQRNGGLPPNP-------SSNN 200
Query: 236 DSTLRT--WPVGETIDRGDHGKPRRVYSFLGSVFDPNSTGHIQRLKQMDPINFETVLLLM 293
T T +P ++Y+FL ++F+ N T + L + I+ ET+ +LM
Sbjct: 201 GGTTLTPNFP--------------KIYAFLSNLFESNGTSFTEALSDLSMIDRETMQILM 246
Query: 294 RNLAINLTSPEFEDHKRLLS 313
NLAINL + ++ D+ + LS
Sbjct: 247 HNLAINLANQQYRDNHQTLS 266
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 61/82 (74%)
Query: 56 INTMSFAEDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQ 115
++T + E+ K RKPYTITK RE WTE EH++FLEAL+L+ R W++IE IG+KT +Q
Sbjct: 1 MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQ 60
Query: 116 IRSHAQKYFLKVQKNGTSEHVP 137
IRSHAQK+F K++K + +P
Sbjct: 61 IRSHAQKFFTKLEKEAEVKGIP 82
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 60/81 (74%)
Query: 56 INTMSFAEDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQ 115
+ T S ED K RKPYTITK RE WTE+EH++F+EAL+L+ R W+KIE + +KT +Q
Sbjct: 1 METNSSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQ 60
Query: 116 IRSHAQKYFLKVQKNGTSEHV 136
IRSHAQK+F KV+K ++ V
Sbjct: 61 IRSHAQKFFSKVEKEAEAKGV 81
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 44/54 (81%)
Query: 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 131
+R SWT++E F+EA +L+D+D KKI+ + +KT++Q+RSHAQK+ LK++KNG
Sbjct: 149 TRSSWTKEEERLFVEAYKLYDKDNKKIQEHVKTKTILQVRSHAQKFALKLEKNG 202
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 82 WTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKV-QKNG 131
W+ +EH+ FL+A++ + R +WK I I S+ +QI++HA+ YF K+ Q+NG
Sbjct: 232 WSNEEHELFLKAIEKYGRGNWKLISTLIKSRNTLQIKNHARIYFDKISQQNG 283
>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1
Length = 734
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 76 TKSRESWTEQEHDKFLEALQLFDRD-WKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129
T ++ WT++EH +FL +Q+ + WK+I F+G++T QI+SHAQKY+L+ ++
Sbjct: 373 TSLKQGWTKEEHIRFLNGIQIHGKGAWKEIAQFVGTRTPTQIQSHAQKYYLRQKQ 427
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 68 KIRKPYTITKSRES-WTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 124
K++KP + + ++ W E+E + F + L F R W KI IG++TV+Q++S+A++YF
Sbjct: 87 KVKKPLVKSSAAQTRWAEEEKELFEKGLAQFGRRWTKIAKLIGTRTVLQVKSYAKQYF 144
>sp|Q54HX6|MYBI_DICDI Myb-like protein I OS=Dictyostelium discoideum GN=mybI PE=3 SV=1
Length = 977
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 77 KSRESWTEQEHDKFLEALQLF-DRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129
K WT +EH +F+EAL + +D K I ++ ++ Q+R+HAQKYFL++ +
Sbjct: 170 KQSRYWTPEEHSRFIEALSKYGHKDVKSISQYVSTRNPTQVRTHAQKYFLRIDR 223
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 82 WTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHVP 137
WT +E + F + L F R W KI IGS+TV+Q++S+A++YF K G + P
Sbjct: 121 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP 176
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 82 WTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSE 134
WT +E + F + L + R W KI IGS+TV+Q++S+A++YF KN SE
Sbjct: 122 WTSEEKELFEQGLVKYGRRWTKIAKLIGSRTVLQVKSYARQYFKNKAKNDGSE 174
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 67 KKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 124
K++R P + S WT++E + F + L F R W I IGS++V+Q++++A+ YF
