Query 019534
Match_columns 339
No_of_seqs 216 out of 744
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 03:17:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.7 1.1E-16 3.8E-21 122.2 8.7 56 77-132 7-62 (72)
2 2yus_A SWI/SNF-related matrix- 99.7 5.9E-17 2E-21 127.3 6.1 60 65-124 4-63 (79)
3 2yum_A ZZZ3 protein, zinc fing 99.6 3.2E-16 1.1E-20 119.9 7.5 56 77-132 6-67 (75)
4 2elk_A SPCC24B10.08C protein; 99.5 5.7E-15 1.9E-19 109.0 6.4 48 78-125 8-57 (58)
5 1x41_A Transcriptional adaptor 99.5 1.1E-14 3.7E-19 107.8 6.6 50 77-126 6-56 (60)
6 2iw5_B Protein corest, REST co 99.5 3.2E-14 1.1E-18 131.7 5.7 65 63-127 117-181 (235)
7 1guu_A C-MYB, MYB proto-oncoge 99.5 7.6E-14 2.6E-18 99.8 6.3 48 78-125 2-50 (52)
8 2d9a_A B-MYB, MYB-related prot 99.4 1.5E-13 5.1E-18 101.0 5.8 49 77-125 6-55 (60)
9 1gvd_A MYB proto-oncogene prot 99.4 1.4E-13 4.7E-18 98.6 5.2 47 78-124 2-49 (52)
10 2din_A Cell division cycle 5-l 99.4 5.5E-13 1.9E-17 99.9 8.5 55 77-132 7-61 (66)
11 2cqr_A RSGI RUH-043, DNAJ homo 99.4 8E-13 2.7E-17 102.8 7.9 48 77-124 16-67 (73)
12 1w0t_A Telomeric repeat bindin 99.4 7.8E-13 2.7E-17 95.3 6.5 47 79-125 2-51 (53)
13 2dim_A Cell division cycle 5-l 99.3 8.4E-13 2.9E-17 99.9 5.9 49 77-125 7-56 (70)
14 1ity_A TRF1; helix-turn-helix, 99.3 1.7E-12 5.7E-17 98.1 7.3 51 76-126 7-60 (69)
15 2ltp_A Nuclear receptor corepr 99.0 1E-13 3.5E-18 110.4 0.0 54 76-129 13-66 (89)
16 2xag_B REST corepressor 1; ami 99.3 1.4E-12 4.8E-17 131.1 5.9 65 63-127 364-428 (482)
17 3sjm_A Telomeric repeat-bindin 99.3 4E-12 1.4E-16 96.0 7.0 47 78-124 10-59 (64)
18 2cjj_A Radialis; plant develop 99.3 6.9E-12 2.4E-16 101.6 7.0 64 78-142 7-74 (93)
19 2eqr_A N-COR1, N-COR, nuclear 99.3 1.1E-11 3.8E-16 92.3 7.4 44 77-120 10-53 (61)
20 2k9n_A MYB24; R2R3 domain, DNA 99.2 2.1E-11 7.1E-16 98.6 8.0 54 77-130 51-104 (107)
21 2llk_A Cyclin-D-binding MYB-li 99.2 2.3E-11 7.8E-16 94.7 6.5 52 69-121 13-64 (73)
22 3zqc_A MYB3; transcription-DNA 99.2 2.3E-11 8E-16 101.5 5.6 53 77-129 52-104 (131)
23 3osg_A MYB21; transcription-DN 99.2 3.1E-11 1.1E-15 100.3 6.1 48 77-124 9-56 (126)
24 3osg_A MYB21; transcription-DN 99.2 3.6E-11 1.2E-15 99.9 6.4 51 77-127 60-110 (126)
25 1gv2_A C-MYB, MYB proto-oncoge 99.2 2.8E-11 9.7E-16 96.8 5.3 49 77-125 54-102 (105)
26 1gv2_A C-MYB, MYB proto-oncoge 99.1 5.5E-11 1.9E-15 95.2 5.2 47 78-124 3-50 (105)
27 2k9n_A MYB24; R2R3 domain, DNA 99.1 7.6E-11 2.6E-15 95.3 5.9 46 79-124 1-47 (107)
28 2cqq_A RSGI RUH-037, DNAJ homo 99.1 2.7E-10 9.1E-15 88.3 7.9 60 78-140 7-70 (72)
29 2yqk_A Arginine-glutamic acid 99.1 2.3E-10 7.9E-15 86.0 6.2 43 78-120 8-51 (63)
30 3zqc_A MYB3; transcription-DNA 99.0 9E-11 3.1E-15 98.0 4.1 47 79-125 2-49 (131)
31 1h8a_C AMV V-MYB, MYB transfor 99.0 1.9E-10 6.4E-15 95.3 5.9 48 77-124 25-73 (128)
32 1h8a_C AMV V-MYB, MYB transfor 99.0 1E-10 3.6E-15 96.9 4.1 47 78-124 78-124 (128)
33 1irz_A ARR10-B; helix-turn-hel 99.0 8E-10 2.8E-14 84.6 8.0 55 76-130 4-63 (64)
34 1wgx_A KIAA1903 protein; MYB D 99.0 4.8E-10 1.7E-14 87.7 6.0 45 79-123 8-56 (73)
35 2ckx_A NGTRF1, telomere bindin 99.0 7.8E-10 2.7E-14 87.8 6.8 48 80-127 1-53 (83)
36 2juh_A Telomere binding protei 98.9 2.7E-09 9.2E-14 90.4 7.5 55 73-127 11-70 (121)
37 2roh_A RTBP1, telomere binding 98.9 7.5E-09 2.6E-13 87.8 10.1 52 76-127 28-84 (122)
38 1h89_C C-MYB, MYB proto-oncoge 98.9 7E-10 2.4E-14 94.8 3.6 48 77-124 108-155 (159)
39 2crg_A Metastasis associated p 98.9 2.9E-09 9.9E-14 81.7 6.3 44 77-120 6-50 (70)
40 1h89_C C-MYB, MYB proto-oncoge 98.9 1.9E-09 6.5E-14 92.1 5.6 48 77-124 56-104 (159)
41 2aje_A Telomere repeat-binding 98.9 2.4E-09 8.2E-14 88.6 6.0 51 76-126 10-65 (105)
42 1x58_A Hypothetical protein 49 98.8 3.4E-09 1.2E-13 80.8 5.6 46 77-122 6-54 (62)
43 4a69_C Nuclear receptor corepr 98.7 1.1E-08 3.6E-13 82.6 5.7 43 78-120 42-84 (94)
44 1ign_A Protein (RAP1); RAP1,ye 98.6 1.2E-08 4.1E-13 95.3 4.0 50 77-126 6-61 (246)
45 4eef_G F-HB80.4, designed hema 98.6 2.4E-09 8.3E-14 84.2 -0.9 43 79-121 20-66 (74)
46 3hm5_A DNA methyltransferase 1 97.9 2.2E-05 7.7E-10 63.8 7.3 52 79-130 30-86 (93)
47 1fex_A TRF2-interacting telome 97.8 2.1E-05 7.3E-10 58.6 5.0 46 79-124 2-57 (59)
48 1ug2_A 2610100B20RIK gene prod 97.6 0.0007 2.4E-08 55.4 11.0 52 78-129 32-86 (95)
49 2xag_B REST corepressor 1; ami 97.1 6.7E-05 2.3E-09 75.9 0.0 42 79-120 189-230 (482)
50 1ofc_X ISWI protein; nuclear p 97.0 0.00074 2.5E-08 64.7 5.8 48 80-127 111-159 (304)
51 4iej_A DNA methyltransferase 1 96.9 0.0022 7.6E-08 52.3 7.3 52 79-130 30-86 (93)
52 2ebi_A DNA binding protein GT- 96.8 0.0025 8.6E-08 49.4 6.0 51 77-127 2-66 (86)
53 2lr8_A CAsp8-associated protei 95.6 0.00035 1.2E-08 54.4 0.0 45 80-125 15-62 (70)
54 1ofc_X ISWI protein; nuclear p 96.0 0.015 5.1E-07 55.8 7.7 53 78-130 211-279 (304)
55 4b4c_A Chromodomain-helicase-D 95.3 0.03 1E-06 49.1 6.6 52 78-129 6-62 (211)
56 4b4c_A Chromodomain-helicase-D 95.2 0.046 1.6E-06 47.8 7.3 49 78-127 133-196 (211)
57 2y9y_A Imitation switch protei 93.7 0.069 2.4E-06 52.6 5.4 47 80-126 124-172 (374)
58 1ign_A Protein (RAP1); RAP1,ye 93.7 0.11 3.8E-06 48.7 6.5 27 100-126 173-199 (246)
59 1ig6_A MRF-2, modulator recogn 91.2 0.25 8.5E-06 39.7 4.7 55 89-143 37-107 (107)
60 2xb0_X Chromo domain-containin 88.7 0.35 1.2E-05 45.6 4.2 27 79-105 168-195 (270)
61 2y9y_A Imitation switch protei 85.8 2.3 7.7E-05 42.0 8.2 54 78-131 227-296 (374)
62 2hzd_A Transcriptional enhance 84.8 1 3.5E-05 35.9 4.3 48 77-124 4-72 (82)
63 2xb0_X Chromo domain-containin 81.5 3 0.0001 39.3 6.8 46 78-123 2-52 (270)
64 2cxy_A BAF250B subunit, HBAF25 75.0 3.3 0.00011 34.1 4.5 30 100-129 74-107 (125)
65 2li6_A SWI/SNF chromatin-remod 69.4 4.6 0.00016 32.9 4.1 29 100-128 72-100 (116)
66 2lm1_A Lysine-specific demethy 65.6 13 0.00045 29.4 6.0 30 100-129 67-100 (107)
67 1kkx_A Transcription regulator 65.2 9.5 0.00033 31.6 5.2 40 90-129 53-100 (123)
