BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019538
(339 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225450649|ref|XP_002282861.1| PREDICTED: DNA polymerase III polC-type-like isoform 2 [Vitis
vinifera]
gi|225450651|ref|XP_002282855.1| PREDICTED: DNA polymerase III polC-type-like isoform 1 [Vitis
vinifera]
Length = 337
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/338 (66%), Positives = 263/338 (77%), Gaps = 8/338 (2%)
Query: 1 MRTVPMCFSILEVPKGRINSLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTE 60
MRTVPMCFSIL+VP+ RI++LA+F RESFHS S SFKLL S T GLE +S
Sbjct: 1 MRTVPMCFSILQVPRCRIHTLASFWRESFHSLGSTCRSSSSFKLLGSHTNGLEGGNS--R 58
Query: 61 RWSRRRITTGTEGSKKTIQSHKLKNIKFE------ATSTTINVNKTEISKIQRIQHYDIE 114
RW+RR ITT +EG K QS K NI+ E +TST + V+K EIS+ QRIQ+ +++
Sbjct: 59 RWTRRPITTKSEGRNKYTQSSKRSNIRHEIVDGTVSTSTKLIVDKLEISESQRIQYCEVQ 118
Query: 115 QIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN 174
+ + ENKDLAKLVT IVFD ETTG SR N+RIIEI QDL GGENSTFQTLVNP+R VPN
Sbjct: 119 EKVTENKDLAKLVTVIVFDTETTGLSRANDRIIEIGLQDLGGGENSTFQTLVNPERIVPN 178
Query: 175 AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFS 234
HVHGITT MV +PDVPR +DLIPILL YV+SRQKPGG IL+VAHN RSFDVPFLINEFS
Sbjct: 179 PHVHGITTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFS 238
Query: 235 RCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNC 294
RC+ EVP NW F+DTL LAREL+KS GS+LP SLQALREYY IPLVG AHR ++DV
Sbjct: 239 RCNTEVPPNWRFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPAHRVLSDVYT 298
Query: 295 LSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKS 332
LS +LQ LTF+LK+S+ +L++R FT SD+INPKKKK S
Sbjct: 299 LSQVLQMLTFNLKVSVANLLDRSFTASDIINPKKKKNS 336
>gi|296089746|emb|CBI39565.3| unnamed protein product [Vitis vinifera]
Length = 332
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/333 (65%), Positives = 258/333 (77%), Gaps = 8/333 (2%)
Query: 6 MCFSILEVPKGRINSLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTERWSRR 65
MCFSIL+VP+ RI++LA+F RESFHS S SFKLL S T GLE +S RW+RR
Sbjct: 1 MCFSILQVPRCRIHTLASFWRESFHSLGSTCRSSSSFKLLGSHTNGLEGGNS--RRWTRR 58
Query: 66 RITTGTEGSKKTIQSHKLKNIKFE------ATSTTINVNKTEISKIQRIQHYDIEQIIAE 119
ITT +EG K QS K NI+ E +TST + V+K EIS+ QRIQ+ ++++ + E
Sbjct: 59 PITTKSEGRNKYTQSSKRSNIRHEIVDGTVSTSTKLIVDKLEISESQRIQYCEVQEKVTE 118
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHG 179
NKDLAKLVT IVFD ETTG SR N+RIIEI QDL GGENSTFQTLVNP+R VPN HVHG
Sbjct: 119 NKDLAKLVTVIVFDTETTGLSRANDRIIEIGLQDLGGGENSTFQTLVNPERIVPNPHVHG 178
Query: 180 ITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
ITT MV +PDVPR +DLIPILL YV+SRQKPGG IL+VAHN RSFDVPFLINEFSRC+ E
Sbjct: 179 ITTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTE 238
Query: 240 VPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
VP NW F+DTL LAREL+KS GS+LP SLQALREYY IPLVG AHR ++DV LS +L
Sbjct: 239 VPPNWRFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPAHRVLSDVYTLSQVL 298
Query: 300 QRLTFDLKLSLCDLIERGFTPSDLINPKKKKKS 332
Q LTF+LK+S+ +L++R FT SD+INPKKKK S
Sbjct: 299 QMLTFNLKVSVANLLDRSFTASDIINPKKKKNS 331
>gi|255542840|ref|XP_002512483.1| exonuclease, putative [Ricinus communis]
gi|223548444|gb|EEF49935.1| exonuclease, putative [Ricinus communis]
Length = 334
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/337 (62%), Positives = 256/337 (75%), Gaps = 11/337 (3%)
Query: 1 MRTVPMCFSILEVPKGRINSLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTE 60
MR +PMCFSIL+VP+ R++++ANF +ESFHS +R+ G+ SF+LL SK+ GLE Y+
Sbjct: 1 MRIIPMCFSILQVPRCRLHTIANFWQESFHSSARKCGNKSSFRLLASKSDGLEG--GYSR 58
Query: 61 RWSRRRITTGTEGSKKTIQ-SHKLKNIKFE------ATSTTINVNKTEISKIQRIQHYDI 113
RW RR ++T TEG+ K Q K NI+ E +TS T++++KTEIS+ Q I++ DI
Sbjct: 59 RWIRRPVSTKTEGTNKITQYDSKSTNIRHEILDETVSTSATLSISKTEISEYQNIRYCDI 118
Query: 114 EQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVP 173
+ I EN DLAKLVT IVFD+ETTGFSRE ERIIEIA QDL GGENSTFQTL+NP R VP
Sbjct: 119 RREILENNDLAKLVTVIVFDLETTGFSREYERIIEIALQDLHGGENSTFQTLINPGRIVP 178
Query: 174 NAHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEF 233
N+H+HGITT MVCKP VPRMEDLIPILL Y++SRQKPGGY+L VAHN RSFDVPFLINEF
Sbjct: 179 NSHIHGITTHMVCKPHVPRMEDLIPILLQYIRSRQKPGGYVLLVAHNGRSFDVPFLINEF 238
Query: 234 SRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN 293
R +VP NWLFMDTL LAR+ MKS G + S SLQ LRE +GI L GSAHRAM+DV
Sbjct: 239 KRSGVDVPCNWLFMDTLPLARKWMKSKGLKISS--SLQGLREAFGIKLEGSAHRAMSDVR 296
Query: 294 CLSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKK 330
L+ + Q LTF+LK +L L+ FT S+LIN KKKK
Sbjct: 297 LLAKLFQMLTFNLKTTLPSLVAESFTASELINVKKKK 333
>gi|357511765|ref|XP_003626171.1| DNA polymerase III polC-type [Medicago truncatula]
gi|355501186|gb|AES82389.1| DNA polymerase III polC-type [Medicago truncatula]
Length = 332
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/334 (61%), Positives = 254/334 (76%), Gaps = 5/334 (1%)
Query: 1 MRTVPMCFSILEVPKGRINSLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTE 60
M+T M FS L+VP+ R++SLAN C ++FHSFS ++ S +LL S+ YGL Q + +
Sbjct: 1 MKTGSMIFSFLQVPRCRLHSLANNCGQTFHSFSNICENNSSVRLLGSRIYGL--QGGHRK 58
Query: 61 RWSRRRITTGTEGSKKTIQSHKLKNIKFE--ATSTTINVNKTEISKIQRIQHYDIEQIIA 118
+W+RR ITT TEGS T + I E +TS+T+NV KT++ + IQ+ DI Q IA
Sbjct: 59 KWTRRPITTNTEGSAGTKSRSTKQEILSETISTSSTVNVKKTQLGQFPEIQYCDIHQEIA 118
Query: 119 ENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVH 178
+NKDL+ LVT IVFDIETTGFSRENERIIEIA +DL GG NSTFQT VNP+R V N+H+H
Sbjct: 119 QNKDLSSLVTVIVFDIETTGFSRENERIIEIALRDLQGGPNSTFQTFVNPQRSVYNSHIH 178
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GITT MV +P VPRMEDL+PIL HYVKSR+KP GY+L+V HNAR FDVPF+INEF RCS
Sbjct: 179 GITTQMVSRPGVPRMEDLVPILFHYVKSREKPRGYVLWVGHNARVFDVPFIINEFRRCST 238
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLI 298
++P NWLF+DTL LAR+LMKS G+ LPS VSL +LR++Y I + G AHRAM DVN LSLI
Sbjct: 239 QIPPNWLFVDTLPLARQLMKSEGTKLPS-VSLDSLRKFYEIKVDGPAHRAMEDVNTLSLI 297
Query: 299 LQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKS 332
L +LT DLKL+L L+E+ FT +D+IN KKKK S
Sbjct: 298 LPKLTCDLKLTLSGLVEKSFTEADIINSKKKKNS 331
>gi|356572944|ref|XP_003554625.1| PREDICTED: DNA polymerase III polC-type-like [Glycine max]
Length = 329
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 213/338 (63%), Positives = 253/338 (74%), Gaps = 15/338 (4%)
Query: 1 MRTVPMCFSILEVPKGRINSLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTE 60
M+T M FS+L VP+ RI SLAN E+FHSFS G++ + +LL S+ YGL Q +
Sbjct: 1 MKTGSMIFSLLHVPRFRIQSLANCWGETFHSFSTTCGNNSNVRLLGSRIYGL--QGGQRK 58
Query: 61 RWSRRRITTGTEGSKKTIQSHKLKNIKFEATSTTI------NVNKTEISKIQRIQHYDIE 114
+W+R ITT EG T K K+IK E S TI NVNKT++ K Q IQ+ DI+
Sbjct: 59 KWTRP-ITTNIEGKGST----KSKSIKHEILSETILANATVNVNKTQLDKSQEIQYCDIQ 113
Query: 115 QIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN 174
Q IAENKDL+ T IVFDIETTGFSRENERIIEIA +DL GGENSTFQTLVNP+ +VPN
Sbjct: 114 QEIAENKDLSSY-TVIVFDIETTGFSRENERIIEIALRDLQGGENSTFQTLVNPQCKVPN 172
Query: 175 AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFS 234
+H+HGITT MV KP VPRMEDLIPILL YV+SR+KPGG ++FVAHNAR FDVPF+INE
Sbjct: 173 SHIHGITTHMVNKPGVPRMEDLIPILLQYVRSREKPGGDVIFVAHNARCFDVPFIINELR 232
Query: 235 RCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNC 294
R S E+P NWLF+DTL LAREL+KSGG+ L S SL ALR+ YGI + GSAHRAM DVN
Sbjct: 233 RYSVEIPPNWLFLDTLPLARELIKSGGTTL-SSTSLAALRDLYGIKVDGSAHRAMVDVNA 291
Query: 295 LSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKS 332
LSLIL RLT DLKL+L DL+++ FT SD+IN K KKK+
Sbjct: 292 LSLILSRLTSDLKLTLSDLVKKSFTESDIINSKNKKKN 329
>gi|356505791|ref|XP_003521673.1| PREDICTED: DNA polymerase III polC-type-like [Glycine max]
Length = 329
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 206/331 (62%), Positives = 243/331 (73%), Gaps = 15/331 (4%)
Query: 1 MRTVPMCFSILEVPKGRINSLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTE 60
M+T M FS+ VP+ RI SLAN E+FH FS G++ S +LL S+ YGL Q +
Sbjct: 1 MKTGSMIFSLFHVPRCRIQSLANCWGETFHGFSTTCGNNSSIRLLGSRIYGL--QGGQRK 58
Query: 61 RWSRRRITTGTEGSKKTIQSHKLKNIKFEATSTTI------NVNKTEISKIQRIQHYDIE 114
+W+R ITT TEG T K K+IK E S TI NVNKT++ + Q IQ DI+
Sbjct: 59 KWTRP-ITTNTEGKGST----KSKSIKHEILSETILANATANVNKTQLDQSQEIQDCDIQ 113
Query: 115 QIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN 174
Q IAENKDL+ T IVFDIETTGFSRENERIIEIA +DL GGENSTFQTLVNP+ +VPN
Sbjct: 114 QEIAENKDLSSY-TVIVFDIETTGFSRENERIIEIALRDLQGGENSTFQTLVNPQCKVPN 172
Query: 175 AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFS 234
+H+HGITT MV KPDVPRMEDLIPIL YV+SR+KPGG +LFVAHNAR FDVPF+I+E
Sbjct: 173 SHIHGITTQMVNKPDVPRMEDLIPILFQYVRSREKPGGDVLFVAHNARCFDVPFIISELR 232
Query: 235 RCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNC 294
R S ++P NWLF+DTL LARELMKS G S SL ALR+ YGI + GSAHRAM DVN
Sbjct: 233 RYSIKIPPNWLFLDTLPLARELMKS-GGTTLSSSSLAALRDLYGIKVDGSAHRAMVDVNT 291
Query: 295 LSLILQRLTFDLKLSLCDLIERGFTPSDLIN 325
LSLIL RLT DLKL+L DL+++ FT SD+IN
Sbjct: 292 LSLILSRLTSDLKLTLSDLVDKSFTESDIIN 322
>gi|449435615|ref|XP_004135590.1| PREDICTED: DNA polymerase III PolC-type-like [Cucumis sativus]
Length = 327
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/330 (56%), Positives = 238/330 (72%), Gaps = 9/330 (2%)
Query: 6 MCFSILEVPKGRINSLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTERWSRR 65
MC SI PK + LAN RE+FH +R +GH+ + LC + Y LE +RW+R+
Sbjct: 1 MCLSIFRFPKYGVPVLANLWRENFHPLNRNHGHNCWYDQLCFRIYNLEG--GRNKRWTRK 58
Query: 66 RITTGTEGSKKTIQSHKLKNIKFEA------TSTTINVNKTEISKIQRIQHYDIEQIIAE 119
ITT KT S K NI+ E S T+N+NK+E S+ Q++Q+ DI+ I +
Sbjct: 59 SITTKAGEKAKTNPSSKPTNIRNEILQESMLASCTVNINKSEKSETQKLQYCDIQPTIIK 118
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHG 179
+K+ A LVT I FDIETTGFSR +RI+EIAFQDL GGENSTFQTL+NP+ + N+++HG
Sbjct: 119 SKEFAHLVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPQCYITNSNIHG 178
Query: 180 ITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
I+ MV P VPRM++LIPI+L +VKSRQKPGGY+L VAHNAR+FDVPFL++EFSR S +
Sbjct: 179 ISNRMVDSPSVPRMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVD 238
Query: 240 VPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
+P NWLF DT+TLAR+LMK S + +K++LQAL EYYGI L G AHRA++DV LS IL
Sbjct: 239 IPLNWLFFDTMTLARQLMKLSDSKI-TKITLQALGEYYGIKLDGKAHRALSDVRLLSSIL 297
Query: 300 QRLTFDLKLSLCDLIERGFTPSDLINPKKK 329
QRLTFDLKL + DL+ER FTP DLIN KKK
Sbjct: 298 QRLTFDLKLDISDLVERAFTPLDLINKKKK 327
>gi|449517739|ref|XP_004165902.1| PREDICTED: DNA polymerase III PolC-type-like [Cucumis sativus]
Length = 334
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 185/329 (56%), Positives = 236/329 (71%), Gaps = 9/329 (2%)
Query: 6 MCFSILEVPKGRINSLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTERWSRR 65
MC SI PK + LAN RE+FH +R +GH+ + LC + Y LE +RW+R+
Sbjct: 1 MCLSIFRFPKYGVPVLANLWRENFHPLNRNHGHNCWYDQLCFRIYNLEG--GRNKRWTRK 58
Query: 66 RITTGTEGSKKTIQSHKLKNIKFEA------TSTTINVNKTEISKIQRIQHYDIEQIIAE 119
ITT KT S K NI+ E S T+N+NK+E S+ Q++Q+ DI+ I +
Sbjct: 59 SITTKAGEKAKTNPSSKPTNIRNEILQESVLASCTVNINKSEKSETQKLQYCDIQPTIIK 118
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHG 179
+K+ A LVT I FDIETTGFSR +RI+EIAFQDL GGENSTFQTL+NP+ + N+++HG
Sbjct: 119 SKEFAHLVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPQCYITNSNIHG 178
Query: 180 ITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
I+ MV P VP M++LIPI+L +VKSRQKPGGY+L VAHNAR+FDVPFL++EFSR S +
Sbjct: 179 ISNRMVDSPSVPSMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVD 238
Query: 240 VPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
+P NWLF DT+TLAR+LMK S + +K++LQAL EYYGI L G AHRA++DV LS IL
Sbjct: 239 IPLNWLFFDTMTLARQLMKLSDSKI-TKITLQALGEYYGIKLDGKAHRALSDVRLLSSIL 297
Query: 300 QRLTFDLKLSLCDLIERGFTPSDLINPKK 328
QRLTFDLKL + DL+ER FTP DLIN KK
Sbjct: 298 QRLTFDLKLDISDLVERAFTPLDLINKKK 326
>gi|147814790|emb|CAN74413.1| hypothetical protein VITISV_042394 [Vitis vinifera]
Length = 340
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/257 (68%), Positives = 207/257 (80%), Gaps = 6/257 (2%)
Query: 82 KLKNIKFE------ATSTTINVNKTEISKIQRIQHYDIEQIIAENKDLAKLVTAIVFDIE 135
K NI+ E +TST + V+K EIS+ QRIQ+ ++++ + ENKDLAKLVT IVFD E
Sbjct: 83 KRSNIRHEIVDGTVSTSTKLIVDKLEISESQRIQYCEVQEKVTENKDLAKLVTVIVFDTE 142
Query: 136 TTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVPRMED 195
TTG SR N+RIIEI QDL GGENSTFQTLVNP+R VPN HVHGITT MV +PDVPR +D
Sbjct: 143 TTGLSRANDRIIEIGLQDLGGGENSTFQTLVNPERIVPNPHVHGITTYMVNRPDVPRWKD 202
Query: 196 LIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARE 255
LIPILL YV+SRQKPGG IL+VAHN RSFDVPFLINEFSRC+ EVP NW FMDTL LARE
Sbjct: 203 LIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNWRFMDTLPLARE 262
Query: 256 LMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLKLSLCDLIE 315
+KS GS+LPS SLQALREY+ IPLVG AHR ++DV LS ILQ LTF+LK+S+ +L++
Sbjct: 263 FIKSAGSDLPSGASLQALREYFRIPLVGPAHRVLSDVYTLSQILQMLTFNLKVSVANLLD 322
Query: 316 RGFTPSDLINPKKKKKS 332
R FT SD+INPKKKK S
Sbjct: 323 RSFTASDIINPKKKKNS 339
>gi|356533554|ref|XP_003535328.1| PREDICTED: DNA polymerase III polC-type-like [Glycine max]
Length = 332
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 187/334 (55%), Positives = 242/334 (72%), Gaps = 6/334 (1%)
Query: 1 MRTVPMCFSILEVPKGRINSLANFCRESFHSFSRRYGHS-PSFKLLCSKTYGLEDQDSYT 59
MRT + FS+L+VP+ +I+SLAN+ E+ H FS+ YG++ S +LL + YGLE
Sbjct: 1 MRTGSLIFSLLQVPRCKIHSLANYGEEALHGFSKAYGNNNSSIRLLGPRIYGLER--GLN 58
Query: 60 ERWSRRRITTGTEGSKKTIQSHKLKNIKFEA-TSTTINVNKTEISKIQRIQHYDIEQIIA 118
+ +R I T EGSK+T + K K K E S T VN+T + + Q+I + D+++I A
Sbjct: 59 TKLIQRLIATRAEGSKQTTCNTKSKINKDEILASATAKVNRTRLDQSQKILYPDVQEI-A 117
Query: 119 ENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVH 178
+ ++L+ LVT IVFD+ETTG+S+ N+RIIEIA +DL GGENSTFQTLVNP+ VPN+ +H
Sbjct: 118 QYENLSDLVTIIVFDLETTGYSKVNDRIIEIALRDLKGGENSTFQTLVNPQCHVPNSRIH 177
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GI+T MV PDVPRMEDLIPILL Y+KSR+K GGY+L++AHN R+FD PFLI+EF RC
Sbjct: 178 GISTKMVNIPDVPRMEDLIPILLQYIKSREKQGGYVLWIAHNGRAFDAPFLIHEFFRCCA 237
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLI 298
E+P N LF+DTL L REL+KS G NL S SL ALRE+Y + + GSAHRAM DVN LS I
Sbjct: 238 ELPRNSLFLDTLPLGRELIKSEGRNL-SSASLVALREFYKVKVDGSAHRAMVDVNTLSQI 296
Query: 299 LQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKS 332
L LT+DLKL+L DLI + SDLIN KK KK+
Sbjct: 297 LPMLTYDLKLTLSDLIRKSLNISDLINAKKTKKN 330
>gi|357511767|ref|XP_003626172.1| DNA polymerase III polC-type [Medicago truncatula]
gi|355501187|gb|AES82390.1| DNA polymerase III polC-type [Medicago truncatula]
Length = 266
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 163/266 (61%), Positives = 202/266 (75%), Gaps = 4/266 (1%)
Query: 1 MRTVPMCFSILEVPKGRINSLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTE 60
M+T M FS L+VP+ R++SLAN C ++FHSFS ++ S +LL S+ YGL Q + +
Sbjct: 1 MKTGSMIFSFLQVPRCRLHSLANNCGQTFHSFSNICENNSSVRLLGSRIYGL--QGGHRK 58
Query: 61 RWSRRRITTGTEGSKKTIQSHKLKNIKFE--ATSTTINVNKTEISKIQRIQHYDIEQIIA 118
+W+RR ITT TEGS T + I E +TS+T+NV KT++ + IQ+ DI Q IA
Sbjct: 59 KWTRRPITTNTEGSAGTKSRSTKQEILSETISTSSTVNVKKTQLGQFPEIQYCDIHQEIA 118
Query: 119 ENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVH 178
+NKDL+ LVT IVFDIETTGFSRENERIIEIA +DL GG NSTFQT VNP+R V N+H+H
Sbjct: 119 QNKDLSSLVTVIVFDIETTGFSRENERIIEIALRDLQGGPNSTFQTFVNPQRSVYNSHIH 178
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GITT MV +P VPRMEDL+PIL HYVKSR+KP GY+L+V HNAR FDVPF+INEF RCS
Sbjct: 179 GITTQMVSRPGVPRMEDLVPILFHYVKSREKPRGYVLWVGHNARVFDVPFIINEFRRCST 238
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNL 264
++P NWLF+DTL LAR+LMKS GS L
Sbjct: 239 QIPPNWLFVDTLPLARQLMKSEGSFL 264
>gi|51969194|dbj|BAD43289.1| unknown protein [Arabidopsis thaliana]
Length = 316
Score = 303 bits (776), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 161/327 (49%), Positives = 216/327 (66%), Gaps = 14/327 (4%)
Query: 6 MCFSILEVPKGRINSLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTERWSRR 65
MC SI +V + RI+S + C E H + + +S S KLL + ++ + RW RR
Sbjct: 1 MCISISQVSRLRIHSFGSSCCERVHGWIK---NSSSLKLLDVRASSVDGK----ARWIRR 53
Query: 66 RITTGTEGSKKTIQSHKLKNIKFEATSTTINVNKTEISKIQRIQHYDIEQIIAENKDLAK 125
++T T+GS+ +S L T +++ +K+Q +++Q +A++KDL+K
Sbjct: 54 NVSTTTQGSRSNTKSSVLGG----TVPVTRIIDEESRTKVQPFG--NLQQRLAQDKDLSK 107
Query: 126 LVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKR-QVPNAHVHGITTDM 184
L+T IV D+ETTG RENERIIEIA QD+ GG STFQTLVNP + NAH+HGI DM
Sbjct: 108 LLTVIVSDLETTGLHRENERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGIRNDM 167
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
VC+P+VPRME+LIPI L YV+SRQKPGGY++ VAHN +SFD FLINEF+RCSYE+P+NW
Sbjct: 168 VCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNW 227
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
L +D+L LARE MKS + SL+AL +YY + G AHRA++DV LS + Q+LT
Sbjct: 228 LLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLTI 287
Query: 305 DLKLSLCDLIERGFTPSDLINPKKKKK 331
DLKLSL DL+ R T SD+ K K
Sbjct: 288 DLKLSLSDLVLRCHTASDISAAMAKNK 314
>gi|15240411|ref|NP_198046.1| exonuclease family protein [Arabidopsis thaliana]
gi|30690464|ref|NP_851082.1| exonuclease family protein [Arabidopsis thaliana]
gi|30690468|ref|NP_851083.1| exonuclease family protein [Arabidopsis thaliana]
gi|42573491|ref|NP_974842.1| exonuclease family protein [Arabidopsis thaliana]
gi|51968684|dbj|BAD43034.1| unknown protein [Arabidopsis thaliana]
gi|108385373|gb|ABF85778.1| At5g26940 [Arabidopsis thaliana]
gi|332006246|gb|AED93629.1| exonuclease family protein [Arabidopsis thaliana]
gi|332006247|gb|AED93630.1| exonuclease family protein [Arabidopsis thaliana]
gi|332006248|gb|AED93631.1| exonuclease family protein [Arabidopsis thaliana]
gi|332006249|gb|AED93632.1| exonuclease family protein [Arabidopsis thaliana]
Length = 316
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 160/327 (48%), Positives = 216/327 (66%), Gaps = 14/327 (4%)
Query: 6 MCFSILEVPKGRINSLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTERWSRR 65
MC SI +V + RI+S + C E H + + +S S KLL + ++ + RW RR
Sbjct: 1 MCISISQVSRLRIHSFGSSCCERVHGWIK---NSSSLKLLDVRASSVDGK----ARWIRR 53
Query: 66 RITTGTEGSKKTIQSHKLKNIKFEATSTTINVNKTEISKIQRIQHYDIEQIIAENKDLAK 125
++T T+GS+ +S L T +++ +K+Q +++Q +A++KDL+K
Sbjct: 54 NVSTTTQGSRSNTKSSVLGG----TVPVTRIIDEESRTKVQPFG--NLQQRLAQDKDLSK 107
Query: 126 LVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKR-QVPNAHVHGITTDM 184
L+T IV D+ETTG R+NERIIEIA QD+ GG STFQTLVNP + NAH+HGI DM
Sbjct: 108 LLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGIRNDM 167
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
VC+P+VPRME+LIPI L YV+SRQKPGGY++ VAHN +SFD FLINEF+RCSYE+P+NW
Sbjct: 168 VCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNW 227
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
L +D+L LARE MKS + SL+AL +YY + G AHRA++DV LS + Q+LT
Sbjct: 228 LLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLTI 287
Query: 305 DLKLSLCDLIERGFTPSDLINPKKKKK 331
DLKLSL DL+ R T SD+ K K
Sbjct: 288 DLKLSLSDLVLRCHTASDISAAMAKNK 314
>gi|21592760|gb|AAM64709.1| unknown [Arabidopsis thaliana]
Length = 316
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 160/327 (48%), Positives = 216/327 (66%), Gaps = 14/327 (4%)
Query: 6 MCFSILEVPKGRINSLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTERWSRR 65
MC SI +V + RI+S + C E H + + +S S KLL + ++ + RW RR
Sbjct: 1 MCVSISQVSRLRIHSFGSSCCERVHGWIK---NSSSLKLLDVRASSVDGK----ARWIRR 53
Query: 66 RITTGTEGSKKTIQSHKLKNIKFEATSTTINVNKTEISKIQRIQHYDIEQIIAENKDLAK 125
++T T+GS+ +S L T +++ +K+Q +++Q +A++KDL+K
Sbjct: 54 NVSTTTQGSRSNTKSSVLGG----TVPVTRIIDEESRTKVQPFG--NLQQRLAQDKDLSK 107
Query: 126 LVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKR-QVPNAHVHGITTDM 184
L+T IV D+ETTG R+NERIIEIA QD+ GG STFQTLVNP + NAH+HGI DM
Sbjct: 108 LLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGIRNDM 167
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
VC+P+VPRME+LIPI L YV+SRQKPGGY++ VAHN +SFD FLINEF+RCSYE+P+NW
Sbjct: 168 VCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNW 227
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
L +D+L LARE MKS + SL+AL +YY + G AHRA++DV LS + Q+LT
Sbjct: 228 LLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLTI 287
Query: 305 DLKLSLCDLIERGFTPSDLINPKKKKK 331
DLKLSL DL+ R T SD+ K K
Sbjct: 288 DLKLSLSDLVLRCHTASDISAAMAKNK 314
>gi|297808725|ref|XP_002872246.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp.
lyrata]
gi|297318083|gb|EFH48505.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp.