Sbjct: 97 KRVRSPAKASSSPVKWTKEEKNLFEQGLATFGRRWTSIARLIGSRSVLQVKNYARHYF 154
>sp|Q86HX9|MYBK_DICDI Myb-like protein K OS=Dictyostelium discoideum GN=mybK PE=3 SV=1
Length = 894
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 82 WTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129
WT +EH+KFLEA+Q F +D+ I F+ ++ Q+R+H Y LK QK
Sbjct: 657 WTSEEHNKFLEAVQQFGIKDYHAIAKFVQTRNHHQVRTHVNTY-LKNQK 704
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 82 WTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRP 141
WT +E + F + L F R W KI + S+TV+Q++S+A++YF KN V P
Sbjct: 118 WTVEEKELFEQGLAKFGRRWTKIATLLKSRTVLQVKSYARQYF----KNKVKWDVEKETP 173
Query: 142 KRKAA 146
+K++
Sbjct: 174 TQKSS 178
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA
PE=2 SV=1
Length = 307
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 82 WTEQEHDKFLEALQLFDR-DWKKI-EAFIGSKTVIQIRSHAQKYFLKVQKNG 131
WTE+EH FL L+ + + DW+ I F+ ++T Q+ SHAQKYF++ G
Sbjct: 134 WTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGG 185
>sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
Length = 297
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 82 WTEQEHDKFLEALQLFDR-DWKKI-EAFIGSKTVIQIRSHAQKYF 124
WTE+EH FL LQ + DW+ I F+ ++T Q+ SHAQKYF
Sbjct: 97 WTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 141
>sp|Q6KAQ7|ZZZ3_MOUSE ZZ-type zinc finger-containing protein 3 OS=Mus musculus GN=Zzz3
PE=2 SV=2
Length = 910
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 82 WTEQEHDKFLEAL------QLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 131
WT +E K + L ++ R W+KI +G++T Q+ S QKYF+K+ K G
Sbjct: 662 WTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAG 717
>sp|Q8IYH5|ZZZ3_HUMAN ZZ-type zinc finger-containing protein 3 OS=Homo sapiens GN=ZZZ3
PE=1 SV=1
Length = 903
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 82 WTEQEHDKFLEAL------QLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 131
WT +E K + L ++ R W+KI +G++T Q+ S QKYF+K+ K G
Sbjct: 655 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAG 710
>sp|P32591|SWI3_YEAST SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1
Length = 825
Score = 39.3 bits (90), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 29 PPTGSYNAATTTNDS-----TTASASTKSTGAINTMSFAEDPSKKIRKPYTITKSRESWT 83
PP+ + + ND+ S ST TG N + E S+ ++K + + E+W+
Sbjct: 470 PPSTTDDENGDKNDNGGKMNNEVSTSTSMTGDANLLEEGE-TSRPLKKVKILEQIDENWS 528
Query: 84 EQEHDKFLEALQLFDRDWKKIEAFIGSKT 112
+++ K L+ +Q F DW K+ +G+K+
Sbjct: 529 KEDLQKLLKGIQEFGADWYKVAKNVGNKS 557
>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica
PE=2 SV=1
Length = 341
Score = 38.9 bits (89), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 19 NMGHPG-PNSLPPTGSYNAATTTNDSTTASASTKSTGAINTMSFAEDPSKKIRKPYTITK 77
N+ PG P S+ ATT + +T AS + + M IR + K
Sbjct: 142 NLEKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRD---LGK 198
Query: 78 SRESWTEQEHDKFLEALQLFDRDW---KKIEAFIGSK--TVIQIRSHAQKYFLKVQKN-- 130
SR +WT Q H +F+ A+ D KKI + K T Q+ SH QKY ++++K+
Sbjct: 199 SRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKKSIP 258
Query: 131 GTSEH 135
TS+H
Sbjct: 259 TTSKH 263
>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp.
