Your job contains 1 sequence.
>019538
MRTVPMCFSILEVPKGRINSLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTE
RWSRRRITTGTEGSKKTIQSHKLKNIKFEATSTTINVNKTEISKIQRIQHYDIEQIIAEN
KDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGI
TTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEV
PNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ
RLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSNQE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 019538
(339 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2148453 - symbol:DPD1 "defective in pollen org... 748 4.0e-74 1
TIGR_CMR|BA_3672 - symbol:BA_3672 "DNA polymerase III, ep... 180 1.2e-11 1
UNIPROTKB|Q74DD3 - symbol:GSU1383 "3'-to-5' exonuclease, ... 145 1.3e-09 1
TIGR_CMR|GSU_1383 - symbol:GSU_1383 "exonuclease" species... 145 1.3e-09 1
TIGR_CMR|NSE_0470 - symbol:NSE_0470 "DNA polymerase III, ... 146 3.0e-08 1
TIGR_CMR|BA_3955 - symbol:BA_3955 "DNA polymerase III, al... 159 4.4e-08 1
ZFIN|ZDB-GENE-110411-9 - symbol:si:ch1073-296i8.2 "si:ch1... 144 6.5e-08 1
TIGR_CMR|CPS_0780 - symbol:CPS_0780 "exonuclease" species... 131 1.1e-06 1
TIGR_CMR|CHY_1772 - symbol:CHY_1772 "DNA polymerase III, ... 146 1.2e-06 1
UNIPROTKB|Q10384 - symbol:MT2247 "Uncharacterized protein... 142 1.2e-06 1
TIGR_CMR|CBU_0317 - symbol:CBU_0317 "DNA polymerase III, ... 133 1.5e-06 1
TIGR_CMR|SPO_3889 - symbol:SPO_3889 "DNA polymerase III, ... 133 1.6e-06 1
TIGR_CMR|APH_0730 - symbol:APH_0730 "DNA polymerase III, ... 130 3.9e-06 1
UNIPROTKB|Q9KPX9 - symbol:VC_2233 "DNA polymerase III, ep... 126 1.2e-05 1
TIGR_CMR|VC_2233 - symbol:VC_2233 "DNA polymerase III, ep... 126 1.2e-05 1
UNIPROTKB|P03007 - symbol:dnaQ "DNA polymerase III, epsil... 125 1.5e-05 1
TIGR_CMR|SO_2245 - symbol:SO_2245 "DNA polymerase III, ep... 119 4.6e-05 1
TIGR_CMR|BA_1565 - symbol:BA_1565 "DnaQ family exonucleas... 127 9.3e-05 1
TIGR_CMR|SPO_1807 - symbol:SPO_1807 "exonuclease, DNA pol... 123 0.00010 1
RGD|1562245 - symbol:Trex2 "three prime repair exonucleas... 110 0.00026 2
DICTYBASE|DDB_G0287447 - symbol:DDB_G0287447 "DNA polymer... 117 0.00050 1
>TAIR|locus:2148453 [details] [associations]
symbol:DPD1 "defective in pollen organelle DNA
degradation1" species:3702 "Arabidopsis thaliana" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA;ISS;IDA] [GO:0005622 "intracellular"
evidence=IEA;ISS] [GO:0000738 "DNA catabolic process,
exonucleolytic" evidence=IMP] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0005739 EMBL:CP002688 GO:GO:0009536 GO:GO:0003676
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0000738
EMBL:BT025876 EMBL:AK175271 IPI:IPI00523862 RefSeq:NP_198046.1
RefSeq:NP_851082.1 RefSeq:NP_851083.1 RefSeq:NP_974842.1
UniGene:At.20000 ProteinModelPortal:Q682U6 SMR:Q682U6 PRIDE:Q682U6
EnsemblPlants:AT5G26940.1 EnsemblPlants:AT5G26940.2
EnsemblPlants:AT5G26940.3 EnsemblPlants:AT5G26940.4 GeneID:832752
KEGG:ath:AT5G26940 InParanoid:Q682U6 OMA:VPRMEEL
ProtClustDB:CLSN2686956 Genevestigator:Q682U6 Uniprot:Q682U6
Length = 316
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 158/319 (49%), Positives = 214/319 (67%)
Query: 6 MCFSILEVPKGRINSLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTERWSRR 65
MC SI +V + RI+S + C E H + + +S S KLL + ++ + RW RR
Sbjct: 1 MCISISQVSRLRIHSFGSSCCERVHGWIK---NSSSLKLLDVRASSVDGK----ARWIRR 53
Query: 66 RITTGTEGSKKTIQSHKLKNIKFEATSTTINVNKTEISKIQRIQHYDIEQIIAENKDLAK 125
++T T+GS+ +S L T +++ +K+Q + ++Q +A++KDL+K
Sbjct: 54 NVSTTTQGSRSNTKSSVLGG----TVPVTRIIDEESRTKVQPFGN--LQQRLAQDKDLSK 107
Query: 126 LVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKR-QVPNAHVHGITTDM 184
L+T IV D+ETTG R+NERIIEIA QD+ GG STFQTLVNP + NAH+HGI DM
Sbjct: 108 LLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGIRNDM 167
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
VC+P+VPRME+LIPI L YV+SRQKPGGY++ VAHN +SFD FLINEF+RCSYE+P+NW
Sbjct: 168 VCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNW 227
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
L +D+L LARE MKS + SL+AL +YY + G AHRA++DV LS + Q+LT
Sbjct: 228 LLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLTI 287