68 2jrz_A Histone demethylase jar 62.3 10 0.00036 30.8 4.9 41 89-129 44-96 (117)
69 2eqy_A RBP2 like, jumonji, at 59.9 15 0.00051 30.1 5.5 40 90-129 47-98 (122)
70 2jxj_A Histone demethylase jar 56.9 8.5 0.00029 29.9 3.3 30 99-128 58-91 (96)
71 3e7l_A Transcriptional regulat 54.8 21 0.00073 25.4 5.0 27 84-110 18-44 (63)
72 2o8x_A Probable RNA polymerase 50.7 42 0.0014 23.0 5.9 48 80-129 14-61 (70)
73 1c20_A DEAD ringer protein; DN 49.0 28 0.00096 28.6 5.4 40 90-129 57-109 (128)
74 1fse_A GERE; helix-turn-helix 48.6 57 0.002 22.5 6.4 48 78-128 8-55 (74)
75 2jt1_A PEFI protein; solution 48.5 34 0.0012 26.0 5.5 47 87-138 6-59 (77)
76 2kk0_A AT-rich interactive dom 45.2 23 0.00079 29.9 4.4 30 100-129 87-121 (145)
77 2rq5_A Protein jumonji; develo 43.8 21 0.00071 29.7 3.8 31 99-129 64-99 (121)
78 3c57_A Two component transcrip 42.9 82 0.0028 23.8 6.9 48 80-130 26-73 (95)
79 1ntc_A Protein (nitrogen regul 42.6 37 0.0013 25.9 4.9 28 83-110 49-76 (91)
80 3i4p_A Transcriptional regulat 41.7 26 0.00088 29.0 4.2 43 85-132 3-46 (162)
81 1x3u_A Transcriptional regulat 39.1 52 0.0018 23.2 5.0 45 81-128 16-60 (79)
82 1g2h_A Transcriptional regulat 36.3 68 0.0023 22.7 5.2 31 81-112 17-48 (61)
83 1je8_A Nitrate/nitrite respons 35.5 78 0.0027 23.3 5.6 47 79-128 19-65 (82)
84 1umq_A Photosynthetic apparatu 34.6 44 0.0015 25.8 4.2 29 82-110 38-66 (81)
85 3mzy_A RNA polymerase sigma-H 34.6 92 0.0031 24.0 6.1 32 96-128 122-153 (164)
86 3ulq_B Transcriptional regulat 34.1 85 0.0029 23.8 5.7 47 78-127 26-72 (90)
87 3hug_A RNA polymerase sigma fa 33.6 1E+02 0.0036 22.7 6.1 33 96-129 51-83 (92)
88 1ku3_A Sigma factor SIGA; heli 32.7 1.2E+02 0.0041 21.4 6.1 47 81-128 10-59 (73)
89 2dbb_A Putative HTH-type trans 27.9 1.3E+02 0.0045 24.0 6.1 43 85-132 9-52 (151)
90 2e1c_A Putative HTH-type trans 27.6 1E+02 0.0034 25.9 5.6 44 84-132 26-70 (171)
91 2juh_A Telomere binding protei 27.1 37 0.0013 28.4 2.8 25 79-103 79-103 (121)
92 2lc3_A E3 ubiquitin-protein li 26.4 81 0.0028 25.4 4.4 56 77-132 11-85 (88)
93 1eto_A FIS, factor for inversi 26.2 97 0.0033 24.4 4.9 27 84-110 57-83 (98)
94 3fdq_A Motility gene repressor 26.2 1.7E+02 0.0058 25.7 6.8 63 78-144 68-143 (170)
95 1p4w_A RCSB; solution structur 25.5 1.6E+02 0.0056 22.8 6.1 46 79-127 32-77 (99)
96 2cyy_A Putative HTH-type trans 24.9 1.6E+02 0.0054 23.6 6.1 43 85-132 7-50 (151)
97 2p7v_B Sigma-70, RNA polymeras 23.4 1.1E+02 0.0039 21.2 4.4 45 83-128 7-54 (68)
98 1or7_A Sigma-24, RNA polymeras 22.9 1.8E+02 0.0061 23.3 6.1 31 98-129 156-186 (194)
99 2rnj_A Response regulator prot 22.6 1.2E+02 0.004 22.5 4.6 46 80-128 28-73 (91)
100 1qbj_A Protein (double-strande 21.6 1.7E+02 0.0058 22.2 5.4 48 84-136 9-60 (81)
101 1qgp_A Protein (double strande 21.3 1.2E+02 0.0042 22.5 4.4 48 83-135 12-63 (77)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.68 E-value=1.1e-16 Score=122.16 Aligned_cols=56 Identities=39% Similarity=0.676 Sum_probs=52.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 019534 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl~K~g~ 132 (339)
.+++.||.|||++|++++++||.+|..||++|++||..|||+||++||.+..+.|.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g~ 62 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGL 62 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCT
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 46789999999999999999999999999999999999999999999999876653
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.67 E-value=5.9e-17 Score=127.29 Aligned_cols=60 Identities=28% Similarity=0.401 Sum_probs=55.9
Q ss_pred CCCCCCCCcccccCCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHH
Q 019534 65 PSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 124 (339)
Q Consensus 65 ~~~KvrkPytitk~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf 124 (339)
+.+|.++++.....+..||.|||++||++|++||++|.+||++|++||..|||.||++|+
T Consensus 4 g~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 4 GSSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp SSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSC
T ss_pred cccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 457888999988999999999999999999999999999999999999999999998763
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=119.93 Aligned_cols=56 Identities=36% Similarity=0.668 Sum_probs=52.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC------hhHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 019534 77 KSRESWTEQEHDKFLEALQLFD------RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyG------rdWkkIA~~VgTRT~~QIRSHaQKYf~kl~K~g~ 132 (339)
..++.||.|||++|+++|++|| .+|.+||++|++||..|||.||++||.++.+.|.
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 3678999999999999999999 7999999999999999999999999999877664
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.55 E-value=5.7e-15 Score=109.00 Aligned_cols=48 Identities=23% Similarity=0.538 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-hhHHHHHHHhC-CCCHHHHHHHHHHHHH
Q 019534 78 SRESWTEQEHDKFLEALQLFD-RDWKKIEAFIG-SKTVIQIRSHAQKYFL 125 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyG-rdWkkIA~~Vg-TRT~~QIRSHaQKYf~ 125 (339)
.++.||.|||++|+++|++|| ++|++||++|+ +||..|||.||++||.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 467899999999999999999 79999999999 9999999999999975
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=1.1e-14 Score=107.81 Aligned_cols=50 Identities=30% Similarity=0.465 Sum_probs=46.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC-hhHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 019534 77 KSRESWTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFLK 126 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyG-rdWkkIA~~VgTRT~~QIRSHaQKYf~k 126 (339)
..+..||.|||++|++++++|| .+|.+||++|++||..|||.||++||..