japonica GN=EHD1 PE=1 SV=1
Length = 341
Score = 38.9 bits (89), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 19 NMGHPG-PNSLPPTGSYNAATTTNDSTTASASTKSTGAINTMSFAEDPSKKIRKPYTITK 77
N+ PG P S+ ATT + +T AS + + M IR + K
Sbjct: 142 NLEKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRD---LGK 198
Query: 78 SRESWTEQEHDKFLEALQLFDRDW---KKIEAFIGSK--TVIQIRSHAQKYFLKVQKN-- 130
SR +WT Q H +F+ A+ D KKI + K T Q+ SH QKY ++++K+
Sbjct: 199 SRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKKSIP 258
Query: 131 GTSEH 135
TS+H
Sbjct: 259 TTSKH 263
>sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1
SV=1
Length = 807
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 80 ESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127
++WT+QE LEA++L++ +W +I +GSK+ Q H FL++
Sbjct: 401 DNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILH----FLRL 444
>sp|Q9UKL0|RCOR1_HUMAN REST corepressor 1 OS=Homo sapiens GN=RCOR1 PE=1 SV=1
Length = 482
Score = 38.1 bits (87), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 70 RKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 118
R P I K WT +E ++A++ + RD++ I IG+K+V+Q+++
Sbjct: 371 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 419
>sp|Q8CFE3|RCOR1_MOUSE REST corepressor 1 OS=Mus musculus GN=Rcor1 PE=1 SV=2
Length = 477
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 70 RKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 118
R P I K WT +E ++A++ + RD++ I IG+K+V+Q+++
Sbjct: 365 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 413
>sp|Q54YB7|MYBF_DICDI Myb-like protein F OS=Dictyostelium discoideum GN=mybF PE=3 SV=1
Length = 564
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHVPP 138
R WT +E + + E + ++WKKI+ K+ Q+ SH Q Y +K+ K + V
Sbjct: 414 RTVWTLEEEELYKEVFNHYGKNWKKIKTHFPDKSKSQVTSHGQ-YLIKINKLQDLQKVKS 472
Query: 139 P 139
P
Sbjct: 473 P 473
>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1
Length = 100
Score = 35.0 bits (79), Expect = 0.85, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 82 WTEQEHDKFLEALQLFDRD----WKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSE--H 135
WT +++ F +AL +D+D W+ + +G KT +++ H Y L VQ + E H
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRH---YELLVQDINSIENGH 70
Query: 136 VPPP 139
VP P
Sbjct: 71 VPFP 74
>sp|Q54K19|MYBD_DICDI Myb-like protein D OS=Dictyostelium discoideum GN=mybD PE=3 SV=1
Length = 595
Score = 35.0 bits (79), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 82 WTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSE--HVPPP 139
WT++E +K + + + WK I + KT Q++SH Q Y +++ G E H
Sbjct: 443 WTQEEDEKMAQLYNKYGKSWKAIHSHFDDKTREQVQSHGQ-YLIRI---GKLEDIHRDGR 498
Query: 140 RPKRKAAHPYPQKAPK 155
+ +RK ++ +
Sbjct: 499 KERRKGKQALQERQQQ 514
>sp|Q8IZ40|RCOR2_HUMAN REST corepressor 2 OS=Homo sapiens GN=RCOR2 PE=1 SV=2
Length = 523
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 69 IRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128
+R P TK WT E ++A++ + +D+ I IG+KT+ Q+++ +F+ +
Sbjct: 319 LRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKT----FFVSYR 374
Query: 129 KNGTSEHV 136
+ E V
Sbjct: 375 RRFNLEEV 382
>sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sapiens GN=NCOR2 PE=1 SV=2
Length = 2525
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 82 WTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIR 117
WTE+E + + L R+W I +GSKTV Q +
Sbjct: 615 WTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCK 650
>sp|Q8C796|RCOR2_MOUSE REST corepressor 2 OS=Mus musculus GN=Rcor2 PE=2 SV=1
Length = 523
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 69 IRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128