Query: 305 DLKLSLCDLIERGFTPSDL 323
DLKLSL DL+ R T SD+
Sbjct: 288 DLKLSLSDLVLRCHTASDI 306
>TIGR_CMR|BA_3672 [details] [associations]
symbol:BA_3672 "DNA polymerase III, epsilon subunit,
putative" species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573
HSSP:P03007 RefSeq:NP_845935.1 RefSeq:YP_020306.1
RefSeq:YP_029660.1 ProteinModelPortal:Q81Y85 DNASU:1089228
EnsemblBacteria:EBBACT00000011122 EnsemblBacteria:EBBACT00000018521
EnsemblBacteria:EBBACT00000024461 GeneID:1089228 GeneID:2815455
GeneID:2848298 KEGG:ban:BA_3672 KEGG:bar:GBAA_3672 KEGG:bat:BAS3404
HOGENOM:HOG000095225 OMA:KKYVLTE ProtClustDB:PRK06807
BioCyc:BANT260799:GJAJ-3466-MONOMER
BioCyc:BANT261594:GJ7F-3577-MONOMER Uniprot:Q81Y85
Length = 315
Score = 180 (68.4 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 57/172 (33%), Positives = 92/172 (53%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNA--HVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNPKR +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPKRPIPDRIMSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD-VNCLSL 297
+DT+ LA++ MK + P+ L+ L+ GI L S+H A D + C ++
Sbjct: 120 IDTVFLAKKYMK----HAPNH-KLETLKRMLGIRL--SSHNAFDDCITCAAV 164
>UNIPROTKB|Q74DD3 [details] [associations]
symbol:GSU1383 "3'-to-5' exonuclease, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573
HOGENOM:HOG000258615 RefSeq:NP_952436.1 ProteinModelPortal:Q74DD3
GeneID:2687906 KEGG:gsu:GSU1383 PATRIC:22025541 OMA:LINVNAP
ProtClustDB:CLSK763133 BioCyc:GSUL243231:GH27-1334-MONOMER
Uniprot:Q74DD3
Length = 181
Score = 145 (56.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 54/163 (33%), Positives = 80/163 (49%)
Query: 133 DIETTG-FSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVCKP 188
D+ETTG F +R++E+A + G+ S F +L+ + +P + +HGIT DM+
Sbjct: 11 DVETTGLFPGYGDRVVEVAAVLVDEGQIVSEFSSLIRVTKAIPRHVSMIHGITNDMLA-- 68
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
D P E++ P L ++ G L VAHNAR FD+ FL +EF R + N
Sbjct: 69 DQPLPEEVYPALGDFI-------GTALLVAHNAR-FDLAFLRHEFGRLGLSL--NSRSAC 118
Query: 249 TLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
TL LAR + + V Q L + +P HRA+ D
Sbjct: 119 TLELARRRLPELTDHRLETV-YQHL--FGAVPEGTRCHRALDD 158
>TIGR_CMR|GSU_1383 [details] [associations]
symbol:GSU_1383 "exonuclease" species:243231 "Geobacter
sulfurreducens PCA" [GO:0008150 "biological_process" evidence=ND]
[GO:0016797 "exonuclease activity, active with either ribo- or
deoxyribonucleic acids and producing 3'-phosphomonoesters"
evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
KO:K02342 TIGRFAMs:TIGR00573 HOGENOM:HOG000258615
RefSeq:NP_952436.1 ProteinModelPortal:Q74DD3 GeneID:2687906
KEGG:gsu:GSU1383 PATRIC:22025541 OMA:LINVNAP ProtClustDB:CLSK763133
BioCyc:GSUL243231:GH27-1334-MONOMER Uniprot:Q74DD3
Length = 181
Score = 145 (56.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 54/163 (33%), Positives = 80/163 (49%)
Query: 133 DIETTG-FSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVCKP 188
D+ETTG F +R++E+A + G+ S F +L+ + +P + +HGIT DM+
Sbjct: 11 DVETTGLFPGYGDRVVEVAAVLVDEGQIVSEFSSLIRVTKAIPRHVSMIHGITNDMLA-- 68
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
D P E++ P L ++ G L VAHNAR FD+ FL +EF R + N
Sbjct: 69 DQPLPEEVYPALGDFI-------GTALLVAHNAR-FDLAFLRHEFGRLGLSL--NSRSAC 118
Query: 249 TLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
TL LAR + + V Q L + +P HRA+ D
Sbjct: 119 TLELARRRLPELTDHRLETV-YQHL--FGAVPEGTRCHRALDD 158
>TIGR_CMR|NSE_0470 [details] [associations]
symbol:NSE_0470 "DNA polymerase III, epsilon subunit"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0004527
"exonuclease activity" evidence=ISS] [GO:0009360 "DNA polymerase
III complex" evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR006309 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 GO:GO:0004527
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003887 HOGENOM:HOG000258616
KO:K02342 TIGRFAMs:TIGR00573 TIGRFAMs:TIGR01406 RefSeq:YP_506355.1
ProteinModelPortal:Q2GDU1 STRING:Q2GDU1 GeneID:3932262
KEGG:nse:NSE_0470 PATRIC:22680989 OMA:IRVVQEK
ProtClustDB:CLSK2527834 BioCyc:NSEN222891:GHFU-491-MONOMER