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3578999999999999999999 6999999999999999999999998753
No 6
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.46 E-value=3.2e-14 Score=131.74 Aligned_cols=65 Identities=26% Similarity=0.485 Sum_probs=60.6
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 019534 63 EDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (339)
Q Consensus 63 e~~~~KvrkPytitk~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl 127 (339)
++...++|+|+.+.+....||+||+++|++||.+||++|..||++|++||..|||+||++|++++
T Consensus 117 ~~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 117 DGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp TTTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred HhhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 45677899999999999999999999999999999999999999999999999999999887663
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.46 E-value=7.6e-14 Score=99.78 Aligned_cols=48 Identities=25% Similarity=0.491 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCh-hHHHHHHHhCCCCHHHHHHHHHHHHH
Q 019534 78 SRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFL 125 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyGr-dWkkIA~~VgTRT~~QIRSHaQKYf~ 125 (339)
+++.||.|||++|++++++||. +|..||++|++||..|||.||++|+.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999997 99999999999999999999998863
No 8
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=1.5e-13 Score=101.04 Aligned_cols=49 Identities=18% Similarity=0.401 Sum_probs=45.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC-hhHHHHHHHhCCCCHHHHHHHHHHHHH
Q 019534 77 KSRESWTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 125 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyG-rdWkkIA~~VgTRT~~QIRSHaQKYf~ 125 (339)
..++.||.|||++|++++++|| ++|..||++|++||..|||.||++|+.
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999 599999999999999999999988753
No 9
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.42 E-value=1.4e-13 Score=98.63 Aligned_cols=47 Identities=17% Similarity=0.420 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCh-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 019534 78 SRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyGr-dWkkIA~~VgTRT~~QIRSHaQKYf 124 (339)
.++.||.|||++|++++++||. +|..||++|++||..|||.||++|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999996 8999999999999999999998875
No 10
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=5.5e-13 Score=99.85 Aligned_cols=55 Identities=24% Similarity=0.512 Sum_probs=49.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 019534 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl~K~g~ 132 (339)
..++.||.|||++|++++++||.+|.+||+++| ||..|||.||+.|+.+..+.+.
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~g-Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHhcccC-cCHHHHHHHHHHHhChHhcCCC
Confidence 467899999999999999999999999999555 9999999999999998877543
No 11
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.39 E-value=8e-13 Score=102.81 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=44.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC----hhHHHHHHHhCCCCHHHHHHHHHHHH
Q 019534 77 KSRESWTEQEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYF 124 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyG----rdWkkIA~~VgTRT~~QIRSHaQKYf 124 (339)
..++.||.||+++|+++|++|| .+|.+||++|++||..||+.||+.+.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3778999999999999999999 69999999999999999999998763
No 12
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.37 E-value=7.8e-13 Score=95.33 Aligned_cols=47 Identities=15% Similarity=0.377 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHcC-hhHHHHHHHhC--CCCHHHHHHHHHHHHH
Q 019534 79 RESWTEQEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYFL 125 (339)
Q Consensus 79 r~~WT~EEh~lFLEaLqkyG-rdWkkIA~~Vg--TRT~~QIRSHaQKYf~ 125 (339)
++.||.|||++|++++++|| ++|..||++++ +||..||+.||.+|..
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 68999999999999999999 69999999999 9999999999988753
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=8.4e-13 Score=99.86 Aligned_cols=49 Identities=14% Similarity=0.376 Sum_probs=45.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC-hhHHHHHHHhCCCCHHHHHHHHHHHHH
Q 019534 77 KSRESWTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 125 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyG-rdWkkIA~~VgTRT~~QIRSHaQKYf~ 125 (339)
.+++.||.|||++|++++++|| .+|..||.+|++||..|||.||++|+.
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999 799999999999999999999988754
No 14
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.35 E-value=1.7e-12 Score=98.15 Aligned_cols=51 Identities=14% Similarity=0.356 Sum_probs=47.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC-hhHHHHHHHhC--CCCHHHHHHHHHHHHHH
Q 019534 76 TKSRESWTEQEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYFLK 126 (339)
Q Consensus 76 tk~r~~WT~EEh~lFLEaLqkyG-rdWkkIA~~Vg--TRT~~QIRSHaQKYf~k 126 (339)
.+.++.||.||+++|++++++|| ++|..||++++ +||..|||.||++|+..
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999 69999999999 99999999999988665
No 15
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.02 E-value=1e-13 Score=110.39 Aligned_cols=54 Identities=28% Similarity=0.403 Sum_probs=49.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 019534 76 TKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (339)
Q Consensus 76 tk~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl~K 129 (339)
...++.||.|||++|++++++||.+|..||.+|++||..||++||+.|+.++..
T Consensus 13 ~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 13 NLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 346789999999999999999999999999999999999999999999887644
No 16
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.30 E-value=1.4e-12 Score=131.13 Aligned_cols=65 Identities=26% Similarity=0.485 Sum_probs=59.0
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 019534 63 EDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (339)
Q Consensus 63 e~~~~KvrkPytitk~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl 127 (339)
+......|.|+.+++...+||+||+++|++||.+||++|..||++|||||..|||+||++|+.++
T Consensus 364 ~~g~~~~r~~e~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 364 DGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp TTTTGGGCCCCCCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred hcccccccCCccccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 45556778899889999999999999999999999999999999999999999999999887654
No 17
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.30 E-value=4e-12 Score=95.99 Aligned_cols=47 Identities=17% Similarity=0.380 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-hhHHHHHHHhC--CCCHHHHHHHHHHHH
Q 019534 78 SRESWTEQEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYF 124 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyG-rdWkkIA~~Vg--TRT~~QIRSHaQKYf 124 (339)
.+..||+|||++|++++++|| ++|..||++++ +||..|||.||..+.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999 59999999876 899999999998764
No 18
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.26 E-value=6.9e-12 Score=101.59 Aligned_cols=64 Identities=22% Similarity=0.466 Sum_probs=50.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----hhHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 019534 78 SRESWTEQEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPK 142 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyG----rdWkkIA~~VgTRT~~QIRSHaQKYf~kl~K~g~~e~iPppr~K 142 (339)
..+.||.||+++|+++|.+|| .+|.+||++|++||..||+.||++++..+... ..+.+|.|...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~i-esg~vp~P~y~ 74 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYI-ESGKVPFPNYR 74 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH-HHSSCCC----
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-hcCCCCCCCCC
Confidence 357899999999999999997 58999999999999999999999998776433 22357766443
No 19
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.1e-11 Score=92.31 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=41.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHH
Q 019534 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 120 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHa 120 (339)
+....||+||+++|++++.+||++|..||++|++||..||+.||
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYY 53 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH
Confidence 45689999999999999999999999999999999999999875
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.23 E-value=2.1e-11 Score=98.65 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=49.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 019534 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 130 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl~K~ 130 (339)
..++.||.|||++|++++++||.+|..||++|++||..||+.||..+..++.+.
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred ccccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 357899999999999999999999999999999999999999999888876553
No 21
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.20 E-value=2.3e-11 Score=94.68 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=43.5
Q ss_pred CCCCcccccCCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHH
Q 019534 69 IRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQ 121 (339)
Q Consensus 69 vrkPytitk~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQ 121 (339)
....+....+++.||+|||++|++++++||.+|..||+++ +||..|||.||+
T Consensus 13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp ------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred eeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence 3344445568899999999999999999999999999999 999999999985
No 22
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.17 E-value=2.3e-11 Score=101.52 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=48.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 019534 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl~K 129 (339)
..++.||.|||++|++++.+||.+|..||++|++||..||++||+.++.+..+
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGGCC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 35789999999999999999999999999999999999999999988877544
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.16 E-value=3.1e-11 Score=100.34 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=45.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHH
Q 019534 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 124 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf 124 (339)
..++.||.|||++|++++++||.+|..||++|++||..||+.||++|+
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 467899999999999999999999999999999999999999998875
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.16 E-value=3.6e-11 Score=99.93 Aligned_cols=51 Identities=25% Similarity=0.464 Sum_probs=46.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 019534 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl 127 (339)
.+++.||.|||++|++++++||.+|..||++|++||..||++||..+..++
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999999999999999997776553
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.15 E-value=2.8e-11 Score=96.84 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=45.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHH
Q 019534 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFL 125 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~ 125 (339)
..++.||.|||++|++++++||.+|..||++|++||..||++||..++.