+R P TK WT E ++A++ + +D+ I IG+KT+ Q+++ +F+ +
Sbjct: 319 LRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKT----FFVSYR 374
Query: 129 KNGTSEHV 136
+ E V
Sbjct: 375 RRFNLEEV 382
>sp|Q5FWT8|RCOR2_RAT REST corepressor 2 OS=Rattus norvegicus GN=Rcor2 PE=2 SV=1
Length = 523
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 69 IRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128
+R P TK WT E ++A++ + +D+ I IG+KT+ Q+++ +F+ +
Sbjct: 319 LRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKT----FFVSYR 374
Query: 129 KNGTSEHV 136
+ E V
Sbjct: 375 RRFNLEEV 382
>sp|Q9WU42|NCOR2_MOUSE Nuclear receptor corepressor 2 OS=Mus musculus GN=Ncor2 PE=1 SV=3
Length = 2472
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 82 WTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIR 117
WTE+E + + L R+W I +GSKTV Q +
Sbjct: 611 WTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCK 646
>sp|Q6A332|ALY3_ARATH Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1
Length = 1132
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 82 WTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 118
W+++E ++F E + F ++WKK+ F+ S++ + +
Sbjct: 47 WSKEELERFYEGYRKFGKEWKKVAGFVHSRSAEMVEA 83
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 15/73 (20%)
Query: 67 KKIRKPYTITKSRESWTEQEHDKFLEALQL---FDRDWKKI------EAFIGSKTVIQIR 117
KK RKP R +WTE+ H KFLEA+++ ++ K+ E I T +
Sbjct: 211 KKPRKP------RMTWTEELHQKFLEAIEIIGGIEKANPKVLVECLQEMRIEGITRSNVA 264
Query: 118 SHAQKYFLKVQKN 130
SH QK+ + +++N
Sbjct: 265 SHLQKHRINLEEN 277
>sp|Q90WN5|RCOR1_XENLA REST corepressor 1 OS=Xenopus laevis GN=rcor1 PE=2 SV=1
Length = 431
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 27/37 (72%)
Query: 82 WTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 118
WT +E ++A++++ RD++ I IG+K+V+Q+++
Sbjct: 332 WTTEEQLLAVQAIRMYGRDFQAISDVIGNKSVVQVKN 368
>sp|Q8LJT8|TKI1_ARATH TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1
PE=1 SV=2
Length = 743
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 76 TKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129
T+ +WT QE + F AL+ ++++KI + + SK Q+R + + ++ K
Sbjct: 52 TRQWAAWTHQEEESFFTALRQVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNK 105
>sp|Q1EBC4|NOP16_COCIM Nucleolar protein 16 OS=Coccidioides immitis (strain RS) GN=NOP16
PE=3 SV=1
Length = 235
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 21 GHPGPNSLPPTGSYNAATTTNDST--TASASTKSTGAINTMSFAEDPSKKIRKPYTITKS 78
GH + P N + DST AST A+ + AE+ K RKP +K
Sbjct: 129 GHKRRRTNPLDDPLNELSDVEDSTLRDTGASTDVVSALERQAAAEEERVKKRKPRHQSKR 188
Query: 79 RESWTEQEHDKFLEALQLFDRDWK 102
E W ++ DK+ + + RD K
Sbjct: 189 EEEWLQRLVDKYGDDVPAMVRDRK 212
>sp|Q1WTJ0|HSLU_LACS1 ATP-dependent protease ATPase subunit HslU OS=Lactobacillus
salivarius (strain UCC118) GN=hslU PE=3 SV=1
Length = 467
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 65 PSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIE--AFIGSKTVIQIRSHAQK 122
P+KK+ + T+ ++RE ++E +K + + L D K+ E I + +I S +Q+
Sbjct: 232 PTKKVERTMTVAEAREILIKEESEKLVNSADLADAAIKRAENTGIIFIDEIDKIASKSQQ 291
Query: 123 YFLKVQKNGTSEHVPP 138
+V + G + P
Sbjct: 292 NAGQVSREGVQRDILP 307
>sp|O14470|SSR2_SCHPO SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3
Length = 503
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 82 WTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127
W+ QE LEA++ + DW +I +GS+T Q H FL++
Sbjct: 250 WSNQETLLLLEAIETYGDDWNQIALHVGSRTKEQCLIH----FLQI 291
>sp|Q10274|MU152_SCHPO Meiotically up-regulated gene 152 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug152 PE=1 SV=1
Length = 390
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