Uniprot:Q2GDU1
Length = 228
Score = 146 (56.5 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 56/188 (29%), Positives = 91/188 (48%)
Query: 130 IVFDIETTGFSREN-ERIIEIAFQDLLGGE--NSTFQTLVNPKRQVPN--AHVHGITTDM 184
++ D ETTG +N +R+IEI +++ F +NP+R++ VHGIT +
Sbjct: 7 VILDTETTGLDMKNGDRVIEIGCVEVVDFRITGEIFHIYLNPEREISKEATRVHGITFEQ 66
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE-VPNN 243
+ D P+ D+ L ++ S + VAHNA SFD+ FL +E R +
Sbjct: 67 LA--DSPKFIDIADDFLKFIDSSE-------IVAHNA-SFDIRFLNSELIRARQRRLIKL 116
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQRL 302
+DTL +AR++ GS P+ SL AL + I L H A+ D L+ + L
Sbjct: 117 ENVIDTLAMARKIFP--GS--PA--SLDALCRRFRISLEQRELHGALLDAQLLARVYIEL 170
Query: 303 TFDLKLSL 310
+ ++S+
Sbjct: 171 SKGSQVSM 178
>TIGR_CMR|BA_3955 [details] [associations]
symbol:BA_3955 "DNA polymerase III, alpha subunit,
Gram-positive type" species:198094 "Bacillus anthracis str. Ames"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR004365 InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR006308 InterPro:IPR011708
InterPro:IPR012337 Pfam:PF01336 Pfam:PF02811 Pfam:PF07733
SMART:SM00479 SMART:SM00481 Pfam:PF00929 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006261 GO:GO:0090305 InterPro:IPR013520 SUPFAM:SSF53098
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008408
GO:GO:0003887 TIGRFAMs:TIGR00573 KO:K03763 OMA:IYGMEAN
ProtClustDB:PRK00448 HAMAP:MF_00356 TIGRFAMs:TIGR01405
HOGENOM:HOG000058064 InterPro:IPR024754 Pfam:PF11490
RefSeq:NP_846198.1 RefSeq:YP_020594.1 RefSeq:YP_029920.1
HSSP:P03007 ProteinModelPortal:Q81WL8 IntAct:Q81WL8
EnsemblBacteria:EBBACT00000010872 EnsemblBacteria:EBBACT00000014310
EnsemblBacteria:EBBACT00000022295 GeneID:1087547 GeneID:2820091
GeneID:2852033 KEGG:ban:BA_3955 KEGG:bar:GBAA_3955 KEGG:bat:BAS3669
BioCyc:BANT260799:GJAJ-3727-MONOMER
BioCyc:BANT261594:GJ7F-3843-MONOMER Uniprot:Q81WL8
Length = 1433
Score = 159 (61.0 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 61/195 (31%), Positives = 95/195 (48%)
Query: 117 IAENKDLAKLV--TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVP 173
IA N++ L T +VFD+ETTG S + +IE+A + GGE F++ NP + +
Sbjct: 404 IAYNEEHRLLADETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLS 463
Query: 174 NAHVH--GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLIN 231
+ GIT DM+ D P ++++ + K + G + L VAHNA SFD+ F+
Sbjct: 464 ATIIELTGITDDMLT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINV 513
Query: 232 EFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
F + E N + +DTL LAR L ++ L L + I L HRA+ D
Sbjct: 514 GFKKAGLEKTKNPV-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYD 566
Query: 292 VNCLSLILQRLTFDL 306
+L ++ D+
Sbjct: 567 TEATGYLLVKMLKDV 581
>ZFIN|ZDB-GENE-110411-9 [details] [associations]
symbol:si:ch1073-296i8.2 "si:ch1073-296i8.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR012337 Pfam:PF00929
ZFIN:ZDB-GENE-110411-9 GO:GO:0003676 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:CU651670 IPI:IPI00997361 RefSeq:XP_002666829.1
RefSeq:XP_003201423.1 Ensembl:ENSDART00000137950
Ensembl:ENSDART00000149117 GeneID:100005742 KEGG:dre:100005742
GeneTree:ENSGT00460000041710 NextBio:20786818 Uniprot:F1R5B7
Length = 235
Score = 144 (55.7 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 63/205 (30%), Positives = 97/205 (47%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKR--QVPNAHVHGITT--DMV 185
+ FD+ETTG E I+++A + GG TF + P+R Q + + G + +
Sbjct: 13 VFFDLETTGLDSSCE-IVQLAA--VSGGH--TFNLFMVPRRPFQRGASRITGFSVKHQRL 67
Query: 186 CKPDVPRM-EDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFL---INEFSRCSYEVP 241
P + L LL ++ S + + L + HN R FD P L ++EFS S+
Sbjct: 68 FLHRRPLLTSSLKEALLSFI-SFLRMLDHPLLLGHNIRRFDCPVLARALDEFSLRSHFQR 126
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
F+DTL LAR+L+K G + SL ++ G+ +AH A+ DV L Q+
Sbjct: 127 EVSGFVDTLPLARQLLKDHGLQSFKQESL--VKNLLGVSY--AAHNALEDVQAL----QK 178
Query: 302 LTFDLKLSLCDLIERGFTPSDLINP 326
L + LK S + + FT L NP
Sbjct: 179 LYWKLKPSANQIQQHTFTLDSLANP 203
>TIGR_CMR|CPS_0780 [details] [associations]
symbol:CPS_0780 "exonuclease" species:167879 "Colwellia