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999999999977644
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.11 E-value=5.5e-11 Score=95.16 Aligned_cols=47 Identities=17% Similarity=0.407 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCh-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 019534 78 SRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyGr-dWkkIA~~VgTRT~~QIRSHaQKYf 124 (339)
.++.||.|||++|++++++||. +|..||++|++||..||+.||++|+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 4689999999999999999996 8999999999999999999998874
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.10 E-value=7.6e-11 Score=95.32 Aligned_cols=46 Identities=22% Similarity=0.417 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCh-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 019534 79 RESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (339)
Q Consensus 79 r~~WT~EEh~lFLEaLqkyGr-dWkkIA~~VgTRT~~QIRSHaQKYf 124 (339)
++.||.|||++|++++++||. +|..||++|++||..||+.||.+|+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 368999999999999999995 9999999999999999999998774
No 28
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.08 E-value=2.7e-10 Score=88.29 Aligned_cols=60 Identities=20% Similarity=0.413 Sum_probs=47.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----hhHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 019534 78 SRESWTEQEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPR 140 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyG----rdWkkIA~~VgTRT~~QIRSHaQKYf~kl~K~g~~e~iPppr 140 (339)
....||.||+++|.++|.+|+ .+|.+||+++ .||..||+.||+++...+ ......+|.|+
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~--~~~~G~vp~P~ 70 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV--TCSPGMVSGPS 70 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC--CCCSCCCSCSC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc--CccCCCCCCCC
Confidence 457899999999999999998 4899999999 599999999998774442 12345566553
No 29
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=2.3e-10 Score=86.00 Aligned_cols=43 Identities=19% Similarity=0.477 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcChhHHHHHH-HhCCCCHHHHHHHH
Q 019534 78 SRESWTEQEHDKFLEALQLFDRDWKKIEA-FIGSKTVIQIRSHA 120 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyGrdWkkIA~-~VgTRT~~QIRSHa 120 (339)
....||+||+++|++||.+||++|..|++ +|++||..||..++
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFY 51 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHH
Confidence 46899999999999999999999999998 69999999999764
No 30
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.04 E-value=9e-11 Score=97.97 Aligned_cols=47 Identities=21% Similarity=0.342 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHcC-hhHHHHHHHhCCCCHHHHHHHHHHHHH
Q 019534 79 RESWTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 125 (339)
Q Consensus 79 r~~WT~EEh~lFLEaLqkyG-rdWkkIA~~VgTRT~~QIRSHaQKYf~ 125 (339)
++.||.|||++|++++++|| .+|..||++|++||..||+.||++|+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccC
Confidence 47899999999999999999 699999999999999999999988753
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.04 E-value=1.9e-10 Score=95.34 Aligned_cols=48 Identities=19% Similarity=0.437 Sum_probs=44.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCh-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 019534 77 KSRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyGr-dWkkIA~~VgTRT~~QIRSHaQKYf 124 (339)
..++.||.|||++|++++++||. +|..||++|++||..||+.||++|+
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 36789999999999999999995 8999999999999999999998764
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.04 E-value=1e-10 Score=96.90 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHH
Q 019534 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 124 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf 124 (339)
.++.||.|||++|++++++||.+|..||++|++||..||++||..++
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999987553
No 33
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.02 E-value=8e-10 Score=84.62 Aligned_cols=55 Identities=33% Similarity=0.425 Sum_probs=49.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCh---hHHHHHHHhC--CCCHHHHHHHHHHHHHHHhhc
Q 019534 76 TKSRESWTEQEHDKFLEALQLFDR---DWKKIEAFIG--SKTVIQIRSHAQKYFLKVQKN 130 (339)
Q Consensus 76 tk~r~~WT~EEh~lFLEaLqkyGr---dWkkIA~~Vg--TRT~~QIRSHaQKYf~kl~K~ 130 (339)
.+.+-.||+|+|++|++|++++|. -|++|-++++ +.|..||+||.|||+.++.|.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 467899999999999999999996 4899999987 579999999999999998763
No 34
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.99 E-value=4.8e-10 Score=87.66 Aligned_cols=45 Identities=20% Similarity=0.407 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCh----hHHHHHHHhCCCCHHHHHHHHHHH
Q 019534 79 RESWTEQEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQKY 123 (339)
Q Consensus 79 r~~WT~EEh~lFLEaLqkyGr----dWkkIA~~VgTRT~~QIRSHaQKY 123 (339)
...||.||+++|++||..|++ +|.+||++||+||..||+.||+.+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999985 899999999999999999987654
No 35
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.98 E-value=7.8e-10 Score=87.82 Aligned_cols=48 Identities=10% Similarity=0.340 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHcCh-hHHHHHHH----hCCCCHHHHHHHHHHHHHHH
Q 019534 80 ESWTEQEHDKFLEALQLFDR-DWKKIEAF----IGSKTVIQIRSHAQKYFLKV 127 (339)
Q Consensus 80 ~~WT~EEh~lFLEaLqkyGr-dWkkIA~~----VgTRT~~QIRSHaQKYf~kl 127 (339)
.+||.||+++|++++++||. +|+.|++. +..||..|||.||.+++.+.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999996 99999985 78999999999999987764
No 36
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.89 E-value=2.7e-09 Score=90.35 Aligned_cols=55 Identities=11% Similarity=0.327 Sum_probs=48.6
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHcCh-hHHHHHHHh----CCCCHHHHHHHHHHHHHHH
Q 019534 73 YTITKSRESWTEQEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKV 127 (339)
Q Consensus 73 ytitk~r~~WT~EEh~lFLEaLqkyGr-dWkkIA~~V----gTRT~~QIRSHaQKYf~kl 127 (339)
....+.++.||.||++.|++++++||. +|..|+++. ..||..|||.+|..++...
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 334567899999999999999999996 999999875 7899999999999987764
No 37
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.89 E-value=7.5e-09 Score=87.76 Aligned_cols=52 Identities=13% Similarity=0.324 Sum_probs=46.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCh-hHHHHHHHh----CCCCHHHHHHHHHHHHHHH
Q 019534 76 TKSRESWTEQEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKV 127 (339)
Q Consensus 76 tk~r~~WT~EEh~lFLEaLqkyGr-dWkkIA~~V----gTRT~~QIRSHaQKYf~kl 127 (339)
.+.+..||.||++.|++++++||. +|..|+++. ..||..|||.+|.+++...
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 346789999999999999999996 999999764 7899999999999987664
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.88 E-value=7e-10 Score=94.80 Aligned_cols=48 Identities=23% Similarity=0.441 Sum_probs=44.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHH
Q 019534 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 124 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf 124 (339)
..++.||.||+++|++++++||.+|..||++|++||..||++||..++
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 155 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTT
T ss_pred ccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999987543
No 39
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.87 E-value=2.9e-09 Score=81.70 Aligned_cols=44 Identities=27% Similarity=0.455 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcChhHHHHHH-HhCCCCHHHHHHHH
Q 019534 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEA-FIGSKTVIQIRSHA 120 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyGrdWkkIA~-~VgTRT~~QIRSHa 120 (339)
+....||+||+++|++||.+||++|..|++ +|++||..||..++
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHH
Confidence 456899999999999999999999999999 79999999999875
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.86 E-value=1.9e-09 Score=92.15 Aligned_cols=48 Identities=17% Similarity=0.384 Sum_probs=44.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCh-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 019534 77 KSRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyGr-dWkkIA~~VgTRT~~QIRSHaQKYf 124 (339)
..++.||.|||++|++++++||. +|..||++|++||..||+.||++|+
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 46799999999999999999995 8999999999999999999998774
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.86 E-value=2.4e-09 Score=88.61 Aligned_cols=51 Identities=10% Similarity=0.353 Sum_probs=45.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCh-hHHHHHHHh----CCCCHHHHHHHHHHHHHH
Q 019534 76 TKSRESWTEQEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLK 126 (339)
Q Consensus 76 tk~r~~WT~EEh~lFLEaLqkyGr-dWkkIA~~V----gTRT~~QIRSHaQKYf~k 126 (339)
.+.+..||.||++.|++|+++||. +|..|++.. ..||..||+.+|.+++.+
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 357899999999999999999996 999999754 789999999999887654
No 42
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.84 E-value=3.4e-09 Score=80.83 Aligned_cols=46 Identities=13% Similarity=0.427 Sum_probs=42.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcChhHHHHH---HHhCCCCHHHHHHHHHH
Q 019534 77 KSRESWTEQEHDKFLEALQLFDRDWKKIE---AFIGSKTVIQIRSHAQK 122 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyGrdWkkIA---~~VgTRT~~QIRSHaQK 122 (339)
.++..||+||++.|++|+++||..|++|+ .|+..||.+.++.+|..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~ 54 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHR 54 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHH
Confidence 46789999999999999999999999999 58889999999998754
No 43
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.74 E-value=1.1e-08 Score=82.64 Aligned_cols=43 Identities=26% Similarity=0.404 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHH
Q 019534 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 120 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHa 120 (339)
....||+||+++|.+++.+||++|.+|+++|++||..||..|+
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHH
Confidence 4689999999999999999999999999999999999999875
No 44
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.65 E-value=1.2e-08 Score=95.29 Aligned_cols=50 Identities=20% Similarity=0.377 Sum_probs=45.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcChh------HHHHHHHhCCCCHHHHHHHHHHHHHH
Q 019534 77 KSRESWTEQEHDKFLEALQLFDRD------WKKIEAFIGSKTVIQIRSHAQKYFLK 126 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyGrd------WkkIA~~VgTRT~~QIRSHaQKYf~k 126 (339)
.++..||+|||+++|+++++||.. |..||+++++||..|||+||..|+.+
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 356899999999999999999964 99999999999999999999998766
No 45
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.63 E-value=2.4e-09 Score=84.19 Aligned_cols=43 Identities=23% Similarity=0.530 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCh----hHHHHHHHhCCCCHHHHHHHHH
Q 019534 79 RESWTEQEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQ 121 (339)
Q Consensus 79 r~~WT~EEh~lFLEaLqkyGr----dWkkIA~~VgTRT~~QIRSHaQ 121 (339)
...||.||+++|..||.+|++ +|.+||+.||+||+.||+.||+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 468999999999999999995 8999999999999999999986
No 46
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.93 E-value=2.2e-05 Score=63.84 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHHHcChhHHHHHHHh-----CCCCHHHHHHHHHHHHHHHhhc
Q 019534 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFI-----GSKTVIQIRSHAQKYFLKVQKN 130 (339)
Q Consensus 79 r~~WT~EEh~lFLEaLqkyGrdWkkIA~~V-----gTRT~~QIRSHaQKYf~kl~K~ 130 (339)
...||.||.+.|++.+++||-+|..|+... +.||.+++|+|+-...+++.+.