lyrata]
Length = 316
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 161/327 (49%), Positives = 215/327 (65%), Gaps = 14/327 (4%)
Query: 6 MCFSILEVPKGRINSLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTERWSRR 65
MC SI +V + RI+S + C E H + + +S S KLL + ++ + RW RR
Sbjct: 1 MCVSISQVSRFRIHSFGSSCCERVHGWIK---NSSSLKLLDVRASSVDGK----ARWIRR 53
Query: 66 RITTGTEGSKKTIQSHKLKNIKFEATSTTINVNKTEISKIQRIQHYDIEQIIAENKDLAK 125
++T T+GS+ I+S L T +++ +K+Q +++Q +A++KDL K
Sbjct: 54 NVSTTTQGSRGNIKSSVLGG----TVPLTRIIDEESRTKVQPFG--NLQQRLAQDKDLPK 107
Query: 126 LVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKR-QVPNAHVHGITTDM 184
L+T IV D+ETTG +R+ ERIIEIA QDL GG STFQTLVNP V N +HGI TDM
Sbjct: 108 LLTVIVSDLETTGLNRKRERIIEIAAQDLAGGGYSTFQTLVNPGDVPVTNTDIHGIRTDM 167
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
VC+P+VPRME+LIPI L YV+SRQKPGGY++ VAHN +SFD FLINEF+RCSYE+P+NW
Sbjct: 168 VCRPEVPRMEELIPIFLQYVESRQKPGGYVMLVAHNGKSFDFRFLINEFNRCSYEIPHNW 227
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
L +D+L L RE MKS K SL+ L+E+Y + G AHRA++DV LS + Q+LT
Sbjct: 228 LLLDSLPLGREHMKSLDPTGKPKASLKVLQEHYSLTREGDAHRALSDVLLLSKVFQKLTI 287
Query: 305 DLKLSLCDLIERGFTPSDLINPKKKKK 331
DLKLSL DL+ R T SD+I K K
Sbjct: 288 DLKLSLSDLVLRCHTASDIIAVMAKNK 314
>gi|223946833|gb|ACN27500.1| unknown [Zea mays]
gi|224030613|gb|ACN34382.1| unknown [Zea mays]
gi|414866403|tpg|DAA44960.1| TPA: DNA polymerase III subunit epsilon isoform 1 [Zea mays]
gi|414866404|tpg|DAA44961.1| TPA: DNA polymerase III subunit epsilon isoform 2 [Zea mays]
gi|414866405|tpg|DAA44962.1| TPA: DNA polymerase III subunit epsilon isoform 3 [Zea mays]
Length = 315
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 132/253 (52%), Positives = 185/253 (73%), Gaps = 5/253 (1%)
Query: 72 EGSKKTIQSHKLKNIKFEATSTTINVNK-TEISKIQRIQHYDIEQIIAENKDLAKLVTAI 130
+GSK++ + + ++ ++ ++I V K +E+ +++ + Y++E+ +E K T +
Sbjct: 60 KGSKQSFSNGR--HLHSKSVESSIEVFKQSELEQLKSLHCYNVEEEFSEVKTEWP-ATIL 116
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDV 190
VFDIETTGFSR ++RIIE A +DL+GG+NSTFQTL+NP++ V N +VHGI M+C+PDV
Sbjct: 117 VFDIETTGFSRRDDRIIEFAVRDLMGGKNSTFQTLINPEKDVKNTYVHGINNSMLCRPDV 176
Query: 191 PRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTL 250
PR ++IPILL YV SRQ G +L+VAHN RSFDVPFL+ EF RC E+P +WLF+DTL
Sbjct: 177 PRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGDWLFVDTL 236
Query: 251 TLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLKLSL 310
+A++L+ S GS L S VSL+ LRE Y IPL GSAHRAM DV LS +LQ+LTF+LKL++
Sbjct: 237 PIAKQLVDSNGSKL-SSVSLKFLRERYKIPLTGSAHRAMQDVTTLSYVLQKLTFELKLTV 295
Query: 311 CDLIERGFTPSDL 323
L+E+ F SDL
Sbjct: 296 PQLLEKSFRASDL 308
>gi|195646046|gb|ACG42491.1| DNA polymerase III subunit epsilon [Zea mays]
Length = 315
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 132/253 (52%), Positives = 185/253 (73%), Gaps = 5/253 (1%)
Query: 72 EGSKKTIQSHKLKNIKFEATSTTINVNK-TEISKIQRIQHYDIEQIIAENKDLAKLVTAI 130
+GSK++ + + ++ ++ ++I V K +E+ +++ + Y++E+ +E K T +
Sbjct: 60 KGSKQSFSNGR--HLHSKSVESSIEVFKQSELEQLKSLHCYNVEEEFSEVKTEWP-ATIL 116
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDV 190
VFDIETTGFSR ++RIIE A +DL+GG+NSTFQTL+NP++ V N +VHGI M+C+PDV
Sbjct: 117 VFDIETTGFSRRDDRIIEFAVRDLMGGKNSTFQTLINPEKDVKNTYVHGINNSMLCRPDV 176
Query: 191 PRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTL 250
PR ++IPILL YV SRQ G +L+VAHN RSFDVPFL+ EF RC E+P +WLF+DTL
Sbjct: 177 PRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGDWLFVDTL 236
Query: 251 TLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLKLSL 310
+A++L+ S GS L S VSL+ LRE Y IPL GSAHRAM DV LS +LQ+LTF+LKL++
Sbjct: 237 PIAKQLVDSNGSKL-SSVSLKFLRERYKIPLTGSAHRAMQDVTTLSYVLQKLTFELKLTV 295
Query: 311 CDLIERGFTPSDL 323
L+E+ F SDL
Sbjct: 296 PQLLEKSFRASDL 308
>gi|242041211|ref|XP_002468000.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
gi|241921854|gb|EER94998.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
Length = 583
Score = 263 bits (673), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 128/232 (55%), Positives = 172/232 (74%), Gaps = 2/232 (0%)
Query: 99 KTEISKIQRIQHYDIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE 158
++E+ +++ + Y++E+ + K T +VFDIETTGFSR +RIIE A +DL+GG+
Sbjct: 354 QSELEQLKSLHCYNVEEEFSGVKTEWP-ATILVFDIETTGFSRREDRIIEFAVRDLMGGK 412
Query: 159 NSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVA 218
NSTFQTL+NP+++V NA+VHGI+ M+C+PDVPR +L+PILL YV SRQ G +L+VA
Sbjct: 413 NSTFQTLINPEKEVRNAYVHGISNSMLCRPDVPRFGELVPILLQYVWSRQMDGKPVLWVA 472
Query: 219 HNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYG 278
HN RSFDVPFLI EF RC E+P +WLF+DTL +AR+L+ S GS L S VSL+ LRE Y
Sbjct: 473 HNGRSFDVPFLIFEFRRCKLEMPGDWLFVDTLPIARQLVDSDGSKL-SSVSLKNLRERYN 531
Query: 279 IPLVGSAHRAMADVNCLSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKK 330
IPL GSAHRAM DV L +LQ+LTF+LKL++ L+E+ F SDL + +K
Sbjct: 532 IPLTGSAHRAMQDVTTLCYVLQKLTFELKLTVPQLLEKSFQASDLPATRAEK 583
>gi|212723090|ref|NP_001131224.1| uncharacterized protein LOC100192533 [Zea mays]
gi|194690922|gb|ACF79545.1| unknown [Zea mays]
Length = 315
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 131/253 (51%), Positives = 185/253 (73%), Gaps = 5/253 (1%)
Query: 72 EGSKKTIQSHKLKNIKFEATSTTINVNK-TEISKIQRIQHYDIEQIIAENKDLAKLVTAI 130
+GSK++ + + ++ ++ ++I V K +E+ +++ + Y++E+ +E K T +
Sbjct: 60 KGSKQSFSNGR--HLHSKSVESSIEVFKQSELEQLKSLHCYNVEEEFSEVKTEWP-ATIL 116
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDV 190
VFDIETTGFSR ++RIIE A +DL+GG+N+TFQTL+NP++ V N +VHGI M+C+PDV
Sbjct: 117 VFDIETTGFSRRDDRIIEFAVRDLMGGKNNTFQTLINPEKDVKNTYVHGINNSMLCRPDV 176
Query: 191 PRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTL 250
PR ++IPILL YV SRQ G +L+VAHN RSFDVPFL+ EF RC E+P +WLF+DTL
Sbjct: 177 PRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGDWLFVDTL 236
Query: 251 TLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLKLSL 310
+A++L+ S GS L S VSL+ LRE Y IPL GSAHRAM DV LS +LQ+LTF+LKL++
Sbjct: 237 PIAKQLVDSNGSKL-SSVSLKFLRERYKIPLTGSAHRAMQDVTTLSYVLQKLTFELKLTV 295
Query: 311 CDLIERGFTPSDL 323
L+E+ F SDL
Sbjct: 296 PQLLEKSFRASDL 308
>gi|115452527|ref|NP_001049864.1| Os03g0301400 [Oryza sativa Japonica Group]
gi|108707691|gb|ABF95486.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
gi|113548335|dbj|BAF11778.1| Os03g0301400 [Oryza sativa Japonica Group]
gi|215678888|dbj|BAG95325.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 313
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 149/312 (47%), Positives = 203/312 (65%), Gaps = 10/312 (3%)
Query: 24 FCRESFHSFSRRYGHSPSFKLL-CSKTYG--LEDQDSYTERWSRRRITTGTEGSKKTIQS 80
FC +FH G S LL C Y L+++ + T S + T K++ QS
Sbjct: 7 FC-GNFHQLRNSIGSCSSTGLLKCGLIYRTVLQNRGNKTRPISTTILARSTR--KESKQS 63
Query: 81 HKL-KNIKFEATSTTINVNK-TEISKIQRIQHYDIEQIIAENKDLAKLVTAIVFDIETTG 138
K +++ E+ ++I V K +++ ++ +Q Y+I Q ++ K T +VFDIETTG
Sbjct: 64 FKTSRHLHSESVESSIEVLKQSDLEHLKSLQCYNIPQKVSGVKTDWP-ATILVFDIETTG 122
Query: 139 FSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVPRMEDLIP 198
FSR ERIIE A +DL+GG+NST QTL+NP+R++ NA+VHGI++ MVCKPD+PR + IP
Sbjct: 123 FSRRYERIIEFAVRDLMGGKNSTIQTLINPEREIKNAYVHGISSSMVCKPDIPRFREFIP 182
Query: 199 ILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMK 258
+LL YV SRQ +L+VAHN RSFDVPFL+ EF R E+P +WLF+DTL +AR+L+
Sbjct: 183 LLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGDWLFVDTLPIARQLIG 242
Query: 259 SGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLKLSLCDLIERGF 318
S G L S VSL LRE+Y IPL GSAHRAM DV L +LQ+LTF+LKL++ L+ER F
Sbjct: 243 SDGEKLKS-VSLDNLREHYKIPLAGSAHRAMQDVITLCYVLQKLTFELKLTVPQLLERSF 301
Query: 319 TPSDLINPKKKK 330
SDL P+ K
Sbjct: 302 RVSDLSIPRPGK 313
>gi|222624763|gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japonica Group]
Length = 901
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 135/258 (52%), Positives = 183/258 (70%), Gaps = 4/258 (1%)
Query: 75 KKTIQSHKL-KNIKFEATSTTINVNK-TEISKIQRIQHYDIEQIIAENKDLAKLVTAIVF 132
K++ QS K +++ E+ ++I V K +++ ++ +Q Y+I Q ++ K T +VF
Sbjct: 646 KESKQSFKTSRHLHSESVESSIEVLKQSDLEHLKSLQCYNIPQKVSGVKTDWP-ATILVF 704
Query: 133 DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVPR 192
DIETTGFSR ERIIE A +DL+GG+NST QTL+NP+R++ NA+VHGI++ MVCKPD+PR
Sbjct: 705 DIETTGFSRRYERIIEFAVRDLMGGKNSTIQTLINPEREIKNAYVHGISSSMVCKPDIPR 764
Query: 193 MEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTL 252
+ IP+LL YV SRQ +L+VAHN RSFDVPFL+ EF R E+P +WLF+DTL +
Sbjct: 765 FREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGDWLFVDTLPI 824
Query: 253 ARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLKLSLCD 312
AR+L+ S G L S VSL LRE+Y IPL GSAHRAM DV L +LQ+LTF+LKL++
Sbjct: 825 ARQLIGSDGEKLKS-VSLDNLREHYKIPLAGSAHRAMQDVITLCYVLQKLTFELKLTVPQ 883
Query: 313 LIERGFTPSDLINPKKKK 330
L+ER F SDL P+ K
Sbjct: 884 LLERSFRVSDLSIPRPGK 901
>gi|326522268|dbj|BAK07596.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 323
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 140/319 (43%), Positives = 203/319 (63%), Gaps = 14/319 (4%)
Query: 20 SLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTERWSRRRITTGT-------E 72
SL + C +FH GH S + L + + Q+ R R R + T +
Sbjct: 10 SLYSICCGNFHQLRNSIGHICSIRFLKYDSR-IISQNVPQSRRHRTRPFSATVLARSARK 68
Query: 73 GSKKTIQSHKLKNIKFEATSTTINVNK-TEISKIQRIQHYDIEQIIAENKDLAKLVTAIV 131
GSK++ +++ ++ + +I V K +++ ++ +Q YDI++ ++ K T +V
Sbjct: 69 GSKQSFSNNR--HLHGGSVEPSIEVFKQSDLQHLKSLQCYDIQEKVSGGKTDCP-ATILV 125
Query: 132 FDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVP 191
FDIETTGFSR +RIIE A +DL GG+NSTFQTL+NP+R+V NA VHGI+T+MVC D+P
Sbjct: 126 FDIETTGFSRRGDRIIEFAVRDLTGGKNSTFQTLINPEREVKNAAVHGISTNMVCSSDIP 185
Query: 192 RMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLT 251
R + IPILL YV SRQ G +++VAHN ++FDVPFLI EF RC E+P +WLF+DTL
Sbjct: 186 RFGEFIPILLQYVWSRQVAGKPVMWVAHNGKTFDVPFLIFEFQRCKQEMPGDWLFVDTLP 245
Query: 252 LARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLKLSLC 311
+A++L+ S G + S S++ L E+Y IP+ G AHRAM DV L +LQ+LTF+LKL++
Sbjct: 246 IAKQLVDSNGKKI-SSASMKNLVEHYKIPVDGKAHRAMRDVTALCYVLQKLTFELKLTVP 304
Query: 312 DLIERGFTPSDL-INPKKK 329
L+E+ F SD+ P KK
Sbjct: 305 QLLEKSFRVSDIQTTPPKK 323
>gi|357112616|ref|XP_003558104.1| PREDICTED: DNA polymerase III polC-type-like [Brachypodium
distachyon]
Length = 313
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 138/320 (43%), Positives = 204/320 (63%), Gaps = 17/320 (5%)
Query: 20 SLANFCRESFHSFSRRYGHSPSFKLLCSKT-----YGLEDQDSYTERWSRRRITTGT-EG 73
SL + C +FH GHS + L S + L+++ T +S + T +G
Sbjct: 2 SLYSICCGNFHQLWNSIGHSCRIRFLKSHSRIISETVLQNRRHKTGPFSTSILARSTRKG 61
Query: 74 SKKTIQSHKLKNIKFEATSTTINVNK-TEISKIQRIQHYDIEQIIAENKDLAKLVTAIVF 132
SK++ +++ ++ E+ ++I V K +++ ++ +Q Y+IE+ ++ K T +VF
Sbjct: 62 SKQSFSNNR--HLHGESVESSIEVFKQSDLQHLKSLQCYNIEEKVSGVKPECP-ATILVF 118
Query: 133 DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVPR 192
DIETTGFSR +RIIE A +DL GG+NSTFQTL+NP+R +PN H+HGI+T+MVC+ D+PR
Sbjct: 119 DIETTGFSRRGDRIIEFAVRDLAGGKNSTFQTLINPERVIPNTHIHGISTNMVCRSDIPR 178
Query: 193 MEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTL 252
+ IPILL YV SRQ G +L+VAHN ++FDVPFLI EF RC E+P +WLF+DTL +
Sbjct: 179 FGEFIPILLQYVLSRQMAGKPVLWVAHNGKTFDVPFLICEFQRCKMEMPGDWLFVDTLPI 238
Query: 253 ARELM--KSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLKLSL 310
AR+L+ K+ G+ +L+ L E Y IP+ G AHRAM DV L +LQ+LT +LK+++
Sbjct: 239 ARQLVDGKTKGA-----ATLKTLTERYKIPVNGDAHRAMQDVTALCYVLQKLTLELKITV 293
Query: 311 CDLIERGFTPSDLINPKKKK 330
L+E F SD+ KK
Sbjct: 294 PQLLENSFRVSDVATTPAKK 313
>gi|125549801|gb|EAY95623.1| hypothetical protein OsI_17478 [Oryza sativa Indica Group]
Length = 260
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/211 (49%), Positives = 145/211 (68%), Gaps = 4/211 (1%)
Query: 115 QIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN 174
Q+ K++A T +VFD+ETTG+ ++ RI+E A DL GG+NSTF+TLVNP+R VP+
Sbjct: 48 QVQEHGKEVAAAATILVFDLETTGYFHKDHRIVEFALCDLSGGKNSTFETLVNPERTVPD 107
Query: 175 --AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINE 232
H+ I TD+VC+P +PR D+IP+LL +V+SRQ PG +L+VAHNA+ FD FL E
Sbjct: 108 YVQHLIKIGTDLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQE 167
Query: 233 FSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
F RCS +P +WLF DTL LA++++K+ G + SL+ALRE+YGI AHRAM DV
Sbjct: 168 FDRCSAPLPADWLFFDTLLLAKKMVKAEGKK--RRTSLEALREHYGIVSHDDAHRAMRDV 225
Query: 293 NCLSLILQRLTFDLKLSLCDLIERGFTPSDL 323
LS + Q++TFDLKL+ +LI S+
Sbjct: 226 MILSQVFQKMTFDLKLTNEELINEAMKASEF 256
>gi|38344168|emb|CAE03499.2| OSJNBa0053K19.7 [Oryza sativa Japonica Group]
gi|116309750|emb|CAH66793.1| H0215F08.4 [Oryza sativa Indica Group]
gi|125591688|gb|EAZ32038.1| hypothetical protein OsJ_16216 [Oryza sativa Japonica Group]
gi|215712387|dbj|BAG94514.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 260
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/211 (49%), Positives = 145/211 (68%), Gaps = 4/211 (1%)
Query: 115 QIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN 174
Q+ K++A T +VFD+ETTG+ ++ RI+E A DL GG+NSTF+TLVNP+R VP+
Sbjct: 48 QVQEHGKEVAAAATILVFDLETTGYFHKDHRIVEFALCDLSGGKNSTFETLVNPERTVPD 107
Query: 175 --AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINE 232
H+ I TD+VC+P +PR D+IP+LL +V+SRQ PG +L+VAHNA+ FD FL E
Sbjct: 108 YVEHLIKIGTDLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQE 167
Query: 233 FSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
F RCS +P +WLF DTL LA++++K+ G + SL+ALRE+YGI AHRAM DV
Sbjct: 168 FDRCSAPLPADWLFFDTLLLAKKMVKAEGKK--RRTSLEALREHYGIVSHDDAHRAMRDV 225
Query: 293 NCLSLILQRLTFDLKLSLCDLIERGFTPSDL 323
LS + Q++TFDLKL+ +LI S+
Sbjct: 226 MILSQVFQKMTFDLKLTNEELINEAMKASEF 256
>gi|115460648|ref|NP_001053924.1| Os04g0623400 [Oryza sativa Japonica Group]
gi|113565495|dbj|BAF15838.1| Os04g0623400 [Oryza sativa Japonica Group]
Length = 282
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/202 (51%), Positives = 143/202 (70%), Gaps = 4/202 (1%)
Query: 115 QIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN 174
Q+ K++A T +VFD+ETTG+ ++ RI+E A DL GG+NSTF+TLVNP+R VP+
Sbjct: 48 QVQEHGKEVAAAATILVFDLETTGYFHKDHRIVEFALCDLSGGKNSTFETLVNPERTVPD 107
Query: 175 --AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINE 232
H+ I TD+VC+P +PR D+IP+LL +V+SRQ PG +L+VAHNA+ FD FL E
Sbjct: 108 YVEHLIKIGTDLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQE 167
Query: 233 FSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
F RCS +P +WLF DTL LA++++K+ G + SL+ALRE+YGI AHRAM DV
Sbjct: 168 FDRCSAPLPADWLFFDTLLLAKKMVKAEGKK--RRTSLEALREHYGIVSHDDAHRAMRDV 225
Query: 293 NCLSLILQRLTFDLKLSLCDLI 314
LS + Q++TFDLKL+ +LI
Sbjct: 226 MILSQVFQKMTFDLKLTNEELI 247
>gi|224123908|ref|XP_002330239.1| predicted protein [Populus trichocarpa]
gi|222871695|gb|EEF08826.1| predicted protein [Populus trichocarpa]
Length = 147
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/147 (68%), Positives = 118/147 (80%)
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MVC+PDVPRME+LIPILL YVKSRQKPGGY++FVAHNAR+FDVPFL+NEF R +E+P N
Sbjct: 1 MVCRPDVPRMEELIPILLQYVKSRQKPGGYVMFVAHNARNFDVPFLVNEFGRHHFEIPQN 60
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
WLF+DT LARE++K G + S SL+AL + Y I VG AHRAMADV LSL+LQRLT
Sbjct: 61 WLFVDTRPLAREVLKMEGLKVTSGTSLEALCKKYNIQFVGKAHRAMADVTALSLVLQRLT 120
Query: 304 FDLKLSLCDLIERGFTPSDLINPKKKK 330
FDLKL L LI + FTPS+L + KKKK
Sbjct: 121 FDLKLPLSGLIAKHFTPSELTSAKKKK 147
>gi|357511769|ref|XP_003626173.1| DNA polymerase III polC-type [Medicago truncatula]
gi|355501188|gb|AES82391.1| DNA polymerase III polC-type [Medicago truncatula]
Length = 192
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 110/194 (56%), Positives = 140/194 (72%), Gaps = 4/194 (2%)
Query: 1 MRTVPMCFSILEVPKGRINSLANFCRESFHSFSRRYGHSPSFKLLCSKTYGLEDQDSYTE 60
M+T M FS L+VP+ R++SLAN C ++FHSFS ++ S +LL S+ YGL Q + +
Sbjct: 1 MKTGSMIFSFLQVPRCRLHSLANNCGQTFHSFSNICENNSSVRLLGSRIYGL--QGGHRK 58
Query: 61 RWSRRRITTGTEGSKKTIQSHKLKNIKFE--ATSTTINVNKTEISKIQRIQHYDIEQIIA 118
+W+RR ITT TEGS T + I E +TS+T+NV KT++ + IQ+ DI Q IA
Sbjct: 59 KWTRRPITTNTEGSAGTKSRSTKQEILSETISTSSTVNVKKTQLGQFPEIQYCDIHQEIA 118
Query: 119 ENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVH 178
+NKDL+ LVT IVFDIETTGFSRENERIIEIA +DL GG NSTFQT VNP+R V N+H+H
Sbjct: 119 QNKDLSSLVTVIVFDIETTGFSRENERIIEIALRDLQGGPNSTFQTFVNPQRSVYNSHIH 178
Query: 179 GITTDMVCKPDVPR 192
GITT MV +P VPR
Sbjct: 179 GITTQMVSRPGVPR 192
>gi|242077240|ref|XP_002448556.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor]
gi|241939739|gb|EES12884.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor]
Length = 283
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 142/199 (71%), Gaps = 6/199 (3%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVP--NAHVHGITTDMV 185
T +VFD+ETTGF + RI+E A +DL GG++ TFQTL+NP+R VP + ++ ITT++V
Sbjct: 84 TFLVFDLETTGFFHVDNRIVEFALRDLSGGKDCTFQTLINPERDVPIYASELNNITTELV 143
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
C+PDVPR D++PILL YV+SRQ PG +L++AHNA+ FDVPFL EF RCS +VP++WL
Sbjct: 144 CRPDVPRFSDVLPILLAYVRSRQAPGKPVLWIAHNAKGFDVPFLNQEFDRCSAQVPSDWL 203
Query: 246 FMDTLTLARELMK-SGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
F+D+L LAR+L K G NL V+L AL E YG+ G +HRAM DV L IL ++T
Sbjct: 204 FVDSLRLARKLKKIDGKKNL---VNLVALGERYGLSSEGPSHRAMPDVEALCNILPKITL 260
Query: 305 DLKLSLCDLIERGFTPSDL 323
DLKL+ DL+ SD+
Sbjct: 261 DLKLTCDDLMNEAMRFSDV 279
>gi|357162123|ref|XP_003579312.1| PREDICTED: DNA polymerase III polC-type-like [Brachypodium
distachyon]
Length = 265
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/192 (50%), Positives = 134/192 (69%), Gaps = 6/192 (3%)
Query: 124 AKLVTAIVFDIETTGF--SRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHG 179
+ T +VFDIETTGF N RI+E+A +DL GG+NSTF+TL+NP+ +P VH
Sbjct: 56 GQCATILVFDIETTGFLDKSNNNRIVELALRDLSGGKNSTFETLINPEMDIPTFVEKVHK 115
Query: 180 ITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
I+T MV + D+PR D++P+LL +V+SRQ PG +++VAH A++FD PFL EF RCS +
Sbjct: 116 ISTKMVRRHDIPRFGDVLPLLLAFVQSRQTPGKPVIWVAHRAKAFDAPFLAREFDRCSVQ 175
Query: 240 VPNNWLFMDTLTLAREL--MKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSL 297
+P +WLF+D++ LAR+L M V+L+ALR++YGI + GSAHRAM DV L
Sbjct: 176 MPTDWLFVDSVCLARKLPNMPKSSDGKKHLVNLEALRKHYGIRMEGSAHRAMQDVTTLCQ 235
Query: 298 ILQRLTFDLKLS 309
+ Q++TFDL LS
Sbjct: 236 VFQKITFDLNLS 247
>gi|302799380|ref|XP_002981449.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
gi|300150989|gb|EFJ17637.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
Length = 1254
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/207 (44%), Positives = 127/207 (61%), Gaps = 3/207 (1%)
Query: 124 AKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGIT 181
A +T IVFD+ETTGF +RIIE A +DL GG+ ST LVNP R VP V GIT
Sbjct: 172 APKMTIIVFDLETTGFRAAGDRIIEFAARDLAGGDRSTISALVNPGRTVPYLITAVTGIT 231
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
MV KP VP +++ P ++ +V+SR+K ++ VAHN + FDVPFL+ EF C +VP
Sbjct: 232 NQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSCGIQVP 291
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
WLF+D++ LARE K G N S + L L E YG+ AHRAMADVN L+ +L+
Sbjct: 292 EWWLFLDSMPLARETKKKFGYNWRS-LKLSVLHEAYGLHSTERAHRAMADVNMLASVLEA 350
Query: 302 LTFDLKLSLCDLIERGFTPSDLINPKK 328
+ +L+L + +E+ FT ++ K
Sbjct: 351 IVSELQLPASEFLEKAFTADEVYASSK 377
>gi|302773125|ref|XP_002969980.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
gi|300162491|gb|EFJ29104.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
Length = 1208
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/207 (44%), Positives = 126/207 (60%), Gaps = 3/207 (1%)
Query: 124 AKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGIT 181
A +T IVFD+ETTGF +RIIE A +DL GG+ ST LVNP R VP V GIT
Sbjct: 172 APKMTIIVFDLETTGFRAAGDRIIEFAARDLAGGDRSTISALVNPGRTVPYLITAVTGIT 231
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
MV KP VP +++ P ++ +V+SR+K ++ VAHN + FDVPFL+ EF C +VP
Sbjct: 232 NQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSCGIQVP 291
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
WLF+D++ LARE K G N S + L L E YG+ AHRAMADVN L+ +L+
Sbjct: 292 EWWLFLDSMPLAREAKKKFGYNWRS-LKLSVLHEAYGLHSTERAHRAMADVNMLASVLEA 350
Query: 302 LTFDLKLSLCDLIERGFTPSDLINPKK 328
+ +L+L +E+ FT ++ K
Sbjct: 351 IVSELQLPASVFLEKAFTADEVYASSK 377
>gi|218192641|gb|EEC75068.1| hypothetical protein OsI_11194 [Oryza sativa Indica Group]
Length = 146
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/147 (58%), Positives = 105/147 (71%), Gaps = 1/147 (0%)
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MVCKPD+PR + IPILL YV SRQ +L+VAHN RSFDVPFL+ EF R E+P +
Sbjct: 1 MVCKPDIPRFREFIPILLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGD 60
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
WLF+DTL +AR+L+ S G L S VSL LRE+Y IPL GSAHRAM DV L +LQ+LT
Sbjct: 61 WLFVDTLPIARQLIDSDGEKLKS-VSLDNLREHYKIPLAGSAHRAMQDVITLCYVLQKLT 119
Query: 304 FDLKLSLCDLIERGFTPSDLINPKKKK 330
F+LKL++ L+ER F SDL P+ K
Sbjct: 120 FELKLTVPQLLERSFRVSDLSTPRPGK 146
>gi|167999243|ref|XP_001752327.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696722|gb|EDQ83060.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1960
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 128/199 (64%), Gaps = 8/199 (4%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAH--VHGITTDMV 185
T IVFDIETTGF + +I+E+A +D+ GG+ ST +TLVNP + VP A VH IT++MV
Sbjct: 250 TIIVFDIETTGFLKPGSKIVELACRDIAGGDCSTLETLVNPYQPVPIASTAVHKITSEMV 309
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
+ D+P +++ + +V+SR+ ++ VAHN R FDVPF++ E CS E+P++W
Sbjct: 310 NRDDIPSWTEVMTAFVDFVESRRIGNSDVILVAHNGRRFDVPFIMKECYECSMEIPSHWY 369
Query: 246 FMDTLTLARELMKS--GGSNLPSKVSLQAL-REYYGIPLVGSAHRAMADVNCLSLILQRL 302
F+DT+ LA+ ++K G + L +LQ L + Y +P + AHRA DV+ L+ + +L
Sbjct: 370 FIDTIDLAKAMLKKRFGKTKL---YNLQFLYYDCYKLPRLEDAHRAGVDVDMLASVFGKL 426
Query: 303 TFDLKLSLCDLIERGFTPS 321
+L++ + +L+++ F S
Sbjct: 427 LMELEMPVSELLDQAFKAS 445
>gi|412990669|emb|CCO18041.1| ATP-dependent DNA helicase RecG [Bathycoccus prasinos]
Length = 1412
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 117/217 (53%), Gaps = 28/217 (12%)
Query: 114 EQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDL--------LGGENS---TF 162
+Q I E+ K+ T IVFD+ETTG S+E +RI+EIA DL + G+ + F
Sbjct: 283 KQPIVEDVKDKKMPTVIVFDLETTGLSKERDRIVEIACVDLSDVTSAASVAGDGTDIKNF 342
Query: 163 QTLVNPKRQVPNAHVH---GITTDMVCKPDVPRME---DLIPILLHYVKSRQKPGG---- 212
QTLVNP R +HV GIT MV PD+P + + + + + K G
Sbjct: 343 QTLVNPGRFSIPSHVQKLTGITNAMVSAPDIPSFQMAAERFEAFIEAARLKNKESGDGAY 402
Query: 213 --YILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSL 270
+L AHNAR FD FL E+ R E+P++W F+DTL L+R ++K G+ +K +L
Sbjct: 403 SGEVLLAAHNARQFDSSFLQREYWRLGREMPSHWRFLDTLPLSRSVLKKSGN---TKFTL 459
Query: 271 QALREYYGIPLVGS--AHRAMADVNCLSLILQRLTFD 305
ALRE+Y I + HRA DV LS I+ +L D
Sbjct: 460 DALREHYEITINEGDMMHRAFTDVKVLSRIIHQLLAD 496
>gi|308807965|ref|XP_003081293.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
gi|116059755|emb|CAL55462.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
Length = 1259
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 104/182 (57%), Gaps = 14/182 (7%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKR-QVPNA--HVHGITTDMVC 186
IVFD+ETTG S+E RIIE+A Q L ++ F TLVNP R +P A + GIT MV
Sbjct: 196 IVFDLETTGLSKEKSRIIELAAQSLTD-PSAAFSTLVNPGRFNIPPAIKALTGITNSMVS 254
Query: 187 KPDVPRME---DLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
PDVP + + + V+ + +PG +L VAHNAR FD F+ E+ R E+P++
Sbjct: 255 APDVPSFAMAAEQFEMFIEQVR-QSRPGAPVLLVAHNARQFDAAFIQYEYRRLGRELPSS 313
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGS---AHRAMADVNCLSLILQ 300
W F DTL LAR+L++ G K S+ LR +Y I L G HRA D L+ IL
Sbjct: 314 WRFCDTLPLARQLLRPDGLG---KFSMDVLRGHYDIELEGGDVQMHRAGTDARVLADILN 370
Query: 301 RL 302
++
Sbjct: 371 KM 372
>gi|384253013|gb|EIE26488.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 1115
Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats.
Identities = 75/204 (36%), Positives = 111/204 (54%), Gaps = 14/204 (6%)
Query: 129 AIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNP-KRQVPNAHVHGITTDMVCK 187
IVFD+ETTGF + RI+EIA ++ QTLVN VPN+ +HGITT+MV
Sbjct: 277 GIVFDLETTGFPSKKSRILEIAALEM--DSQKGMQTLVNIFPHTVPNSEIHGITTEMVHD 334
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYI-LFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P +P + + + ++ S + + +AHN R FD+PFL EF+R +++P NW F
Sbjct: 335 PSLPTSREAVQQFMDFIDSHCASEDTVPVLIAHNGRRFDIPFLAMEFAREGFKIPANWHF 394
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV-----NCLSLILQR 301
MDTL +A++++ N+ S + L +RE++GI HRA DV ++L +
Sbjct: 395 MDTLMVAQKVIDR--DNIQS-LKLTDMREHFGISAPSVEHRAWQDVEHWRFKAIALFYRD 451
Query: 302 LTFDLKLSLCDLIERGFTPSDLIN 325
L SL DL+ F P IN
Sbjct: 452 LEKSGFESLGDLLY--FFPRSYIN 473
>gi|255070749|ref|XP_002507456.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
gi|226522731|gb|ACO68714.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
Length = 1473
Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/183 (39%), Positives = 102/183 (55%), Gaps = 15/183 (8%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQV---PNAHVHGITTDMVC 186
+VFD+ETTG +++ RIIEIA ++ + TLVNP R P + GIT MV
Sbjct: 296 VVFDLETTGLNKDRNRIIEIAAVNVSDPTHQPMSTLVNPGRFAVPPPVVALTGITNAMVS 355
Query: 187 KPDVPRMEDLIPILLHYV-KSRQKPGG-YILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
P VP + + Y+ ++R++ GG +L AHNAR FD FL E+ R E+P +W
Sbjct: 356 APAVPSFQRAAELFQEYIDEARRRCGGASVLLAAHNARQFDAGFLQAEYRRLGRELPEDW 415
Query: 245 LFMDTLTLARELMKS----GGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLIL 299
F+DTL LAR+ + GGS L++L ++G+ G SAHRA AD L +L
Sbjct: 416 RFVDTLPLARKTLAKEAVPGGS-----YKLESLAAHFGVDTAGASAHRAEADARMLGDVL 470
Query: 300 QRL 302
QRL
Sbjct: 471 QRL 473
>gi|303271977|ref|XP_003055350.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
gi|226463324|gb|EEH60602.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
Length = 1468
Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats.