psychrerythraea 34H" [GO:0016797 "exonuclease activity, active with
either ribo- or deoxyribonucleic acids and producing
3'-phosphomonoesters" evidence=ISS] InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573
eggNOG:COG2176 RefSeq:YP_267529.1 ProteinModelPortal:Q488I5
STRING:Q488I5 GeneID:3519836 KEGG:cps:CPS_0780 PATRIC:21464867
HOGENOM:HOG000258615 OMA:TAPNHKL BioCyc:CPSY167879:GI48-866-MONOMER
Uniprot:Q488I5
Length = 203
Score = 131 (51.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 56/166 (33%), Positives = 77/166 (46%)
Query: 130 IVFDIETTGFSREN-ERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMV 185
I+ D ETTG S +N +R IEI L G FQ L+ P R V + A GIT M+
Sbjct: 7 IILDFETTGLSPDNGDRAIEIGAVKLENGVVTDRFQELMYPGRPVSHFIADYTGITNVML 66
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
K P +++ +++ + VAHNA SFD FL +E R S
Sbjct: 67 SKA-AP-CHEVMDRFSGFIQGQN-------LVAHNA-SFDKRFLDSELKRISSGYDGQ-- 114
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
F +L L+R L ++ ++ L L Y GI GS HRA+ D
Sbjct: 115 FACSLLLSRRLYQTAPNH-----KLGTLINYKGIASNGSFHRALYD 155
>TIGR_CMR|CHY_1772 [details] [associations]
symbol:CHY_1772 "DNA polymerase III, alpha subunit,
Gram-positive type" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003141 InterPro:IPR004013 InterPro:IPR004365
InterPro:IPR006054 InterPro:IPR006055 InterPro:IPR006308
InterPro:IPR011708 InterPro:IPR012337 Pfam:PF01336 Pfam:PF02811
Pfam:PF07733 SMART:SM00479 SMART:SM00481 Pfam:PF00929 GO:GO:0005737
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006261
GO:GO:0090305 InterPro:IPR013520 SUPFAM:SSF53098 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008408 GO:GO:0003887
TIGRFAMs:TIGR00573 eggNOG:COG2176 KO:K03763 OMA:IYGMEAN
HAMAP:MF_00356 TIGRFAMs:TIGR01405 RefSeq:YP_360592.1
ProteinModelPortal:Q3AB92 STRING:Q3AB92 GeneID:3727188
KEGG:chy:CHY_1772 PATRIC:21276655 HOGENOM:HOG000058064
BioCyc:CHYD246194:GJCN-1771-MONOMER InterPro:IPR024754 Pfam:PF11490
Uniprot:Q3AB92
Length = 1407
Score = 146 (56.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 72/254 (28%), Positives = 115/254 (45%)
Query: 99 KTEISKIQRIQHYDIEQ---IIAENKDLAKLVTAIV-FDIETTGFSRENERIIEIAFQDL 154
K I I ++ Y ++ ++ + L+ T IV FD ET+G S + + IIEI +
Sbjct: 360 KYGIKVIYGLEGYLVDDGLPVVFNPEPLSLKETPIVAFDFETSGLSSQRDEIIEIGAVKI 419
Query: 155 LGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPG 211
GE TF L+ P++ + + + GIT D++ K + + I L +
Sbjct: 420 FDGEIKETFSVLIRPQKPISAKISELTGITNDLLEKEGLD-FGEAIEKFLRFCD------ 472
Query: 212 GYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQ 271
G IL +AHNA +FD FL R +E + +D L L R L ++ L+
Sbjct: 473 GSIL-LAHNA-AFDYGFLRQALKRLGHE--RKFSVVDNLALVRILFPELKNH-----KLK 523
Query: 272 ALREYYGIPLVGSAHRAMADVNCLSLILQRLT---FDLKL-SLCDLIERGFTPSDLINPX 327
+ E+ + L + HRA+AD L+ + +L F+ L SL DL + + + IN
Sbjct: 524 TITEHLEVSL-NNHHRALADSYALAEVFLKLLPRLFERGLYSLDDLAKINY---NYINDR 579
Query: 328 XXXX--XXLVSNQE 339
LV NQE
Sbjct: 580 SKTYHVSILVKNQE 593
>UNIPROTKB|Q10384 [details] [associations]
symbol:MT2247 "Uncharacterized protein Rv2191/MT2247"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
InterPro:IPR000305 Pfam:PF00929 Pfam:PF01541 GO:GO:0005829
GO:GO:0005886 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006260 EMBL:BX842579
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 eggNOG:COG0322
SMART:SM00465 SUPFAM:SSF82771 PROSITE:PS50164 GO:GO:0003887
KO:K02342 TIGRFAMs:TIGR00573 PIR:H70783 RefSeq:NP_216707.1
RefSeq:NP_336719.1 RefSeq:YP_006515611.1 ProteinModelPortal:Q10384
SMR:Q10384 EnsemblBacteria:EBMYCT00000000128
EnsemblBacteria:EBMYCT00000072423 GeneID:13318880 GeneID:887265
GeneID:924179 KEGG:mtc:MT2247 KEGG:mtu:Rv2191 KEGG:mtv:RVBD_2191
PATRIC:18126696 TubercuList:Rv2191 HOGENOM:HOG000021021 OMA:PYNRRSR
ProtClustDB:PRK07883 Uniprot:Q10384
Length = 645
Score = 142 (55.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 58/184 (31%), Positives = 81/184 (44%)
Query: 128 TAIVFDIETTGFSREN------ERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH-- 178
T +V D+ETTG + I EI + GG F TLVNP+ +P V
Sbjct: 42 TFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLT 101