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999888 5799999999987766666543
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.82 E-value=2.1e-05 Score=58.56 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHc--------C-hhHHHHHH-HhCCCCHHHHHHHHHHHH
Q 019534 79 RESWTEQEHDKFLEALQLF--------D-RDWKKIEA-FIGSKTVIQIRSHAQKYF 124 (339)
Q Consensus 79 r~~WT~EEh~lFLEaLqky--------G-rdWkkIA~-~VgTRT~~QIRSHaQKYf 124 (339)
+..||+|||..|++.|..| | .-|+.|++ .+..+|..++|.||.|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999 6 49999999 899999999999998864
No 48
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.58 E-value=0.0007 Score=55.42 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCh---hHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 019534 78 SRESWTEQEHDKFLEALQLFDR---DWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyGr---dWkkIA~~VgTRT~~QIRSHaQKYf~kl~K 129 (339)
.-.-||.|||.-+|...++-|. .|..||+.++.|++.||+.|+|....-+++
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999995 999999999999999999999886554444
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.13 E-value=6.7e-05 Score=75.86 Aligned_cols=42 Identities=14% Similarity=0.426 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHH
Q 019534 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 120 (339)
Q Consensus 79 r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHa 120 (339)
...||.+|..+|.++|.+||++|..|+++|++|+..+|..||
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFY 230 (482)
T ss_dssp ------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHh
Confidence 358999999999999999999999999999999999999875
No 50
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.00 E-value=0.00074 Score=64.74 Aligned_cols=48 Identities=19% Similarity=0.422 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHcCh-hHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 019534 80 ESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (339)
Q Consensus 80 ~~WT~EEh~lFLEaLqkyGr-dWkkIA~~VgTRT~~QIRSHaQKYf~kl 127 (339)
+.||..+-..|+.|+.+||+ +|..||+.|++||..+|+.|++-|+.+.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 57999999999999999998 9999999999999999999998877665
No 51
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.94 E-value=0.0022 Score=52.25 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHHHcChhHHHHHHHh-----CCCCHHHHHHHHHHHHHHHhhc
Q 019534 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFI-----GSKTVIQIRSHAQKYFLKVQKN 130 (339)
Q Consensus 79 r~~WT~EEh~lFLEaLqkyGrdWkkIA~~V-----gTRT~~QIRSHaQKYf~kl~K~ 130 (339)
...||.||.+.|++.+++|+-+|--|+... +.||.+++|.|+-...+++.+.
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999655 3799999999987777776553
No 52
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.76 E-value=0.0025 Score=49.35 Aligned_cols=51 Identities=14% Similarity=0.289 Sum_probs=40.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC----------hhHHHHHHHhC----CCCHHHHHHHHHHHHHHH
Q 019534 77 KSRESWTEQEHDKFLEALQLFD----------RDWKKIEAFIG----SKTVIQIRSHAQKYFLKV 127 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyG----------rdWkkIA~~Vg----TRT~~QIRSHaQKYf~kl 127 (339)
+.+..||.+|..+||++..... ..|..||+.+. .||+.||+..|......-
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3568999999999999996532 28999997764 799999999987654443
No 53
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.59 E-value=0.00035 Score=54.44 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHcCh---hHHHHHHHhCCCCHHHHHHHHHHHHH
Q 019534 80 ESWTEQEHDKFLEALQLFDR---DWKKIEAFIGSKTVIQIRSHAQKYFL 125 (339)
Q Consensus 80 ~~WT~EEh~lFLEaLqkyGr---dWkkIA~~VgTRT~~QIRSHaQKYf~ 125 (339)
..||.|||.-+|...++-|. .|..||+-+ .||+.||..|+|....
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 47999999999999999996 999999988 7999999999887543
No 54
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.98 E-value=0.015 Score=55.76 Aligned_cols=53 Identities=15% Similarity=0.310 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCh----hHHHHH------------HHhCCCCHHHHHHHHHHHHHHHhhc
Q 019534 78 SRESWTEQEHDKFLEALQLFDR----DWKKIE------------AFIGSKTVIQIRSHAQKYFLKVQKN 130 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyGr----dWkkIA------------~~VgTRT~~QIRSHaQKYf~kl~K~ 130 (339)
++..||+|||..||-+|.+||- +|..|- -||.+||+.+|..|++-....+.|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE 279 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE 279 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 5568999999999999999993 999996 3888999999999998877776664
No 55
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.35 E-value=0.03 Score=49.07 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcC---hhHHHHHHH--hCCCCHHHHHHHHHHHHHHHhh
Q 019534 78 SRESWTEQEHDKFLEALQLFD---RDWKKIEAF--IGSKTVIQIRSHAQKYFLKVQK 129 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyG---rdWkkIA~~--VgTRT~~QIRSHaQKYf~kl~K 129 (339)
....||+.|-..|+.++.+|| .+|..|++. +..||..+|+.+++.+.....+
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999 389999865 4589999999988887666543
No 56
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.20 E-value=0.046 Score=47.84 Aligned_cols=49 Identities=16% Similarity=0.399 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-hhHHHHHH--H------------hCCCCHHHHHHHHHHHHHHH
Q 019534 78 SRESWTEQEHDKFLEALQLFD-RDWKKIEA--F------------IGSKTVIQIRSHAQKYFLKV 127 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyG-rdWkkIA~--~------------VgTRT~~QIRSHaQKYf~kl 127 (339)
....||.+||..||.|+.+|| ++|.+|-. - ..+++...+..|+. |++++
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~ 196 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKL 196 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHH
Confidence 456799999999999999999 79999963 1 12456778888885 44443
No 57
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=93.70 E-value=0.069 Score=52.64 Aligned_cols=47 Identities=21% Similarity=0.449 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHcCh-hHHHHHHHhC-CCCHHHHHHHHHHHHHH
Q 019534 80 ESWTEQEHDKFLEALQLFDR-DWKKIEAFIG-SKTVIQIRSHAQKYFLK 126 (339)
Q Consensus 80 ~~WT~EEh~lFLEaLqkyGr-dWkkIA~~Vg-TRT~~QIRSHaQKYf~k 126 (339)
..||..+=..|+.|+.+||+ +...||..|+ +||..+|+.+++-|+.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~R 172 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSN 172 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 58999999999999999998 8999999998 99999999888766655
No 58
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=93.69 E-value=0.11 Score=48.73 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=25.0
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 019534 100 DWKKIEAFIGSKTVIQIRSHAQKYFLK 126 (339)
Q Consensus 100 dWkkIA~~VgTRT~~QIRSHaQKYf~k 126 (339)
.|++||++++.||...+|.+|.|++.+
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~ 199 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLA 199 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhh
Confidence 799999999999999999999987655
No 59
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=91.18 E-value=0.25 Score=39.71 Aligned_cols=55 Identities=25% Similarity=0.524 Sum_probs=37.8
Q ss_pred HHHHHHHHcC--------hhHHHHHHHhCCC-----CHHHHHHHHHHHHHH---HhhcCCCCCCCCCCCCC
Q 019534 89 KFLEALQLFD--------RDWKKIEAFIGSK-----TVIQIRSHAQKYFLK---VQKNGTSEHVPPPRPKR 143 (339)
Q Consensus 89 lFLEaLqkyG--------rdWkkIA~~VgTR-----T~~QIRSHaQKYf~k---l~K~g~~e~iPppr~KR 143 (339)
+|-.++...| +.|++|++.+|-- ...++|.||++|+.. ..+......+|+..||+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~~~~~~p~~~~~~ 107 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPPIKPRK 107 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHHTSSSSCTTCSCC
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 3445566777 3899999988832 247899999998443 33344556788887764
No 60
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=88.67 E-value=0.35 Score=45.57 Aligned_cols=27 Identities=26% Similarity=0.694 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHcC-hhHHHHH
Q 019534 79 RESWTEQEHDKFLEALQLFD-RDWKKIE 105 (339)
Q Consensus 79 r~~WT~EEh~lFLEaLqkyG-rdWkkIA 105 (339)
.-.|+.+|+..||.||-+|| +.|.+|.