Identities = 70/186 (37%), Positives = 101/186 (54%), Gaps = 12/186 (6%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVH---GITTDMVC 186
IVFD+ETTG ++ +RIIEIA DL ++ TLVNP R + GIT MV
Sbjct: 308 IVFDLETTGLAKLKDRIIEIAAYDLNDKTHAPMSTLVNPGRTYLTGQITRLTGITNAMVS 367
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGG--YILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
P VP +L +V ++ GG ++ AHNAR FD FL E+ R E P++W
Sbjct: 368 NPGVPSFVRAAELLEEFVDEARRRGGGASVILAAHNARQFDAGFLKAEYDRIQREFPDDW 427
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGI-PLVG-SAHRAMADVNCLSLILQRL 302
F+DTL +AR+L+ + + ++AL Y + P+ G +AHRA AD L I++ +
Sbjct: 428 RFVDTLPIARKLVPK--TEVFGSHKMEALATRYDVKPVDGETAHRAGADARVLGEIVEAM 485
Query: 303 ---TFD 305
+FD
Sbjct: 486 LGVSFD 491
>gi|297620852|ref|YP_003708989.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU
86-1044]
gi|297376153|gb|ADI37983.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU
86-1044]
gi|337293888|emb|CCB91876.1| DNA polymerase III, epsilon chain [Waddlia chondrophila 2032/99]
Length = 231
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 99/182 (54%), Gaps = 19/182 (10%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
I +D ETTG E++RI+EIA D + G + + LVNP +P + VH IT DMV
Sbjct: 6 IFYDTETTGIKAEHDRIVEIAAYDPISG--CSLEELVNPGIPIPKEASKVHHITDDMV-- 61
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P +++ + + G ++ +AHN +FDV FL +EF R + E+P W F
Sbjct: 62 KDAPTFKEVGQKFIEFC------SGDVILIAHNNDNFDVHFLRHEFKRHALEMP-EWRFF 114
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLK 307
DTL AR +LP + +LQ LRE Y I +AHRA+ DV L + ++++ DL
Sbjct: 115 DTLKWARRYR----PDLP-RHALQFLREIYSIE-ANNAHRALDDVIVLHKVFEKMSDDLD 168
Query: 308 LS 309
+
Sbjct: 169 IE 170
>gi|338732703|ref|YP_004671176.1| hypothetical protein SNE_A08080 [Simkania negevensis Z]
gi|336482086|emb|CCB88685.1| putative uncharacterized protein [Simkania negevensis Z]
Length = 232
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 96/182 (52%), Gaps = 19/182 (10%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
I +D ETTG + +RIIEIA D N TF+ L+NP+ +P VH IT +MV
Sbjct: 6 IFYDTETTGVKPDKDRIIEIAAFD--PELNRTFEALINPEIPIPEEATAVHNITNEMVK- 62
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P + + + G ++ +AHN +FD+PF+ +EF R +P W ++
Sbjct: 63 -DAPTFKQVGVDFASFC------SGEVVLIAHNNDAFDLPFIRSEFERNELTLP-KWPYI 114
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLK 307
D+L +R+ +LP + SLQ LREY+G P +AHRA+ DV L + + DL
Sbjct: 115 DSLKFSRKYR----PDLP-RHSLQHLREYHGFP-ANNAHRALDDVIVLHQVFSEMIDDLT 168
Query: 308 LS 309
+
Sbjct: 169 MD 170
>gi|282890058|ref|ZP_06298591.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338174978|ref|YP_004651788.1| DNA polymerase III subunit epsilon [Parachlamydia acanthamoebae
UV-7]
gi|281500064|gb|EFB42350.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336479336|emb|CCB85934.1| DNA polymerase III subunit epsilon [Parachlamydia acanthamoebae
UV-7]
Length = 231
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 98/185 (52%), Gaps = 19/185 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVP--NAHVHGITTDM 184
+ A+ +D ETTG + + +IE+A D +G N TF+ L+NP +P +H IT +M
Sbjct: 1 MKALYYDTETTGIKADRDYVIELAVYDPVG--NRTFERLINPGVPIPPEATAIHHITDEM 58
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V + P ++I + G ++ +AHN FD+ FL NEF R + E+P W
Sbjct: 59 VA--NAPSFGEIIEEFKEFCS------GDVVLIAHNNDQFDIHFLRNEFKRSNQELP-PW 109
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
F+DTL AR ++LP + +LQ LR YGI +AHRA+ DV L + +
Sbjct: 110 KFLDTLKWARRYR----NDLP-RHTLQFLRGIYGI-AENNAHRALDDVIVLHQVFSAMLD 163
Query: 305 DLKLS 309
DL ++
Sbjct: 164 DLSIA 168
>gi|330444392|ref|YP_004377378.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58]
gi|328807502|gb|AEB41675.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58]
Length = 232
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 101/211 (47%), Gaps = 22/211 (10%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVP--NAHVHGITTDMVCK 187
I +D ETTG + +R+IEIA + +F T VNP+ VP ++ +HGITT MV
Sbjct: 5 IFYDTETTGTQIDKDRVIEIAAYN--SSTKESFVTYVNPEIPVPEDSSKIHGITTAMVSS 62
Query: 188 -PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P P Y +Q G + VAHN +FD+P L E R S E P N
Sbjct: 63 APTFPEA---------YHNFKQFCGSASILVAHNNDNFDLPLLQKECQRYSLE-PLNLRT 112
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+D+L A++ +LP K +LQ LR+ YG AHRA+ DV L + L DL
Sbjct: 113 IDSLKWAKKYR----PDLP-KHNLQYLRQVYGF-AENQAHRALDDVITLHKVFSALVGDL 166
Query: 307 KL-SLCDLIERGFTPSDLINPKKKKKSKLVS 336
+ L+E F P P K K K +S
Sbjct: 167 TPEQILALLEESFHPRVFKMPFGKYKGKTLS 197
>gi|379708059|ref|YP_005263264.1| DNA-directed DNA polymerase [Nocardia cyriacigeorgica GUH-2]
gi|374845558|emb|CCF62624.1| DNA-directed DNA polymerase [Nocardia cyriacigeorgica GUH-2]
Length = 583
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 107/212 (50%), Gaps = 25/212 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNA--HVHGITTDM 184
T +V D+ETTG S E++ I EI + GGE F TLV+P R +P A HV GITT M
Sbjct: 27 TFVVVDLETTGTSPESDAITEIGAVKVRGGEVLGEFATLVDPGRAIPPAVVHVTGITTAM 86
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
VC P +E ++P L + G +L VAHNAR FD+ FL +RC P
Sbjct: 87 VCA--APPIEAVLPGFLEFAA------GAVL-VAHNAR-FDMAFLRAAAARCGTPWPAAQ 136
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQ 300
+ T+ LAR ++ PS V L L G HRA+AD V+ L ++
Sbjct: 137 VVC-TVRLARRVLAR--DEAPS-VRLSVLARVLGAS-TQPTHRALADARATVDVLHALMA 191
Query: 301 RLTFDLKLSLCDLIERGFTPSDLINPKKKKKS 332
R+ SL +LI+ + P D+ + ++ K+
Sbjct: 192 RVGNQGVHSLTELID--YLP-DVSSGQRAKRG 220
>gi|404259950|ref|ZP_10963252.1| DNA polymerase III subunit epsilon [Gordonia namibiensis NBRC
108229]
gi|403401533|dbj|GAC01662.1| DNA polymerase III subunit epsilon [Gordonia namibiensis NBRC
108229]
Length = 621
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 101/198 (51%), Gaps = 19/198 (9%)
Query: 109 QHYDIEQIIAENKDLAKL-VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLV 166
Q D + I +E D A T +V D+ETTG S ++RI EI + GGE F TLV
Sbjct: 29 QATDGDAISSEFSDRALFDTTLVVVDLETTGSSPTDDRITEIGAVKIRGGEVIGEFATLV 88
Query: 167 NPKRQVPNAHV--HGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSF 224
+P R +P V GITT MV D PR+E ++P L + + G IL VAHNAR F
Sbjct: 89 DPGRAIPPQIVTLTGITTAMVT--DAPRIESVLPAFLEFAR------GSIL-VAHNAR-F 138
Query: 225 DVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGS 284
D+ FL R + P + L + T+T+AR ++ P+ V L AL E + + V
Sbjct: 139 DMGFLRQNALRLHLDWPFS-LSLCTVTMARRILPR--DEAPT-VKLSALAELFDVS-VRP 193
Query: 285 AHRAMADVNCLSLILQRL 302
HRA+ D + RL
Sbjct: 194 THRALDDARATVEVFHRL 211
>gi|452962113|gb|EME67403.1| hypothetical protein G352_00212 [Rhodococcus ruber BKS 20-38]
Length = 581
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 108/215 (50%), Gaps = 26/215 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D+ETTG S ++ I EI + GGE F TLV+P R +P + GITT MVC
Sbjct: 18 VVVDLETTGGSSTDDAITEIGAVKIRGGEVLGEFATLVDPGRSIPPNIVQLTGITTAMVC 77
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
PR+E ++P L + G +L VAHNA FDV FL SR P +
Sbjct: 78 S--APRIEQVLPSFLEFA------AGAVL-VAHNA-GFDVGFLRAAASRTEVAWP-RFTV 126
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQRL 302
+ T+ LAR ++ G N V L AL E + + + HRA+ D V+ L +++R+
Sbjct: 127 LCTVKLARRVL---GRNEAPSVRLSALAELFRVSTTPT-HRALDDARATVDVLHALIERV 182
Query: 303 TFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
SL +L R + P+ + +++ K L ++
Sbjct: 183 GNQGVHSLTEL--RDYLPA--VTAEQRAKRSLAAH 213
>gi|51849608|dbj|BAD42331.1| DNA helicase RecG [Nannochloris bacillaris]
Length = 1341
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 101/224 (45%), Gaps = 17/224 (7%)
Query: 92 STTINVNKTEIS--KIQRIQHYD-IEQIIAEN---KDLAKLVTAIVFDIETTGFSRENER 145
S TI + EI + ++QH +EQ E+ A IVFD+ETTG S+E +
Sbjct: 93 SATIPPKQVEIEPLTVWKMQHTTWLEQESTESFTPPSAATRWVPIVFDLETTGLSKEKDH 152
Query: 146 IIEIAFQDLLGGENSTFQTLVNPKRQVP----NAHVHGITTDMVCKPDVPRMEDLIPILL 201
+EIA + L G TF TL+ + V GITT P +P L
Sbjct: 153 PVEIAAEAPLSGR--TFSTLIRLADGMSISTKAEEVTGITTAQCKDPSLPTFPQAYASFL 210
Query: 202 HYVKSRQK---PGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMK 258
++++ + PG + L V HN FD+P L++ R P + +DTL+ +R L+
Sbjct: 211 RFIEAEMEDAAPGAFPLLVGHNIERFDLPLLLHCAKRFDVAAPLSARILDTLSASRSLLT 270
Query: 259 SGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
GS P +L L + +AHRA ADV +L L
Sbjct: 271 --GSAKPEAFNLTTLYGHLTRKEAIAAHRASADVKMTVAVLHAL 312
>gi|226323840|ref|ZP_03799358.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
gi|225207389|gb|EEG89743.1| DNA polymerase III, alpha subunit, Gram-positive type [Coprococcus
comes ATCC 27758]
Length = 1535
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 117 IAENKDLAKLV-TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN 174
IAEN+ L T +VFDIETTGFS +RIIEI + G+ F T VNPKR +P
Sbjct: 476 IAENEKGQDLEGTYVVFDIETTGFSAVTDRIIEIGAVKVEDGKITDKFSTFVNPKRPIPF 535
Query: 175 --AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINE 232
+ IT +MV D P +E ++P + ++ G + VAHNA SFDV F+
Sbjct: 536 RITELTSITDEMVI--DSPDIETILPQFIEFI-------GDAVLVAHNA-SFDVGFIEQN 585
Query: 233 FSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
R E ++ ++DT+ LAR L+ + ++ L + + I L + HRA+ D
Sbjct: 586 CKRQKIEA--DFTYVDTVALARVLLPA-----LNRFKLDTVAKALNISL-ENHHRAVDDA 637
Query: 293 NCLSLILQRLTFDLK 307
C + I + LK
Sbjct: 638 GCTAEIFVKFVQMLK 652
>gi|15604982|ref|NP_219766.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
D/UW-3/CX]
gi|76788983|ref|YP_328069.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13]
gi|166154472|ref|YP_001654590.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu]
gi|166155347|ref|YP_001653602.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|237802684|ref|YP_002887878.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
B/Jali20/OT]
gi|237804606|ref|YP_002888760.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255311062|ref|ZP_05353632.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276]
gi|255317363|ref|ZP_05358609.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s]
gi|255348621|ref|ZP_05380628.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70]
gi|255503161|ref|ZP_05381551.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s]
gi|255506839|ref|ZP_05382478.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923]
gi|301335732|ref|ZP_07223976.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1]
gi|339625921|ref|YP_004717400.1| exonuclease, DNA polymerase III subunit epsilon family
domain-containing protein [Chlamydia trachomatis L2c]
gi|376282265|ref|YP_005156091.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A2497]
gi|385239772|ref|YP_005807614.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768]
gi|385240694|ref|YP_005808535.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222]
gi|385241627|ref|YP_005809467.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023]
gi|385242548|ref|YP_005810387.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301]
gi|385243468|ref|YP_005811314.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D-EC]
gi|385244348|ref|YP_005812192.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D-LC]
gi|385245234|ref|YP_005814057.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150]
gi|385246158|ref|YP_005814980.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074]
gi|385269936|ref|YP_005813096.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A2497]
gi|386262612|ref|YP_005815891.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis Sweden2]
gi|389857951|ref|YP_006360193.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis F/SW4]
gi|389858827|ref|YP_006361068.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/SW3]
gi|389859703|ref|YP_006361943.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis F/SW5]
gi|3328673|gb|AAC67854.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX]
gi|76167513|gb|AAX50521.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13]
gi|165930460|emb|CAP03953.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu]
gi|165931335|emb|CAP06907.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|231272906|emb|CAX09817.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231273918|emb|CAX10710.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
B/Jali20/OT]
gi|289525300|emb|CBJ14776.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2]
gi|296434850|gb|ADH17028.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150]
gi|296435777|gb|ADH17951.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768]
gi|296436702|gb|ADH18872.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222]
gi|296437637|gb|ADH19798.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074]
gi|296438570|gb|ADH20723.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023]
gi|297140136|gb|ADH96894.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301]
gi|297748391|gb|ADI50937.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-EC]
gi|297749271|gb|ADI51949.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-LC]
gi|339460569|gb|AEJ77072.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia trachomatis L2c]
gi|347975076|gb|AEP35097.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A2497]
gi|371908295|emb|CAX08923.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A2497]
gi|380249023|emb|CCE14314.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis F/SW5]
gi|380249898|emb|CCE13425.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis F/SW4]
gi|380250776|emb|CCE12536.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis E/SW3]
gi|438690184|emb|CCP49441.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/7249]
gi|438691268|emb|CCP48542.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/5291]
gi|438692641|emb|CCP47643.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/363]
gi|440525174|emb|CCP50425.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
K/SotonK1]
gi|440526062|emb|CCP51546.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/8200/07]
gi|440526957|emb|CCP52441.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
D/SotonD1]
gi|440527850|emb|CCP53334.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
D/SotonD5]
gi|440528741|emb|CCP54225.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
D/SotonD6]
gi|440529631|emb|CCP55115.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
E/SotonE4]
gi|440530530|emb|CCP56014.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
E/SotonE8]
gi|440531422|emb|CCP56932.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
F/SotonF3]
gi|440532314|emb|CCP57824.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
G/SotonG1]
gi|440533208|emb|CCP58718.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
Ia/SotonIa1]
gi|440534102|emb|CCP59612.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
Ia/SotonIa3]
gi|440534997|emb|CCP60507.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/Bour]
gi|440535887|emb|CCP61400.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/795]
gi|440536778|emb|CCP62292.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L1/440/LN]
gi|440537669|emb|CCP63183.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L1/1322/p2]
gi|440538559|emb|CCP64073.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L1/115]
gi|440539447|emb|CCP64961.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L1/224]
gi|440540338|emb|CCP65852.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2/25667R]
gi|440541227|emb|CCP66741.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L3/404/LN]
gi|440542115|emb|CCP67629.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/UCH-2]
gi|440543006|emb|CCP68520.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/Canada2]
gi|440543897|emb|CCP69411.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/LST]
gi|440544787|emb|CCP70301.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/Ams1]
gi|440545677|emb|CCP71191.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/CV204]
gi|440913939|emb|CCP90356.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/Ams2]
gi|440914829|emb|CCP91246.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/Ams3]
gi|440915721|emb|CCP92138.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/Canada1]
gi|440916615|emb|CCP93032.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/Ams4]
gi|440917505|emb|CCP93922.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/Ams5]
Length = 232
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 99/210 (47%), Gaps = 20/210 (9%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
I +D ETTG + +RI+E+A + G + +FQTLVNP+ +P +HGITT V
Sbjct: 5 IFYDTETTGTQIDKDRIVELAAYN--GTTSESFQTLVNPEIPIPAEATKIHGITTAEVA- 61
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D PR + + + G + VAHN +FD P L+ E R P +
Sbjct: 62 -DAPRFPEAYQKFIEFC------GTDNILVAHNNNAFDYPLLVRECRRHGLSEP-QLRTI 113
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLK 307
D+L A++ ++LP SLQ LR+ YG AHRA+ DV L + L DL
Sbjct: 114 DSLKWAKKYR----TDLPQH-SLQYLRQVYGFE-ENQAHRALDDVITLYRVFSALVGDLS 167
Query: 308 LS-LCDLIERGFTPSDLINPKKKKKSKLVS 336
+ DL+ P P K K K +S
Sbjct: 168 PDQIYDLLNETCHPRIFKMPFGKYKGKPLS 197
>gi|336435156|ref|ZP_08614873.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lachnospiraceae bacterium 1_4_56FAA]
gi|336001547|gb|EGN31683.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lachnospiraceae bacterium 1_4_56FAA]
Length = 1525
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 95/184 (51%), Gaps = 23/184 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +VFD+ETTGFS +RIIEI + GE +F T VNPKR +P + IT +M
Sbjct: 487 TYVVFDLETTGFSAIKDRIIEIGAVKVQNGEIVDSFSTFVNPKRPIPFEITQLTSITDEM 546
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY-EVPNN 243
V D P +E ++P L +V G + VAHNA FDV F+ C Y ++ N
Sbjct: 547 VM--DSPDIETILPQFLEFV-------GDAVLVAHNA-GFDVGFIEQ---NCRYQDIELN 593
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
++++DT+ LAR L+ + SK L + + I L + HRA+ D + I +
Sbjct: 594 FVYVDTVALARVLLPT-----LSKYKLNIVAKALDISL-ENHHRAVDDAGATAEIFVKFV 647
Query: 304 FDLK 307
LK
Sbjct: 648 QMLK 651
>gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 595
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 86/181 (47%), Gaps = 15/181 (8%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D+ETTG S RI E+ + GGE F TLVNP +P + GIT MV
Sbjct: 27 VVLDLETTGTSASGSRITEVGAVRVRGGEVVGEFATLVNPGTPIPANITLLTGITQSMVA 86
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P ME+++P LL ++ + + VAHNA FD FL R + P +
Sbjct: 87 --SAPPMEEVLPRLLAFLDAEPD----TVLVAHNA-PFDTGFLKAACERHGTDWP-GYPV 138
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+DTL LAR ++ G + L L Y+G+P V HRA+ D +L L L
Sbjct: 139 VDTLRLARAVLARGETR---NHRLATLAAYFGVP-VAPNHRALEDARATVGVLHGLVERL 194
Query: 307 K 307
+
Sbjct: 195 R 195
>gi|15618325|ref|NP_224610.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
CWL029]
gi|15835943|ref|NP_300467.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138]
gi|16752629|ref|NP_444893.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39]
gi|384449330|ref|YP_005661932.1| DNA polymerase III subunit epsilon family exonuclease
[Chlamydophila pneumoniae LPCoLN]
gi|4376690|gb|AAD18554.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029]
gi|8163413|gb|AAF73657.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila
pneumoniae AR39]
gi|8978782|dbj|BAA98618.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138]
gi|269303286|gb|ACZ33386.1| exonuclease, DNA polymerase III, epsilon subunit family
[Chlamydophila pneumoniae LPCoLN]
Length = 237
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 100/208 (48%), Gaps = 22/208 (10%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMV-C 186
I +D ETTG E +RIIEIA + + E +F T VNP+ +P+ + +HGITTD V
Sbjct: 10 IFYDTETTGTQIERDRIIEIAAYNSVTDE--SFLTYVNPEIPIPDEASKIHGITTDAVLS 67
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P P Y R+ G + VAHN FD P L E R S E N
Sbjct: 68 APKFPEA---------YEGFRKFCGEDSILVAHNNDGFDFPLLGKECRRHSLEPLTNRT- 117
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+D+L A++ +LP K +LQ LR+ YG AHRA+ DV L + L DL
Sbjct: 118 IDSLKWAQKYR----PDLP-KHNLQYLRQVYGF-AENQAHRALDDVVILHKVFTSLIGDL 171
Query: 307 -KLSLCDLIERGFTPSDLINPKKKKKSK 333
+ DL+++ + P P K K +
Sbjct: 172 PPQQVLDLLQQSYHPKVFKMPFGKYKGQ 199
>gi|89898431|ref|YP_515541.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56]
gi|89331803|dbj|BAE81396.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56]
Length = 228
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 100/212 (47%), Gaps = 23/212 (10%)
Query: 127 VTAIVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTD 183
+TA++F D ETTG + +RIIEIA + + E +F T VNPK +P + +HGITT
Sbjct: 1 MTALIFYDTETTGTQIDKDRIIEIAAFNNVTKE--SFVTYVNPKIPIPEEASKIHGITTS 58
Query: 184 MVCK-PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
V PD P Y + R G + VAHN FD P L E R S E P
Sbjct: 59 TVASAPDFPEA---------YKQFRDFCGNEAVLVAHNNDGFDFPLLEKECRRHSLE-PL 108
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+D+L A++ +LP K +LQ LR+ YG AHRA+ DV L + L
Sbjct: 109 TLRTIDSLKWAQKYR----PDLP-KHNLQYLRQVYGF-AENQAHRALDDVITLHDVFSAL 162
Query: 303 TFDLKL-SLCDLIERGFTPSDLINPKKKKKSK 333
DL + L+E P P K K K
Sbjct: 163 IGDLSAEQVLALMEESCHPKTFKMPFGKYKGK 194
>gi|343924173|ref|ZP_08763736.1| DNA polymerase III epsilon subunit [Gordonia alkanivorans NBRC
16433]
gi|343765978|dbj|GAA10662.1| DNA polymerase III epsilon subunit [Gordonia alkanivorans NBRC
16433]
Length = 621
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 92/178 (51%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHV--HGITTDM 184
T +V D+ETTG + +RI EI + GGE F TLV+P R +P V GITT M
Sbjct: 49 TLVVVDLETTGSNPAGDRITEIGAVKIRGGEVIGEFATLVDPGRPIPPQIVTLTGITTAM 108
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D PR+E ++P L + + G IL VAHNAR FD+ FL R + P +
Sbjct: 109 VT--DAPRIESVLPSFLEFAR------GAIL-VAHNAR-FDMGFLRQNALRLHLDWPFS- 157
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
L + T+T+AR ++ P+ V L AL E + + V HRA+ D + RL
Sbjct: 158 LSLCTVTMARRILPR--DEAPT-VKLSALAELFDVS-VRPTHRALDDARATVEVFHRL 211
>gi|33241759|ref|NP_876700.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
TW-183]
gi|33236268|gb|AAP98357.1| DNA-directed DNA polymerase III alpha chain [Chlamydophila
pneumoniae TW-183]
Length = 232
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 100/208 (48%), Gaps = 22/208 (10%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMV-C 186
I +D ETTG E +RIIEIA + + E +F T VNP+ +P+ + +HGITTD V
Sbjct: 5 IFYDTETTGTQIERDRIIEIAAYNSVTDE--SFLTYVNPEIPIPDEASKIHGITTDAVLS 62
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P P Y R+ G + VAHN FD P L E R S E N
Sbjct: 63 APKFPEA---------YEGFRKFCGEDSILVAHNNDGFDFPLLGKECRRHSLEPLTNRT- 112
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+D+L A++ +LP K +LQ LR+ YG AHRA+ DV L + L DL
Sbjct: 113 IDSLKWAQKYR----PDLP-KHNLQYLRQVYGF-AENQAHRALDDVVILHKVFTSLIGDL 166
Query: 307 -KLSLCDLIERGFTPSDLINPKKKKKSK 333
+ DL+++ + P P K K +
Sbjct: 167 PPQQVLDLLQQSYHPKVFKMPFGKYKGQ 194
>gi|453380894|dbj|GAC84418.1| DNA polymerase III subunit epsilon [Gordonia paraffinivorans NBRC
108238]
Length = 612
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 91/178 (51%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHV--HGITTDM 184
T +V D+ETTG N+RI EI + GGE F TLV+P R +P V GITT M
Sbjct: 44 TLVVVDLETTGSDPANDRITEIGAVKIRGGEVIGEFATLVDPGRPIPPQIVTLTGITTAM 103
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D PR+E ++P L + + G IL VAHNAR FD+ FL R + P N
Sbjct: 104 VT--DAPRIESVLPAFLEFAR------GAIL-VAHNAR-FDMGFLRQNALRLHLDWPFN- 152
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
L + T+T+AR ++ P+ V L L E + + V HRA+ D + +L
Sbjct: 153 LSLCTVTMARRILSR--DEAPT-VRLGHLAELFRVS-VRPTHRALDDARATVEVFHKL 206
>gi|240146857|ref|ZP_04745458.1| DNA polymerase III PolC-type, partial [Roseburia intestinalis
L1-82]
gi|257200990|gb|EEU99274.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
Length = 697
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 107/219 (48%), Gaps = 32/219 (14%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D++ II +K+ T +VFD+ETTGFS + +IIEI ++ GE F T VNP+
Sbjct: 458 DLKDIITNSKNQNLDDTYVVFDLETTGFSPDKNKIIEIGAVKVVHGEITERFSTFVNPEV 517
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + I DMV D P++E ++P + + G + VAHNA FD+ F
Sbjct: 518 PIPYRIEELTSIRDDMVI--DAPKIETILPQFMEFC-------GDAIMVAHNA-DFDMSF 567
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLP--SKVSLQALREYYGIPLVGSAH 286
+I R E + +DT+ LAR L LP ++ L + + G+ L + H
Sbjct: 568 IIKNCERQGIE--KEFTIIDTVALARIL-------LPQLNRFKLDTVAKALGVSL-ENHH 617
Query: 287 RAMADVNCLSLILQRLTFDLKLSLCDLIERGFTPSDLIN 325
RA+ D C + I + +K+ L +RG D +N
Sbjct: 618 RAVDDAGCTAEIFVKF---VKM----LHDRGMETLDQVN 649
>gi|441512147|ref|ZP_20993992.1| DNA polymerase III epsilon subunit [Gordonia amicalis NBRC 100051]
gi|441453114|dbj|GAC51953.1| DNA polymerase III epsilon subunit [Gordonia amicalis NBRC 100051]
Length = 621
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 91/178 (51%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHV--HGITTDM 184
T +V D+ETTG +RI EI + GGE F TLV+P R +P V GITT M
Sbjct: 49 TLVVVDLETTGSDPAGDRITEIGAVKIRGGEVIGEFATLVDPGRPIPPQIVTLTGITTAM 108
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D PR+E ++P L + + G IL VAHNAR FD+ FL R + P +
Sbjct: 109 VT--DAPRIESVLPAFLEFAR------GAIL-VAHNAR-FDMGFLRQNALRLHLDWPFS- 157
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
L + T+T+AR ++ P+ V L AL + + + V HRA+ D + RL
Sbjct: 158 LSLCTVTMARRILSR--DEAPT-VKLSALADLFDVS-VRPTHRALDDARATVEVFHRL 211
>gi|291536049|emb|CBL09161.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
intestinalis M50/1]
Length = 911
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 106/217 (48%), Gaps = 28/217 (12%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D++ II +K+ T +VFD+ETTGFS + +IIEI ++ GE F T VNP+
Sbjct: 464 DLKDIITNSKNQNLDDTYVVFDLETTGFSPDKNKIIEIGAVKVVHGEITERFSTFVNPEV 523
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + I DMV D P++E ++P + + G + VAHNA FD+ F
Sbjct: 524 PIPYRIEELTSIRDDMVI--DAPKIETILPQFMEFC-------GDAIMVAHNA-DFDMSF 573
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+I R E + +DT+ LAR L+ ++ L + + G+ L + HRA
Sbjct: 574 IIKNCERQGIE--KEFTIIDTVALARILLPQ-----LNRFKLDTVAKALGVSL-ENHHRA 625
Query: 289 MADVNCLSLILQRLTFDLKLSLCDLIERGFTPSDLIN 325
+ D C + I + +K+ L +RG D +N
Sbjct: 626 VDDAGCTAEIFVKF---VKM----LHDRGMETLDQVN 655
>gi|197301360|ref|ZP_03166441.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC
29176]
gi|197299517|gb|EDY34036.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
lactaris ATCC 29176]
Length = 1517
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 97/184 (52%), Gaps = 23/184 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T IVFDIETTGFS ++IIEI ++ GE F T VNP+R +P ++ IT +M
Sbjct: 480 TYIVFDIETTGFSAIRDKIIEIGAVKVVNGEIVDRFSTFVNPQRPIPFEITNLTSITDEM 539
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY-EVPNN 243
V + D +E+++P L +V G + VAHNA SFDV F+ C Y E+
Sbjct: 540 VLEAD--PIENVLPQFLEFV-------GDGVLVAHNA-SFDVGFIEQ---NCRYQEIEYR 586
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+ ++DT+ +AR L+ + SK L + + GI L + HRA+ D + I +
Sbjct: 587 FTYVDTVAMARVLLPT-----LSKYKLNLVAKTLGISL-ENHHRAVDDAGATAEIFVKFV 640
Query: 304 FDLK 307
LK
Sbjct: 641 EMLK 644
>gi|409392387|ref|ZP_11243955.1| DNA polymerase III epsilon subunit [Gordonia rubripertincta NBRC
101908]
gi|403197725|dbj|GAB87189.1| DNA polymerase III epsilon subunit [Gordonia rubripertincta NBRC
101908]
Length = 608
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 92/178 (51%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHV--HGITTDM 184
T +V D+ETTG + ++RI EI + GGE F TLV+P R +P V GITT M
Sbjct: 36 TLVVVDLETTGSNPAHDRITEIGAVKIRGGEVIGEFATLVDPGRPIPPQIVTLTGITTAM 95
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D PR+E ++P L + + G IL VAHNAR FD+ FL R + P +
Sbjct: 96 VT--DAPRIESVLPAFLEFAR------GSIL-VAHNAR-FDMGFLRQNALRLHLDWPFS- 144
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
L + T+T+AR ++ + V L AL + + + V HRA+ D + RL
Sbjct: 145 LSLCTVTMARRILPRDEA---PTVKLSALADLFDVS-VRPTHRALDDARATVEVFHRL 198
>gi|429762659|ref|ZP_19295045.1| DNA polymerase III, alpha subunit [Anaerostipes hadrus DSM 3319]
gi|429181293|gb|EKY22465.1| DNA polymerase III, alpha subunit [Anaerostipes hadrus DSM 3319]
Length = 1473
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 28/217 (12%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D+ +I ++K + + + +VFDIETTGF+ N+RIIEI ++ GE TF VNP+R
Sbjct: 430 DLGDLIIDSKGQSLMDSYVVFDIETTGFNSVNDRIIEIGAVRVVEGEIKETFSEFVNPER 489
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + IT DMV D +E+++P L + + + VAHNA FD F
Sbjct: 490 PIPYKITQLTTITDDMV--KDAGTIEEILPQFLRFCEGS-------VLVAHNA-GFDTGF 539
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ R + +P + +DTL LAR LM G K +L + ++ I ++ + HRA
Sbjct: 540 IRENAKRLN--LPYDHTVVDTLGLARCLMGHLG-----KFTLDNICKHLNI-ILETHHRA 591
Query: 289 MADVNCLSLILQRLTFDLKLSLCDLIERGFTPSDLIN 325
+ D I LK E+ T D +N
Sbjct: 592 VDDATATGKIFVEFISMLK-------EKDITDLDQVN 621
>gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
gi|255267960|gb|EET61165.1| hypothetical protein BRYFOR_06810 [Marvinbryantia formatexigens DSM
14469]
Length = 1010
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 86/167 (51%), Gaps = 23/167 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTDMVC 186