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GITT MV + P ++ ++P+ + G +L VAHNA FD+ FL RC
Sbjct: 102 GITTAMV--GNAPTIDAVLPMFFEFA------GDSVL-VAHNA-GFDIGFLRAAARRCDI 151
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLI 298
P + T+ LAR ++ PS V L AL + + HRA+ D +
Sbjct: 152 TWPQPQVLC-TMRLARRVLSR--DEAPS-VRLAALARLFAVAS-NPTHRALDDARATVDV 206
Query: 299 LQRL 302
L L
Sbjct: 207 LHAL 210
>TIGR_CMR|CBU_0317 [details] [associations]
symbol:CBU_0317 "DNA polymerase III, epsilon subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR006309 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 HOGENOM:HOG000258616 KO:K02342
OMA:HGITNEF TIGRFAMs:TIGR00573 TIGRFAMs:TIGR01406
RefSeq:NP_819360.2 ProteinModelPortal:Q83EK2 GeneID:1208199
KEGG:cbu:CBU_0317 PATRIC:17929325 ProtClustDB:CLSK913983
BioCyc:CBUR227377:GJ7S-325-MONOMER Uniprot:Q83EK2
Length = 236
Score = 133 (51.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 54/190 (28%), Positives = 87/190 (45%)
Query: 123 LAKLVTAIVFDIETTGF-SRENERIIEIAFQDLLGGE--NSTFQTLVNPKRQVPN--AHV 177
+ L+ IV D ETTG E RIIEI +++ + +NP+R + +
Sbjct: 1 MGNLMRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPERSIERDAIEI 60
Query: 178 HGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC- 236
HGIT + D P +D+ L+ ++K + + HNA FDV FL +E
Sbjct: 61 HGITDSFLI--DKPLFKDIATELISFLKGAE-------LIIHNA-PFDVGFLNHELKLTG 110
Query: 237 -SYEVPNNWL-FMDTLTLARELMKSGGSNLPSKVSLQAL-REYYGIPLVGSAHRAMADVN 293
S++ ++ +DTLT+AR+ K G + +L AL R Y+ H A+ D
Sbjct: 111 QSFKTLTHYCQVLDTLTIARQ--KHPGQHN----NLDALCRRYHVDNSNRDYHGALLDAE 164
Query: 294 CLSLILQRLT 303
L+ + +T
Sbjct: 165 LLAQVYLLMT 174
>TIGR_CMR|SPO_3889 [details] [associations]
symbol:SPO_3889 "DNA polymerase III, epsilon subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0004527 "exonuclease
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR006054 InterPro:IPR006055 InterPro:IPR006309
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
HOGENOM:HOG000258616 KO:K02342 OMA:HGITNEF TIGRFAMs:TIGR00573
TIGRFAMs:TIGR01406 RefSeq:YP_169077.1 ProteinModelPortal:Q5LLN3
GeneID:3196237 KEGG:sil:SPO3889 PATRIC:23381285
ProtClustDB:CLSK767422 Uniprot:Q5LLN3
Length = 241
Score = 133 (51.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 61/187 (32%), Positives = 87/187 (46%)
Query: 130 IVFDIETTGFSREN-ERIIEIAFQDLLG--GENSTFQTLVNPKRQVP-NAH-VHGITTDM 184
IV D ETTGF E +RI+EI +L +T+ +NP+R +P A VHGI D+
Sbjct: 4 IVLDTETTGFDPETGDRIVEIGAVELWNHIATGNTYHQYINPERMMPAEAFGVHGIGPDI 63
Query: 185 VCKPDVPRMEDLI----PILLHYVKSRQKPGGYIL---FVAHNARSFDVPFLINEFSRCS 237
+ P P + P+ + K Q ++ V HNA SFD+ FL E
Sbjct: 64 LEPPQQPEPGQVTLRDKPV---FAKVGQAFRDFVADSHLVIHNA-SFDMKFLNAELRWMG 119
Query: 238 Y-EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCL 295
E+P + +DTL +AR K GS P+ +L AL +GI H A+ D L
Sbjct: 120 LPEIPFDRA-IDTLGMARR--KFPGS--PA--TLDALCRRFGIDNSNRVLHGALLDAEIL 172
Query: 296 SLILQRL 302
+ + L
Sbjct: 173 AEVYLEL 179
>TIGR_CMR|APH_0730 [details] [associations]
symbol:APH_0730 "DNA polymerase III, epsilon subunit"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0004527
"exonuclease activity" evidence=ISS] [GO:0009360 "DNA polymerase
III complex" evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR006309 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0004527 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
HOGENOM:HOG000258616 KO:K02342 TIGRFAMs:TIGR00573
TIGRFAMs:TIGR01406 OMA:IRVVQEK RefSeq:YP_505310.1
ProteinModelPortal:Q2GJZ1 STRING:Q2GJZ1 GeneID:3931235
KEGG:aph:APH_0730 PATRIC:20950150 ProtClustDB:CLSK2463724
BioCyc:APHA212042:GHPM-747-MONOMER Uniprot:Q2GJZ1
Length = 244
Score = 130 (50.8 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 56/182 (30%), Positives = 85/182 (46%)
Query: 127 VTAIVFDIETTGFSREN-ERIIEIAFQDLLGG--ENSTFQTLVNPKRQVPNA--HVHGIT 181
V IV D ETTG + +RIIEI +L+ F ++P+R + A VHGIT
Sbjct: 3 VREIVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPERDISVAATRVHGIT 62
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
+ + +P+ ++ LL +++ V HNAR FD+ FL E R S +
Sbjct: 63 RESLI--GMPKFAEVADELLDFLQDSA-------LVIHNAR-FDMRFLEVEIERLSNKRA 112