Query: 62 AEDPSKKI---------RKPYTITKSRESWTEQEHDKFLEALQLFD-RDWKKI 104
AE+PSK+ RKP + K R WTE+E + L Q+ +WKKI
Sbjct: 29 AENPSKREVAQDVPGFERKPTKVRKPRVKWTEKETNDLLRGCQIHGVGNWKKI 81
>sp|B2GUP8|ABCB8_XENTR ATP-binding cassette sub-family B member 8, mitochondrial
OS=Xenopus tropicalis GN=abcb8 PE=2 SV=1
Length = 688
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 138 PPRPKRKAAHPYPQKAP--KTVHGVSQFGGQVQSSAALLEPGYIYRPDSSSVLGNPVPVA 195
P RP + + + P KTV V Q GG + AALLE Y P +V + V +
Sbjct: 452 PTRPGHEVLRSFDLRIPHGKTVALVGQSGGGKSTVAALLE--RFYDPTEGAVQLDGVDIR 509
Query: 196 ALS-SWSYDSV------PPVNVSQVTKDDV--GLPGSSNAQ--NFCYSSSNDSTLRTWPV 244
L SW V PV +++ G P +++A+ ++ DS +R++P
Sbjct: 510 ILDPSWLRGEVIGFINQEPVLFGTTIIENIRFGRPDATDAEVHEAAIQANADSFIRSFPE 569
Query: 245 GETIDRGDHG 254
G G+ G
Sbjct: 570 GYNTMLGERG 579
>sp|Q6GQ66|FAKD1_XENLA FAST kinase domain-containing protein 1 OS=Xenopus laevis
GN=fastkd1 PE=2 SV=1
Length = 832
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 246 ETIDRGDHGKPRRVYSFLGS-------VFDPNSTGHIQRLKQMDPINFETVLLLMRNLAI 298
+T+D PRR+ FL + + + + +Q + QMDP N ++ L ++L
Sbjct: 207 DTLDVSHFNHPRRIVQFLRNMKHTYRPLLEKCNNAFLQNIGQMDPENLSIIIGLYQSLQY 266
Query: 299 NLTSPEFEDHKRLLSLYD 316
N + RL+ + D
Sbjct: 267 NNSEFRLMARNRLIEMVD 284
>sp|Q02457|TBF1_YEAST Protein TBF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TBF1 PE=1 SV=2
Length = 562
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 69 IRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIG----------SKTVIQIRS 118
+RKP K++ +W+++E + +E L+ W KI G ++T +Q++
Sbjct: 403 LRKP----KAKRTWSKEEEEALVEGLKEVGPSWSKILDLYGPGGKITENLKNRTQVQLKD 458
Query: 119 HAQKYFLKVQKNG 131
A+ + L+ K+G
Sbjct: 459 KARNWKLQYLKSG 471
>sp|Q55GK3|MYBM_DICDI Myb-like protein M OS=Dictyostelium discoideum GN=mybM PE=3 SV=1
Length = 669
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 75 ITKSRESWTEQEHDKFLEALQLF-DRDWKKIEAFI-GSKTVIQIRSHAQKYF 124
I +S WTE+E K + + ++ ++ WK+I A + G KT Q H ++
Sbjct: 63 IRRSPNKWTEEEDQKLFQLVSIYGEKKWKRISAEMGGQKTGAQCAQHWKRVL 114
>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis
thaliana GN=ARR21 PE=2 SV=3
Length = 613
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 77 KSRESWTEQEHDKFLEALQLFDRDW---KKIEAFIGSKTVIQ--IRSHAQKYFLKVQK 129
K + WT+ HD FL+A++ D KKI AF+ + + + SH QKY + +++
Sbjct: 222 KKKIQWTDSLHDLFLQAIRHIGLDKAVPKKILAFMSVPYLTRENVASHLQKYRIFLRR 279
>sp|P32898|CYM1_YEAST Mitochondrial presequence protease OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CYM1 PE=1 SV=2
Length = 989
Score = 31.6 bits (70), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 17/159 (10%)
Query: 46 ASASTKSTGAINTMSFAEDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIE 105
++A +S+GAIN + + I + +++ + E++ + DK E LQ + D +
Sbjct: 697 SAAHYRSSGAINETLNGIEQLQFINRLHSLLDNEETFQREVVDKLTE-LQKYIVDTNNMN 755
Query: 106 AFIGSKTVIQIRSHAQKYFLKVQKNGTSEHVP-----PPRPKRKAAHPYPQKAPKTVHGV 160
FI S + +Q ++ ++ Q + E +P P PK YP K H +
Sbjct: 756 FFITSDSDVQAKT------VESQISKFMERLPHGSCLPNGPK---TSDYPLIGSKCKHTL 806
Query: 161 SQFGGQVQ-SSAALLEPGYIYRPDSS-SVLGNPVPVAAL 197
+F QV +S ALL Y ++ S+ V+ N + L
Sbjct: 807 IKFPFQVHYTSQALLGVPYTHKDGSALQVMSNMLTFKHL 845
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,723,999
Number of Sequences: 539616
Number of extensions: 5786602
Number of successful extensions: 16133
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 16044
Number of HSP's gapped (non-prelim): 125
length of query: 339
length of database: 191,569,459
effective HSP length: 118
effective length of query: 221
effective length of database: 127,894,771
effective search space: 28264744391
effective search space used: 28264744391
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)