T Consensus 168 ~c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 168 SSNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 35699999999999999999 6999996
No 61
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=85.83 E-value=2.3 Score=42.01 Aligned_cols=54 Identities=13% Similarity=0.270 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCh----hHHHHHH------------HhCCCCHHHHHHHHHHHHHHHhhcC
Q 019534 78 SRESWTEQEHDKFLEALQLFDR----DWKKIEA------------FIGSKTVIQIRSHAQKYFLKVQKNG 131 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyGr----dWkkIA~------------~VgTRT~~QIRSHaQKYf~kl~K~g 131 (339)
++..||+|||..||-+|.+||- .|..|-. |+.+||+.+|..|+.-....+.|..
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE~ 296 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKEF 296 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999993 7999932 3779999999999987777777653
No 62
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=84.80 E-value=1 Score=35.92 Aligned_cols=48 Identities=25% Similarity=0.416 Sum_probs=36.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCh--hH--------------HHHHHHhC-----CCCHHHHHHHHHHHH
Q 019534 77 KSRESWTEQEHDKFLEALQLFDR--DW--------------KKIEAFIG-----SKTVIQIRSHAQKYF 124 (339)
Q Consensus 77 k~r~~WT~EEh~lFLEaLqkyGr--dW--------------kkIA~~Vg-----TRT~~QIRSHaQKYf 124 (339)
+..+.|.++=|..|+|||..|-. .| .-|+.||. .||..||-+|-|-.-
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk 72 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA 72 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHH
Confidence 45789999999999999998851 11 12555543 699999999998643
No 63
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=81.55 E-value=3 Score=39.26 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC---hhHHHHH--HHhCCCCHHHHHHHHHHH
Q 019534 78 SRESWTEQEHDKFLEALQLFD---RDWKKIE--AFIGSKTVIQIRSHAQKY 123 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyG---rdWkkIA--~~VgTRT~~QIRSHaQKY 123 (339)
..+.||+.|-..|+.++.+|| .+|..|+ .-+..|+...|+.-++-.
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~l 52 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEM 52 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 357899999999999999999 4999997 355678888877655543
No 64
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=74.95 E-value=3.3 Score=34.11 Aligned_cols=30 Identities=10% Similarity=0.397 Sum_probs=24.0
Q ss_pred hHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 019534 100 DWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 129 (339)
Q Consensus 100 dWkkIA~~VgTRT----~~QIRSHaQKYf~kl~K 129 (339)
.|++|++.+|--+ ..++|.||++|+..-.+
T Consensus 74 ~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 74 KWRELATNLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp CHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 8999999888543 57999999999766544
No 65
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=69.42 E-value=4.6 Score=32.88 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=24.8
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 019534 100 DWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (339)
Q Consensus 100 dWkkIA~~VgTRT~~QIRSHaQKYf~kl~ 128 (339)
.|+.|++.+|-....++|.||.+|+..-.
T Consensus 72 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 100 (116)
T 2li6_A 72 QWSMVAQRLQISDYQQLESIYFRILLPYE 100 (116)
T ss_dssp CHHHHHHHHTSCCTTHHHHHHHHHHSHHH
T ss_pred cHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 89999999987668999999999976543
No 66
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=65.59 E-value=13 Score=29.39 Aligned_cols=30 Identities=10% Similarity=0.304 Sum_probs=24.4
Q ss_pred hHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 019534 100 DWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 129 (339)
Q Consensus 100 dWkkIA~~VgTRT----~~QIRSHaQKYf~kl~K 129 (339)
.|+.|++.+|--. ..++|.||++|+..-..
T Consensus 67 ~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~ 100 (107)
T 2lm1_A 67 KWAKVANRMQYPSSKSVGATLKAHYERILHPFEV 100 (107)
T ss_dssp THHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 8999999988543 57999999999877544
No 67
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=65.17 E-value=9.5 Score=31.59 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=31.9
Q ss_pred HHHHHHHcC--------hhHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 019534 90 FLEALQLFD--------RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (339)
Q Consensus 90 FLEaLqkyG--------rdWkkIA~~VgTRT~~QIRSHaQKYf~kl~K 129 (339)
|-.++.+.| +.|+.|++-+|-....++|.||.+|+..-..
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 444455555 3999999999877799999999999888665
No 68
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=62.29 E-value=10 Score=30.82 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=29.8
Q ss_pred HHHHHHHHcC--------hhHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 019534 89 KFLEALQLFD--------RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 129 (339)
Q Consensus 89 lFLEaLqkyG--------rdWkkIA~~VgTRT----~~QIRSHaQKYf~kl~K 129 (339)
+|-.++...| +.|+.|++.+|-.. ..++|.||++|+..-..
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~ 96 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEM 96 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3445566666 38999999988543 67999999998666443
No 69
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=59.88 E-value=15 Score=30.13 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=29.1
Q ss_pred HHHHHHHcC--------hhHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 019534 90 FLEALQLFD--------RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 129 (339)
Q Consensus 90 FLEaLqkyG--------rdWkkIA~~VgTRT----~~QIRSHaQKYf~kl~K 129 (339)
|-.++.+.| +.|++|++.+|-.. ..++|.||++|+..-..
T Consensus 47 Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 47 LNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 344556666 38999999888532 46999999999776544
No 70
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=56.93 E-value=8.5 Score=29.94 Aligned_cols=30 Identities=17% Similarity=0.411 Sum_probs=23.2
Q ss_pred hhHHHHHHHhCCCC----HHHHHHHHHHHHHHHh
Q 019534 99 RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQ 128 (339)
Q Consensus 99 rdWkkIA~~VgTRT----~~QIRSHaQKYf~kl~ 128 (339)
+.|++|++.+|--. ..++|.||++|+..-.
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE 91 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYE 91 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHH
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 38999999887422 6799999999876543
No 71
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=54.84 E-value=21 Score=25.37 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcChhHHHHHHHhCC
Q 019534 84 EQEHDKFLEALQLFDRDWKKIEAFIGS 110 (339)
Q Consensus 84 ~EEh~lFLEaLqkyGrdWkkIA~~VgT 110 (339)
+-|.+.+.++|+.+|.++.+.|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 357888999999999999999999995
No 72
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=50.70 E-value=42 Score=23.02 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 019534 80 ESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (339)
Q Consensus 80 ~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl~K 129 (339)
..+++.|.+.|. ..-..|..++.||+.+|- +...|+.+..+-..++.+
T Consensus 14 ~~L~~~~r~il~-l~~~~g~s~~eIA~~lgi-s~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 14 ADLTTDQREALL-LTQLLGLSYADAAAVCGC-PVGTIRSRVARARDALLA 61 (70)
T ss_dssp TSSCHHHHHHHH-HHHTSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHH-HHHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 356666655544 334567899999999985 777888777666666643
No 73
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=48.98 E-value=28 Score=28.56 Aligned_cols=40 Identities=13% Similarity=0.220 Sum_probs=28.7
Q ss_pred HHHHHHHcC--------hhHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhh
Q 019534 90 FLEALQLFD--------RDWKKIEAFIGSK-----TVIQIRSHAQKYFLKVQK 129 (339)
Q Consensus 90 FLEaLqkyG--------rdWkkIA~~VgTR-----T~~QIRSHaQKYf~kl~K 129 (339)
|-.++...| +.|+.|++.+|-- ...++|.||.+|+..-..
T Consensus 57 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~ 109 (128)
T 1c20_A 57 LYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEC 109 (128)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 334455666 3899999988832 268999999999776543
No 74
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=48.58 E-value=57 Score=22.54 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 019534 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl~ 128 (339)
.-..+|+.|.+.|.. + ..|...+.||+.+|- +...|+.|..+-+.++.
T Consensus 8 ~~~~L~~~e~~il~~-~-~~g~s~~eIA~~l~i-s~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 8 SKPLLTKREREVFEL-L-VQDKTTKEIASELFI-SEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHC
Confidence 345688888877766 4 567799999999985 88889988877777764
No 75
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=48.48 E-value=34 Score=26.04 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=36.4
Q ss_pred HHHHHHHHHHc-----Ch--hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 019534 87 HDKFLEALQLF-----DR--DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHVPP 138 (339)
Q Consensus 87 h~lFLEaLqky-----Gr--dWkkIA~~VgTRT~~QIRSHaQKYf~kl~K~g~~e~iPp 138 (339)
.+.+|+.|+.+ |. .-..|++.+|- +...||. |+..+.+.|.....|.