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLILQ 300
+DTL +AR+ K G +P+ SL AL + + I H A+ D L+ +
Sbjct: 113 ITNTIVDTLEMARK--KFPG--MPA--SLDALCKRFNISTQERKFHGALKDATLLARVYV 166
Query: 301 RL 302
L
Sbjct: 167 EL 168
>UNIPROTKB|Q9KPX9 [details] [associations]
symbol:VC_2233 "DNA polymerase III, epsilon subunit"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR006309 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0009360
KO:K02342 ProtClustDB:PRK05711 TIGRFAMs:TIGR00573
TIGRFAMs:TIGR01406 OMA:ILAREKH HSSP:P03007 PIR:F82101
RefSeq:NP_231864.1 ProteinModelPortal:Q9KPX9 SMR:Q9KPX9
DNASU:2613155 GeneID:2613155 KEGG:vch:VC2233 PATRIC:20083511
Uniprot:Q9KPX9
Length = 247
Score = 126 (49.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 54/188 (28%), Positives = 83/188 (44%)
Query: 130 IVFDIETTGFSREN------ERIIEIAFQDLLGGE--NSTFQTLVNPKR--QVPNAHVHG 179
+V D ETTG +RE RIIEI +++ + F + P R Q+ VHG
Sbjct: 13 VVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQLEAIEVHG 72
Query: 180 ITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
IT + + D P +D+ + ++K + VAHNA FDV F+ EF++
Sbjct: 73 ITDEFL--KDKPEYKDVHEEFVDFIKGAE-------LVAHNA-PFDVGFMDYEFAKLGGA 122
Query: 240 VPNNWLFM---DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCL 295
+ F DTL +A+ + +NL L E YGI + H A+ D L
Sbjct: 123 IGKTSDFCKVTDTLAMAKRIFPGKRNNL------DILCERYGIDNSHRTLHGALLDAEIL 176
Query: 296 SLILQRLT 303
+ + +T
Sbjct: 177 ADVYLLMT 184
>TIGR_CMR|VC_2233 [details] [associations]
symbol:VC_2233 "DNA polymerase III, epsilon subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR006309 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0009360 KO:K02342 ProtClustDB:PRK05711 TIGRFAMs:TIGR00573
TIGRFAMs:TIGR01406 OMA:ILAREKH HSSP:P03007 PIR:F82101
RefSeq:NP_231864.1 ProteinModelPortal:Q9KPX9 SMR:Q9KPX9
DNASU:2613155 GeneID:2613155 KEGG:vch:VC2233 PATRIC:20083511
Uniprot:Q9KPX9
Length = 247
Score = 126 (49.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 54/188 (28%), Positives = 83/188 (44%)
Query: 130 IVFDIETTGFSREN------ERIIEIAFQDLLGGE--NSTFQTLVNPKR--QVPNAHVHG 179
+V D ETTG +RE RIIEI +++ + F + P R Q+ VHG
Sbjct: 13 VVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQLEAIEVHG 72
Query: 180 ITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
IT + + D P +D+ + ++K + VAHNA FDV F+ EF++
Sbjct: 73 ITDEFL--KDKPEYKDVHEEFVDFIKGAE-------LVAHNA-PFDVGFMDYEFAKLGGA 122
Query: 240 VPNNWLFM---DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCL 295
+ F DTL +A+ + +NL L E YGI + H A+ D L
Sbjct: 123 IGKTSDFCKVTDTLAMAKRIFPGKRNNL------DILCERYGIDNSHRTLHGALLDAEIL 176
Query: 296 SLILQRLT 303
+ + +T
Sbjct: 177 ADVYLLMT 184
>UNIPROTKB|P03007 [details] [associations]
symbol:dnaQ "DNA polymerase III, epsilon subunit"
species:83333 "Escherichia coli K-12" [GO:0005622 "intracellular"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0045004 "DNA
replication proofreading" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004527 "exonuclease activity" evidence=IEA;IDA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA]
InterPro:IPR006054 InterPro:IPR006055 InterPro:IPR006309
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0005622 EMBL:U70214 GO:GO:0004527
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0045004 EMBL:X04027 EMBL:K00985 PIR:A64746 RefSeq:NP_414751.1
RefSeq:YP_488512.1 PDB:1J53 PDB:1J54 PDB:1MGZ PDB:2GUI PDB:2IDO
PDB:2XY8 PDBsum:1J53 PDBsum:1J54 PDBsum:1MGZ PDBsum:2GUI
PDBsum:2IDO PDBsum:2XY8 ProteinModelPortal:P03007 SMR:P03007
DIP:DIP-9462N IntAct:P03007 MINT:MINT-1222832 SWISS-2DPAGE:P03007
EnsemblBacteria:EBESCT00000002781 EnsemblBacteria:EBESCT00000002782
EnsemblBacteria:EBESCT00000016960 GeneID:12933127 GeneID:946441
KEGG:ecj:Y75_p0206 KEGG:eco:b0215 PATRIC:32115543 EchoBASE:EB0239
EcoGene:EG10243 HOGENOM:HOG000258616 KO:K02342 OMA:HGITNEF
ProtClustDB:PRK05711 BioCyc:EcoCyc:EG10243-MONOMER
BioCyc:ECOL316407:JW0205-MONOMER BioCyc:MetaCyc:EG10243-MONOMER
ChEMBL:CHEMBL1075047 EvolutionaryTrace:P03007 Genevestigator:P03007
TIGRFAMs:TIGR00573 TIGRFAMs:TIGR01406 Uniprot:P03007
Length = 243