+VFD+ETTG S + + +IEI+ + G+ F TLVNP R++P A V+GIT MV
Sbjct: 26 VVFDLETTGISSKYDEVIEISAVKVEAGQVTGEFSTLVNPGRKIPPAASRVNGITDKMVA 85
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+P E L G + V HN SFD+ FL + + +VP+N +
Sbjct: 86 GA-LPFSEVLGDFFAF--------AGDFVLVGHNINSFDMKFLYRDAKKYFRKVPDN-DY 135
Query: 247 MDTLTLARELMKSGGSNLP--SKVSLQALREYYGIPLVGSAHRAMAD 291
+DTL LAR + LP S L L E+YGI G AHRA+ D
Sbjct: 136 VDTLLLAR-------AALPELSHHRLVDLAEHYGISAKG-AHRALND 174
>gi|154502558|ref|ZP_02039618.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
gi|153796750|gb|EDN79170.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
gnavus ATCC 29149]
Length = 1503
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 94/184 (51%), Gaps = 23/184 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEI-AFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDM 184
T IVFDIETTGFS ++IIEI A + G F T VNPKR +P + IT +M
Sbjct: 466 TYIVFDIETTGFSAIKDKIIEIGAVKVKDGAIVEKFSTFVNPKRPIPFEITQLTSITDEM 525
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY-EVPNN 243
V D P +E ++P L +V G + VAHNA FDV F+ C Y E+ +
Sbjct: 526 VL--DAPDIESVLPEFLEFV-------GDGVLVAHNA-GFDVGFIEQ---NCRYQEIEPD 572
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
++ +DT+ LAR L+ + SK L + + GI L + HRA+ D + I +
Sbjct: 573 FVSVDTVALARVLLPT-----LSKYKLNIVAKALGISL-ENHHRAVDDAGATAEIFVKFV 626
Query: 304 FDLK 307
LK
Sbjct: 627 EMLK 630
>gi|336431234|ref|ZP_08611088.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_58FAA]
gi|336020156|gb|EGN49873.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_58FAA]
Length = 1503
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 94/184 (51%), Gaps = 23/184 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEI-AFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDM 184
T IVFDIETTGFS ++IIEI A + G F T VNPKR +P + IT +M
Sbjct: 466 TYIVFDIETTGFSAIKDKIIEIGAVKVKDGAIVEKFSTFVNPKRPIPFEITQLTSITDEM 525
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY-EVPNN 243
V D P +E ++P L +V G + VAHNA FDV F+ C Y E+ +
Sbjct: 526 VL--DAPDIESVLPEFLEFV-------GDGVLVAHNA-GFDVGFIEQ---NCRYQEIEPD 572
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
++ +DT+ LAR L+ + SK L + + GI L + HRA+ D + I +
Sbjct: 573 FVSVDTVALARVLLPT-----LSKYKLNIVAKALGISL-ENHHRAVDDAGATAEIFVKFV 626
Query: 304 FDLK 307
LK
Sbjct: 627 EMLK 630
>gi|443488941|ref|YP_007367088.1| DNA polymerase III [Mycobacterium liflandii 128FXT]
gi|442581438|gb|AGC60581.1| DNA polymerase III [Mycobacterium liflandii 128FXT]
Length = 406
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 84/176 (47%), Gaps = 22/176 (12%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGENST---FQTLVNPKRQVPNAHVHGITTDMVCK 187
V D ETTGF+ E +R++E+ LL E + TL+NP R V A HGI V
Sbjct: 6 VLDFETTGFAAEYDRVVEVGLV-LLSAEGDIEDEWSTLINPHRDVGAAERHGIRARDVLG 64
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF- 246
P E +IP LL ++ R +FVAHN +FD FL+ E R + N WL
Sbjct: 65 --APAFEAIIPRLLRDLRGR-------VFVAHNV-NFDQRFLLAELRRAGVPLDNPWLTG 114
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ A L+ + LP + G+ L AHRA+AD + +L+ L
Sbjct: 115 LCTMRWAGRLLPAASRKLPDCC------DAAGVVLT-DAHRALADARATASLLKYL 163
>gi|317498937|ref|ZP_07957220.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
gi|316893770|gb|EFV15969.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
Length = 1228
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 28/217 (12%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D+ +I ++K + + + +VFDIETTGF+ N+RIIEI ++ GE TF VNP+R
Sbjct: 185 DLGDLIIDSKGQSLMDSYVVFDIETTGFNSVNDRIIEIGAVRVVEGEIKETFSEFVNPER 244
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + IT DMV D +E+++P L + + + VAHNA FD F
Sbjct: 245 PIPYKITQLTTITDDMV--KDAGTIEEILPQFLKFCEGS-------VLVAHNA-GFDTGF 294
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ R + +P + +DTL LAR LM G K +L + ++ I ++ + HRA
Sbjct: 295 IRENAKRLN--LPYDHTVVDTLGLARCLMGHLG-----KFTLDNICKHLNI-ILETHHRA 346
Query: 289 MADVNCLSLILQRLTFDLKLSLCDLIERGFTPSDLIN 325
+ D I LK E+ T D +N
Sbjct: 347 VDDATATGKIFVEFISMLK-------EKDITDLDQVN 376
>gi|255284409|ref|ZP_05348964.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
formatexigens DSM 14469]
gi|255265034|gb|EET58239.1| DNA polymerase III, alpha subunit, Gram-positive type
[Marvinbryantia formatexigens DSM 14469]
Length = 1530
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 110/233 (47%), Gaps = 31/233 (13%)
Query: 97 VNKTEISKIQR-------IQHY---DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERI 146
V K E+ KI ++ Y D+++++ +K+ A T +VFD+ETTGFS RI
Sbjct: 468 VTKDELKKISHPFKVLYGVEGYLVDDLQKLVTNSKNQAIESTCVVFDLETTGFSPTQNRI 527
Query: 147 IEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHY 203
IEI + GE F T VNP+ +P + I +MV D P +E ++P L +
Sbjct: 528 IEIGAVKVENGEITDRFSTFVNPQVPIPFRIEQLTSINDNMVM--DAPTIEQVLPEFLDF 585
Query: 204 VKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSN 263
V G + AHNA SFDV F+ R + ++ ++DT+ LAR L+
Sbjct: 586 V-------GDAVLAAHNA-SFDVSFIEENMRRLG--LWRDFTYVDTVALARVLLPQ---- 631
Query: 264 LPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLKLSLCDLIER 316
++ L + + + L HRA+ D C + I + LKL D ++
Sbjct: 632 -LNRFKLDTVAKALHVQL-QHHHRAVDDAECTAGIYLKFMEMLKLQGADTFDQ 682
>gi|407643470|ref|YP_006807229.1| hypothetical protein O3I_011470 [Nocardia brasiliensis ATCC 700358]
gi|407306354|gb|AFU00255.1| hypothetical protein O3I_011470 [Nocardia brasiliensis ATCC 700358]
Length = 728
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 108/217 (49%), Gaps = 26/217 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNA--HVHGITTDM 184
T +V D+ETTG S + I EI + GGE F TLVNP R VP A V GITT M
Sbjct: 27 TFVVVDLETTGTSPGADAITEIGAVKVRGGEVLGEFATLVNPGRAVPPAIVQVTGITTAM 86
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V P+++ ++P L + G +L VAHNAR FD+ FL ++C P+
Sbjct: 87 VYA--APKIDAVLPGFLEFAA------GAVL-VAHNAR-FDMAFLRAAAAQCETPWPSAT 136
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQ 300
+ T+ LAR ++ G PS V L L + G HRA+ D V+ L ++
Sbjct: 137 VLC-TVKLARRVL--GRDEAPS-VRLSVLAQLLGA-STQPTHRALDDARATVDVLHALIG 191
Query: 301 RLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
R+ SL +L++ + P + P+++ K L ++
Sbjct: 192 RVGNQGVHSLTELVD--YLPD--VTPRQRAKRFLAAD 224
>gi|167766537|ref|ZP_02438590.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
gi|167711660|gb|EDS22239.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. SS2/1]
Length = 1473
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 107/217 (49%), Gaps = 28/217 (12%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D+ +I ++K + + + +VFDIETTGF+ N+RIIEI ++ GE TF VNP+R
Sbjct: 430 DLGDLIIDSKGQSLMDSYVVFDIETTGFNSVNDRIIEIGAVRVVEGEIKETFSEFVNPER 489
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + IT DMV D +E+++P L + G +L VAHNA FD F
Sbjct: 490 PIPYKITQLTTITDDMV--KDAGTIEEILPQFLKFC------AGSVL-VAHNA-GFDTGF 539
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ R + +P + +DTL LAR LM G K +L + ++ I ++ + HRA
Sbjct: 540 IRENAKRLN--LPYDHTVVDTLGLARCLMGHLG-----KFTLDNICKHLNI-ILETHHRA 591
Query: 289 MADVNCLSLILQRLTFDLKLSLCDLIERGFTPSDLIN 325
+ D I LK E+ T D +N
Sbjct: 592 VDDATATGKIFVEFISMLK-------EKDITDLDQVN 621
>gi|325263721|ref|ZP_08130454.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. D5]
gi|324030759|gb|EGB92041.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. D5]
Length = 1498
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 94/184 (51%), Gaps = 23/184 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T IVFD+ETTGFS ++IIEI ++ GE F T VNPKR +P + IT +M
Sbjct: 460 TYIVFDLETTGFSAIKDKIIEIGAVKVVNGEIVDRFSTFVNPKRPIPFQITQLTSITDEM 519
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY-EVPNN 243
V P +E ++P L + K + VAHNA FDV F+ C Y ++ +
Sbjct: 520 VMG--YPDIETILPQFLEFAKDG-------VLVAHNA-GFDVGFIEQ---NCRYQDIEPH 566
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
++++DT+ +AR L+ + SK L + + GI L + HRA+ D S I +
Sbjct: 567 FVYVDTVAMARVLLPT-----LSKYKLNVVAKALGISL-ENHHRAVDDAAATSEIFVKFV 620
Query: 304 FDLK 307
LK
Sbjct: 621 QMLK 624
>gi|291558576|emb|CBL37376.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
bacterium SSC/2]
Length = 1470
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 107/217 (49%), Gaps = 28/217 (12%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D+ +I ++K + + + +VFDIETTGF+ N+RIIEI ++ GE TF VNP+R
Sbjct: 427 DLGDLIIDSKGQSLMDSYVVFDIETTGFNSVNDRIIEIGAVRVVEGEIKETFSEFVNPER 486
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + IT DMV D +E+++P L + G +L VAHNA FD F
Sbjct: 487 PIPYKITQLTTITDDMV--KDAGTIEEILPQFLKFC------AGSVL-VAHNA-GFDTGF 536
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ R + +P + +DTL LAR LM G K +L + ++ I ++ + HRA
Sbjct: 537 IRENAKRLN--LPYDHTVVDTLGLARCLMGHLG-----KFTLDNICKHLNI-ILETHHRA 588
Query: 289 MADVNCLSLILQRLTFDLKLSLCDLIERGFTPSDLIN 325
+ D I LK E+ T D +N
Sbjct: 589 VDDATATGKIFVEFISMLK-------EKDITDLDQVN 618
>gi|291538542|emb|CBL11653.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
intestinalis XB6B4]
Length = 905
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 105/217 (48%), Gaps = 28/217 (12%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D++ II +K+ T +VFD+ETTGFS + +IIEI + GE F T VNP+
Sbjct: 458 DLKDIITNSKNQNLDDTYVVFDLETTGFSPDKNKIIEIGAVKVEHGEITERFSTFVNPEV 517
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + I DMV D P++E ++P + + G + VAHNA FD+ F
Sbjct: 518 PIPYRIEELTSIRDDMVI--DAPKIETILPQFMEFC-------GDAIMVAHNA-DFDMSF 567
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+I R E + +DT+ LAR L+ ++ L + + G+ L + HRA
Sbjct: 568 IIKNCERQGIE--KEFTIIDTVALARILLPQ-----LNRFKLDTVAKALGVSL-ENHHRA 619
Query: 289 MADVNCLSLILQRLTFDLKLSLCDLIERGFTPSDLIN 325
+ D C + I + +K+ L +RG D +N
Sbjct: 620 VDDAGCTAEIFVKF---VKM----LHDRGMETLDQVN 649
>gi|62185003|ref|YP_219788.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3]
gi|424825056|ref|ZP_18250043.1| DNA polymerase III, epsilon chain [Chlamydophila abortus LLG]
gi|62148070|emb|CAH63824.1| DNA polymerase III, epsilon chain [Chlamydophila abortus S26/3]
gi|333410155|gb|EGK69142.1| DNA polymerase III, epsilon chain [Chlamydophila abortus LLG]
Length = 228
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 101/214 (47%), Gaps = 20/214 (9%)
Query: 126 LVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTD 183
+ T I +D ETTG + +RIIEIA + + E +F T VNP+ +P + +HGITT
Sbjct: 1 MTTLIFYDTETTGTQIDKDRIIEIAAYNHITKE--SFVTYVNPEIPIPEEASKIHGITTS 58
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
V P+ + + G + VAHN SFD P + E R + E P +
Sbjct: 59 TVIS--APKFPEAYKHFCEFC------GNDAVLVAHNNDSFDFPLMEKECRRHALE-PLS 109
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+D+L A++ +LP K +LQ LR+ YG AHRA+ DV L + L
Sbjct: 110 LKTIDSLKWAQKYR----PDLP-KHNLQYLRQVYGF-AENQAHRALDDVITLHNVFSALI 163
Query: 304 FDLKL-SLCDLIERGFTPSDLINPKKKKKSKLVS 336
DL + L+E + P P K K K +S
Sbjct: 164 GDLSAEQVLALMEESYHPKTFKMPFGKYKGKPLS 197
>gi|294668271|ref|ZP_06733376.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309790|gb|EFE51033.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 493
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 92/175 (52%), Gaps = 24/175 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
++ D+E TG + +RI EIAF G S+++ LVNP+R +P +++ GI +MV
Sbjct: 22 VIIDLEATGGNPYTDRITEIAFLRFDGNGVSSYRQLVNPQRNIPEFVSNLTGIDDEMVA- 80
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC--SYEVPNNWL 245
D P DL LLH ++ L +AHN++ FD FL +EFSRC SY P
Sbjct: 81 -DAPPFADLSDDLLHRLRG-------TLLLAHNSK-FDYTFLRHEFSRCRLSYAAPT--- 128
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
+ T+ L+R L K +L ++ E + I V S HRAM DV L+ L+
Sbjct: 129 -LCTVQLSRRLYPQF-----FKHNLDSIIERHQI-AVSSRHRAMNDVLALADYLE 176
>gi|118616866|ref|YP_905198.1| DNA polymerase [Mycobacterium ulcerans Agy99]
gi|118568976|gb|ABL03727.1| DNA polymerase [Mycobacterium ulcerans Agy99]
Length = 500
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 85/187 (45%), Gaps = 22/187 (11%)
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENST---FQTLVNPKRQVPNAH 176
N+ + + V D ETTGF+ E +R++E+ LL E + TL+NP R V
Sbjct: 89 NRGVVDVAGFAVLDFETTGFAAEYDRVVEVGLV-LLSAEGDIEDEWSTLINPHRDVGATE 147
Query: 177 VHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC 236
HGI V P E +IP LL ++ R +FVAHN +FD FL+ E R
Sbjct: 148 RHGIRARDVLG--APAFEAIIPRLLRDLRGR-------VFVAHNV-NFDQRFLLAELRRA 197
Query: 237 SYEVPNNWLF-MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL 295
+ N WL + T+ A L+ + LP + + AHRA+AD
Sbjct: 198 GVPLDNPWLTGLCTMRWAGRLLPAASRKLPDCCDAAGV-------FLTDAHRALADARAT 250
Query: 296 SLILQRL 302
+ +L+ L
Sbjct: 251 ASLLKYL 257
>gi|406593321|ref|YP_006740500.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci NJ1]
gi|405789193|gb|AFS27935.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci NJ1]
Length = 228
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 100/214 (46%), Gaps = 20/214 (9%)
Query: 126 LVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTD 183
+ T I +D ETTG + +RIIEIA + E +F T VNP+ +P + +HGITT
Sbjct: 1 MTTLIFYDTETTGTQIDKDRIIEIAAYNHKTKE--SFVTYVNPEIPIPEEASKIHGITTS 58
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P+ + + G + VAHN SFD P L E R + P +
Sbjct: 59 MVIS--APKFPEAYKHFCDFC------GNEAVLVAHNNDSFDFPLLEKECRRHALP-PLS 109
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+D+L A++ +LP K +LQ LR+ YG AHRA+ DV L + L
Sbjct: 110 LKTIDSLKWAQKYR----PDLP-KHNLQYLRQVYGF-AENQAHRALDDVITLHNVFSALI 163
Query: 304 FDLKL-SLCDLIERGFTPSDLINPKKKKKSKLVS 336
DL + L+E + P P K K K +S
Sbjct: 164 GDLSAEQVLALMEESYHPKTFKMPFGKYKGKPLS 197
>gi|336427149|ref|ZP_08607153.1| hypothetical protein HMPREF0994_03159 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336010002|gb|EGN39989.1| hypothetical protein HMPREF0994_03159 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 1566
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 21/195 (10%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D+++I+ K + +VFDIETTGFS +IIEI ++ GE F T VNP+
Sbjct: 524 DLKEIVTNGKGQPLKGSYVVFDIETTGFSPIKNKIIEIGAVKVINGEITERFSTFVNPQV 583
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + I DMV + P +E+++P L + + + VAHNA SFD+ F
Sbjct: 584 PIPFEIEKLTSINDDMVM--EAPVIEEVLPRFLEFCEG-------CVLVAHNA-SFDISF 633
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ R ++P ++ ++DT+ +AR L+ +K +L A+ + GI L + HRA
Sbjct: 634 IRENAER--QQLPFDYTYVDTVGIARVLLPH-----QAKHTLDAVCKSLGISL-ENHHRA 685
Query: 289 MADVNCLSLILQRLT 303
+ D + I +L+
Sbjct: 686 VDDAEATAEIFIKLS 700
>gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
B-59395]
Length = 623
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 99/201 (49%), Gaps = 18/201 (8%)
Query: 105 IQRIQHYDIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQ 163
++++ D+ + + + T +V D+ETTG S +++RI EI + GGE F
Sbjct: 35 VEQLSFEDLPEADEFTRSALRDTTFVVVDLETTGGSADDDRITEIGAVKIRGGEVLGEFA 94
Query: 164 TLVNPKRQVPNAHVH--GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNA 221
TLV+P R +P V GITT M+ D PR+E+++P + + + VAHNA
Sbjct: 95 TLVDPGRAIPPQIVALTGITTAMLY--DAPRIEEVLPAFAEFARG-------TVLVAHNA 145
Query: 222 RSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPL 281
R FD+ FL +R P + + T+ +AR ++ P+ V L AL E + +
Sbjct: 146 R-FDMGFLRKSAARMRLPWPFS-TSLCTVVMARRILSR--QEAPT-VKLSALAELFQVS- 199
Query: 282 VGSAHRAMADVNCLSLILQRL 302
V HRA+ D + RL
Sbjct: 200 VRPTHRALDDARATVEVFHRL 220
>gi|333918956|ref|YP_004492537.1| putative DNA polymerase III subunit epsilon [Amycolicicoccus
subflavus DQS3-9A1]
gi|333481177|gb|AEF39737.1| Putative DNA polymerase III epsilon subunit [Amycolicicoccus
subflavus DQS3-9A1]
Length = 588
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 100/199 (50%), Gaps = 28/199 (14%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
+T +V D+ETTG S +++RI EI + GGE F TLVNP+R +P + GIT+
Sbjct: 38 ITFVVVDLETTGGSSDSDRITEIGAVKIQGGEVLGEFATLVNPERDIPPYVVQITGITSA 97
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ + P + +++P L + + + VAHNA FD+ FL RC
Sbjct: 98 MIYQ--APTIREVMPGFLEFARG-------TVLVAHNA-GFDMSFLKAAAQRCDLA---- 143
Query: 244 WLF---MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLS 296
W F + T+ LAR ++ PS V L AL + + +P + HRA+ D V+ L
Sbjct: 144 WSFPRPVCTVKLARRILSK--DEAPS-VKLSALADLFRVPHRPT-HRALDDARATVDVLH 199
Query: 297 LILQRLTFDLKLSLCDLIE 315
+ +R+ SL +L E
Sbjct: 200 ALFERVGNKGIHSLGELTE 218
>gi|154505436|ref|ZP_02042174.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149]
gi|336434007|ref|ZP_08613813.1| hypothetical protein HMPREF0991_02932 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153794279|gb|EDN76699.1| topoisomerase DNA-binding C4 zinc finger domain protein
[Ruminococcus gnavus ATCC 29149]
gi|336014746|gb|EGN44580.1| hypothetical protein HMPREF0991_02932 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 219
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 84/164 (51%), Gaps = 19/164 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGG-ENSTFQTLVNPKRQVP--NAHVHGITTDMVCK 187
VFD+ETTG S + IIEI+ + GG TF TLVNP R +P V+GIT MV
Sbjct: 17 VFDLETTGISANMDDIIEISAVKVKGGIVQDTFSTLVNPGRHIPAQATKVNGITDQMV-- 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
+ P + + + L +V G + V HN +SFD+ F+ E E +N F+
Sbjct: 75 SEAPLIREAMTEFLRFV-------GEDILVGHNIQSFDMKFIYREVEELFQETVSN-DFI 126
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
DTL +AR+ + + L L E++GI G AHRA+ D
Sbjct: 127 DTLYMARKCLPELKHH-----RLTDLAEHFGISSKG-AHRALND 164
>gi|336179029|ref|YP_004584404.1| DNA polymerase III subunit epsilon [Frankia symbiont of Datisca
glomerata]
gi|334860009|gb|AEH10483.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca
glomerata]
Length = 629
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 101/216 (46%), Gaps = 22/216 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG + I EI + GGE + TLV P +P + + GIT
Sbjct: 91 VTFVVVDLETTGSRAADSEITEIGAVKIRGGEVLAELATLVRPDAPIPPFISVLTGITDA 150
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV PR++ +P L + G +L VAHNA FD+ FL RC + VP +
Sbjct: 151 MVAT--APRIDAALPTFLEFAH------GSVL-VAHNA-PFDLGFLREACVRCGHPVP-D 199
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
W +DTL +AR+++ G + L +L + G HRA+AD +L L
Sbjct: 200 WEHLDTLRIARQVL---GRDETPDHKLASLARLFPA-DAGPCHRALADARATVAVLHGLF 255
Query: 304 FDLKLSLCDLIER--GFTPSDLINPKKKKKSKLVSN 337
L +E GF S ++P +++K L +
Sbjct: 256 ERLGGFGVTTLEELHGF--SRKVSPARRRKRHLADD 289
>gi|363423197|ref|ZP_09311268.1| hypothetical protein AK37_21349, partial [Rhodococcus
pyridinivorans AK37]
gi|359732338|gb|EHK81358.1| hypothetical protein AK37_21349, partial [Rhodococcus
pyridinivorans AK37]
Length = 396
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 26/217 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG + I EI + GGE F TLV+P R +P V GITT M
Sbjct: 16 TFVVVDLETTGGKAAEDAITEIGAVKIRGGEVLGEFATLVDPGRPIPPYIVQLTGITTAM 75
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V P++E+++P L + + VAHNA FDV FL ++C P +
Sbjct: 76 VYA--APKVEEVLPAFLEFASG-------AVLVAHNA-GFDVGFLEAATAQCELAWP-RF 124
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQ 300
+ T+ LAR ++ G PS V L AL E + + V + HRA+ D V+ L +++
Sbjct: 125 QVLCTVKLARRVL--GRDEAPS-VKLSALAELFRVSTVPT-HRALDDARATVDVLHALIE 180
Query: 301 RLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
R+ SL +L R + P ++ +++ K L ++
Sbjct: 181 RVGNQGVHSLTEL--RDYMP--VVTAEQRAKRALAAH 213
>gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
gi|387901655|ref|YP_006331994.1| DNA polymerase III subunit epsilon [Burkholderia sp. KJ006]
gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
gi|387576547|gb|AFJ85263.1| DNA polymerase III epsilon subunit [Burkholderia sp. KJ006]
Length = 375
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 85/175 (48%), Gaps = 20/175 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG S RI EI ++ G ST+ TLVNP + +P + GI+ DMV
Sbjct: 16 VFVDLETTGGSPAEHRITEIGVVEIGPGHMSTWTTLVNPGQPIPPFIQQLTGISDDMVR- 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P L P L + + LFVAHNA SFD FL EF R + +
Sbjct: 75 -DAPSFASLAPALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAGLAFNPD--VL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
T+ L+R L S+ L AL E YG+ + + HRA+AD + + ++L
Sbjct: 124 CTVKLSRALFPR-----ESRHGLDALIERYGL-VPAARHRALADADLIWQFWRQL 172
>gi|392383639|ref|YP_005032836.1| conserved membrane protein of unknown function; DNA polymerase III
domain [Azospirillum brasilense Sp245]
gi|356878604|emb|CCC99491.1| conserved membrane protein of unknown function; DNA polymerase III
domain [Azospirillum brasilense Sp245]
Length = 735
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 28/186 (15%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLGGE---NSTFQTLVNPKRQVPNAHV--HGITTD 183
+VFD ETTG S + II+IA ++GG TF TLVNPKR +P + HGIT
Sbjct: 543 VVFDTETTGLSPSTGDEIIQIAAVRVVGGRILTGETFNTLVNPKRSIPPESIPFHGITDA 602
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFL--INEFSRCSYEVP 241
MV D P ++ ++P +V G +L +AHNA +FD+ FL + S ++ P
Sbjct: 603 MVA--DKPTIDKVLPQFRGFVS------GAVL-IAHNA-AFDLKFLKMKEKASGVRFDSP 652
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ L+R L+ GG + +L + E GI +V H A+ D + + R
Sbjct: 653 ----VLDTMLLSRMLLGEGGDH-----TLDGIAERLGIEVV-DRHTALGDSLVTAAVFLR 702
Query: 302 LTFDLK 307
+ LK
Sbjct: 703 MVEMLK 708
>gi|431747485|ref|ZP_19536276.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E2134]
gi|430606113|gb|ELB43479.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E2134]
Length = 600
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 96/177 (54%), Gaps = 20/177 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIA---FQDLLGGENSTFQTLVNPKRQVP--NAHVHGITT 182
T I FD+ETTG + ++RI+EI F++ G +F TLVNPK ++ + ++ IT
Sbjct: 50 TFIAFDVETTGLNSSSDRIVEIGAVLFKE--GVPIQSFGTLVNPKVRIAASASAINNITN 107
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
+M+ P +++ P L+ ++ G I AHNA SFD FL N FSR Y+
Sbjct: 108 EML--NSAPNEQEVYPQLVEFLG--DALDGKITMCAHNA-SFDFGFLSNTFSRLGYDAKI 162
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
++DTL+L+R+ +K ++ V+ EY+G+ + +AHRA +D + I
Sbjct: 163 K--YVDTLSLSRKHIKGIVNHKQETVA-----EYFGL-INDTAHRAESDADICGKIF 211
>gi|431739430|ref|ZP_19528360.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1972]
gi|430595895|gb|ELB33772.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1972]
Length = 600
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 96/177 (54%), Gaps = 20/177 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIA---FQDLLGGENSTFQTLVNPKRQVP--NAHVHGITT 182
T I FD+ETTG + ++RI+EI F++ G +F TLVNPK ++ + ++ IT
Sbjct: 50 TFIAFDVETTGLNSSSDRIVEIGAVLFKE--GVPIQSFGTLVNPKVRIAASASAINNITN 107
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
+M+ P +++ P L+ ++ G I AHNA SFD FL N FSR Y+
Sbjct: 108 EML--NSAPNEQEVYPQLVEFLG--DALDGKITMCAHNA-SFDFGFLSNTFSRLGYDAKI 162
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
++DTL+L+R+ +K ++ V+ EY+G+ + +AHRA +D + I
Sbjct: 163 K--YVDTLSLSRKHIKGIVNHKQETVA-----EYFGL-INDTAHRAESDADICGKIF 211
>gi|430851478|ref|ZP_19469226.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1185]
gi|431268072|ref|ZP_19506198.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1623]
gi|430534002|gb|ELA74477.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1185]
gi|430576115|gb|ELB14798.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1623]
Length = 600
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 96/177 (54%), Gaps = 20/177 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIA---FQDLLGGENSTFQTLVNPKRQVP--NAHVHGITT 182
T I FD+ETTG + ++RI+EI F++ G +F TLVNPK ++ + ++ IT
Sbjct: 50 TFIAFDVETTGLNSSSDRIVEIGAVLFKE--GVPIQSFGTLVNPKVRIAASASAINNITN 107
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
+M+ P +++ P L+ ++ G I AHNA SFD FL N FSR Y+
Sbjct: 108 EML--NSAPNEQEVYPQLVEFLG--DALDGKITMCAHNA-SFDFGFLSNTFSRLGYDAKI 162
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
++DTL+L+R+ +K ++ V+ EY+G+ + +AHRA +D + I
Sbjct: 163 K--YVDTLSLSRKHIKGIVNHKQETVA-----EYFGL-INDTAHRAESDADICGKIF 211
>gi|15835150|ref|NP_296909.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
gi|270285322|ref|ZP_06194716.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
gi|270289339|ref|ZP_06195641.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss]
gi|301336719|ref|ZP_07224921.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14]
gi|8163241|gb|AAF73567.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum
Nigg]
Length = 232
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 100/210 (47%), Gaps = 20/210 (9%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVP--NAHVHGITTDMVCK 187
I +D ETTG + +RI+EIA + GE +FQTLVNP+ +P +HGITT V
Sbjct: 5 IFYDTETTGTQIDKDRIVEIAAYNGTTGE--SFQTLVNPEIPIPAEATKIHGITTSEVA- 61
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
+ P+ + Y + G + VAHN +FD P L+ E R P +
Sbjct: 62 -NAPKFPEA------YQQFSDFCGTDNILVAHNNNAFDYPLLLRECRRHGLPEP-QLRTI 113
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLK 307
D+L A++ ++LP SLQ LR+ YG +AHRA+ DV L + L DL
Sbjct: 114 DSLKWAKKYR----TDLPQH-SLQYLRQVYGFE-ENNAHRALDDVITLHRVFSVLVGDLS 167
Query: 308 LS-LCDLIERGFTPSDLINPKKKKKSKLVS 336
+ +L+ P P K K K +S
Sbjct: 168 PDQIYNLLNETCHPRVFKMPFGKYKGKPLS 197
>gi|407277410|ref|ZP_11105880.1| hypothetical protein RhP14_12960, partial [Rhodococcus sp. P14]
Length = 532
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 108/215 (50%), Gaps = 26/215 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D+ETTG S ++ I EI + GGE F TLV+P R +P + GITT MV
Sbjct: 47 VVVDLETTGGSSTDDAITEIGAVKIRGGEVLGEFATLVDPGRSIPPNIVQLTGITTAMVR 106
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
PR+E ++P L + G +L VAHNA FDV FL SR P +
Sbjct: 107 S--APRIEQVLPSFLEFA------AGAVL-VAHNA-GFDVGFLRAAASRAEVAWP-RFTV 155
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQRL 302
+ T+ LAR ++ G PS V L AL E + + + HRA+ D V+ L +++R+
Sbjct: 156 LCTVKLARRVL--GRDEAPS-VRLSALAELFRVSTTPT-HRALDDARATVDVLHALIERV 211
Query: 303 TFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
SL +L R + P+ + +++ K L ++
Sbjct: 212 GNQGVHSLTEL--RDYLPA--VTAEQRAKRSLAAH 242
>gi|424790990|ref|ZP_18217482.1| NUMOD1 domain protein [Enterococcus faecium V689]
gi|424954709|ref|ZP_18369595.1| NUMOD1 domain protein [Enterococcus faecium R494]
gi|425039612|ref|ZP_18444135.1| NUMOD1 domain protein [Enterococcus faecium 513]
gi|402920162|gb|EJX40698.1| NUMOD1 domain protein [Enterococcus faecium V689]
gi|402935858|gb|EJX55068.1| NUMOD1 domain protein [Enterococcus faecium R494]
gi|403015338|gb|EJY28248.1| NUMOD1 domain protein [Enterococcus faecium 513]
Length = 606
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 96/177 (54%), Gaps = 20/177 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIA---FQDLLGGENSTFQTLVNPKRQVP--NAHVHGITT 182
T I FD+ETTG + ++RI+EI F++ G +F TLVNPK ++ + ++ IT
Sbjct: 56 TFIAFDVETTGLNSSSDRIVEIGAVLFKE--GVPIQSFGTLVNPKVRIAASASAINNITN 113
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
+M+ P +++ P L+ ++ G I AHNA SFD FL N FSR Y+
Sbjct: 114 EML--NSAPNEQEVYPQLVEFLG--DALDGKITMCAHNA-SFDFGFLSNTFSRLGYDAKI 168
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
++DTL+L+R+ +K ++ V+ EY+G+ + +AHRA +D + I
Sbjct: 169 K--YVDTLSLSRKHIKGIVNHKQETVA-----EYFGL-INDTAHRAESDADICGKIF 217
>gi|46446795|ref|YP_008160.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia
amoebophila UWE25]
gi|46400436|emb|CAF23885.1| putative DNA polymerase III, epsilon chain, mutD [Candidatus
Protochlamydia amoebophila UWE25]
Length = 216
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 19/174 (10%)
Query: 146 IIEIAFQDLLGGENSTFQTLVNPKRQVP--NAHVHGITTDMVCKPDVPRMEDLIPILLHY 203
+IEIA D + +N F+ V+P +P + +H IT +MV + D+ + +
Sbjct: 1 MIEIAAYDPV--QNRRFEKFVHPGFPIPPESTAIHHITDEMVA--NAGSFADVGAEFVEF 56
Query: 204 VKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSN 263
G ++ +AHN +FD+ FL +EF R +P +W F+D+L AR S+
Sbjct: 57 C------AGEVVLIAHNNDNFDLHFLRHEFERNQLILPTHWKFLDSLKWARRYR----SD 106
Query: 264 LPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLKL-SLCDLIER 316
LP + +LQ LRE YGI +AHRA+ DV L + + + DL++ + DL+ R
Sbjct: 107 LP-RHTLQFLREIYGI-TANNAHRALDDVIVLERVFRSMVDDLEIQDVFDLLNR 158
>gi|294507448|ref|YP_003571506.1| DNA polymerase III subunit epsilon [Salinibacter ruber M8]
gi|294343776|emb|CBH24554.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8]
Length = 563
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 95/184 (51%), Gaps = 22/184 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEI-AFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTD 183
T +V D+ETTG + +++RI+EI A + G FQ LVNP++ VP + GITT
Sbjct: 6 ATFVVTDLETTGTTPDDDRIMEIGAVKVRDGAVVDRFQQLVNPQQSVPGRITKMTGITTG 65
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE-VPN 242
MV + P ++++P ++ G + VAHN SFD FL E R E +PN
Sbjct: 66 MVF--EAPPADEVLPDYRAFL-------GDGILVAHNV-SFDGSFLDAELQRMGDETLPN 115
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
L T+ LAR L+ L SK L L ++Y I + G HRA+ D S++L+R
Sbjct: 116 ETLC--TVRLARRLL----PGLDSK-GLSRLAQFYDIDVEGR-HRALGDAEATSVVLRRF 167
Query: 303 TFDL 306
L
Sbjct: 168 VSQL 171
>gi|424884110|ref|ZP_18307737.1| NUMOD1 domain protein [Enterococcus faecium R497]
gi|402933879|gb|EJX53282.1| NUMOD1 domain protein [Enterococcus faecium R497]
Length = 606
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 96/177 (54%), Gaps = 20/177 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIA---FQDLLGGENSTFQTLVNPKRQVP--NAHVHGITT 182
T I FD+ETTG + ++RI+EI F++ G +F TLVNPK ++ + ++ IT
Sbjct: 56 TFIAFDVETTGLNSSSDRIVEIGAVLFKE--GVPIQSFGTLVNPKVRIAASASAINNITN 113