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgv-S~~TVrr----~L~~Le~kG~I~R~~g 59 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGL-SIYQVRL----YLEQLHDVGVLEKVNA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTC-CHHHHHH----HHHHHHHTTSEEEESC
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCC-CHHHHHH----HHHHHHHCCcEEecCC
Confidence 46688888888 54 89999999998 7777775 6788888888666553
No 76
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=45.20 E-value=23 Score=29.91 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=23.3
Q ss_pred hHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhh
Q 019534 100 DWKKIEAFIGSK-----TVIQIRSHAQKYFLKVQK 129 (339)
Q Consensus 100 dWkkIA~~VgTR-----T~~QIRSHaQKYf~kl~K 129 (339)
.|++|++-+|-- ...++|.+|++|+..-..
T Consensus 87 ~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~ 121 (145)
T 2kk0_A 87 LWREITKGLNLPTSITSAAFTLRTQYMKYLYPYEC 121 (145)
T ss_dssp CHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 899999988742 257999999999665443
No 77
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=43.85 E-value=21 Score=29.67 Aligned_cols=31 Identities=16% Similarity=0.489 Sum_probs=24.0
Q ss_pred hhHHHHHHHhCC-C----CHHHHHHHHHHHHHHHhh
Q 019534 99 RDWKKIEAFIGS-K----TVIQIRSHAQKYFLKVQK 129 (339)
Q Consensus 99 rdWkkIA~~VgT-R----T~~QIRSHaQKYf~kl~K 129 (339)
+.|+.|+.-+|- + ...++|.||.||+..-..
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~ 99 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS 99 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC
Confidence 389999988873 2 257899999999877543
No 78
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=42.95 E-value=82 Score=23.80 Aligned_cols=48 Identities=15% Similarity=0.043 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 019534 80 ESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 130 (339)
Q Consensus 80 ~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl~K~ 130 (339)
...|+.|-+.|.. + ..|..-+.||+.+|- +...|+.|..+-+.++...
T Consensus 26 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGL-L-SEGLTNKQIADRMFL-AEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHH-H-HTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcCC
Confidence 4688888877766 4 778899999999986 8899999988888777443
No 79
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=42.61 E-value=37 Score=25.86 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHcChhHHHHHHHhCC
Q 019534 83 TEQEHDKFLEALQLFDRDWKKIEAFIGS 110 (339)
Q Consensus 83 T~EEh~lFLEaLqkyGrdWkkIA~~VgT 110 (339)
-.-|.+.+.++|+++|++..+.|+.+|-
T Consensus 49 ~~~E~~~i~~aL~~~~gn~~~aA~~LGI 76 (91)
T 1ntc_A 49 PELERTLLTTALRHTQGHKQEAARLLGW 76 (91)
T ss_dssp HHHHHHHHHHHHHHTTTCTTHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 3457888999999999999999999994
No 80
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=41.71 E-value=26 Score=29.01 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCh-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 019534 85 QEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (339)
Q Consensus 85 EEh~lFLEaLqkyGr-dWkkIA~~VgTRT~~QIRSHaQKYf~kl~K~g~ 132 (339)
+-+.++|+.|++-|+ .|+.||+.+|- +...|+.|. .++.+.|.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~-s~~tv~~rl----~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGL-STTPCWRRI----QKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTC-CHHHHHHHH----HHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCc-CHHHHHHHH----HHHHHCCC
Confidence 567889999999997 99999999985 788888865 45666665
No 81
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=39.08 E-value=52 Score=23.21 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 019534 81 SWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (339)
Q Consensus 81 ~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl~ 128 (339)
.+|+.|-+.|.. + ..|...+.||+.+|- +...|+.|..+-+.++.
T Consensus 16 ~L~~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSA-V-VAGLPNKSIAYDLDI-SPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHH-H-TTTCCHHHHHHHTTS-CHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHc
Confidence 356667666655 4 567799999999985 78888888777666653
No 82
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=36.30 E-value=68 Score=22.71 Aligned_cols=31 Identities=13% Similarity=0.019 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHcChhHHHHHHHhCC-CC
Q 019534 81 SWTEQEHDKFLEALQLFDRDWKKIEAFIGS-KT 112 (339)
Q Consensus 81 ~WT~EEh~lFLEaLqkyGrdWkkIA~~VgT-RT 112 (339)
...+-|.+.+.++|+++ ++..+.|+.+|- |+
T Consensus 17 ~l~~~Er~~I~~aL~~~-gn~~~aA~~LGIsr~ 48 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY-PSTRKLAQRLGVSHT 48 (61)
T ss_dssp SCSHHHHHHHHHHHHHS-CSHHHHHHHTTSCTH
T ss_pred HHHHHHHHHHHHHHHHh-CCHHHHHHHhCCCHH
Confidence 45567889999999999 788899999994 44
No 83
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=35.52 E-value=78 Score=23.28 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 019534 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (339)
Q Consensus 79 r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl~ 128 (339)
-...|+.|.+.|.. + ..|...++||+.+|- +...|+.|..+-+.++.
T Consensus 19 ~~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 19 VNQLTPRERDILKL-I-AQGLPNKMIARRLDI-TESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGGSCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHTT
T ss_pred HccCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHc
Confidence 35688888877766 4 678899999999984 88889988777666653
No 84
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=34.64 E-value=44 Score=25.77 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHcChhHHHHHHHhCC
Q 019534 82 WTEQEHDKFLEALQLFDRDWKKIEAFIGS 110 (339)
Q Consensus 82 WT~EEh~lFLEaLqkyGrdWkkIA~~VgT 110 (339)
..+-|.+.+.++|+++|.+..+.|+.+|-
T Consensus 38 l~~~Er~~I~~aL~~~~GN~s~AA~~LGI 66 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDRNVSETARRLNM 66 (81)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 33557788899999999999999999984
No 85
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=34.57 E-value=92 Score=24.01 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=22.2
Q ss_pred HcChhHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 019534 96 LFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (339)
Q Consensus 96 kyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl~ 128 (339)
..|...+.||+.+|- +...|+.+..+-..++.
T Consensus 122 ~~g~s~~EIA~~lgi-s~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 122 IRGYSYREIATILSK-NLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp TTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Confidence 346699999999984 66677766655555543
No 86
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=34.14 E-value=85 Score=23.84 Aligned_cols=47 Identities=15% Similarity=0.032 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 019534 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl 127 (339)
....-|..|.+.|.-.. .|..-+.||+.++- +...|+.|..+.+.|+
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~i-S~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADALHL-SKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHHTC-CHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 34567888887765544 78899999999985 8899999988877775
No 87
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=33.62 E-value=1e+02 Score=22.74 Aligned_cols=33 Identities=9% Similarity=-0.015 Sum_probs=22.4
Q ss_pred HcChhHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 019534 96 LFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (339)
Q Consensus 96 kyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl~K 129 (339)
..|...+.||+.+|- +...|+.|..+-+.++++
T Consensus 51 ~~g~s~~eIA~~lgi-s~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 51 YRGWSTAQIATDLGI-AEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 346688999999884 666677666655555543
No 88
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=32.67 E-value=1.2e+02 Score=21.38 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHH---cChhHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 019534 81 SWTEQEHDKFLEALQL---FDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (339)
Q Consensus 81 ~WT~EEh~lFLEaLqk---yGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl~ 128 (339)
.-++.|.+.|..-+-. .|..|+.||+.+|- +...|+.|-.+-+.++.