Score = 125 (49.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 54/187 (28%), Positives = 84/187 (44%)
Query: 130 IVFDIETTGFSR-----ENERIIEIAFQDLLGGE--NSTFQTLVNPKRQV-PNAH-VHGI 180
IV D ETTG ++ E +IIEI +++ + F + P R V P A VHGI
Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGI 68
Query: 181 TTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEV 240
+ + D P ++ + Y++ + V HNA +FD+ F+ EFS ++
Sbjct: 69 ADEFLL--DKPTFAEVADEFMDYIRGAE-------LVIHNA-AFDIGFMDYEFSLLKRDI 118
Query: 241 PNNWLFM---DTLTLARELMKSGGSNLPSKVSLQALREYYGIP-LVGSAHRAMADVNCLS 296
P F D+L +AR++ G N SL AL Y I + H A+ D L+
Sbjct: 119 PKTNTFCKVTDSLAVARKMFP-GKRN-----SLDALCARYEIDNSKRTLHGALLDAQILA 172
Query: 297 LILQRLT 303
+ +T
Sbjct: 173 EVYLAMT 179
>TIGR_CMR|SO_2245 [details] [associations]
symbol:SO_2245 "DNA polymerase III, epsilon subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
KO:K02342 TIGRFAMs:TIGR00573 HOGENOM:HOG000258615 HSSP:P03007
RefSeq:NP_717841.1 ProteinModelPortal:Q8EEW7 GeneID:1169977
KEGG:son:SO_2245 PATRIC:23524113 OMA:PPFSLMQ ProtClustDB:CLSK906649
Uniprot:Q8EEW7
Length = 212
Score = 119 (46.9 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 54/194 (27%), Positives = 87/194 (44%)
Query: 128 TAIVFDIETTGFS-RENERIIEIAFQDLLGGENST-FQTLVNPKRQVPNAHVHGITTDMV 185
T +V D ET+G S + R IEI + G+ +T F L+NP ++ NA + T +
Sbjct: 12 TLVVLDFETSGLSPNQGARAIEIGAVLIEQGQITTRFSELMNPGFRI-NAFIEDYTG--I 68
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
+ ++ + + G + L VAHNA +FD FL EF+ ++
Sbjct: 69 SNQMLAHAAPCAEVMARFAEFI---GKHHL-VAHNA-AFDQRFLDAEFAHIGHQYSGQ-- 121
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
F +L LAR L ++ L L + +P G+ HRA+AD + R+ D
Sbjct: 122 FGCSLLLARRLYPEAINH-----QLATLVRHKQLPNNGTFHRALADAEMTGHLWLRMLAD 176
Query: 306 LKLSLCDLIERGFT 319
LK ++E F+
Sbjct: 177 LKQDFA-IVEPPFS 189
>TIGR_CMR|BA_1565 [details] [associations]
symbol:BA_1565 "DnaQ family exonuclease/DinG family
helicase, putative" species:198094 "Bacillus anthracis str. Ames"
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0004527
"exonuclease activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR001650 InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR006310 InterPro:IPR006555 InterPro:IPR006935
InterPro:IPR012337 InterPro:IPR014013 Pfam:PF04851 Pfam:PF13307
PROSITE:PS51193 PROSITE:PS51194 SMART:SM00479 SMART:SM00491
Pfam:PF00929 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0005622 GO:GO:0006310 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 GO:GO:0008026
GO:GO:0003887 KO:K03722 TIGRFAMs:TIGR00573 RefSeq:NP_844015.1
RefSeq:YP_018187.1 RefSeq:YP_027721.1 ProteinModelPortal:Q81ST0
IntAct:Q81ST0 DNASU:1086736 EnsemblBacteria:EBBACT00000010766
EnsemblBacteria:EBBACT00000017129 EnsemblBacteria:EBBACT00000022124
GeneID:1086736 GeneID:2815613 GeneID:2849564 KEGG:ban:BA_1565
KEGG:bar:GBAA_1565 KEGG:bat:BAS1452 HOGENOM:HOG000041588
OMA:YLFAYAY ProtClustDB:PRK08074
BioCyc:BANT260799:GJAJ-1526-MONOMER
BioCyc:BANT261594:GJ7F-1589-MONOMER TIGRFAMs:TIGR01407
Uniprot:Q81ST0
Length = 934
Score = 127 (49.8 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 58/191 (30%), Positives = 90/191 (47%)
Query: 130 IVFDIETTGFSREN--ERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
+V D+ETTG S ++ ++I +IA + GE F + +NPKR++P + GI M
Sbjct: 6 VVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDESM 65
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY-EVPNN 243
V P ED+ P+++ ++ FVAHN FD FL E + Y E+ +
Sbjct: 66 V--KQAPLFEDVAPMVVELLQGAA-------FVAHNVH-FDWNFLTEELRQAGYTEI--H 113
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS-LILQRL 302
+DT+ LA+ L+ + S ++ Q E+ HRA +D + L LQ L
Sbjct: 114 CPKVDTVELAQILLPTADSYKLRDLAKQHELEH------DQPHRADSDALATAELFLQFL 167
Query: 303 TFDLKLSLCDL 313
KL L L
Sbjct: 168 NEIEKLPLVTL 178
>TIGR_CMR|SPO_1807 [details] [associations]
symbol:SPO_1807 "exonuclease, DNA polymerase III, epsilon
subunit family" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0004527 "exonuclease activity" evidence=ISS] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000014 InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00091 SMART:SM00479 Pfam:PF00929