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
+M+ P +++ P L+ ++ G I AHNA SFD FL N FSR Y+
Sbjct: 114 EML--NSAPNEQEVYPQLVEFLG--DALDGKITMCAHNA-SFDFGFLSNTFSRLGYDAKI 168
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
++DTL+L+R+ +K ++ V+ EY+G+ + +AHRA +D + I
Sbjct: 169 K--YVDTLSLSRKHIKGIVNHKQETVA-----EYFGL-INDTAHRAESDADICGKIF 217
>gi|438002346|ref|YP_007272089.1| hypothetical protein TEPIRE1_14360 [Tepidanaerobacter acetatoxydans
Re1]
gi|432179140|emb|CCP26113.1| hypothetical protein TEPIRE1_14360 [Tepidanaerobacter acetatoxydans
Re1]
Length = 613
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 92/183 (50%), Gaps = 25/183 (13%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K VT +V DIETTG +N+ IIEI +L E F + + P+R +P ++ GIT
Sbjct: 404 KDVTFVVVDIETTGLCFDNDEIIEIGAVKILNNEIIDRFSSFIKPQRLIPTNIINLTGIT 463
Query: 182 TDMV--CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
DM+ +P +E ++P + ++ G +FVAHNA FD F+ E S+
Sbjct: 464 NDMLKTARP----IEKVLPSFMEFL-------GDGVFVAHNAE-FDSGFIRREASKLGIP 511
Query: 240 VPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
NN +DTL LAR + ++ L L + I + GS HRA+ D +LIL
Sbjct: 512 FKNN--ILDTLALARIIFSKLKNH-----RLDTLAKELNIKM-GSHHRAIDDAKTAALIL 563
Query: 300 QRL 302
Q L
Sbjct: 564 QEL 566
>gi|422874612|ref|ZP_16921097.1| DNA polymerase III PolC [Clostridium perfringens F262]
gi|380304253|gb|EIA16542.1| DNA polymerase III PolC [Clostridium perfringens F262]
Length = 1449
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 90/174 (51%), Gaps = 21/174 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS +N++IIEI L GE +F T V+PK +P + IT +MV
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMVN 495
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P +++++P + +V G + VAHNA +FDV F+ + + N
Sbjct: 496 GQ--PTIDEVLPKFMEFV-------GDSVLVAHNA-AFDVGFIKKNLADMGKTLKNP--V 543
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
MDT+ LAR L KV L + ++ GI L + HRA+ D + IL+
Sbjct: 544 MDTVPLARYLYPD-----LKKVKLNLVAKHLGISL-ENHHRAVDDAKATAEILK 591
>gi|161986630|ref|YP_445565.2| hypothetical protein SRU_1441 [Salinibacter ruber DSM 13855]
Length = 563
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 22/184 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTD 183
T +V D+ETTG + +++RI+EI + G FQ LVNP++ VP + GITT
Sbjct: 6 ATFVVTDLETTGTTPDDDRIMEIGAVKVRDGSVVDRFQQLVNPQQSVPGRITKMTGITTG 65
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE-VPN 242
MV + P ++++P ++ G + VAHN SFD FL E R E +PN
Sbjct: 66 MVF--EAPPADEVLPDYRAFL-------GDGILVAHNV-SFDGSFLDAELQRMGDETLPN 115
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
L T+ LAR L+ L SK L L ++Y I + G HRA+ D S++L+R
Sbjct: 116 ETLC--TVRLARRLL----PGLDSK-GLSRLAQFYDIDVEGR-HRALGDAEATSVVLRRF 167
Query: 303 TFDL 306
L
Sbjct: 168 VSQL 171
>gi|441520348|ref|ZP_21002016.1| DNA polymerase III epsilon subunit [Gordonia sihwensis NBRC 108236]
gi|441460096|dbj|GAC59977.1| DNA polymerase III epsilon subunit [Gordonia sihwensis NBRC 108236]
Length = 586
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG S EN+RI EI + GGE F TLV+P R +P V GITT M
Sbjct: 26 TFVVVDLETTGGSPENDRITEIGAVKIRGGEVLGEFATLVDPGRAIPPQIVALTGITTAM 85
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P +E ++P + + + + VAHNAR FD+ FL +R P +
Sbjct: 86 LY--DAPAVEAVLPSFVEFARG-------CVLVAHNAR-FDMGFLRRSAARAGLPWPFS- 134
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ +AR ++ PS V L AL + + + V HRA+ D + RL
Sbjct: 135 ASLCTVVMARRILSR--QEAPS-VKLFALADLFDVS-VRPTHRALDDARATVDVFHRL 188
>gi|441509788|ref|ZP_20991701.1| DNA polymerase III subunit epsilon [Gordonia aichiensis NBRC
108223]
gi|441446063|dbj|GAC49662.1| DNA polymerase III subunit epsilon [Gordonia aichiensis NBRC
108223]
Length = 597
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG S +RI EI + GGE F TLV+P R +P V GIT M
Sbjct: 30 TLVVVDLETTGGSATEDRITEIGAVKIRGGEVLGEFATLVDPGRSIPPQIVALTGITEAM 89
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D PR+++++P + + + G IL VAHNAR FD+ FL R +W
Sbjct: 90 IY--DAPRIDEVLPSFIEFAR------GSIL-VAHNAR-FDMSFLRQNALRLHL----HW 135
Query: 245 LFMDTL---TLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
F TL T+AR ++ G + V L AL E + + V HRA+ D +
Sbjct: 136 PFTATLCTVTMARRIL---GRDEAPTVRLSALAELFDV-TVRPTHRALDDARATVEVFHH 191
Query: 302 L 302
L
Sbjct: 192 L 192
>gi|194246813|ref|YP_002004452.1| DNA polymerase III subunit alpha [Candidatus Phytoplasma mali]
gi|193807170|emb|CAP18609.1| DNA polymerase III, alpha subunit [Candidatus Phytoplasma mali]
Length = 1449
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 104/190 (54%), Gaps = 22/190 (11%)
Query: 117 IAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA 175
I ++ DL L T ++FD ETTG S+ N++IIEIA + + FQTL+NP++++
Sbjct: 398 ITQDYDL-NLATYVIFDFETTGLSKINDQIIEIAAIKIQNNQIIDEFQTLINPQQELT-P 455
Query: 176 HVHGITTDMVCKPDV---PRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINE 232
+ +T + D+ P + ++P L + ++ + +AHN SFD+ FL+N+
Sbjct: 456 FIENLTN--ISNQDLKNQPLIATILPKFLKFCENS-------ILIAHNI-SFDMGFLVNQ 505
Query: 233 FSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
++ + N F+DTL LAR + SNL +L++L +Y+ I + HRAM+DV
Sbjct: 506 -TKKHLNLKLNLPFIDTLNLARYCL---DSNL-RYFNLKSLAKYFKISF-ENHHRAMSDV 559
Query: 293 NCLSLILQRL 302
I Q+L
Sbjct: 560 LITKTIFQQL 569
>gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88]
gi|32469700|sp|Q895K2.1|DPO3_CLOTE RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88]
Length = 1427
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 27/202 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDMVC 186
+VFDIETTGFS +N++IIEI + G+ + T VNP+R +P + GI MV
Sbjct: 414 VVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYMV- 472
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC-SYEVPNNWL 245
D P++E+++P + +++ + VAHNA +FDV F+ C + + N
Sbjct: 473 -KDAPKIEEVLPKFIDFIEDS-------ILVAHNA-NFDVSFIK---KNCKDFGIHFNNP 520
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
+DT+ L + L + L + ++ GIPL+ + HRA+ D IL + D
Sbjct: 521 ILDTIPLCKFLYPE-----LKRYKLNVVAKHLGIPLL-NHHRAVEDAKTTGDILLKAFED 574
Query: 306 LK----LSLCDLIERGFTPSDL 323
LK ++L L E F D+
Sbjct: 575 LKDKEIMNLNMLNEEYFKNQDI 596
>gi|332799219|ref|YP_004460718.1| DNA polymerase III subunit alpha [Tepidanaerobacter acetatoxydans
Re1]
gi|332696954|gb|AEE91411.1| DNA polymerase III, alpha subunit [Tepidanaerobacter acetatoxydans
Re1]
Length = 1422
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 93/183 (50%), Gaps = 25/183 (13%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K VT +V DIETTG +N+ IIEI +L E F + + P+R +P ++ GIT
Sbjct: 404 KDVTFVVVDIETTGLCFDNDEIIEIGAVKILNNEIIDRFSSFIKPQRLIPTNIINLTGIT 463
Query: 182 TDMV--CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
DM+ +P +E ++P + ++ G +FVAHNA FD F+ E S+
Sbjct: 464 NDMLKTARP----IEKVLPSFMEFL-------GDGVFVAHNAE-FDSGFIRREASKLGIP 511
Query: 240 VPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
NN L DTL LAR + S L + L L + I + GS HRA+ D +LIL
Sbjct: 512 FKNNIL--DTLALARIIF----SKLKNH-RLDTLAKELNIKM-GSHHRAIDDAKTAALIL 563
Query: 300 QRL 302
Q L
Sbjct: 564 QEL 566
>gi|348171463|ref|ZP_08878357.1| hypothetical protein SspiN1_13234 [Saccharopolyspora spinosa NRRL
18395]
Length = 572
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 18/214 (8%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNA--HVHGITTD 183
VT +V D+ETTG R+ + + EI + GGE F TLVNP R +P + + GIT
Sbjct: 23 VTFVVVDLETTGGDRDGDAVTEIGAVKVRGGEVLGEFATLVNPDRGIPPSIVSITGITEA 82
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV D PR + ++P L + + G +L VAHNA FD+ FL + R P
Sbjct: 83 MVV--DAPRFDAVLPAFLEFCR------GSVL-VAHNA-PFDIGFLRSNCERLGLRWPKP 132
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+ +DT+ L+R ++ + +L + +P+ + A A V+ L +L+R+
Sbjct: 133 QV-VDTVRLSRRVLTRDETPNHKLGTLARVLNARTVPVHRALDDARATVDVLHALLERVG 191
Query: 304 FDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
+L DL+ G P + P++++K L
Sbjct: 192 PLGVRTLEDLL--GHLPD--VTPQQRRKRGLADG 221
>gi|291301852|ref|YP_003513130.1| DNA polymerase III subunit epsilon [Stackebrandtia nassauensis DSM
44728]
gi|290571072|gb|ADD44037.1| DNA polymerase III, epsilon subunit [Stackebrandtia nassauensis DSM
44728]
Length = 578
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 100/196 (51%), Gaps = 22/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG + + I EI + GGE + TLVNP + + + GIT
Sbjct: 24 VTFMVVDLETTGVASDACSITEIGAVKVRGGEVLGEYATLVNPGEAIDARISALTGITDA 83
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV D P +E+++P L + + ++VAHNA FDV FL + ++ P
Sbjct: 84 MVA--DAPAIEEVLPSFLEFARG-------AVWVAHNA-PFDVGFLRSACAQAELPWPRP 133
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+ +DT+ LAR L+ S +P+K L L Y+G V +HRA+ D V+ L +L
Sbjct: 134 QV-VDTVVLARRLVDR--SEVPNK-RLSTLARYFGA-RVKPSHRALDDARATVDVLHALL 188
Query: 300 QRLTFDLKLSLCDLIE 315
+RL L+ DL +
Sbjct: 189 ERLGTHYVLTDEDLAD 204
>gi|399923801|ref|ZP_10781159.1| DNA polymerase III subunit alpha [Peptoniphilus rhinitidis 1-13]
Length = 1415
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 21/194 (10%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGG-ENSTFQTLVNPKR 170
D E+I+ + +VFDIETTG S N++I EI ++ G F L+NP++
Sbjct: 386 DKEKIVTNFDSNKNYNSYVVFDIETTGLSSRNDKITEIGAVKIVDGIIVDRFSQLINPEK 445
Query: 171 QVPNAHVH--GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
++P V GI+ V + P ++++IP + K + VAHNA+ FD+ F
Sbjct: 446 EIPQVVVDLTGISNAKV--ENEPTIKEVIPKFYEFAKDS-------VLVAHNAK-FDISF 495
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ E+ + + N +DTL LAR M +N+ + +L L + GI LVG AHRA
Sbjct: 496 IRREYKNNNLKF--NHPILDTLVLARATM----TNM-KRFNLGTLCKNLGISLVG-AHRA 547
Query: 289 MADVNCLSLILQRL 302
+ D + + +L
Sbjct: 548 VNDAEATAAMFIKL 561
>gi|110801936|ref|YP_698978.1| DNA polymerase III PolC [Clostridium perfringens SM101]
gi|110682437|gb|ABG85807.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens SM101]
Length = 1449
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 89/174 (51%), Gaps = 21/174 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS +N++IIEI L GE +F T V+PK +P + IT +MV
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMVN 495
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P +++++P + +V G + VAHNA +FDV F+ + N
Sbjct: 496 GQ--PTIDEVLPKFMEFV-------GNSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP--V 543
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
MDT+ LAR L KV L + ++ GI L + HRA+ D + IL+
Sbjct: 544 MDTVPLARYLYPD-----LKKVKLNLVAKHLGISL-ENHHRAVDDAKATAEILK 591
>gi|383820044|ref|ZP_09975304.1| hypothetical protein MPHLEI_11974 [Mycobacterium phlei RIVM601174]
gi|383335864|gb|EID14285.1| hypothetical protein MPHLEI_11974 [Mycobacterium phlei RIVM601174]
Length = 620
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 102/219 (46%), Gaps = 29/219 (13%)
Query: 128 TAIVFDIETTGFSRENER---IIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GIT 181
T +V D+ETTG ER I EI + GGE TLV+P R +P V GIT
Sbjct: 25 TFVVVDLETTGGRASGERADAITEIGAVKVRGGEVLGELATLVDPGRDIPPQIVALTGIT 84
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
T MVC D PR+E ++P L + + + VAHNA FD+ FL RC P
Sbjct: 85 TAMVC--DAPRIESVLPAFLEFSRG-------AVLVAHNA-GFDIGFLRAAAERCQLPWP 134
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSL 297
+ T+ LAR ++ PS V L L +G + HRA+ D V+ L
Sbjct: 135 RPPVLC-TVKLARRVLTR--DEAPS-VRLAELARLFGASTTPT-HRALDDARATVDVLHG 189
Query: 298 ILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVS 336
+++R+ +L +L R + P + P +++ L S
Sbjct: 190 LIERVGNQGVHTLREL--RAYLPD--VTPAQRRNRHLAS 224
>gi|445059817|ref|YP_007385221.1| DNA polymerase III PolC [Staphylococcus warneri SG1]
gi|443425874|gb|AGC90777.1| DNA polymerase III PolC [Staphylococcus warneri SG1]
Length = 1438
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 21/191 (10%)
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH 178
++DL K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++
Sbjct: 414 DRDL-KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHEKLSETIIN 472
Query: 179 --GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC 236
IT DM+ D P +ED++ +V G +FVAHNA SFD+ F+ + R
Sbjct: 473 LTHITDDMLT--DAPEIEDVLTDFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERL 522
Query: 237 SYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
+ N + +DTL L+R + G K L L + YG+ L HRA+ D +
Sbjct: 523 GFGPSTNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVDLT-QHHRAIYDTEATA 575
Query: 297 LILQRLTFDLK 307
I ++ +K
Sbjct: 576 YIFIKMVQQMK 586
>gi|18310673|ref|NP_562607.1| DNA polymerase III PolC [Clostridium perfringens str. 13]
gi|168214476|ref|ZP_02640101.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens CPE str. F4969]
gi|24418366|sp|Q8XJR3.1|DPO3_CLOPE RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|18145354|dbj|BAB81397.1| DNA polymerase III alpha subunit [Clostridium perfringens str. 13]
gi|170714031|gb|EDT26213.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens CPE str. F4969]
Length = 1449
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 89/174 (51%), Gaps = 21/174 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS +N++IIEI L GE +F T V+PK +P + IT +MV
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMVN 495
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P +++++P + +V G + VAHNA +FDV F+ + N
Sbjct: 496 GQ--PTIDEVLPKFMEFV-------GNSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP--V 543
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
MDT+ LAR L KV L + ++ GI L + HRA+ D + IL+
Sbjct: 544 MDTVPLARYLYPD-----LKKVKLNLVAKHLGISL-ENHHRAVDDAKATAEILK 591
>gi|329942731|ref|ZP_08291510.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydophila psittaci Cal10]
gi|332287328|ref|YP_004422229.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|384450477|ref|YP_005663077.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|384451482|ref|YP_005664080.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 01DC11]
gi|384452455|ref|YP_005665052.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 08DC60]
gi|384453431|ref|YP_005666027.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci C19/98]
gi|384454410|ref|YP_005667005.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 02DC15]
gi|392376569|ref|YP_004064347.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci RD1]
gi|406592232|ref|YP_006739412.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci CP3]
gi|406594865|ref|YP_006741541.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci MN]
gi|407453903|ref|YP_006733011.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci 84/55]
gi|407455216|ref|YP_006734107.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci GR9]
gi|407456599|ref|YP_006735172.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci VS225]
gi|407457950|ref|YP_006736255.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci WS/RT/E30]
gi|407460568|ref|YP_006738343.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci WC]
gi|410858352|ref|YP_006974292.1| DNA polymerase III, epsilon chain [Chlamydia psittaci 01DC12]
gi|449071029|ref|YP_007438109.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci Mat116]
gi|313847912|emb|CBY16907.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci RD1]
gi|325506611|gb|ADZ18249.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|328814991|gb|EGF84980.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydophila psittaci Cal10]
gi|328914571|gb|AEB55404.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC]
gi|334692212|gb|AEG85431.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci C19/98]
gi|334693192|gb|AEG86410.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 01DC11]
gi|334694167|gb|AEG87384.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 02DC15]
gi|334695144|gb|AEG88360.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 08DC60]
gi|405780662|gb|AFS19412.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci 84/55]
gi|405781759|gb|AFS20508.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci GR9]
gi|405783297|gb|AFS22045.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci MN]
gi|405783860|gb|AFS22607.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci VS225]
gi|405785585|gb|AFS24331.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci WS/RT/E30]
gi|405787488|gb|AFS26232.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci WC]
gi|405788104|gb|AFS26847.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci CP3]
gi|410811247|emb|CCO01893.1| DNA polymerase III, epsilon chain [Chlamydia psittaci 01DC12]
gi|449039537|gb|AGE74961.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci Mat116]
Length = 228
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 99/214 (46%), Gaps = 20/214 (9%)
Query: 126 LVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTD 183
+ T I +D ETTG + +RIIEIA + E +F T VNP+ +P + +HGITT
Sbjct: 1 MTTLIFYDTETTGTQIDKDRIIEIAAYNHKTKE--SFVTYVNPEIPIPEEASKIHGITTS 58
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
V P+ + + G + VAHN SFD P L E R + P +
Sbjct: 59 TVIS--APKFPEAYKHFCDFC------GNEAVLVAHNNDSFDFPLLEKECRRHALP-PLS 109
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+D+L A++ +LP K +LQ LR+ YG AHRA+ DV L + L
Sbjct: 110 LKTIDSLKWAQKYR----PDLP-KHNLQYLRQVYGF-AENQAHRALDDVITLHNVFSALI 163
Query: 304 FDLKL-SLCDLIERGFTPSDLINPKKKKKSKLVS 336
DL + L+E + P P K K K +S
Sbjct: 164 GDLSAEQVLALMEESYHPKTFKMPFGKYKGKPLS 197
>gi|417643576|ref|ZP_12293618.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus warneri VCU121]
gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU121]
Length = 1438
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 21/191 (10%)
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH 178
++DL K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++
Sbjct: 414 DRDL-KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHEKLSETIIN 472
Query: 179 --GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC 236
IT DM+ D P +ED++ +V G +FVAHNA SFD+ F+ + R
Sbjct: 473 LTHITDDMLT--DAPEIEDVLTDFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERL 522
Query: 237 SYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
+ N + +DTL L+R + G K L L + YG+ L HRA+ D +
Sbjct: 523 GFGPSTNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVDLT-QHHRAIYDTEATA 575
Query: 297 LILQRLTFDLK 307
I ++ +K
Sbjct: 576 YIFIKMVQQMK 586
>gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens C str. JGS1495]
gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens C str. JGS1495]
Length = 1449
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 89/174 (51%), Gaps = 21/174 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS +N++IIEI L GE +F T V+PK +P + IT +MV
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMVN 495
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P +++++P + +V G + VAHNA +FDV F+ + N
Sbjct: 496 GQ--PTIDEVLPKFMEFV-------GDSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP--V 543
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
MDT+ LAR L KV L + ++ GI L + HRA+ D + IL+
Sbjct: 544 MDTVPLARYLYPD-----LKKVKLNLVAKHLGISL-ENHHRAVDDAKATAEILK 591
>gi|226949776|ref|YP_002804867.1| DNA polymerase III PolC [Clostridium botulinum A2 str. Kyoto]
gi|226841257|gb|ACO83923.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum A2 str. Kyoto]
Length = 1432
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 104/209 (49%), Gaps = 24/209 (11%)
Query: 99 KTEISKIQRIQHYDIEQ---IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLL 155
K+ I I I+ Y ++ I+++ D T +VFD+ETTGFS +N++IIEI +
Sbjct: 385 KSNIKVIYGIEAYLVDDGVPIVSKAGDKTIEDTFVVFDLETTGFSSKNDKIIEIGAVKIE 444
Query: 156 GGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGG 212
G+ F VNP+R +P+ + IT DMV D ++ ++P + ++ G
Sbjct: 445 KGKIVDRFSEFVNPERSIPDKITELTSITDDMV--DDKEAIDKILPRFIEFI-------G 495
Query: 213 YILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQA 272
+ VAHNA +FDV F+ E N+ MDT+TL+R L + L
Sbjct: 496 NSVVVAHNA-AFDVSFINKNCKDLKIEFKNS--VMDTVTLSRFLFPE-----LKRYKLNV 547
Query: 273 LREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ ++ GI L + HRA+ D + IL +
Sbjct: 548 IAKHLGISL-ENHHRAVDDAKATADILLK 575
>gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens NCTC 8239]
gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens NCTC 8239]
Length = 1449
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 89/174 (51%), Gaps = 21/174 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS +N++IIEI L GE +F T V+PK +P + IT +MV
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMVN 495
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P +++++P + +V G + VAHNA +FDV F+ + N
Sbjct: 496 GQ--PTIDEVLPKFMEFV-------GDSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP--V 543
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
MDT+ LAR L KV L + ++ GI L + HRA+ D + IL+
Sbjct: 544 MDTVPLARYLYPD-----LKKVKLNLVAKHLGISL-ENHHRAVDDAKATAEILK 591
>gi|152975987|ref|YP_001375504.1| DNA polymerase III subunit epsilon [Bacillus cytotoxicus NVH
391-98]
gi|152024739|gb|ABS22509.1| DNA polymerase III, epsilon subunit [Bacillus cytotoxicus NVH
391-98]
Length = 299
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 22/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF N+RII++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFHPYNDRIIQVAAVRYRNHELADQFVSFVNPERSIPSRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +++++P+ L ++ G VAHNA SFD+ FL + SR PNN +
Sbjct: 70 -SDAPTVQEVLPLFLAFL-------GNDTIVAHNA-SFDMRFLKSNMSRFQLGEPNNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD-VNCLSLILQ 300
+DT+ LA++ MK + L+ L+ GI L S+H A+ D + C ++ Q
Sbjct: 120 IDTVLLAKKYMKHAPN-----FKLETLKRMLGIRL--SSHNALDDCITCAAVYQQ 167
>gi|326791606|ref|YP_004309427.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427]
gi|326542370|gb|ADZ84229.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM
5427]
Length = 1468
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 107/217 (49%), Gaps = 28/217 (12%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D+++++ +K+ + + + +VFD+ETTGFS + RIIEI ++GG+ TF VNPK
Sbjct: 425 DLKEVVTNSKNQSLMESYVVFDLETTGFSPKMNRIIEIGAVKVVGGQIVDTFSEFVNPKV 484
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + GI MV + + +E L+P L + + + VAHNA FD+ F
Sbjct: 485 PIPYQIEKLTGINDRMVMEAET--IEVLLPQFLAFCEG-------CVMVAHNA-DFDMSF 534
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ E + + ++ MDT+ LAR LM G+ L + ++ I L + HRA
Sbjct: 535 I--EANAKEQGLAADFTVMDTVALARILMPHLGN-----FKLNNVAKHLDISL-ENHHRA 586
Query: 289 MADVNCLSLILQRLTFDLKLSLCDLIERGFTPSDLIN 325
+ D I R L+ E+G T D IN
Sbjct: 587 VDDATATGEIFVRFIEMLQ-------EKGVTTLDAIN 616
>gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
butyricum 5521]
gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
butyricum 5521]
gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 1450
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNA--HVHGITTDM 184
T +VFDIETTGFS N++IIEI + GE F VNP+R +P + I DM
Sbjct: 436 TYVVFDIETTGFSPVNDKIIEIGAVKIKNGEVIDNFSHFVNPERSIPYVITELTSINNDM 495
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D +E L+P + + + VAHNA +FD F+ + N+
Sbjct: 496 V--RDAETIEILLPKFMEFCADS-------VLVAHNA-AFDTGFIKKNCRDLGIDF--NY 543
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
MDT+ LAR L KV L + ++ GI L + HRA+ D C + IL +
Sbjct: 544 SIMDTVPLARFLCPD-----LKKVKLNLVAKHLGISL-DNHHRAVDDAKCTAEILLKFFT 597
Query: 305 DLK 307
LK
Sbjct: 598 MLK 600
>gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124]
gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens B str. ATCC 3626]
gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens ATCC 13124]
gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens B str. ATCC 3626]
Length = 1449
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 89/174 (51%), Gaps = 21/174 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS +N++IIEI L GE +F T V+PK +P + IT +MV
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMVN 495
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P +++++P + +V G + VAHNA +FDV F+ + N
Sbjct: 496 GQ--PTIDEVLPKFMEFV-------GDSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP--V 543
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
MDT+ LAR L KV L + ++ GI L + HRA+ D + IL+
Sbjct: 544 MDTVPLARYLYPD-----LKKVKLNLVAKHLGISL-ENHHRAVDDAKATAEILK 591
>gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus warneri L37603]
gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus warneri L37603]
Length = 1438
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 21/191 (10%)
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH 178
++DL K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++
Sbjct: 414 DRDL-KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHEKLSETIIN 472
Query: 179 --GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC 236
IT DM+ D P +ED++ +V G +FVAHNA SFD+ F+ + R
Sbjct: 473 LTHITDDMLT--DAPEIEDVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERL 522
Query: 237 SYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
+ N + +DTL L+R + G K L L + YG+ L HRA+ D +
Sbjct: 523 GFGPSTNGV-IDTLELSRTINTDYG-----KHGLNFLAKKYGVDLT-QHHRAIYDTEATA 575
Query: 297 LILQRLTFDLK 307
I ++ +K
Sbjct: 576 YIFIKMVQQMK 586
>gi|209964314|ref|YP_002297229.1| exonuclease [Rhodospirillum centenum SW]
gi|209957780|gb|ACI98416.1| exonuclease, putative [Rhodospirillum centenum SW]
Length = 699
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 90/179 (50%), Gaps = 24/179 (13%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLGGE---NSTFQTLVNPKRQVP--NAHVHGITTD 183
+VFD ETTG + + + ++ +A ++ G TFQTL+NP R +P +A +HGIT
Sbjct: 507 VVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINPGRAIPAASAAIHGITDA 566
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV + PR E ++P +V G + VAHNA +FD+ FL + + V +
Sbjct: 567 MVA--EAPRAEAVLPPFRAFV-------GDAVLVAHNA-AFDLKFL--RLKQRAAGVRFD 614
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DT+ L+R++ G + SL L GI LV H AM D + I RL
Sbjct: 615 GPVLDTMILSRQIQGDHGEH-----SLDGLAARLGIGLV-DRHSAMGDSLMTAAIFLRL 667
>gi|441516128|ref|ZP_20997879.1| DNA polymerase III subunit epsilon [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441456999|dbj|GAC55840.1| DNA polymerase III subunit epsilon [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 599
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 92/180 (51%), Gaps = 22/180 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG S + + I EI + GG+ F TLV+P R +P V GITT M
Sbjct: 32 TLVVVDLETTGGSAQQDAITEIGAVKIRGGQVLGEFATLVDPGRPIPPQIVSLTGITTAM 91
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFL--INEFSRCSYEVPN 242
V D PR+E+++P + + G IL VAHNAR FD+ FL E + ++ P
Sbjct: 92 VH--DAPRIEEVLPAFFEFAR------GAIL-VAHNAR-FDLGFLRRAAERQQLAWPFPA 141
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ + T+ +AR ++ P+ V L AL E + + V HRA+ D + RL
Sbjct: 142 H---LCTVVMARRILSQ--QEAPT-VKLSALAELFDV-AVKPTHRALDDARATVDVFHRL 194
>gi|422346361|ref|ZP_16427275.1| DNA polymerase III polC-type [Clostridium perfringens WAL-14572]
gi|373225906|gb|EHP48233.1| DNA polymerase III polC-type [Clostridium perfringens WAL-14572]
Length = 1449
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 89/174 (51%), Gaps = 21/174 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS +N++IIEI L GE +F T V+PK +P + IT +MV
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMVN 495
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P +++++P + +V G + VAHNA +FDV F+ + N
Sbjct: 496 GQ--PTIDEVLPKFMEFV-------GDSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP--V 543
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
MDT+ LAR L KV L + ++ GI L + HRA+ D + IL+
Sbjct: 544 MDTVPLARYLYPD-----LKKVKLNLVAKHLGISL-ENHHRAVDDAKATAEILK 591
>gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens E str. JGS1987]
gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens E str. JGS1987]
Length = 1449
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 89/174 (51%), Gaps = 21/174 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS +N++IIEI L GE +F T V+PK +P + IT +MV
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMVN 495
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P +++++P + +V G + VAHNA +FDV F+ + N
Sbjct: 496 GQ--PTIDEVLPKFMEFV-------GDSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP--V 543
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
MDT+ LAR L KV L + ++ GI L + HRA+ D + IL+
Sbjct: 544 MDTVPLARYLYPD-----LKKVKLNLVAKHLGISL-ENHHRAVDDAKATAEILK 591
>gi|407459193|ref|YP_006737296.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci M56]
gi|405786048|gb|AFS24793.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci M56]
Length = 228
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 99/214 (46%), Gaps = 20/214 (9%)
Query: 126 LVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTD 183
+ T I +D ETTG + +RIIEIA + E +F T VNP+ +P + +HGITT
Sbjct: 1 MTTLIFYDTETTGTQIDKDRIIEIAAYNHKTKE--SFVTYVNPEIPIPEEASKIHGITTS 58
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
V P+ + + G + VAHN SFD P L E R + P +
Sbjct: 59 TVIS--APKFPEAYKDFCDFC------GNQAVLVAHNNDSFDFPLLEKECRRHALP-PLS 109
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+D+L A++ +LP K +LQ LR+ YG AHRA+ DV L + L
Sbjct: 110 LKTIDSLKWAQKYR----PDLP-KHNLQYLRQVYGF-AENQAHRALDDVITLHNVFSALI 163
Query: 304 FDLKL-SLCDLIERGFTPSDLINPKKKKKSKLVS 336
DL + L+E + P P K K K +S
Sbjct: 164 GDLSAEQVLALMEDSYHPKTFKMPFGKYKGKPLS 197