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~i-s~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGV-TRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTC-CHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Confidence 3456666655544322 46799999999984 67777777666666765
No 89
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=27.86 E-value=1.3e+02 Score=23.96 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCh-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 019534 85 QEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (339)
Q Consensus 85 EEh~lFLEaLqkyGr-dWkkIA~~VgTRT~~QIRSHaQKYf~kl~K~g~ 132 (339)
+-+.++|+.|+..|+ .|+.||+.+|- +...|+.| +.++.+.|.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~----l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNT-TRQRIARR----IDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTS-CHHHHHHH----HHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHH----HHHHHHCCC
Confidence 456688999999887 99999999995 77777765 445566665
No 90
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=27.63 E-value=1e+02 Score=25.91 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCh-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 019534 84 EQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (339)
Q Consensus 84 ~EEh~lFLEaLqkyGr-dWkkIA~~VgTRT~~QIRSHaQKYf~kl~K~g~ 132 (339)
++-+.++|+.|+..|+ .|..||+.+|- +...|+.| +.++.+.|.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lgl-S~~tv~~r----l~~L~~~G~ 70 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITGL-AESTIHER----IRKLRESGV 70 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTS-CHHHHHHH----HHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHH----HHHHHHCCC
Confidence 4567789999999997 99999999995 78888875 455666665
No 91
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=27.07 E-value=37 Score=28.38 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHHHHHcChhHHH
Q 019534 79 RESWTEQEHDKFLEALQLFDRDWKK 103 (339)
Q Consensus 79 r~~WT~EEh~lFLEaLqkyGrdWkk 103 (339)
...|++||.++++++...||..|.+
T Consensus 79 g~~~p~e~~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 79 GEPVPQDLLDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHHccchhc
Confidence 4499999999999999999999976
No 92
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=26.38 E-value=81 Score=25.37 Aligned_cols=56 Identities=16% Similarity=0.298 Sum_probs=40.8
Q ss_pred cCCCCCCHHH-----------HHHHHHHHHHcC-----hhHHH---HHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 019534 77 KSRESWTEQE-----------HDKFLEALQLFD-----RDWKK---IEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (339)
Q Consensus 77 k~r~~WT~EE-----------h~lFLEaLqkyG-----rdWkk---IA~~VgTRT~~QIRSHaQKYf~kl~K~g~ 132 (339)
-..+.||.|+ ..-++.-|+..| +.|+- |.....++...|...-|.++|..-.+.|+
T Consensus 11 ~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniKNVaKtanK~qLiaAY~~lfE~~~~~g~ 85 (88)
T 2lc3_A 11 GKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNKSIRKNRNCSQLIAAYKDFCEHGTKSGL 85 (88)
T ss_dssp CCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHHHHHHHSCHHHHHHHHHHHHHHTCTTTS
T ss_pred CccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHHHHHhcCcHHHHHHHHHHHHhccccccc
Confidence 3578999999 345666777777 36765 55666788999999988888877655554
No 93
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=26.23 E-value=97 Score=24.39 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcChhHHHHHHHhCC
Q 019534 84 EQEHDKFLEALQLFDRDWKKIEAFIGS 110 (339)
Q Consensus 84 ~EEh~lFLEaLqkyGrdWkkIA~~VgT 110 (339)
+-|...+.++|+.+|++..+.|+.+|-
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LGI 83 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMGI 83 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 457788899999999999999999994
No 94
>3fdq_A Motility gene repressor MOGR; protein-DNA complex, helix-turn-helix, minor groove binding, cytoplasm; 1.75A {Listeria monocytogenes}
Probab=26.22 E-value=1.7e+02 Score=25.71 Aligned_cols=63 Identities=30% Similarity=0.409 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHH---HcChhHHHHHHHhC-------CCCHHHHHHHHHHHHHHHhhc-CCCCCCCC--CCCCCC
Q 019534 78 SRESWTEQEHDKFLEALQ---LFDRDWKKIEAFIG-------SKTVIQIRSHAQKYFLKVQKN-GTSEHVPP--PRPKRK 144 (339)
Q Consensus 78 ~r~~WT~EEh~lFLEaLq---kyGrdWkkIA~~Vg-------TRT~~QIRSHaQKYf~kl~K~-g~~e~iPp--pr~KRk 144 (339)
..-.|=.-|-++|-+.++ .+|-+--.|+++|. -||..|..+-| | ++.+. -.-|+|+. |.||||
T Consensus 68 S~i~WLKsELELLya~YQf~q~h~lni~~iSk~iSkn~L~lFPKTeSQLQNTY---Y-KLKk~ei~fEnI~K~KPGRKrK 143 (170)
T 3fdq_A 68 SNISWLKIELELLSACYQIAILEDMKVLDISEMLSLNDLRIFPKTPSQLQNTY---Y-KLKKELIQVEDIPKNKPGRKRK 143 (170)
T ss_dssp SSEEECHHHHHHHHHHHHHHHHTTCCHHHHHHHHSTTTTCSSSSCHHHHHHHH---H-HHHTTSSCSSCEECCCCSCCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCchhhHHHHhhHhhhccCCCCHHHHHHHH---H-HHHhhhcchhhccccCCCcccc
Confidence 345799999999988774 45668888888876 48999988743 3 23332 23355554 345554
No 95
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=25.54 E-value=1.6e+02 Score=22.79 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 019534 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (339)
Q Consensus 79 r~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl 127 (339)
...-|+.|-+.|.- + ..|...+.||+.++- +...|+.|...-+.++
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L~i-S~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKLNR-SIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHHTS-CHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 35568888877654 3 368899999999986 8899999888777776
No 96
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=24.93 E-value=1.6e+02 Score=23.59 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCh-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 019534 85 QEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (339)
Q Consensus 85 EEh~lFLEaLqkyGr-dWkkIA~~VgTRT~~QIRSHaQKYf~kl~K~g~ 132 (339)
+-+.++|+.|+..|+ .|+.||+.+|- +...|+.|. .++.+.|.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~l----~~L~~~G~ 50 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITGL-AESTIHERI----RKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHCS-CHHHHHHHH----HHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHH----HHHHHCCC
Confidence 456688999999887 99999999995 777787764 45566665
No 97
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=23.38 E-value=1.1e+02 Score=21.21 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHH---HcChhHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 019534 83 TEQEHDKFLEALQ---LFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (339)
Q Consensus 83 T~EEh~lFLEaLq---kyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl~ 128 (339)
++.|.+.|...+- ..|..++.||+.+|- +...|+.|..+-+.++.
T Consensus 7 ~~~er~il~l~~~l~~~~g~s~~eIA~~lgi-s~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 7 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDV-TRERIRQIEAKALRKLR 54 (68)
T ss_dssp CHHHHHHHHHHTTTTSSSCCCHHHHHHHHTC-CHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHH
Confidence 4455544443321 236799999999984 77888877666666654
No 98
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=22.94 E-value=1.8e+02 Score=23.30 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=21.8
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 019534 98 DRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (339)
Q Consensus 98 GrdWkkIA~~VgTRT~~QIRSHaQKYf~kl~K 129 (339)
|..++.||+.+|- +...|+.|..+-..++.+
T Consensus 156 g~s~~EIA~~lgi-s~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 156 GLSYEEIAAIMDC-PVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp CCCHHHHHHHTTS-CHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Confidence 5689999999884 667777766655555543
No 99
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.61 E-value=1.2e+02 Score=22.48 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHHcChhHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 019534 80 ESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (339)
Q Consensus 80 ~~WT~EEh~lFLEaLqkyGrdWkkIA~~VgTRT~~QIRSHaQKYf~kl~ 128 (339)
...|+.|.+.|.- + ..|...+.||+.+|- +...|+.|..+-+.++.
T Consensus 28 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 28 EMLTEREMEILLL-I-AKGYSNQEIASASHI-TIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGCCSHHHHHHHH-H-HTTCCTTHHHHHHTC-CHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHC
Confidence 4578888877765 4 678899999999985 88889988777766653
No 100
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=21.61 E-value=1.7e+02 Score=22.22 Aligned_cols=48 Identities=13% Similarity=0.272 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcC---h-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 019534 84 EQEHDKFLEALQLFD---R-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHV 136 (339)
Q Consensus 84 ~EEh~lFLEaLqkyG---r-dWkkIA~~VgTRT~~QIRSHaQKYf~kl~K~g~~e~i 136 (339)
.+-++.+|+.|+..| + .-..||+.+|- +...|+. ++.++.+.|.-..+
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv-sr~tV~~----~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGT-PKKEINR----VLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTC-CHHHHHH----HHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc-CHHHHHH----HHHHHHHCCCEEec
Confidence 455778999999999 5 88999999993 4455554 57778888765443
No 101
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=21.31 E-value=1.2e+02 Score=22.51 Aligned_cols=48 Identities=13% Similarity=0.262 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHcC---h-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCC
Q 019534 83 TEQEHDKFLEALQLFD---R-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEH 135 (339)
Q Consensus 83 T~EEh~lFLEaLqkyG---r-dWkkIA~~VgTRT~~QIRSHaQKYf~kl~K~g~~e~ 135 (339)
|.+-+..+|+.|..-| + .-..||+.+| -+...|+. ++.++.+.|.-+.
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg-vs~~tV~~----~L~~L~~~G~I~~ 63 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLG-TPKKEINR----VLYSLAKKGKLQK 63 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHC-CCHHHHHH----HHHHHHHHTSEEE
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHC-cCHHHHHH----HHHHHHHCCCEEe
Confidence 4556788999999998 5 8899999999 35455554 5667777766433
Done!