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260
GO:GO:0005622 GO:GO:0004871 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573
RefSeq:YP_167044.1 ProteinModelPortal:Q5LSG1 GeneID:3193715
KEGG:sil:SPO1807 PATRIC:23376943 HOGENOM:HOG000146765 OMA:RIFLFFC
ProtClustDB:CLSK933644 Uniprot:Q5LSG1
Length = 470
Score = 123 (48.4 bits), Expect = 0.00010, P = 0.00010
Identities = 54/190 (28%), Positives = 84/190 (44%)
Query: 119 ENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE---NSTFQTLVNPKRQVPNA 175
E + L LV A VFD ETTG + I++I ++ G LV+P R +P A
Sbjct: 269 EARALDSLVFA-VFDTETTGLLPHKDEIVQIGAVRVVKGRIVPGERIDQLVDPGRPIPPA 327
Query: 176 --HVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEF 233
VHG++ MV P D++ + + + + VAHNA FD+ FL
Sbjct: 328 STRVHGVSDAMVA--GAP---DIVAAARQFHQFARDA----VIVAHNA-PFDIAFLRRHG 377
Query: 234 SRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADV 292
RC + + +DT+ L+ L G S + L AL + G+ + H A+ D
Sbjct: 378 PRCGLDWDHP--ILDTVLLSAVLF--GASETHT---LDALCDRLGVTIPAPLRHTALGDA 430
Query: 293 NCLSLILQRL 302
+ +L R+
Sbjct: 431 QATAEVLCRM 440
>RGD|1562245 [details] [associations]
symbol:Trex2 "three prime repair exonuclease 2" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 RGD:1562245
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:CH474099 OrthoDB:EOG4D52ZG
GeneTree:ENSGT00390000012715 CTD:11219 KO:K10791 OMA:SEGLARC
IPI:IPI00213790 RefSeq:NP_001101050.1 UniGene:Rn.63379
Ensembl:ENSRNOT00000023245 GeneID:309275 KEGG:rno:309275
NextBio:660527 Uniprot:D4A3I6
Length = 236
Score = 110 (43.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 38/128 (29%), Positives = 57/128 (44%)
Query: 175 AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFS 234
+ + G++++ + D + L SRQ+ G I VAHN +D P L E
Sbjct: 75 SEITGLSSEGLMNCRKAAFNDAVVRTLQGFLSRQE--GPICLVAHNGFDYDFPLLCTELQ 132
Query: 235 RCSYEVPNNWLFMDTLTLAREL--MKSGGSNLPSK--VSLQALREYYGIPLVGSAHRAMA 290
R +P + + +DTL R L + S G+ + SL +L Y +AH A
Sbjct: 133 RLGAHLPRDTVCLDTLPALRGLDRVHSHGTRAQGRKSYSLASLFHRYFQAEPSAAHSAEG 192
Query: 291 DVNCLSLI 298
DVN L LI
Sbjct: 193 DVNTLLLI 200
Score = 40 (19.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKR 170
T + D+E TG + I EI+ L S+ + NP+R
Sbjct: 9 TFVFLDLEATGLPNMDPEIAEIS---LFAVHRSSLE---NPER 45
>DICTYBASE|DDB_G0287447 [details] [associations]
symbol:DDB_G0287447 "DNA polymerase III, epsilon
subunit" species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 dictyBase:DDB_G0287447
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AAFI02000100
GO:GO:0004527 SUPFAM:SSF53098 GO:GO:0003887 TIGRFAMs:TIGR00573
RefSeq:XP_001733024.1 ProteinModelPortal:B0G161
EnsemblProtists:DDB0238737 GeneID:8626093 KEGG:ddi:DDB_G0287447
OMA:ICFDLET Uniprot:B0G161
Length = 483
Score = 117 (46.2 bits), Expect = 0.00050, P = 0.00050
Identities = 63/251 (25%), Positives = 116/251 (46%)
Query: 62 WSRRR--ITTGTEGSKKTIQSHKLKNIKFEATSTTINVNKTEISKIQRIQHYD-IEQIIA 118
W +++ + E K+ I S + K IK + S N ++ + ++ ++ Y +++
Sbjct: 235 WMKKKDNVNEHEEQYKQAISSFEEKTIKKQKISDNDNNDQNNNNNLEWLKLYKGFKEV-- 292
Query: 119 ENKDLA-KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENS--TFQTLVNPKRQV-P- 173
D+ K I FD+ET+G + ++ IIEI +L+ G + FQ+ PK Q+ P
Sbjct: 293 ---DIPIKKGRVICFDLETSGVT-SSDTIIEIGAVELIDGCRTGVIFQSYAQPKAQIHPV 348
Query: 174 NAHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEF 233
+ +H +T+ + P +E ++ + +V + P VAHN +FD LI E
Sbjct: 349 SEQIHQLTSLQLMS--APPIEIILASFMDWVGN--SP-----LVAHNL-AFDKRILIQEL 398
Query: 234 SRCSYEVPNN--WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
R Y +P N + T+ +++ +L S +S Q L+ L+ H A+ D
Sbjct: 399 IR--YNIPFNIDHICFCTMKYFKKIYNGLNYSLDS-IS-QKLK--INKLLLRKTHGALID 452
Query: 292 VNCLSLILQRL 302
L++I L
Sbjct: 453 SEILAIIYTHL 463
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 339 332 0.00090 116 3 11 22 0.37 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 609 (65 KB)
Total size of DFA: 225 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.81u 0.12s 27.93t Elapsed: 00:00:02
Total cpu time: 27.82u 0.12s 27.94t Elapsed: 00:00:02
Start: Mon May 20 17:21:16 2013 End: Mon May 20 17:21:18 2013