>gi|225572667|ref|ZP_03781422.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
10507]
gi|225039967|gb|EEG50213.1| DNA polymerase III, alpha subunit, Gram-positive type [Blautia
hydrogenotrophica DSM 10507]
Length = 1464
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 29/280 (10%)
Query: 33 SRRYGHSPSFKLLCSKTYGLEDQDSYTE--RWSRRRITTGTEGSKKTIQSHKLKNIKFEA 90
S R +SP ++ + D D T+ +R G +G I H + EA
Sbjct: 340 SARQDNSPVKRIELHCHTKMSDMDGVTDAKELVKRAYEWGHKGI--AITDHGVVQAFPEA 397
Query: 91 TSTTINVNK-TEISKIQRIQHY---DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERI 146
T N+ K + + ++ Y D++ ++ K + + +VFD+ETTGFS + +I
Sbjct: 398 FHETWNIPKDADFKVLYGMEAYLVDDMKGMVVNGKGQSLQGSFVVFDLETTGFSPMSCQI 457
Query: 147 IEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHY 203
IEI + G+ F T VNPK +P + I MV D P +E+++P L +
Sbjct: 458 IEIGAVRVEDGKIVERFSTFVNPKVPIPFRIEQLTSINDSMVM--DAPVIEEVLPKFLEF 515
Query: 204 VKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSN 263
+ VAHNA FD+ F+ EF+ +P+++ ++DT+ +AR L+ S
Sbjct: 516 CSG-------AVMVAHNA-DFDMSFV--EFNCDRLGIPHDFTYIDTVGMARFLLPS---- 561
Query: 264 LPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
++ L + + IPL G HRA+ D C + I +
Sbjct: 562 -LNRFKLDTVAKALEIPL-GHHHRAVDDAACTADIFVKFV 599
>gi|148380379|ref|YP_001254920.1| DNA polymerase III PolC [Clostridium botulinum A str. ATCC 3502]
gi|153932951|ref|YP_001384598.1| DNA polymerase III PolC [Clostridium botulinum A str. ATCC 19397]
gi|153935522|ref|YP_001388114.1| DNA polymerase III PolC [Clostridium botulinum A str. Hall]
gi|148289863|emb|CAL83971.1| DNA polymerase III PolC-type [Clostridium botulinum A str. ATCC
3502]
gi|152928995|gb|ABS34495.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum A str. ATCC 19397]
gi|152931436|gb|ABS36935.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum A str. Hall]
Length = 1432
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 24/209 (11%)
Query: 99 KTEISKIQRIQHYDIEQ---IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLL 155
K I I I+ Y ++ I+++ D T +VFD+ETTGFS +N++IIEI +
Sbjct: 385 KGNIKVIYGIEAYLVDDGVPIVSKAGDKTIEDTFVVFDLETTGFSSKNDKIIEIGAVKIE 444
Query: 156 GGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGG 212
G+ F VNP+R +P+ + IT DMV D ++ ++P + ++ G
Sbjct: 445 KGKIVDRFSEFVNPERSIPDKITELTSITDDMV--DDKEAIDKILPRFIDFI-------G 495
Query: 213 YILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQA 272
+ VAHNA SFDV F+ E N+ MDT+TL+R L + L
Sbjct: 496 DSVVVAHNA-SFDVSFINKNCKDLKIEFENS--VMDTVTLSRFLFPE-----LKRYKLNV 547
Query: 273 LREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ ++ GI L + HRA+ D + IL +
Sbjct: 548 IAKHLGISL-ENHHRAVDDAKATADILLK 575
>gi|154484752|ref|ZP_02027200.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC
27560]
gi|149734600|gb|EDM50517.1| DNA polymerase III, alpha subunit, Gram-positive type [Eubacterium
ventriosum ATCC 27560]
Length = 1474
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 30/211 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFD+ETTGFS ++++IIEI + G+ F T VNP+ +P + I +MV
Sbjct: 410 VVFDLETTGFSAKSDKIIEIGAVKVENGKIIDRFSTFVNPEIPIPFRIEKLTSINDEMVI 469
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P++E+++P + + K + VAHN+ FD+ F+ R E ++
Sbjct: 470 --DAPKIEEILPQFMEFCKDS-------VMVAHNS-DFDMSFIEANCKRQDLEC--DFTV 517
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+DT+ ++R L+ G + L + + GI L HRA+ D C +LI
Sbjct: 518 IDTVAMSRYLIIGLG-----RYKLDNVAKALGIVL-DHHHRAVDDAECTALIF------- 564
Query: 307 KLSLCDLIE-RGFTPSDLINPKKKKKSKLVS 336
L LC ++E +G D +N + K+ L+
Sbjct: 565 -LKLCKMLEGKGIDNLDELNRQGKQSKNLID 594
>gi|256825435|ref|YP_003149395.1| hypothetical protein Ksed_16150 [Kytococcus sedentarius DSM 20547]
gi|256688828|gb|ACV06630.1| exonuclease, DNA polymerase III, epsilon subunit family [Kytococcus
sedentarius DSM 20547]
Length = 584
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 91/193 (47%), Gaps = 29/193 (15%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTD 183
VT +VFD+ETTG S + I E + GGE FQTLV P +P + GITT
Sbjct: 25 VTFVVFDLETTGTSSADSEITEFGAVKVRGGEVVGEFQTLVRPAAGIPPYIQVLTGITTA 84
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P +E ++P L +V G + VAHNAR FD F+ R P N
Sbjct: 85 MVSA--APSIEQVLPNFLEFV-------GDAVLVAHNAR-FDTAFVRRACERTGRPAPGN 134
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+ +DT+ LAR+L+ +P+ L L Y+ S HRA+ D R T
Sbjct: 135 PV-LDTVHLARQLLPR--PEVPNH-KLSTLAAYFRAETTPS-HRALDDA--------RAT 181
Query: 304 FDLKLSLCDLIER 316
D+ L LIER
Sbjct: 182 VDV---LHGLIER 191
>gi|56751271|ref|YP_171972.1| hypothetical protein syc1262_c [Synechococcus elongatus PCC 6301]
gi|81299062|ref|YP_399270.1| exonuclease [Synechococcus elongatus PCC 7942]
gi|56686230|dbj|BAD79452.1| unknown protein [Synechococcus elongatus PCC 6301]
gi|81167943|gb|ABB56283.1| Exonuclease [Synechococcus elongatus PCC 7942]
Length = 256
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 26/192 (13%)
Query: 110 HYDIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQT--LVN 167
H+ + + LA T V D+ETTGF R+IE+ E FQ L+N
Sbjct: 4 HWRSHDWLTYYRSLAA-ATFTVVDVETTGFKPPQARVIELGILQATLAEGIQFQQAELLN 62
Query: 168 PKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFD 225
P +P A GITTD++ D P E ++P LL +++ + VAHN FD
Sbjct: 63 PGIPIPEAIAQFTGITTDLIATADPP--ESVLPPLLPRLQTG-------ILVAHNL-PFD 112
Query: 226 VPFLINEFSRCSYEV---PNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLV 282
FL E+ + + P L T+ ++R+L+ ++LPS+ SL L +++G P V
Sbjct: 113 YRFLTAEYQQLGLDFERSPTEQLC--TVQMSRQLL----ADLPSR-SLPQLVQHFGFP-V 164
Query: 283 GSAHRAMADVNC 294
G +HRA ADV
Sbjct: 165 GQSHRAAADVEA 176
>gi|334337307|ref|YP_004542459.1| DNA polymerase III subunit epsilon [Isoptericola variabilis 225]
gi|334107675|gb|AEG44565.1| DNA polymerase III, epsilon subunit [Isoptericola variabilis 225]
Length = 578
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 102/218 (46%), Gaps = 26/218 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG E+ I EI + GGE Q+LVNP VP A + GITT
Sbjct: 23 VTFVVVDLETTGGRTEDSGITEIGAVKVRGGEVLGELQSLVNPGHPVPAFVARLTGITTA 82
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + + G +L VAHNA +DV FL R Y P
Sbjct: 83 MVAT--APDLALVLPSFLEFAR------GSVL-VAHNA-PYDVGFLRAACERLGYPWP-G 131
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+ +DT+ LAR ++ + +L AL P HRA+AD V+ L +L
Sbjct: 132 FRVVDTVPLARRVVTRDEAPNHKLSTLAALFRARTTP----QHRALADARATVDVLHGLL 187
Query: 300 QRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
+RL L DL T +D + P+ ++K L
Sbjct: 188 ERLAPLGVTHLEDLA----TAADPVPPEVRRKRHLADG 221
>gi|237795859|ref|YP_002863411.1| DNA polymerase III PolC [Clostridium botulinum Ba4 str. 657]
gi|229260819|gb|ACQ51852.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum Ba4 str. 657]
Length = 1432
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 24/209 (11%)
Query: 99 KTEISKIQRIQHYDIEQ---IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLL 155
K+ I I I+ Y ++ I+++ D T +VFD+ETTGFS +N++IIEI +
Sbjct: 385 KSNIKVIYGIEAYLVDDGVPIVSKAGDKTIEDTFVVFDLETTGFSSKNDKIIEIGAVKIE 444
Query: 156 GGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGG 212
G+ F VNPKR +P+ + IT DMV D ++ ++P + ++ G
Sbjct: 445 KGKIVDRFSEFVNPKRIIPDKITELTSITDDMV--QDKETIDKILPRFIDFI-------G 495
Query: 213 YILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQA 272
+ VAHNA FDV F+ E N+ MDT+TL+R L + L
Sbjct: 496 DSVVVAHNA-DFDVSFINKNCKDLKIEFENS--VMDTVTLSRFLFPE-----LKRYKLNV 547
Query: 273 LREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ ++ GI L + HRA+ D + IL +
Sbjct: 548 IAKHLGISL-ENHHRAVDDAKATADILLK 575
>gi|168184630|ref|ZP_02619294.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum Bf]
gi|182672306|gb|EDT84267.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum Bf]
Length = 1432
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 24/209 (11%)
Query: 99 KTEISKIQRIQHYDIEQ---IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLL 155
K+ I I I+ Y ++ I+++ D T +VFD+ETTGFS +N++IIEI +
Sbjct: 385 KSNIKVIYGIEAYLVDDGVPIVSKAGDKTIEDTFVVFDLETTGFSSKNDKIIEIGAVKIE 444
Query: 156 GGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGG 212
G+ F VNPKR +P+ + IT DMV D ++ ++P + ++ G
Sbjct: 445 KGKIVDRFSEFVNPKRIIPDKITELTSITDDMV--QDKETIDKILPRFIDFI-------G 495
Query: 213 YILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQA 272
+ VAHNA FDV F+ E N+ MDT+TL+R L + L
Sbjct: 496 DSVVVAHNA-DFDVSFINKNCKDLKIEFENS--VMDTVTLSRFLFPE-----LKRYKLNV 547
Query: 273 LREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ ++ GI L + HRA+ D + IL +
Sbjct: 548 IAKHLGISL-ENHHRAVDDAKATADILLK 575
>gi|377571758|ref|ZP_09800861.1| DNA polymerase III epsilon subunit [Gordonia terrae NBRC 100016]
gi|377530893|dbj|GAB46026.1| DNA polymerase III epsilon subunit [Gordonia terrae NBRC 100016]
Length = 620
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 91/181 (50%), Gaps = 24/181 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHV--HGITTDM 184
T +V D+ETTG +RI EI + GGE F TLV+P R +P V GITT M
Sbjct: 63 TLVVVDLETTGSDPARDRITEIGAVKIRGGEIIGEFATLVDPGRPIPPQIVTLTGITTAM 122
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D PR+E ++P + + G IL VAHNAR FD+ FL R ++P W
Sbjct: 123 LT--DAPRIESVLPSFFEFAR------GSIL-VAHNAR-FDMGFLRQNAIR--LQLP--W 168
Query: 245 LF---MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
F + T+T+AR ++ P+ V L AL + + + V HRA+ D + R
Sbjct: 169 TFGLTLCTVTMARRILTR--DEAPT-VKLSALADLFDV-AVRPTHRALDDARATVEVFHR 224
Query: 302 L 302
L
Sbjct: 225 L 225
>gi|347531724|ref|YP_004838487.1| DNA polymerase III subunit alpha [Roseburia hominis A2-183]
gi|345501872|gb|AEN96555.1| DNA polymerase III, alpha subunit [Roseburia hominis A2-183]
Length = 1507
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 28/227 (12%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEI-AFQDLLGGENSTFQTLVNPKR 170
D++ II ++K + + +VFD+ETTG S + +IIEI A + + G F T VNP+
Sbjct: 467 DLKDIIVDSKGQSLNDSYVVFDLETTGLSPDKNKIIEIGAVKVVDGAITERFSTFVNPEV 526
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + I DMV D PR+E+++P + + + + VAHNA FD F
Sbjct: 527 PIPYNIEQLTSIKDDMVL--DAPRIEEILPEFMKFCEG-------TVMVAHNAE-FDTGF 576
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ R +P ++ DT+ LAR L+ ++ L + + G+ L HRA
Sbjct: 577 IRKNCERMG--LPFDFTIADTVALARILLPQ-----LNRFKLDTVAKAVGVSL-DHHHRA 628
Query: 289 MADVNCLSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLV 335
+ D C + I + + L ERG D +N +LV
Sbjct: 629 VDDAACTAEIFVKF-------IEMLHERGMETLDDVNQMGATSPELV 668
>gi|331696575|ref|YP_004332814.1| DNA polymerase III subunit epsilon [Pseudonocardia dioxanivorans
CB1190]
gi|326951264|gb|AEA24961.1| DNA polymerase III, epsilon subunit [Pseudonocardia dioxanivorans
CB1190]
Length = 586
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 84/179 (46%), Gaps = 18/179 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTD 183
VT +V D+ETTG S N I EI + GGE TLV+P VP V GITT
Sbjct: 29 VTFVVLDLETTGGSSANHSITEIGAVKVRGGEVLGELATLVDPGTGVPPGVVALTGITTA 88
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV PR+ ++P LL ++ GG +L VAHNA FD FL R P
Sbjct: 89 MVT--GAPRLAQVLPTLLEFM------GGAVL-VAHNA-PFDAGFLRAACERHDRRWPRP 138
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T LAR ++ + PS V L AL +G HRA+AD +L RL
Sbjct: 139 -PQLCTARLARAVLSR--AEAPS-VRLGALARLFGT-ATQPTHRALADARATVEVLHRL 192
>gi|269956792|ref|YP_003326581.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM
15894]
gi|269305473|gb|ACZ31023.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica
DSM 15894]
Length = 584
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 95/214 (44%), Gaps = 18/214 (8%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG + I EI + GGE FQ+LVNP R+VP A + GITT
Sbjct: 31 VTFVVVDLETTGTRTTDSGITEIGAVKVRGGEVLGEFQSLVNPGREVPAFVARLTGITTA 90
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P ++ ++P L + + VAHNA FDV FL + Y P
Sbjct: 91 MVST--APSIDLVLPSFLEWAHD-------CVLVAHNA-PFDVGFLKAAAAGLGYPWP-G 139
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+ +DT+ LAR ++ + +L L P HRA+AD +L L
Sbjct: 140 FPVVDTVPLARRVVPKDEAPNHKLATLAHLFRARVTP----EHRALADARATVDVLHGLL 195
Query: 304 FDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L +E T +D + P +KK L
Sbjct: 196 DRLGAMGVQHLEDLATAADPVPPDVRKKRHLADG 229
>gi|404215637|ref|YP_006669832.1| Nuclease subunit of the excinuclease complex [Gordonia sp. KTR9]
gi|403646436|gb|AFR49676.1| Nuclease subunit of the excinuclease complex [Gordonia sp. KTR9]
Length = 600
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 91/181 (50%), Gaps = 24/181 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHV--HGITTDM 184
T +V D+ETTG +RI EI + GGE F TLV+P R +P V GITT M
Sbjct: 43 TLVVVDLETTGSDPARDRITEIGAVKIRGGEIIGEFATLVDPGRPIPPQIVTLTGITTAM 102
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D PR+E ++P + + G IL VAHNAR FD+ FL R ++P W
Sbjct: 103 LT--DAPRIESVLPSFFEFAR------GSIL-VAHNAR-FDMGFLRQNAIR--LQLP--W 148
Query: 245 LF---MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
F + T+T+AR ++ P+ V L AL + + + V HRA+ D + R
Sbjct: 149 TFSLSLCTVTMARRILTR--DEAPT-VKLSALADLFDVS-VRPTHRALDDARATVEVFHR 204
Query: 302 L 302
L
Sbjct: 205 L 205
>gi|268316801|ref|YP_003290520.1| DNA polymerase III subunit epsilon [Rhodothermus marinus DSM 4252]
gi|262334335|gb|ACY48132.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
Length = 565
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 102/217 (47%), Gaps = 22/217 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTD 183
V+ +V D ETTG S +RIIE+A + GG F TL+NP R VP + GITT
Sbjct: 6 VSFVVVDTETTG-SGPADRIIELAAVRVQGGRIVERFATLINPGRSVPPFITRLTGITTA 64
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ P ++++P L ++ G + VAHN +FD L E R P N
Sbjct: 65 MLV--GRPSADEVLPDFLDFL-------GDGVLVAHNL-AFDRKMLEAELQRIGLAWPGN 114
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
TL LAR L+ LP+K L L +Y IP V + HRA+ D + +L RL
Sbjct: 115 PALC-TLRLARRLL----PGLPAK-GLDGLIRFYQIP-VENRHRALGDAEATAHVLLRLL 167
Query: 304 FDLKLSL-CDLIERGFTPSDLINPKKKKKSKLVSNQE 339
+ + D +E T P+ K S LV +E
Sbjct: 168 EEARRQYGIDTLEALLTFQQQRYPQYKNASPLVRLRE 204
>gi|225375372|ref|ZP_03752593.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
16841]
gi|225212861|gb|EEG95215.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
16841]
Length = 1512
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 107/218 (49%), Gaps = 30/218 (13%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D++ II ++K + T +VFD+ETTGFS + +IIEI ++GG F T VNP+
Sbjct: 472 DLKDIITDSKGQSLDETFVVFDLETTGFSPDKNKIIEIGAVKVVGGVITDRFSTFVNPEV 531
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + I DMV D P++E+++P + + + + VAHNA FD+ F
Sbjct: 532 PIPFRIEELTSIKDDMVI--DAPKIEEILPEFMKFCEGA-------IMVAHNAE-FDMSF 581
Query: 229 LINEFSRCSYE-VPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHR 287
+ C + + + +DT+ LAR L+ NL ++ L + + + L + HR
Sbjct: 582 IK---KNCKDQGIEREFTIIDTVALARILL----PNL-NRFKLDTVAKALNVSL-ENHHR 632
Query: 288 AMADVNCLSLILQRLTFDLKLSLCDLIERGFTPSDLIN 325
A+ D C + I + LK ERG D +N
Sbjct: 633 AVDDAACTAEIFVKFIEMLK-------ERGMENLDDVN 663
>gi|377564581|ref|ZP_09793896.1| DNA polymerase III epsilon subunit [Gordonia sputi NBRC 100414]
gi|377528158|dbj|GAB39061.1| DNA polymerase III epsilon subunit [Gordonia sputi NBRC 100414]
Length = 617
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG S N+RI EI + GGE F TLV+P +P V GIT M
Sbjct: 50 TLVVVDLETTGGSATNDRITEIGAVKIRGGEVLGEFATLVDPGLPIPPQIVALTGITEAM 109
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D PR+++++P + + + G IL VAHNAR FD+ FL R + W
Sbjct: 110 VY--DAPRIDEVLPSFIEFAR------GSIL-VAHNAR-FDMSFLRQNALRLHLQ----W 155
Query: 245 LFMDTL---TLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
F TL T+AR ++ G + V L AL + + + V HRA+ D +
Sbjct: 156 PFSATLCTVTMARRIL---GRDEAPTVRLSALADLFDV-TVRPTHRALDDARATVEVFHH 211
Query: 302 L 302
L
Sbjct: 212 L 212
>gi|51892851|ref|YP_075542.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
gi|51856540|dbj|BAD40698.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
Length = 958
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 84/170 (49%), Gaps = 25/170 (14%)
Query: 130 IVFDIETTGFSRENERIIEIA---FQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDM 184
+ D+ETTG S E++R+IE+A F+D G E F L++P VP H+ GI M
Sbjct: 7 VAIDVETTGTSPEHDRLIEVAAVRFED--GREIGCFSRLIDPGCPVPQRIQHLTGIHPAM 64
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ PR+E+++P L ++ G + VAHNA FDV FL F+R +P NW
Sbjct: 65 LAGK--PRIEEVVPDLASFL-------GDLPLVAHNA-PFDVAFLQAAFARAGRSLP-NW 113
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNC 294
+ DT LAR + L L L E G+PL HRA D
Sbjct: 114 SY-DTAELARVALP-----LARNHRLATLAELLGLPLE-HHHRAEDDARA 156
>gi|266619696|ref|ZP_06112631.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
gi|288868749|gb|EFD01048.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
Length = 264
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 89/176 (50%), Gaps = 22/176 (12%)
Query: 121 KDLAKLV-TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNA--H 176
K L+K V +VFD+ETTG S + IIEI+ + E TF LVNP+R +P
Sbjct: 49 KRLSKYVDNYVVFDLETTGISAVKDDIIEISALKVKNHEQVETFSRLVNPRRPIPAGATK 108
Query: 177 VHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSR- 235
V+GIT +MV P +E ++P L ++ + + HN +SFD+ FL
Sbjct: 109 VNGITDEMV--QSEPGLEFILPEFLDFIDGE-------ILIGHNIQSFDLLFLNRAADEV 159
Query: 236 CSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
C V N+ F+DTL +AR L+ S+ L L +Y+ I G AHRA D
Sbjct: 160 CRKAVLND--FIDTLFMARALLPG-----LSRHRLTDLADYFKISSEG-AHRAFND 207
>gi|153938397|ref|YP_001391721.1| DNA polymerase III PolC [Clostridium botulinum F str. Langeland]
gi|384462730|ref|YP_005675325.1| DNA polymerase III subunit alpha [Clostridium botulinum F str.
230613]
gi|152934293|gb|ABS39791.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum F str. Langeland]
gi|295319747|gb|ADG00125.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum F str. 230613]
Length = 1432
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 24/209 (11%)
Query: 99 KTEISKIQRIQHYDIEQ---IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLL 155
K I I I+ Y ++ I+++ D T +VFD+ETTGFS +N++IIEI +
Sbjct: 385 KGNIKVIYGIEAYLVDDGVPIVSKAGDKTIEDTFVVFDLETTGFSSKNDKIIEIGAVKIE 444
Query: 156 GGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGG 212
G+ F VNP+R +P+ + IT DMV D ++ ++P + ++ G
Sbjct: 445 KGKIVDRFSEFVNPERSIPDKITELTSITDDMV--DDKEAIDKILPRFIEFI-------G 495
Query: 213 YILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQA 272
+ VAHNA +FDV F+ E N+ MDT+TL+R L + L
Sbjct: 496 NSVVVAHNA-AFDVSFINKNCKDLKIEFKNS--VMDTVTLSRFLFPE-----LKRYKLNV 547
Query: 273 LREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ ++ GI L + HRA+ D + IL +
Sbjct: 548 IAKHLGISL-ENHHRAVDDAKATADILLK 575
>gi|424827577|ref|ZP_18252364.1| DNA polymerase III PolC [Clostridium sporogenes PA 3679]
gi|365980017|gb|EHN16058.1| DNA polymerase III PolC [Clostridium sporogenes PA 3679]
Length = 1432
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 24/209 (11%)
Query: 99 KTEISKIQRIQHYDIEQ---IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLL 155
K I I I+ Y ++ I+++ D T +VFD+ETTGFS +N++IIEI +
Sbjct: 385 KGNIKVIYGIEAYLVDDGVPIVSKAGDKTIEDTFVVFDLETTGFSSKNDKIIEIGAVKIE 444
Query: 156 GGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGG 212
G+ F VNP+R +P + IT DMV D ++ ++P + ++ G
Sbjct: 445 KGKIVDRFSEFVNPERSIPEKITELTSITDDMV--EDKEAIDKILPRFIEFI-------G 495
Query: 213 YILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQA 272
+ VAHNA SFDV F+ E N+ MDT+TL+R L + L
Sbjct: 496 DSVVVAHNA-SFDVSFINKNCKDLKIEFKNS--VMDTVTLSRFLFPE-----LKRYKLNV 547
Query: 273 LREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ ++ GI L + HRA+ D + IL +
Sbjct: 548 IAKHLGISL-ENHHRAVDDAKATADILLK 575
>gi|387818645|ref|YP_005678992.1| DNA polymerase III subunit alpha [Clostridium botulinum H04402 065]
gi|322806689|emb|CBZ04258.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065]
Length = 1432
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 24/207 (11%)
Query: 99 KTEISKIQRIQHYDIEQ---IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLL 155
K I I I+ Y ++ I+++ D T +VFD+ETTGFS +N++IIEI +
Sbjct: 385 KGNIKVIYGIEAYLVDDGVPIVSKAGDKTIEDTFVVFDLETTGFSSKNDKIIEIGAVKIE 444
Query: 156 GGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGG 212
G+ F VNP+R +P+ + IT DMV D ++ ++P + ++ G
Sbjct: 445 KGKIVDRFSEFVNPERSIPDKITELTSITDDMV--DDKEAIDKILPRFIEFI-------G 495
Query: 213 YILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQA 272
+ VAHNA +FDV F+ E N+ MDT+TL+R L + L
Sbjct: 496 NSVVVAHNA-AFDVSFINKNCKDLKIEFKNS--VMDTVTLSRFLFPE-----LKRYKLNV 547
Query: 273 LREYYGIPLVGSAHRAMADVNCLSLIL 299
+ ++ GI L + HRA+ D + IL
Sbjct: 548 IAKHLGISL-ENHHRAVDDAKATADIL 573
>gi|334134195|ref|ZP_08507707.1| DNA polymerase III, alpha subunit, Gram-positive type
[Paenibacillus sp. HGF7]
gi|333608277|gb|EGL19579.1| DNA polymerase III, alpha subunit, Gram-positive type
[Paenibacillus sp. HGF7]
Length = 1109
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 20/181 (11%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLL-GGENSTFQTLVNPKRQVPNAHVHGIT-- 181
K T +VFDIETTG S N +IIEIA + G E + T + P ++P H+ +T
Sbjct: 91 KQATYVVFDIETTGLSVLNNKIIEIAGVKVQEGKEIDRYSTFIQPHEKIP-YHIQQLTNI 149
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
TD + K D P + D +P + ++ G + VAHNAR FD+ F+ R +
Sbjct: 150 TDEMVK-DAPELADELPKFIDFI-------GDSVLVAHNAR-FDIGFIQANLKRLGHPQM 200
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL +AR L S ++ L L + + + L + HRA+ D L +LQ
Sbjct: 201 TNAV-LDTLEMARLLFPSMKNH-----RLNTLSDKFKVSL-ENHHRAIDDTIALGHVLQH 253
Query: 302 L 302
L
Sbjct: 254 L 254
>gi|429767460|ref|ZP_19299657.1| PHP domain protein [Clostridium celatum DSM 1785]
gi|429180870|gb|EKY22071.1| PHP domain protein [Clostridium celatum DSM 1785]
Length = 693
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 21/175 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +VFDIETTGFS +N++IIEI + G F VNP+R +P + GI+ DM
Sbjct: 434 TYVVFDIETTGFSSKNDKIIEIGAVKIQNGVIVDNFSEFVNPRRPIPYNITELTGISDDM 493
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V + ++D++P L ++ G + VAHNA SFD F+ E N
Sbjct: 494 VANANA--IDDVLPRFLEFI-------GDAVVVAHNA-SFDCSFISKNCMDLGLEFNNT- 542
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
+DT+ L R L S V L + ++ G+ L S HRA+ D IL
Sbjct: 543 -IVDTVQLCRFLYPELKS-----VKLNLVAKHLGVKL-ESHHRAVDDAKATGDIL 590
>gi|354581537|ref|ZP_09000441.1| DNA polymerase III, alpha subunit [Paenibacillus lactis 154]
gi|353201865|gb|EHB67318.1| DNA polymerase III, alpha subunit [Paenibacillus lactis 154]
Length = 1438
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 101/208 (48%), Gaps = 25/208 (12%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLL-GGENSTFQTLVNPKRQVPNAHVHGITT--- 182
T +VFDIETTG S +IIE+A + G E + T VNP ++P H+ +T
Sbjct: 419 ATYVVFDIETTGLSITANKIIELAAVKMHEGKEVDRYATFVNPHERIP-YHIQQLTNIND 477
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
DMV D P +E ++ + +V G + VAHNAR FDV F+ + +
Sbjct: 478 DMV--RDAPELEPVLKEFVEFV-------GDAVLVAHNAR-FDVGFIQASLQNAGMDTLD 527
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
N ++DTL LAR L+ G N L L + Y + L S HRA+ D L+ IL L
Sbjct: 528 N-PYLDTLELAR-LLHPGMKNH----RLNTLADKYKVAL-ESHHRAIDDTVALAGILNGL 580
Query: 303 TFDL-KLSLCDLIER--GFTPSDLINPK 327
D K+ +++R + DL N +
Sbjct: 581 LADADKMKGIKMLDRLNDYVGMDLSNAR 608
>gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247]
gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM
43247]
Length = 595
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 106/215 (49%), Gaps = 26/215 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHV--HGITTDM 184
T +V D+ETTG +RI EI + GGE F TLV+P+R +P V GIT M
Sbjct: 37 TLVVVDLETTGSDPAGDRITEIGAVKIRGGEVLGEFATLVDPERSIPPQIVTLTGITHAM 96
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V PR+E+++P + + + G IL VAHNAR FD+ FL R + P
Sbjct: 97 VSA--APRIEEVLPAFIEFAR------GSIL-VAHNAR-FDMGFLRRNAQRLHLDFPFP- 145
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQ 300
L + T+T+AR ++ P+ V L AL + + + V HRA+ D V +L+
Sbjct: 146 LSLCTVTMARRILHR--EEAPT-VRLSALADLFDVS-VRPTHRALDDARATVEVFHHLLE 201
Query: 301 RLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLV 335
R+ S+ DL E + P +P+ + K L
Sbjct: 202 RVGNQGVHSIRDLTE--YLPR--TDPQLRAKRHLA 232
>gi|345303147|ref|YP_004825049.1| DNA polymerase III subunit epsilon [Rhodothermus marinus
SG0.5JP17-172]
gi|345112380|gb|AEN73212.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus
SG0.5JP17-172]
Length = 565
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 103/217 (47%), Gaps = 22/217 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTD 183
V+ +V D ETTG S ++RIIE+A + GG F TL+NP R VP + GITT
Sbjct: 6 VSFVVVDTETTG-SGPDDRIIELAAVRVQGGRLVDRFATLINPGRSVPPFITRLTGITTA 64
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ P ++++P L ++ G + VAHN +FD L E R P N
Sbjct: 65 MLV--GRPTADEVLPDFLDFL-------GDGVLVAHNL-AFDRKMLEAELRRLGLPWPGN 114
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
TL LAR L+ LP+K L L +Y IP V + HRA+ D + +L RL
Sbjct: 115 PALC-TLRLARRLL----PGLPAK-GLDGLIRFYQIP-VENRHRALGDAEATAHVLLRLL 167
Query: 304 FDLKLSL-CDLIERGFTPSDLINPKKKKKSKLVSNQE 339
+ + D +E T P+ K S LV +E
Sbjct: 168 DEARRQHGIDTLEALLTFQQQRYPQYKNASPLVRLRE 204
>gi|418635154|ref|ZP_13197539.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus lugdunensis VCU139]
gi|374842166|gb|EHS05612.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus lugdunensis VCU139]
Length = 1438
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH 178
N+DL K T +VFD+ETTG S + ++IIE+A + GE F+ NP +++ ++
Sbjct: 414 NRDL-KDATYVVFDVETTGLSNQYDQIIELAAVKVYDGEIIDKFERFSNPHQKLSETIIN 472
Query: 179 --GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC 236
IT DM+ D P +++++ +V G +FVAHNA SFD+ F+ + R
Sbjct: 473 LTHITDDMLT--DAPEIDEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERI 522
Query: 237 SYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
+ N + +DTL L+R + G K L L + YG+ L HRA+ D +
Sbjct: 523 GFGPSTNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATA 575
Query: 297 LILQRLTFDLK 307
I ++ +K
Sbjct: 576 YIFIKMLQQMK 586
>gi|299144044|ref|ZP_07037124.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518529|gb|EFI42268.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 1421
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 25/191 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDMVC 186
+VFDIETTGFS + + I EI ++ G F LVNP ++P+ V GI+ D V
Sbjct: 407 VVFDIETTGFSPQVDEITEIGAVKIVDGVIVDRFSQLVNPMIKIPDRVVELTGISNDFV- 465
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P ++ +I + K+ + VAHNA FD+ F+ + + Y + N+
Sbjct: 466 -KDEPTIDKVIVDFNDFCKNS-------VLVAHNA-GFDISFIRRDMLK--YNLSFNFTV 514
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+DTL+LAR ++K + +L AL + G+ LV +AHRA+ D + + ++ L
Sbjct: 515 LDTLSLARAIIKD-----IKRFNLTALSKKLGVSLV-NAHRAVNDAEATAEVFIKMLDIL 568
Query: 307 K----LSLCDL 313
K + CD+
Sbjct: 569 KKLGIKTFCDI 579
>gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
HKU09-01]
gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
gi|385784571|ref|YP_005760744.1| DNA polymerase III PolC-type [Staphylococcus lugdunensis N920143]
gi|418414243|ref|ZP_12987459.1| DNA polymerase III polC-type [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
HKU09-01]
gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
gi|339894827|emb|CCB54123.1| DNA polymerase III PolC-type [Staphylococcus lugdunensis N920143]
gi|410877881|gb|EKS25773.1| DNA polymerase III polC-type [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 1438
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH 178
N+DL K T +VFD+ETTG S + ++IIE+A + GE F+ NP +++ ++
Sbjct: 414 NRDL-KDATYVVFDVETTGLSNQYDQIIELAAVKVYDGEIIDKFERFSNPHQKLSETIIN 472
Query: 179 --GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC 236
IT DM+ D P +++++ +V G +FVAHNA SFD+ F+ + R
Sbjct: 473 LTHITDDMLT--DAPEIDEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERI 522
Query: 237 SYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
+ N + +DTL L+R + G K L L + YG+ L HRA+ D +
Sbjct: 523 GFGPSTNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATA 575
Query: 297 LILQRLTFDLK 307
I ++ +K
Sbjct: 576 YIFIKMLQQMK 586
>gi|319892281|ref|YP_004149156.1| DNA polymerase III subunit alpha [Staphylococcus pseudintermedius
HKU10-03]
gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
HKU10-03]
Length = 1435
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 20/184 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT D
Sbjct: 418 ATYVVFDVETTGLSNQYDKIIELAAVKVKNGEIIDKFERFSNPHEKLTETIKNLTHITDD 477
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ D P +E+++ +V G +FVAHNA SFD+ F+ + R + P+
Sbjct: 478 ML--KDAPEIEEVLTEFKAWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFG-PST 526
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+DTL L+R + S G K L L + YG+ L HRA+ D + I ++
Sbjct: 527 NAVIDTLELSRTINTSYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFVKML 580
Query: 304 FDLK 307
LK
Sbjct: 581 AQLK 584
>gi|153814386|ref|ZP_01967054.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
gi|145848782|gb|EDK25700.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
torques ATCC 27756]
Length = 1459
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 94/183 (51%), Gaps = 21/183 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T IVFDIETTGFS + IIEI + G+ F T VNPKR +P ++ IT +M
Sbjct: 421 TYIVFDIETTGFSSIKDAIIEIGAVKVTDGKITDRFSTFVNPKRPIPFEITNLTSITDEM 480
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P ++ ++P L + G + VAHNA FDV F+ E + S + + +
Sbjct: 481 VM--DSPTIDVVLPQFLEF-------AGDGVLVAHNA-GFDVGFI--EQNCRSLGLSDEF 528
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+++DT+ LAR L+ + SK L + + I L + HRA+ D + I + T
Sbjct: 529 VYLDTVALARVLLPT-----LSKYKLNIVAKALNISL-ENHHRAVDDAEATAEIFVKFTE 582
Query: 305 DLK 307
LK
Sbjct: 583 MLK 585
>gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
16795]
gi|164602936|gb|EDQ96401.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
bartlettii DSM 16795]
Length = 1432
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 27/190 (14%)
Query: 118 AENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN-- 174
A +KDL++ T +VFD+ETTGFS +N++I EI + E F L+NP++ +
Sbjct: 409 ANDKDLSQ--TFVVFDLETTGFSNKNDKITEIGAVKVKNFEIVDRFNELINPEKDISYKV 466
Query: 175 AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFS 234
+ GIT D++ D P +E+++P + +V G + VAHNA FD+ F+ +
Sbjct: 467 QELTGITNDLI--KDKPTIEEILPKFMEFV-------GDSVLVAHNAE-FDIGFINQKCK 516
Query: 235 RCSYEVPNNWLFMDTLTLARELMKSGGSNLP--SKVSLQALREYYGIPLVGSAHRAMADV 292
+ E N + DTL LAR L LP + L L + G+PL + HRA+ D
Sbjct: 517 EMNIEFKNKSV--DTLMLARIL-------LPHLKRFKLNNLTKELGVPL-HNHHRAVDDA 566
Query: 293 NCLSLILQRL 302
+ I +
Sbjct: 567 AATAQIFIKF 576
>gi|404379238|ref|ZP_10984303.1| exonuclease, DNA polymerase III, epsilon subunit [Simonsiella
muelleri ATCC 29453]
gi|294482690|gb|EFG30379.1| exonuclease, DNA polymerase III, epsilon subunit [Simonsiella
muelleri ATCC 29453]
Length = 450
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 19/178 (10%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
++ D+E TG ++RI EIAF G F LVNP++++ + GI+ +MV
Sbjct: 20 VILDLEATGGHFMHDRITEIAFLRFDGQNVERFTQLVNPQKEISEFVTQLTGISNEMVA- 78
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
+ P D+IP +L ++ L VAHN+R FD L NEF R VP +
Sbjct: 79 -NAPTFADVIPHILPMLRGS-------LLVAHNSR-FDYTLLRNEFRRAG--VPFATPTL 127
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
T+ L+R L + K +L A+ +G+ G HRA ADV L+ LQ D
Sbjct: 128 CTVKLSRTLYPN-----EHKHNLDAVANRFGLTSDGKRHRAWADVAILADFLQAALLD 180
>gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus harei ACS-146-V-Sch2b]
Length = 1012
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 29/185 (15%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDMVC 186
+VFDIETTG S N++I EI + G F L+NP++++P V GI+ MV
Sbjct: 1 MVFDIETTGLSSRNDKITEIGAVKIKNGMIVDRFSQLINPEKEIPQVVVDLTGISNAMV- 59
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ P +E++I + K + VAHNA+ FD+ F+ E++ NN +F
Sbjct: 60 -ENEPTIEEVILKFYDFAKDA-------VLVAHNAK-FDISFIRREYAN------NNLVF 104
Query: 247 ----MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL LAR M S++ + +L L + G+ LVG AHRA+ D + + +L
Sbjct: 105 NHPILDTLVLARATM----SDM-KRFNLGTLCKNLGVSLVG-AHRAVNDAEATAEVFIKL 158
Query: 303 TFDLK 307
+K
Sbjct: 159 IEKIK 163
>gi|331087674|ref|ZP_08336601.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
gi|330410366|gb|EGG89799.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
Length = 1520
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 21/183 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T IVFDIETTGFS + IIE+ + G+ F T VNPKR +P ++ IT +M
Sbjct: 482 TYIVFDIETTGFSSIKDAIIEVGAVKVTDGKITDRFSTFVNPKRPIPFEITNLTSITDEM 541
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P ++ ++P L + G + VAHNA FDV F+ E + S + + +
Sbjct: 542 VM--DSPTIDVVLPQFLEF-------AGDGVLVAHNA-GFDVGFI--EQNCRSLGLSDEF 589
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+++DT+ LAR L+ + SK L + + I L + HRA+ D + I + T
Sbjct: 590 VYLDTVALARVLLPT-----LSKYKLNIVAKALNISL-ENHHRAVDDAEATAEIFVKFTE 643
Query: 305 DLK 307
LK
Sbjct: 644 MLK 646
>gi|317500099|ref|ZP_07958334.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
gi|316898584|gb|EFV20620.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
Length = 1520
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 21/183 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T IVFDIETTGFS + IIE+ + G+ F T VNPKR +P ++ IT +M
Sbjct: 482 TYIVFDIETTGFSSIKDAIIEVGAVKVTDGKITDRFSTFVNPKRPIPFEITNLTSITDEM 541
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P ++ ++P L + G + VAHNA FDV F+ E + S + + +
Sbjct: 542 VM--DSPTIDVVLPQFLEF-------AGDGVLVAHNA-GFDVGFI--EQNCRSLGLSDEF 589
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+++DT+ LAR L+ + SK L + + I L + HRA+ D + I + T
Sbjct: 590 VYLDTVALARVLLPT-----LSKYKLNIVAKALNISL-ENHHRAVDDAEATAEIFVKFTE 643
Query: 305 DLK 307
LK
Sbjct: 644 MLK 646
>gi|421837322|ref|ZP_16271538.1| DNA polymerase III PolC, partial [Clostridium botulinum
CFSAN001627]
gi|409740565|gb|EKN40774.1| DNA polymerase III PolC, partial [Clostridium botulinum
CFSAN001627]
Length = 250
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 24/209 (11%)
Query: 99 KTEISKIQRIQHYDIEQ---IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLL 155
K I I I+ Y ++ I+++ D T +VFD+ETTGFS +N++IIEI +
Sbjct: 48 KGNIKVIYGIEAYLVDDGVPIVSKAGDKTIEDTFVVFDLETTGFSSKNDKIIEIGAVKIE 107
Query: 156 GGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGG 212
G+ F VNP+R +P+ + IT DMV D ++ ++P + ++ G
Sbjct: 108 KGKIVDRFSEFVNPERSIPDKITELTSITDDMV--DDKEAIDKILPRFIEFI-------G 158
Query: 213 YILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQA 272
+ VAHNA +FDV F+ E N+ MDT+TL+R L + L
Sbjct: 159 NSVVVAHNA-AFDVSFINKNCKDLKIEFKNS--VMDTVTLSRFLFPE-----LKRYKLNV 210
Query: 273 LREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ ++ GI L + HRA+ D + IL +
Sbjct: 211 IAKHLGISL-ENHHRAVDDAKATADILLK 238
>gi|386319451|ref|YP_006015614.1| DNA polymerase III subunit alpha [Staphylococcus pseudintermedius
ED99]
gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus pseudintermedius ED99]
Length = 1435
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 20/184 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT D
Sbjct: 418 ATYVVFDVETTGLSNQYDKIIELAAVKVKNGEIIDKFERFSNPHEKLTETIKNLTHITDD 477
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ D P +E+++ +V G +FVAHNA SFD+ F+ + R + P+
Sbjct: 478 ML--KDAPEIEEVLTEFKAWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFG-PSA 526
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+DTL L+R + S G K L L + YG+ L HRA+ D + I ++
Sbjct: 527 NAVIDTLELSRTINTSYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFVKML 580
Query: 304 FDLK 307
LK
Sbjct: 581 AQLK 584
>gi|440782598|ref|ZP_20960615.1| DNA polymerase III subunit alpha [Clostridium pasteurianum DSM 525]
gi|440220122|gb|ELP59331.1| DNA polymerase III subunit alpha [Clostridium pasteurianum DSM 525]
Length = 1449
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 21/191 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T V D+ETTGFS E+I EI G+ F VNP++ +P V IT DM
Sbjct: 424 TYCVLDLETTGFSPVTEKITEIGIMKYKEGKVIDQFSCFVNPEKPIPARVVEVTNITDDM 483
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V + +E + P +L ++K + VAHNA FDV FL + Y+ ++
Sbjct: 484 VRNAET--IEQVFPKMLEFIKGS-------VLVAHNA-GFDVGFLKHNARVLGYDF--DF 531
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
++DTL+LA+E+ + L + ++ GI V AHRA+ DV+ + + +
Sbjct: 532 TYLDTLSLAQEVFPDFKT-----YKLGRIAKHLGIK-VEVAHRALDDVDTTVKVFEVMLG 585
Query: 305 DLKLSLCDLIE 315
L+ C IE
Sbjct: 586 KLRERGCQTIE 596
>gi|86741790|ref|YP_482190.1| hypothetical protein Francci3_3104 [Frankia sp. CcI3]
gi|86568652|gb|ABD12461.1| DNA polymerase III, epsilon subunit [Frankia sp. CcI3]
Length = 584
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 103/218 (47%), Gaps = 26/218 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +VFD+ETTG S + I EI + GG + TLV P +P + + GIT
Sbjct: 28 VTFVVFDLETTGTSPGRDEITEIGAVRVRGGRILAEMATLVRPGVGIPPMVSVLTGITDV 87
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + + G +L VAHNA FD+ FL C Y VP
Sbjct: 88 MVAT--APPVTQVLPTFLEFAR------GAVL-VAHNA-PFDLGFLRAAVELCGYPVP-V 136
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
W ++DTL +AR ++ S L +L + P V HRA+AD V+ L +
Sbjct: 137 WEYLDTLRIARRVVTRDES---PDCRLTSLASLFRSP-VEPRHRALADARATVDVLHGLF 192
Query: 300 QRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
+RL +L DL + S ++P +++K L
Sbjct: 193 ERLGNAGVTTLEDLHDY----SSRVSPAQRRKRHLADG 226
>gi|336438098|ref|ZP_08617739.1| hypothetical protein HMPREF0990_00133 [Lachnospiraceae bacterium
1_1_57FAA]
gi|336015142|gb|EGN44966.1| hypothetical protein HMPREF0990_00133 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 1353
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 21/183 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T IVFDIETTGFS + IIE+ + G+ F T VNPKR +P ++ IT +M
Sbjct: 482 TYIVFDIETTGFSSIKDAIIEVGAVKVTDGKITDRFSTFVNPKRPIPFEITNLTSITDEM 541
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P ++ ++P L + G + VAHNA FDV F+ E + S + + +
Sbjct: 542 VM--DSPTIDVVLPQFLEF-------AGDGVLVAHNA-GFDVGFI--EQNCRSLGLSDEF 589
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+++DT+ LAR L+ + SK L + + I L + HRA+ D + I + T
Sbjct: 590 VYLDTVALARVLLPT-----LSKYKLNIVAKALNISL-ENHHRAVDDAEATAEIFVKFTE 643
Query: 305 DLK 307
LK
Sbjct: 644 MLK 646
>gi|420915940|ref|ZP_15379245.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0125-S]
gi|421033871|ref|ZP_15496893.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0930-S]
gi|392123624|gb|EIU49386.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0125-S]
gi|392230412|gb|EIV55922.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0930-S]
Length = 610
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG S EN+ I EI + GGE TLV+P+R +P V GIT+ M
Sbjct: 37 TFVVVDLETTGGSAENDAITEIGAVKVRGGEVLGELATLVDPQRSLPPQIVRLTGITSAM 96
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + ++P L + + + VAHNA FD+ FL +C + P
Sbjct: 97 LV--DAPPIAQVLPAFLEFARG-------AVLVAHNA-GFDIGFLKAAARQCGIDWPQPA 146
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ LAR ++ + +VSL AL + G + HRA+ D +L L
Sbjct: 147 VLC-TVRLARRVLS---RDEAPRVSLGALAQLLGASTTPN-HRALDDARATVDVLHAL 199
>gi|453365745|dbj|GAC78665.1| DNA polymerase III epsilon subunit [Gordonia malaquae NBRC 108250]
Length = 604
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG S + + I EI + GGE F TLV+P R++P V GITT M
Sbjct: 32 TLVVVDLETTGGSSDTDAITEIGAVKIRGGEVLGEFATLVDPGREIPPQIVALTGITTAM 91
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
D P +E+++P + + G IL VAHNAR FD FL +R + W
Sbjct: 92 TY--DAPPIEEVLPAFAEFAR------GSIL-VAHNAR-FDTAFLRKAAARMNLP----W 137
Query: 245 LF---MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
F + T+ +AR ++ PS V L AL + + + V HRA+ D + R
Sbjct: 138 PFTTSLCTVAMARRILTR--DEAPS-VKLSALADLFNVS-VRPTHRALDDARATVDVFHR 193
Query: 302 L 302
L
Sbjct: 194 L 194
>gi|333897122|ref|YP_004470996.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112387|gb|AEF17324.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 1410
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 38/210 (18%)
Query: 130 IVFDIETTGFSRENERIIEIA------FQDLLGGENSTFQTLVNPKRQVPN--AHVHGIT 181
+VFDIETTG S N+ IIEI FQ + TF+T VNP+ + + GIT
Sbjct: 400 VVFDIETTGLSSINDNIIEIGAVKIKNFQIV-----DTFETFVNPQVHISKFITKLTGIT 454
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DMV + P +E+++P L ++K + VAHNA +FDV F+ + EV
Sbjct: 455 DDMV--KEYPSIEEILPKFLDFIKDS-------ILVAHNA-NFDVTFIKTKARNLGMEVD 504
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N L DTL L+R + + NL + L + ++ G+ L + HRA+ D + I +
Sbjct: 505 NPVL--DTLELSRHMYE----NLKN-YKLDTVAQHLGVSL-ENHHRAVDDAKATAEIFIK 556
Query: 302 LTFDLKLSLCDLIERGFTPSDLINPKKKKK 331
S+ L E G + IN K K
Sbjct: 557 -------SINKLKENGIEKVNEINDYLKNK 579
>gi|419713417|ref|ZP_14240844.1| hypothetical protein S7W_03065 [Mycobacterium abscessus M94]
gi|420863867|ref|ZP_15327258.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0303]
gi|420868235|ref|ZP_15331618.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0726-RA]
gi|420872667|ref|ZP_15336046.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0726-RB]
gi|420986860|ref|ZP_15450019.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0206]
gi|421039390|ref|ZP_15502400.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0116-R]
gi|421043025|ref|ZP_15506027.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0116-S]
gi|382946827|gb|EIC71110.1| hypothetical protein S7W_03065 [Mycobacterium abscessus M94]
gi|392071534|gb|EIT97379.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0726-RA]
gi|392071544|gb|EIT97388.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0303]
gi|392074355|gb|EIU00193.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0726-RB]
gi|392186967|gb|EIV12611.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0206]
gi|392225499|gb|EIV51016.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0116-R]
gi|392240858|gb|EIV66350.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0116-S]
Length = 600
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG S EN+ I EI + GGE TLV+P+R +P V GIT+ M
Sbjct: 27 TFVVVDLETTGGSAENDAITEIGAVKVRGGEVLGELATLVDPQRSLPPQIVRLTGITSAM 86
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + ++P L + + + VAHNA FD+ FL +C + P
Sbjct: 87 LV--DAPPIAQVLPAFLEFARG-------AVLVAHNA-GFDIGFLKAAARQCGIDWPQPA 136
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ LAR ++ + +VSL AL + G + HRA+ D +L L
Sbjct: 137 VLC-TVRLARRVLS---RDEAPRVSLGALAQLLGASTTPN-HRALDDARATVDVLHAL 189
>gi|365869921|ref|ZP_09409466.1| hypothetical protein MMAS_18680 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|421048816|ref|ZP_15511812.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|421052222|ref|ZP_15515216.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363997729|gb|EHM18939.1| hypothetical protein MMAS_18680 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|392240825|gb|EIV66318.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense CCUG
48898]
gi|392242981|gb|EIV68468.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense CCUG
48898]
Length = 600
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG S EN+ I EI + GGE TLV+P+R +P V GIT+ M
Sbjct: 27 TFVVVDLETTGGSAENDAITEIGAVKVRGGEVLGELATLVDPQRSLPPQIVRLTGITSAM 86
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + ++P L + + + VAHNA FD+ FL +C + P
Sbjct: 87 LV--DAPPIAQVLPAFLEFARG-------AVLVAHNA-GFDIGFLKAAARQCGIDWPQPA 136
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ LAR ++ + +VSL AL + G + HRA+ D +L L
Sbjct: 137 VLC-TVRLARRVLS---RDEAPRVSLGALAQLLGASTTPN-HRALDDARATVDVLHAL 189
>gi|169629058|ref|YP_001702707.1| hypothetical protein MAB_1971c [Mycobacterium abscessus ATCC 19977]
gi|420909554|ref|ZP_15372867.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0125-R]
gi|420920323|ref|ZP_15383621.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0728-S]
gi|420926828|ref|ZP_15390112.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-1108]
gi|420931021|ref|ZP_15394297.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
1S-151-0930]
gi|420938071|ref|ZP_15401340.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
1S-152-0914]
gi|420941281|ref|ZP_15404540.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
1S-153-0915]
gi|420946104|ref|ZP_15409357.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
1S-154-0310]
gi|420966337|ref|ZP_15429544.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0810-R]
gi|420977172|ref|ZP_15440353.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0212]
gi|420982548|ref|ZP_15445718.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0728-R]
gi|421006998|ref|ZP_15470111.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0119-R]
gi|421012476|ref|ZP_15475564.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0122-R]
gi|421017385|ref|ZP_15480447.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0122-S]
gi|421022889|ref|ZP_15485937.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0731]
gi|421028529|ref|ZP_15491564.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0930-R]
gi|169241025|emb|CAM62053.1| Probable DNA polymerase III epsilon subunit [Mycobacterium
abscessus]
gi|392121928|gb|EIU47693.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0125-R]
gi|392134328|gb|EIU60070.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0728-S]
gi|392138635|gb|EIU64370.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-1108]
gi|392140039|gb|EIU65771.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
1S-151-0930]
gi|392143586|gb|EIU69311.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
1S-152-0914]
gi|392151249|gb|EIU76960.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
1S-153-0915]
gi|392159312|gb|EIU85008.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
1S-154-0310]
gi|392168050|gb|EIU93730.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0212]
gi|392174566|gb|EIV00233.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0728-R]
gi|392200943|gb|EIV26547.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0119-R]
gi|392206847|gb|EIV32429.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0122-R]
gi|392212609|gb|EIV38170.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0122-S]
gi|392215586|gb|EIV41134.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0731]
gi|392231094|gb|EIV56603.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0930-R]
gi|392254705|gb|EIV80169.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0810-R]
Length = 600
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG S EN+ I EI + GGE TLV+P+R +P V GIT+ M
Sbjct: 27 TFVVVDLETTGGSAENDAITEIGAVKVRGGEVLGELATLVDPQRSLPPQIVRLTGITSAM 86
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + ++P L + + + VAHNA FD+ FL +C + P
Sbjct: 87 LV--DAPPIAQVLPAFLEFARG-------AVLVAHNA-GFDIGFLKAAARQCGIDWPQPA 136
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ LAR ++ + +VSL AL + G + HRA+ D +L L
Sbjct: 137 VLC-TVRLARRVLS---RDEAPRVSLGALAQLLGASTTPN-HRALDDARATVDVLHAL 189
>gi|170761721|ref|YP_001787734.1| DNA polymerase III PolC [Clostridium botulinum A3 str. Loch Maree]
gi|169408710|gb|ACA57121.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum A3 str. Loch Maree]
Length = 1432
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 24/209 (11%)
Query: 99 KTEISKIQRIQHYDIEQ---IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLL 155
K I I I+ Y ++ I+++ D T +VFD+ETTGFS +N++IIEI +
Sbjct: 385 KGNIKVIYGIEAYLVDDGVPIVSKAGDKTIEDTFVVFDLETTGFSNKNDKIIEIGAVKIE 444
Query: 156 GGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGG 212
G+ F VNP R +P+ + IT DMV D ++ ++P + ++ G
Sbjct: 445 KGKIVDRFSEFVNPGRSIPDKITELTSITDDMV--QDKETIDKILPRFIDFI-------G 495
Query: 213 YILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQA 272
+ VAHNA +FDV F+ E N+ MDT+TL+R L + L
Sbjct: 496 DSVVVAHNA-AFDVSFINKNCKDLKIEFENS--VMDTVTLSRFLFPE-----LKRYKLNV 547
Query: 273 LREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ ++ GI L + HRA+ D + IL +
Sbjct: 548 IAKHLGISL-ENHHRAVDDAKATADILLK 575
>gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435]
gi|123660050|sp|Q4L5W6.1|DPO3_STAHJ RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
haemolyticus JCSC1435]
Length = 1438
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 28/211 (13%)
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH 178
++DL K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++
Sbjct: 414 DRDL-KEATYVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDKFERFSNPHEKLSETIIN 472
Query: 179 --GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC 236
IT DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R
Sbjct: 473 LTHITDDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERL 522
Query: 237 SYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
+ N + +DTL L+R + G K L L + YG+ L HRA+ D +
Sbjct: 523 GFGPSTNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTESTA 575
Query: 297 LILQRLTFDLKLSLCDLIERGFTPSDLINPK 327
I ++ +K E G T IN K
Sbjct: 576 YIFIKMVQQMK-------ELGVTNHKDINQK 599
>gi|414582728|ref|ZP_11439868.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-1215]
gi|420877806|ref|ZP_15341174.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0304]
gi|420881708|ref|ZP_15345072.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0421]
gi|420888624|ref|ZP_15351977.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0422]
gi|420893261|ref|ZP_15356603.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0708]
gi|420898681|ref|ZP_15362017.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0817]
gi|420904140|ref|ZP_15367460.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-1212]
gi|420971066|ref|ZP_15434262.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0921]
gi|392086754|gb|EIU12578.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0304]
gi|392090763|gb|EIU16574.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0421]
gi|392092238|gb|EIU18047.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0422]
gi|392101851|gb|EIU27638.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0708]
gi|392107922|gb|EIU33704.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0817]
gi|392107964|gb|EIU33745.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-1212]
gi|392117880|gb|EIU43648.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-1215]
gi|392171473|gb|EIU97149.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0921]
Length = 600
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG S EN+ I EI + GGE TLV+P+R +P V GIT+ M
Sbjct: 27 TFVVVDLETTGGSAENDAITEIGAVKVRGGEVLGELATLVDPQRSLPPQIVRLTGITSAM 86
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + ++P L + + + VAHNA FD+ FL +C + P
Sbjct: 87 LV--DAPPIAQVLPAFLEFARG-------AVLVAHNA-GFDIGFLKAAARQCGIDWPQPA 136
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ LAR ++ + +VSL AL + G + HRA+ D +L L
Sbjct: 137 VLC-TVRLARRVLS---RDEAPRVSLGALAQLLGASTTPN-HRALDDARATVDVLHAL 189
>gi|419774365|ref|ZP_14300335.1| putative DNA polymerase III PolC [Staphylococcus aureus subsp.
aureus CO-23]
gi|383971891|gb|EID87953.1| putative DNA polymerase III PolC [Staphylococcus aureus subsp.
aureus CO-23]
Length = 852
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|419708668|ref|ZP_14236137.1| hypothetical protein OUW_04006 [Mycobacterium abscessus M93]
gi|382943943|gb|EIC68254.1| hypothetical protein OUW_04006 [Mycobacterium abscessus M93]
Length = 600
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG S EN+ I EI + GGE TLV+P+R +P V GIT+ M
Sbjct: 27 TFVVVDLETTGGSAENDAITEIGAVKVRGGEVLGELATLVDPQRSLPPQIVRLTGITSAM 86
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + ++P L + + + VAHNA FD+ FL +C + P
Sbjct: 87 LV--DAPPIAQVLPAFLEFARG-------AVLVAHNA-GFDIGFLKAAARQCGIDWPQPA 136
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ LAR ++ + +VSL AL + G + HRA+ D +L L
Sbjct: 137 VLC-TVRLARRVLS---RDEAPRVSLGALAQLLGASTTPN-HRALDDARATVDVLHAL 189
>gi|392392558|ref|YP_006429160.1| DNA polymerase III subunit alpha [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390523636|gb|AFL99366.1| DNA polymerase III, alpha chain [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 1446
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 83/169 (49%), Gaps = 21/169 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T V D+ETTGFS E+I EI + GG+ F VNP++ +P V IT DM
Sbjct: 422 TYCVLDLETTGFSAVTEKITEIGIMKIQGGKIIDQFGCFVNPEKPIPARVVEVTNITDDM 481
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D ++ + P LL +++ + VAHNA FD+ FL + Y ++
Sbjct: 482 V--KDAETIDQVFPKLLQFIEGS-------VLVAHNA-DFDMGFLKHTAKVLGYNF--DY 529
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN 293
++DTL+LAREL + L + + GI V AHRA+ DV
Sbjct: 530 TYLDTLSLARELFPDYKT-----YKLGRIAKNLGIK-VEVAHRALDDVG 572
>gi|255523926|ref|ZP_05390889.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
gi|296185167|ref|ZP_06853577.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
carboxidivorans P7]
gi|255512357|gb|EET88634.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
gi|296050001|gb|EFG89425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
carboxidivorans P7]
Length = 1449
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 88/183 (48%), Gaps = 21/183 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T V D+ETTGFS E+I EI + G+ F VNPK+ +P V IT DM
Sbjct: 425 TYCVLDLETTGFSPVIEKITEIGIMKIKDGKVIDKFSCFVNPKKPIPPRVVEVTNITDDM 484
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D +E + P +L ++K + VAHNA FD+ FL + Y+ ++
Sbjct: 485 V--RDAETIEQVFPKMLDFIKDS-------VLVAHNAE-FDIGFLKHNARVLGYDF--DF 532
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
++DTLTLA+EL + L + + GI V AHRA+ DV+ I +
Sbjct: 533 TYLDTLTLAQELFPDFKT-----YKLGRIAKNLGIK-VEVAHRALDDVDTTVKIFNVMLE 586
Query: 305 DLK 307
LK
Sbjct: 587 KLK 589
>gi|383828415|ref|ZP_09983504.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora xinjiangensis XJ-54]
gi|383461068|gb|EID53158.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora xinjiangensis XJ-54]
Length = 569
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 104/219 (47%), Gaps = 26/219 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTD 183
VT +V D+ETTG + + I EI + GG F TL+NP +P V GITT
Sbjct: 15 VTFVVVDLETTGGAPDGGNITEIGAVKVRGGRVLGEFATLINPGTSIPPQIVALTGITTA 74
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV PR+E+++P L + + VAHNA FD FL R Y PN
Sbjct: 75 MVHH--APRIEEVLPSFLEFADG-------AVLVAHNA-GFDTSFLKAACGRHGYAWPNP 124
Query: 244 WLFMDTLTLARELMKSGGSNLPSKV-SLQALREYYGIPLVGSAHRAMAD----VNCLSLI 298
+ TL LAR +++ + P + L AL +G + HRA+ D V+ L +
Sbjct: 125 -TVLCTLKLARRVLRR--EHTPRRSHRLSALAALFGSATTPN-HRALDDARACVDVLHGL 180
Query: 299 LQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L+R+ SL +L++ + P I P +++K L +
Sbjct: 181 LERVGSLGVQSLEELLD--YLPD--ITPAQRRKRDLAAG 215
>gi|406983492|gb|EKE04677.1| DNA polymerase III PolC [uncultured bacterium]
Length = 315
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 20/171 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTDMVC 186
IV DIETTG E+IIE A L+ + ++TL+NPK+++ ++ +HGIT +MV
Sbjct: 8 IVLDIETTGLDYRREKIIEFAGVKLVNNQIVEEYETLINPKQEIRHSSIKIHGITEEMVA 67
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P +L ++K + HN FD FL N+ SR Y+
Sbjct: 68 --DAPTIEEVMPKILDFIKDYP-------IIGHNV-IFDYSFL-NQASRDLYDQKLGNHR 116
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSL 297
+DT + RE+ S+ L AL + + HRAMAD L+L
Sbjct: 117 IDTQHMFREVFPEEFSH-----GLDALMNRFKVQF-DVRHRAMADAKGLAL 161
>gi|187778984|ref|ZP_02995457.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC
15579]
gi|187772609|gb|EDU36411.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sporogenes ATCC 15579]
Length = 1442
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 24/209 (11%)
Query: 99 KTEISKIQRIQHYDIEQ---IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLL 155
K I I I+ Y ++ I+++ D T +VFD+ETTGFS +N++IIEI +
Sbjct: 395 KGNIKVIYGIEAYLVDDGVPIVSKAGDKTIEDTFVVFDLETTGFSSKNDKIIEIGAVKIE 454
Query: 156 GGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGG 212
G+ F VNP+R +P + IT DMV D ++ ++P + ++ G
Sbjct: 455 KGKIVDRFSEFVNPERSIPEKITELTSITDDMV--DDKEAIDKILPRFIEFI-------G 505
Query: 213 YILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQA 272
+ VAHNA +FDV F+ E N+ MDT+TL+R L + L
Sbjct: 506 DSVVVAHNA-AFDVSFINKNCKDLKIEFKNS--VMDTVTLSRFLFPE-----LKRYKLNV 557
Query: 273 LREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ ++ GI L + HRA+ D + IL +
Sbjct: 558 IAKHLGISL-ENHHRAVDDAKATADILLK 585
>gi|168180697|ref|ZP_02615361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum NCTC 2916]
gi|182668382|gb|EDT80361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum NCTC 2916]
Length = 1432
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 24/209 (11%)
Query: 99 KTEISKIQRIQHYDIEQ---IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLL 155
K I I I+ Y ++ I+++ D T +VFD+ETTGFS +N++IIEI +
Sbjct: 385 KGNIKVIYGIEAYLVDDGVPIVSKAGDKTIEDTFVVFDLETTGFSSKNDKIIEIGAVKIE 444
Query: 156 GGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGG 212
G+ F VNPKR +P+ + IT +MV D ++ ++P + ++ G
Sbjct: 445 KGKIVDRFSEFVNPKRTIPDKITELTSITDNMV--DDKETIDKILPRFIDFI-------G 495
Query: 213 YILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQA 272
+ VAHNA SFDV F+ E N+ MDT+TL+R L + L
Sbjct: 496 DSVVVAHNA-SFDVSFINKNCKDLKIEFENS--VMDTVTLSRFLFPE-----LKRHKLNV 547
Query: 273 LREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ ++ GI L + HRA+ D + IL +
Sbjct: 548 IAKHLGISL-ENHHRAVDDAKATADILLK 575
>gi|390934922|ref|YP_006392427.1| DNA polymerase III polC-type [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570423|gb|AFK86828.1| DNA polymerase III polC-type [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 1410
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 100/205 (48%), Gaps = 28/205 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTG S N+ IIEI + + TF+T VNP+ + + GIT DMV
Sbjct: 400 VVFDIETTGLSSINDNIIEIGAVKIKNCQIVDTFETFVNPQVHISKFITKLTGITDDMV- 458
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ P +E+++P L ++K + VAHNA +FDV F+ + EV N L
Sbjct: 459 -KEYPSIEEILPKFLDFIKDS-------ILVAHNA-NFDVTFIKTKARNLGMEVDNPVL- 508
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
DTL L+R + + NL + L + ++ G+ L + HRA+ D + I +
Sbjct: 509 -DTLELSRHMYE----NLKN-YKLDTVAQHLGVSL-ENHHRAVDDAKATAEIFIK----- 556
Query: 307 KLSLCDLIERGFTPSDLINPKKKKK 331
S+ L E G + IN K K
Sbjct: 557 --SINKLKENGIEKVNEINDYLKNK 579
>gi|418420113|ref|ZP_12993294.1| hypothetical protein MBOL_18400 [Mycobacterium abscessus subsp.
bolletii BD]
gi|363999950|gb|EHM21151.1| hypothetical protein MBOL_18400 [Mycobacterium abscessus subsp.
bolletii BD]
Length = 600
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG S EN+ I EI + GGE TLV+P+R +P V GIT+ M
Sbjct: 27 TFVVVDLETTGGSAENDAITEIGAVKVRGGEVLGELATLVDPQRSLPPQIVRLTGITSAM 86
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + ++P L + + + VAHNA FD+ FL +C + P
Sbjct: 87 LV--DAPPIAQVLPAFLEFARG-------AVLVAHNA-GFDIGFLKAAARQCGIDWPQPA 136
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ LAR ++ + +VSL AL + G + HRA+ D +L L
Sbjct: 137 VLC-TVRLARRVLS---RDEAPRVSLGALAQLLGASTTPN-HRALDDARATVDVLHAL 189
>gi|358053050|ref|ZP_09146843.1| DNA polymerase III PolC [Staphylococcus simiae CCM 7213]
gi|357257480|gb|EHJ07744.1| DNA polymerase III PolC [Staphylococcus simiae CCM 7213]
Length = 1438
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKDWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGTS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC [Macrococcus caseolyticus JCSC5402]
gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
Length = 1434
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 98/209 (46%), Gaps = 33/209 (15%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ GIT
Sbjct: 414 KDATYVVFDVETTGLSSQYDKIIELAAVKVKDGEIIDKFERFSNPGERLNETIKNLTGIT 473
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E ++ +V G ++VAHNA SFD+ F+ F R Y
Sbjct: 474 DDMLI--DAPPIESVLNDFKDFV-------GDAIYVAHNA-SFDMGFIDTGFDRLGYGPT 523
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 524 ENGV-IDTLELSRTINTEMG-----KHGLNFLAKKYGVELT-QHHRAIYDAETTAHIFVK 576
Query: 302 L-------------TFDLKLSLCDLIERG 317
+ DLKLS D +R
Sbjct: 577 MLKQMETLGVTNHKEIDLKLSNKDAYKRA 605
>gi|385799864|ref|YP_005836268.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium
praevalens DSM 2228]
gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium
praevalens DSM 2228]
Length = 1404
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVFD+ETTG + IIEI GG+ + F++ +NP ++P + GI MV
Sbjct: 393 IVFDLETTGLNPSQHEIIEIGAVKYQGGKKIAEFESFINPGVRIPAKITEITGINDRMV- 451
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ P +E +I + + G + VAHNA FD F+ + E +++
Sbjct: 452 -KNAPGLEKVINDFIEF-------AGTGVLVAHNA-DFDYGFIRTALEKLEIE-KDDYTV 501
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+DTL L+R ++K ++ L L +Y+G+ L + HRA+ D N + +L +L +
Sbjct: 502 LDTLGLSRAVVKDSKNH-----KLNTLAKYFGVDL-ENHHRALDDANATAEVLAKLLELI 555
Query: 307 KLSLC 311
K C
Sbjct: 556 KDDGC 560
>gi|108800255|ref|YP_640452.1| hypothetical protein Mmcs_3289 [Mycobacterium sp. MCS]
gi|119869383|ref|YP_939335.1| hypothetical protein Mkms_3351 [Mycobacterium sp. KMS]
gi|108770674|gb|ABG09396.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
gi|119695472|gb|ABL92545.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
Length = 630
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 104/220 (47%), Gaps = 29/220 (13%)
Query: 128 TAIVFDIETTGFSRENER---IIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GIT 181
T +V D+ETTG ER I EI + GGE TLV+P R +P V GIT
Sbjct: 29 TFVVVDLETTGGRATGERPDAITEIGAVKVRGGEVLGELATLVDPGRAIPPQIVSLTGIT 88
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
T MVC PR+E ++P L + + G +L VAHNA FD+ FL +C+ P
Sbjct: 89 TAMVCA--APRIESVLPAFLEFAR------GSVL-VAHNA-GFDIGFLRAAAEQCALTWP 138
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSL 297
+ T+ LAR ++ PS V L AL + + + HRA+ D V+ L
Sbjct: 139 RPPVLC-TVKLARRVLTR--DEAPS-VRLSALAQLFRAKTTPT-HRALDDARATVDVLHG 193
Query: 298 ILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
+++R+ + DL R + P + P +++ +L
Sbjct: 194 LIERIGNQGVHTYTDL--RAYLPD--VTPAQRRNRRLADG 229
>gi|29840147|ref|NP_829253.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC]
gi|29834495|gb|AAP05131.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC]
Length = 228
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 21/211 (9%)
Query: 127 VTAIVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTD 183
+TA++F D ETTG + +RIIEIA + + + +F T VNP+ +P + +HGITT
Sbjct: 1 MTALIFYDTETTGTQIDKDRIIEIAAYNNVTKQ--SFVTYVNPEIPIPEEASKIHGITTS 58
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
V P+ + + G + VAHN SFD P L E R S E P +
Sbjct: 59 TVSS--APKFPEAYKQFCDFC------GNEAILVAHNNDSFDFPLLEKECRRHSLE-PLS 109
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+D+L A++ +LP K +LQ LR+ YG AHRA+ DV L + L
Sbjct: 110 LRTIDSLKWAQKYR----PDLP-KHNLQYLRQVYGF-AENQAHRALDDVITLYNVFSALI 163
Query: 304 FDLKL-SLCDLIERGFTPSDLINPKKKKKSK 333
DL + L+E P P K + K
Sbjct: 164 GDLSAEQVLALMEESQHPKAFKMPFGKYRGK 194
>gi|345860951|ref|ZP_08813232.1| DNA polymerase III, alpha subunit, Gram-positive type
[Desulfosporosinus sp. OT]
gi|344325951|gb|EGW37448.1| DNA polymerase III, alpha subunit, Gram-positive type
[Desulfosporosinus sp. OT]
Length = 1448
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 37/199 (18%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T V D+ETTGFS E+I EI L G+ F VNPK+ +P V IT DM
Sbjct: 424 TYCVLDLETTGFSAVTEKITEIGIMKLKDGKVIDQFSCFVNPKKPIPARVVEVTNITDDM 483
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D ++ +IP LL +++ + VAHNA FD+ FL + Y+ ++
Sbjct: 484 V--KDAETIDRVIPKLLDFIEGS-------VLVAHNA-DFDMGFLKHNAKALGYDF--DY 531
Query: 245 LFMDTLTLARELM------KSG--GSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
++DTL+L++EL K G NL KV + AHRA+ DV+
Sbjct: 532 TYLDTLSLSKELFPDYKTYKLGRIAKNLGFKVEV--------------AHRALDDVDTTV 577
Query: 297 LILQRLTFDLKLSLCDLIE 315
+ + + LK + +E
Sbjct: 578 KVFKVMLEKLKQRGAETLE 596
>gi|126665661|ref|ZP_01736642.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
gi|126629595|gb|EBA00212.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
Length = 483
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 99/207 (47%), Gaps = 26/207 (12%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGIT 181
K T D+ETTG S +RI EI Q GE +QTLVNPK ++ + GI+
Sbjct: 9 KTTTFAFLDLETTGGSVATDRITEIGIQFWRAGECVGQWQTLVNPKTRISPFIEQLTGIS 68
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
MV D P ED+ L Q+ G ++FVAHNAR FD F+ EF R
Sbjct: 69 NAMVA--DAPLFEDIADEL------EQRLDG-VVFVAHNAR-FDYGFVKGEFRRLGRMFV 118
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL-----S 296
L T+ L+R L + ++ AL E +G+ V HRAM DV +
Sbjct: 119 AKVLC--TVKLSRRLYPEF-----RRHNMDALIERHGLQQV-QRHRAMGDVAAMLGFFEH 170
Query: 297 LILQRLTFDLKLSLCDLIERGFTPSDL 323
++ Q+ L+ ++C+L++R PS L
Sbjct: 171 VLAQQGEDTLETAICELLQRPSIPSHL 197
>gi|222529790|ref|YP_002573672.1| DNA polymerase III subunit alpha [Caldicellulosiruptor bescii DSM
6725]
gi|222456637|gb|ACM60899.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM
6725]
Length = 1402
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 21/183 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +V DIETTGF + +RIIEI + G+ F T V+P+ ++P + + GI DM
Sbjct: 389 TFVVVDIETTGFDSQRDRIIEIGAVKIENGQITERFSTFVDPEGKIPVRISELTGIYQDM 448
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V K P++ D I ++ + G +L VAHNA+ FD+ FL + C + ++
Sbjct: 449 VDK--APKLSDAI------LEFEKFASGSVL-VAHNAQ-FDIGFLKKAYQECG--IIFDY 496
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
++DTL L+R L+ S+ +KV+ E+ I L HRA +D + I L
Sbjct: 497 TYIDTLELSRRLLTDLSSHKLNKVA-----EFLNIEL-KHHHRADSDAETTAGIFISLVE 550
Query: 305 DLK 307
LK
Sbjct: 551 RLK 553
>gi|111224492|ref|YP_715286.1| hypothetical protein FRAAL5108 [Frankia alni ACN14a]
gi|111152024|emb|CAJ63748.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a]
Length = 580
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 94/214 (43%), Gaps = 18/214 (8%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
+T +V D+ETTG S I EI + GGE + TLV P +P + + GIT
Sbjct: 19 LTFVVVDLETTGTSAATSEITEIGAVRVRGGEVLAEMSTLVRPSAGIPPMVSVITGITDA 78
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P +++P L + + G +L VAHNA FD+ FL RC Y P
Sbjct: 79 MVAT--APAEAEVVPTFLEFAR------GAVL-VAHNA-PFDLGFLRAAAQRCGYP-PPA 127
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
W +DTL +AR L+ + SL L P HRA+AD +L L
Sbjct: 128 WEHLDTLRIARRLVSRDEAPDCRLASLARLFRSSTEPC----HRALADARATVDVLHGLF 183
Query: 304 FDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L + +E S ++P +++K L
Sbjct: 184 ERLGNAGVRTLEELHEYSARVSPAQRRKRYLADG 217
>gi|399528694|ref|YP_006560681.1| DNA polymerase III epsilon subunit [Croceibacter phage P2559S]
gi|392284409|gb|AFM54839.1| DNA polymerase III epsilon subunit [Croceibacter phage P2559S]
Length = 246
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 81/176 (46%), Gaps = 24/176 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDL-LGGENSTFQTLVNPKRQVPNA--HVHGITTDMVC 186
+ FD+ETTG + +RI++IA + GE T L+NP R +P A VHGIT +MV
Sbjct: 8 VFFDLETTGVNTSTDRIVQIAILKINTEGEQETANRLINPGRPIPKAATDVHGITDEMV- 66
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL- 245
D P + + L GGY N+ +FDVP LI EF+R E P
Sbjct: 67 -KDAPTFKQIAKSLFDIFDGCD-VGGY------NSDNFDVPLLIEEFNRAEIEYPAAGAA 118
Query: 246 --FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
F+ L L R++ S + Y G L G AH A+ DV + +L
Sbjct: 119 INFVAVLKLERKVN--------SHKLTDTYKRYTGKELDG-AHDALNDVRATAEVL 165
>gi|379795631|ref|YP_005325629.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872621|emb|CCE58960.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 1438
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKIHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|312127164|ref|YP_003992038.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
hydrothermalis 108]
gi|311777183|gb|ADQ06669.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
hydrothermalis 108]
Length = 1402
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 94/183 (51%), Gaps = 21/183 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +V DIETTGF + +RIIEI + G+ F T V+P+ ++P + + GI DM
Sbjct: 389 TFVVVDIETTGFDSQRDRIIEIGAVKIENGQITEKFSTFVDPEGKIPVRISELTGIYQDM 448
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V K P++ D I ++ + G +L VAHNA+ FD+ FL + C + ++
Sbjct: 449 VDK--APKLSDAI------LEFEKFASGSVL-VAHNAQ-FDIGFLKKAYQECG--IIFDY 496
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
++DTL L+R L+ S+ +KV+ E+ + L HRA +D + I L
Sbjct: 497 TYIDTLELSRRLLTDLSSHKLNKVA-----EFLNVEL-KHHHRADSDAETTAGIFISLVE 550
Query: 305 DLK 307
LK
Sbjct: 551 RLK 553
>gi|110808209|sp|P0C1P9.1|DPO3_STAAU RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus]
Length = 1435
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LTFDLK 307
+ +K
Sbjct: 579 MVQQMK 584
>gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A]
gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis
M23864:W2(grey)]
gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis RP62A]
gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 1436
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LTFDLK 307
+ +K
Sbjct: 579 MVQQMK 584
>gi|417656584|ref|ZP_12306267.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU028]
gi|417658908|ref|ZP_12308521.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU045]
gi|417909869|ref|ZP_12553602.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU037]
gi|418607678|ref|ZP_13170901.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU057]
gi|418609797|ref|ZP_13172931.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU065]
gi|418612174|ref|ZP_13175220.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU117]
gi|418626789|ref|ZP_13189385.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU126]
gi|418628948|ref|ZP_13191464.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU127]
gi|418664714|ref|ZP_13226180.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU081]
gi|419768080|ref|ZP_14294217.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-250]
gi|419770927|ref|ZP_14296989.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-K]
gi|420165201|ref|ZP_14671905.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM088]
gi|420182933|ref|ZP_14689066.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM049]
gi|420197154|ref|ZP_14702878.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM020]
gi|420202023|ref|ZP_14707618.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM018]
gi|420209458|ref|ZP_14714895.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM003]
gi|420214257|ref|ZP_14719536.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH05005]
gi|420216087|ref|ZP_14721309.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH05001]
gi|420220045|ref|ZP_14725035.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH04008]
gi|420221945|ref|ZP_14726870.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH08001]
gi|420224807|ref|ZP_14729645.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH06004]
gi|420227054|ref|ZP_14731827.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH05003]
gi|420229377|ref|ZP_14734083.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH04003]
gi|420231735|ref|ZP_14736380.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH051668]
gi|73919252|sp|Q5HPS7.2|DPO3_STAEQ RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU028]
gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU045]
gi|341652478|gb|EGS76266.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU037]
gi|374403795|gb|EHQ74790.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU057]
gi|374406133|gb|EHQ77036.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU065]
gi|374410160|gb|EHQ80921.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU081]
gi|374820056|gb|EHR84170.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU117]
gi|374831333|gb|EHR95075.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU126]
gi|374834942|gb|EHR98573.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU127]
gi|383361001|gb|EID38384.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-250]
gi|383362476|gb|EID39828.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-K]
gi|394236368|gb|EJD81902.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM088]
gi|394249396|gb|EJD94609.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM049]
gi|394265961|gb|EJE10607.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM020]
gi|394269996|gb|EJE14519.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM018]
gi|394278905|gb|EJE23217.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM003]
gi|394283622|gb|EJE27787.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH05005]
gi|394287052|gb|EJE31026.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH04008]
gi|394289976|gb|EJE33846.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH08001]
gi|394292537|gb|EJE36279.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH05001]
gi|394294210|gb|EJE37896.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH06004]
gi|394297555|gb|EJE41152.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH05003]
gi|394299143|gb|EJE42694.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH04003]
gi|394302277|gb|EJE45725.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH051668]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|420206417|ref|ZP_14711927.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM008]
gi|394278256|gb|EJE22573.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM008]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|420211846|ref|ZP_14717202.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM001]
gi|394280356|gb|EJE24637.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM001]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|418616700|ref|ZP_13179624.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU120]
gi|374820778|gb|EHR84854.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU120]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|418325812|ref|ZP_12937015.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU071]
gi|418411683|ref|ZP_12984949.1| DNA polymerase III polC-type [Staphylococcus epidermidis BVS058A4]
gi|365227558|gb|EHM68751.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU071]
gi|410891266|gb|EKS39063.1| DNA polymerase III polC-type [Staphylococcus epidermidis BVS058A4]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus C160]
gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus A017934/97]
gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
gi|415683854|ref|ZP_11449056.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00]
gi|418566700|ref|ZP_13131073.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21264]
gi|418582098|ref|ZP_13146176.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1605]
gi|418597669|ref|ZP_13161191.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21342]
gi|418603158|ref|ZP_13166549.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21345]
gi|418891897|ref|ZP_13446012.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1176]
gi|418900672|ref|ZP_13454729.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1214]
gi|418908975|ref|ZP_13462978.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG149]
gi|418917059|ref|ZP_13471018.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1267]
gi|418922846|ref|ZP_13476763.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1233]
gi|418982177|ref|ZP_13529885.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1242]
gi|56748683|sp|Q6GHH1.1|DPO3_STAAR RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus C160]
gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus A017934/97]
gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00]
gi|371969970|gb|EHO87408.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21264]
gi|374393731|gb|EHQ65035.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21342]
gi|374393887|gb|EHQ65190.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21345]
gi|377703140|gb|EHT27456.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1214]
gi|377704458|gb|EHT28767.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1242]
gi|377710508|gb|EHT34746.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1605]
gi|377731229|gb|EHT55286.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1176]
gi|377736169|gb|EHT60199.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1233]
gi|377750233|gb|EHT74171.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1267]
gi|377754013|gb|EHT77923.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG149]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|420191689|ref|ZP_14697600.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM023]
gi|394265840|gb|EJE10487.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM023]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus hominis SK119]
gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus hominis SK119]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDKFERFSNPNEKLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|417647401|ref|ZP_12297241.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU144]
gi|420167620|ref|ZP_14674272.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM087]
gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU144]
gi|394237648|gb|EJD83134.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM087]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
gi|418985846|ref|ZP_13533532.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1500]
gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
gi|377705664|gb|EHT29968.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1500]
Length = 1436
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LTFDLK 307
+ +K
Sbjct: 579 MVQQMK 584
>gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis SK135]
gi|417913434|ref|ZP_12557101.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU109]
gi|418624394|ref|ZP_13187069.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU125]
gi|420172737|ref|ZP_14679235.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM067]
gi|421607235|ref|ZP_16048481.1| DNA polymerase III PolC [Staphylococcus epidermidis AU12-03]
gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis SK135]
gi|341655716|gb|EGS79440.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU109]
gi|374827623|gb|EHR91484.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU125]
gi|394241414|gb|EJD86828.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM067]
gi|406657027|gb|EKC83420.1| DNA polymerase III PolC [Staphylococcus epidermidis AU12-03]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 55/2053]
gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 65-1322]
gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
68-397]
gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
E1410]
gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus M876]
gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
aureus subsp. aureus M899]
gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus C101]
gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus M809]
gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
aureus subsp. aureus M1015]
gi|384867851|ref|YP_005748047.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60]
gi|417887049|ref|ZP_12531188.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21195]
gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 55/2053]
gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 65-1322]
gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
68-397]
gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
E1410]
gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus M876]
gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus C101]
gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
aureus subsp. aureus M899]
gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus WBG10049]
gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
aureus subsp. aureus M1015]
gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus M809]
gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60]
gi|341858471|gb|EGS99261.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21195]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus]
Length = 1415
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LTFDLK 307
+ +K
Sbjct: 579 MVQQMK 584
>gi|418615515|ref|ZP_13178457.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU118]
gi|374816954|gb|EHR81145.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU118]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|291545334|emb|CBL18442.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
SR1/5]
Length = 1129
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 119/262 (45%), Gaps = 31/262 (11%)
Query: 51 GLEDQDSYTER---WSRRRITTGTEGSKKTIQSHKLKNIKFEATSTTINVNKTEISKIQR 107
G+ D + +R W + I G +QS N F+A + +++ +
Sbjct: 22 GVSDAKALVKRAYEWGHKAIAITDHG---VVQSFPEANHCFDAWGGCVP-KESDFKVLYG 77
Query: 108 IQHY---DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQ 163
++ Y D++ ++ +K +VFDIETTGFS RIIEI + G+ F
Sbjct: 78 MEAYLVDDLKGMVTNSKGQRLDGDFVVFDIETTGFSALTCRIIEIGAVKVEKGQITDRFS 137
Query: 164 TLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNA 221
T VNP+ +P + I MV D P +E+++P L + + + VAHNA
Sbjct: 138 TFVNPEVPIPFRIEQLTSINDSMVL--DAPVIEEVLPKFLEFCEG-------CVMVAHNA 188
Query: 222 RSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPL 281
FD+ F+I R + +++ ++DT+ +AR L+ + ++ L + + G+ L
Sbjct: 189 -DFDMSFIIENCKRQG--ISDDFTYVDTVGMARFLLPA-----LNRFKLDTVAKAVGVSL 240
Query: 282 VGSAHRAMADVNCLSLILQRLT 303
HRA+ D C + I R
Sbjct: 241 -DHHHRAVDDAACTAEIFVRFV 261
>gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus C427]
gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus C427]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|422745504|ref|ZP_16799443.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus MRSA131]
Length = 1436
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LTFDLK 307
+ +K
Sbjct: 579 MVQQMK 584
>gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819]
gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796]
gi|418931335|ref|ZP_13485176.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1750]
gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819]
gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796]
gi|377714617|gb|EHT38816.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1750]
gi|408423456|emb|CCJ10867.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
ST228]
gi|408425446|emb|CCJ12833.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
ST228]
gi|408427434|emb|CCJ14797.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
ST228]
gi|408429421|emb|CCJ26586.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
ST228]
gi|408431409|emb|CCJ18724.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
ST228]
gi|408433403|emb|CCJ20688.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
ST228]
gi|408435394|emb|CCJ22654.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
ST228]
gi|408437379|emb|CCJ24622.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
ST228]
Length = 1436
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LTFDLK 307
+ +K
Sbjct: 579 MVQQMK 584
>gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 1410
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 100/205 (48%), Gaps = 28/205 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTG S N+ IIEI + + TF+T VNP+ + N + GIT DMV
Sbjct: 400 VVFDIETTGLSSINDSIIEIGAVKIKDCQIVDTFETFVNPQIHISNFITKLTGITDDMVK 459
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ P +++++P L ++K VAHNA +FDV F+ + EV N L
Sbjct: 460 R--YPPIDEVLPKFLEFIKGST-------LVAHNA-NFDVTFIKTKAKNLGIEVDNPVL- 508
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
DTL L+R + + NL + L + ++ G+ L + HRA+ D + I +
Sbjct: 509 -DTLELSRHMYE----NLKN-YKLDTVAQHLGVSL-ENHHRAVDDARATAEIFLK----- 556
Query: 307 KLSLCDLIERGFTPSDLINPKKKKK 331
S+ L E G + IN K K
Sbjct: 557 --SINKLKENGIEKVNEINSYLKNK 579
>gi|424768052|ref|ZP_18195345.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus CM05]
gi|402348689|gb|EJU83668.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus CM05]
Length = 1436
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LTFDLK 307
+ +K
Sbjct: 579 MVQQMK 584
>gi|420174968|ref|ZP_14681414.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM061]
gi|394244501|gb|EJD89843.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM061]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|418329398|ref|ZP_12940466.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis 14.1.R1.SE]
gi|365230433|gb|EHM71528.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis 14.1.R1.SE]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|416839312|ref|ZP_11902706.1| DNA polymerase III PolC [Staphylococcus aureus O11]
gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11]
Length = 1436
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LTFDLK 307
+ +K
Sbjct: 579 MVQQMK 584
>gi|302387397|ref|YP_003823219.1| DNA polymerase III subunit epsilon [Clostridium saccharolyticum
WM1]
gi|302198025|gb|ADL05596.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
WM1]
Length = 222
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 21/166 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNA--HVHGITTDMVC 186
+VFD+ETTG S + I+EI+ + G E + TLVNP +P ++GIT DMV
Sbjct: 19 VVFDLETTGISPAEDSILEISAIKVKGHEPVAELNTLVNPGTHIPAGATRINGITDDMV- 77
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC-SYEVPNNWL 245
P +++++P L +++ + V HN +SFD+ FL EVPN+++
Sbjct: 78 -KAAPGLKEVLPDFLSFIEGE-------ILVGHNIQSFDLLFLYRAAQELFGKEVPNDYV 129
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
DTL +A+ + G + + +S Y+ I G AHRA++D
Sbjct: 130 --DTLFMAKTTLPQLGRHRLTDIS-----AYFHINTEG-AHRALSD 167
>gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL]
gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754]
gi|418906200|ref|ZP_13460227.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIGC345D]
gi|56749834|sp|P68852.1|DPO3_STAAW RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|110808208|sp|Q2G1Z8.1|DPO3_STAA8 RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|123486180|sp|Q2FHH4.1|DPO3_STAA3 RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus]
gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus COL]
gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754]
gi|377765500|gb|EHT89350.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIGC345D]
Length = 1436
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LTFDLK 307
+ +K
Sbjct: 579 MVQQMK 584
>gi|420234423|ref|ZP_14738986.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH051475]
gi|394304226|gb|EJE47633.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIH051475]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|418634105|ref|ZP_13196503.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU129]
gi|420191241|ref|ZP_14697174.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM037]
gi|420204186|ref|ZP_14709746.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM015]
gi|374838097|gb|EHS01654.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU129]
gi|394257842|gb|EJE02747.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM037]
gi|394274200|gb|EJE18625.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM015]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|387602541|ref|YP_005734062.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus ST398]
gi|404478605|ref|YP_006710035.1| DNA polymerase III PolC-type [Staphylococcus aureus 08BA02176]
gi|418309886|ref|ZP_12921437.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21331]
gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus ST398]
gi|365238009|gb|EHM78848.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21331]
gi|404440094|gb|AFR73287.1| DNA polymerase III PolC-type [Staphylococcus aureus 08BA02176]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2]
gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
MSSA476]
gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
Newman]
gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A5948]
gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
D30]
gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
930918-3]
gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus A9765]
gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132]
gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|379014455|ref|YP_005290691.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus VC40]
gi|384861858|ref|YP_005744578.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|384869799|ref|YP_005752513.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131]
gi|415686456|ref|ZP_11450545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01]
gi|417649479|ref|ZP_12299278.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21189]
gi|417797228|ref|ZP_12444426.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21305]
gi|418281409|ref|ZP_12894220.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21178]
gi|418284632|ref|ZP_12897349.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21209]
gi|418570858|ref|ZP_13135119.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21283]
gi|418579098|ref|ZP_13143193.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1114]
gi|418599681|ref|ZP_13163161.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21343]
gi|418642820|ref|ZP_13205006.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-24]
gi|418647498|ref|ZP_13209562.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-88]
gi|418649632|ref|ZP_13211660.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-91]
gi|418657924|ref|ZP_13219675.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-111]
gi|418873531|ref|ZP_13427826.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-125]
gi|418903477|ref|ZP_13457518.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1770]
gi|418911871|ref|ZP_13465854.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG547]
gi|418925501|ref|ZP_13479403.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG2018]
gi|418928524|ref|ZP_13482410.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1612]
gi|418934167|ref|ZP_13487990.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIGC128]
gi|418948859|ref|ZP_13501141.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-157]
gi|418955508|ref|ZP_13507448.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-189]
gi|418988086|ref|ZP_13535759.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1835]
gi|424785096|ref|ZP_18211899.1| DNA polymerase III alpha subunit [Staphylococcus aureus CN79]
gi|440706022|ref|ZP_20886771.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21282]
gi|440734710|ref|ZP_20914322.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus DSM
20231]
gi|448741781|ref|ZP_21723738.1| DNA polymerase III PolC-type [Staphylococcus aureus KT/314250]
gi|448743336|ref|ZP_21725245.1| DNA polymerase III PolC-type [Staphylococcus aureus KT/Y21]
gi|56748669|sp|Q6G9U9.1|DPO3_STAAS RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|73919251|sp|Q5HGG7.2|DPO3_STAAC RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|172049022|sp|A6QGG4.1|DPO3_STAAE RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
subsp. aureus MW2]
gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
MSSA476]
gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
subsp. aureus str. Newman]
gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A5948]
gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
930918-3]
gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
D30]
gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus A9765]
gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01]
gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131]
gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21189]
gi|334267276|gb|EGL85740.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21305]
gi|365165231|gb|EHM57059.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21178]
gi|365173180|gb|EHM63767.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21209]
gi|371983038|gb|EHP00186.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21283]
gi|374363152|gb|AEZ37257.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus VC40]
gi|374396339|gb|EHQ67580.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21343]
gi|375015933|gb|EHS09577.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-24]
gi|375029464|gb|EHS22791.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-88]
gi|375030005|gb|EHS23330.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-91]
gi|375039694|gb|EHS32613.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-111]
gi|375366068|gb|EHS70080.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-125]
gi|375370575|gb|EHS74379.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-157]
gi|375370991|gb|EHS74783.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-189]
gi|377697125|gb|EHT21480.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1114]
gi|377719874|gb|EHT44044.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1835]
gi|377725249|gb|EHT49364.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG547]
gi|377738436|gb|EHT62445.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1612]
gi|377742492|gb|EHT66477.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1770]
gi|377744570|gb|EHT68547.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG2018]
gi|377770910|gb|EHT94669.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIGC128]
gi|421956506|gb|EKU08835.1| DNA polymerase III alpha subunit [Staphylococcus aureus CN79]
gi|436431738|gb|ELP29091.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus DSM
20231]
gi|436507553|gb|ELP43233.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21282]
gi|445547419|gb|ELY15688.1| DNA polymerase III PolC-type [Staphylococcus aureus KT/314250]
gi|445563265|gb|ELY19427.1| DNA polymerase III PolC-type [Staphylococcus aureus KT/Y21]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|418312404|ref|ZP_12923913.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21334]
gi|365238049|gb|EHM78886.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21334]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|417910685|ref|ZP_12554401.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU105]
gi|418622177|ref|ZP_13184933.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU123]
gi|420187532|ref|ZP_14693552.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM039]
gi|341654873|gb|EGS78609.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU105]
gi|374827552|gb|EHR91414.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU123]
gi|394255974|gb|EJE00910.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM039]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|417653221|ref|ZP_12302955.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21193]
gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21193]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus D139]
gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
H19]
gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus D139]
gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
H19]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|126435878|ref|YP_001071569.1| hypothetical protein Mjls_3300 [Mycobacterium sp. JLS]
gi|126235678|gb|ABN99078.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS]
Length = 630
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 102/220 (46%), Gaps = 29/220 (13%)
Query: 128 TAIVFDIETTGFSRENER---IIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GIT 181
T +V D+ETTG ER I EI + GGE TLV+P R +P V GIT
Sbjct: 29 TFVVVDLETTGGRATGERPDAITEIGAVKVRGGEVLGELATLVDPGRAIPPQIVSLTGIT 88
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
T MVC PR+E ++P L + + G +L VAHNA FD+ FL +C P
Sbjct: 89 TAMVCA--APRIESVLPAFLEFAR------GSVL-VAHNA-GFDIGFLRAAAEQCGLTWP 138
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSL 297
+ T+ LAR ++ PS V L AL + + HRA+ D V+ L
Sbjct: 139 RPPVLC-TVKLARRVLTR--DEAPS-VRLSALAQLFRAKTT-PTHRALDDARATVDVLHG 193
Query: 298 ILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
+++R+ + DL R + P + P +++ +L
Sbjct: 194 LIERIGNQGVHTYTDL--RAYLPD--VTPAQRRNRRLADG 229
>gi|421150213|ref|ZP_15609869.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|394329603|gb|EJE55705.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
Newbould 305]
Length = 1436
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LTFDLK 307
+ +K
Sbjct: 579 MVQQMK 584
>gi|418646072|ref|ZP_13208187.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-55]
gi|443639768|ref|ZP_21123769.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21196]
gi|375021538|gb|EHS15034.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-55]
gi|443406419|gb|ELS64999.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21196]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|418630371|ref|ZP_13192853.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU128]
gi|374837912|gb|EHS01470.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU128]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|385781492|ref|YP_005757663.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp.
aureus 11819-97]
gi|418322026|ref|ZP_12933365.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus VCU006]
gi|418572257|ref|ZP_13136469.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21333]
gi|418875200|ref|ZP_13429460.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIGC93]
gi|364522481|gb|AEW65231.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 11819-97]
gi|365224641|gb|EHM65906.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus VCU006]
gi|371984741|gb|EHP01850.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21333]
gi|377770260|gb|EHT94022.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIGC93]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|417901805|ref|ZP_12545681.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21266]
gi|341845644|gb|EGS86846.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21266]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|384547507|ref|YP_005736760.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp.
aureus ED133]
gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus ED133]
Length = 1436
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LTFDLK 307
+ +K
Sbjct: 579 MVQQMK 584
>gi|418897802|ref|ZP_13451872.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIGC341D]
gi|377760837|gb|EHT84713.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIGC341D]
Length = 1428
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 408 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 467
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 468 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 517
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 518 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 570
Query: 302 LTFDLK 307
+ +K
Sbjct: 571 MVQQMK 576
>gi|418559336|ref|ZP_13123882.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21252]
gi|371975627|gb|EHO92921.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21252]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|417903430|ref|ZP_12547277.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21269]
gi|341850051|gb|EGS91184.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21269]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|416124336|ref|ZP_11595332.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis FRI909]
gi|420176900|ref|ZP_14683294.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM057]
gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis FRI909]
gi|394251807|gb|EJD96883.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM057]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|379020974|ref|YP_005297636.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp.
aureus M013]
gi|418951023|ref|ZP_13503152.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-160]
gi|359830283|gb|AEV78261.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp.
aureus M013]
gi|375374842|gb|EHS78461.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-160]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|384550021|ref|YP_005739273.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp.
aureus JKD6159]
gi|418561389|ref|ZP_13125880.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21262]
gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus JKD6159]
gi|371977600|gb|EHO94864.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21262]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|387142872|ref|YP_005731265.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
TW20]
gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
TW20]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228]
gi|32469713|sp|Q8CPG6.1|DPO3_STAES RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus
epidermidis ATCC 12228]
Length = 1442
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 422 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 481
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 482 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 531
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 532 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 584
Query: 302 LTFDLK 307
+ +K
Sbjct: 585 MVQQMK 590
>gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50]
gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315]
gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9]
gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1]
gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3]
gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
A9719]
gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A9299]
gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A8115]
gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A6300]
gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A6224]
gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A5937]
gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus A8117]
gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus A10102]
gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1]
gi|384864491|ref|YP_005749850.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|387150407|ref|YP_005741971.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
gi|415691114|ref|ZP_11453353.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03]
gi|417650900|ref|ZP_12300663.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21172]
gi|417802668|ref|ZP_12449725.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21318]
gi|417892206|ref|ZP_12536260.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21201]
gi|418424405|ref|ZP_12997527.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS1]
gi|418427400|ref|ZP_13000412.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS2]
gi|418430240|ref|ZP_13003156.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418433206|ref|ZP_13005983.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS4]
gi|418436877|ref|ZP_13008679.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS5]
gi|418439749|ref|ZP_13011456.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS6]
gi|418442801|ref|ZP_13014403.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS7]
gi|418445860|ref|ZP_13017336.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS8]
gi|418448804|ref|ZP_13020196.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451628|ref|ZP_13022962.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454684|ref|ZP_13025946.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457560|ref|ZP_13028763.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418569039|ref|ZP_13133379.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21272]
gi|418637949|ref|ZP_13200252.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-3]
gi|418654661|ref|ZP_13216557.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-99]
gi|418661532|ref|ZP_13223117.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-122]
gi|418878113|ref|ZP_13432348.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1165]
gi|418880943|ref|ZP_13435162.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1213]
gi|418883871|ref|ZP_13438066.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1769]
gi|418886526|ref|ZP_13440674.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1150]
gi|418894964|ref|ZP_13449059.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1057]
gi|418914362|ref|ZP_13468334.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIGC340D]
gi|418991128|ref|ZP_13538789.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1096]
gi|419784964|ref|ZP_14310722.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-M]
gi|443636909|ref|ZP_21121002.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21236]
gi|54036992|sp|P63982.1|DPO3_STAAN RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|54040953|sp|P63981.1|DPO3_STAAM RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|166217451|sp|A7X1P4.1|DPO3_STAA1 RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
subsp. aureus N315]
gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
subsp. aureus Mu50]
gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus
aureus subsp. aureus JH9]
gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus JH1]
gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
subsp. aureus Mu3]
gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
A9719]
gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A9299]
gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A8115]
gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A6300]
gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A6224]
gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A5937]
gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus A10102]
gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus A8117]
gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03]
gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21172]
gi|334274304|gb|EGL92626.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21318]
gi|341858173|gb|EGS98974.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21201]
gi|371978224|gb|EHO95474.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21272]
gi|375014486|gb|EHS08167.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-99]
gi|375023173|gb|EHS16636.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-3]
gi|375038714|gb|EHS31675.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-122]
gi|377694235|gb|EHT18600.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1165]
gi|377694770|gb|EHT19134.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1057]
gi|377714958|gb|EHT39156.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1769]
gi|377723250|gb|EHT47375.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1096]
gi|377725479|gb|EHT49592.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1150]
gi|377731836|gb|EHT55889.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1213]
gi|377757864|gb|EHT81752.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIGC340D]
gi|383363565|gb|EID40897.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-M]
gi|387718635|gb|EIK06593.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387718987|gb|EIK06943.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS2]
gi|387720312|gb|EIK08224.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS1]
gi|387725646|gb|EIK13250.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS4]
gi|387727981|gb|EIK15481.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS5]
gi|387730711|gb|EIK18072.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS6]
gi|387735788|gb|EIK22898.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS8]
gi|387737466|gb|EIK24532.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS7]
gi|387738020|gb|EIK25074.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS9]
gi|387744509|gb|EIK31273.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS10]
gi|387745799|gb|EIK32549.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387747292|gb|EIK34001.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
VRS11b]
gi|443406886|gb|ELS65456.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21236]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|421834325|ref|ZP_16269398.1| DNA polymerase III PolC, partial [Clostridium botulinum
CFSAN001627]
gi|409744292|gb|EKN42914.1| DNA polymerase III PolC, partial [Clostridium botulinum
CFSAN001627]
Length = 250
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 24/209 (11%)
Query: 99 KTEISKIQRIQHYDIEQ---IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLL 155
K I I I+ Y ++ I+++ D T +VFD+ETTGFS +N++IIEI +
Sbjct: 48 KGNIKVIYGIEAYLVDDGVPIVSKAGDKTIEDTFVVFDLETTGFSSKNDKIIEIGAVKIE 107
Query: 156 GGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGG 212
G+ F VNPKR +P+ + IT +MV D ++ ++P + ++ G
Sbjct: 108 KGKIVDRFSEFVNPKRTIPDKITELTSITDNMV--DDKETIDKILPRFIDFI-------G 158
Query: 213 YILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQA 272
+ VAHNA SFDV F+ E N+ MDT+TL+R L + L
Sbjct: 159 DSVVVAHNA-SFDVSFINKNCKDLKIEFENS--VMDTVTLSRFLFPE-----LKRHKLNV 210
Query: 273 LREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ ++ GI L + HRA+ D + IL +
Sbjct: 211 IAKHLGISL-ENHHRAVDDAKATADILLK 238
>gi|420185432|ref|ZP_14691524.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM040]
gi|394254418|gb|EJD99387.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis NIHLM040]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|418317760|ref|ZP_12929176.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21232]
gi|365245028|gb|EHM85680.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21232]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|170754900|ref|YP_001781966.1| DNA polymerase III PolC [Clostridium botulinum B1 str. Okra]
gi|169120112|gb|ACA43948.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum B1 str. Okra]
Length = 1432
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 24/209 (11%)
Query: 99 KTEISKIQRIQHYDIEQ---IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLL 155
K I I I+ Y ++ I+++ D T +VFD+ETTGFS +N++IIEI +
Sbjct: 385 KGNIKVIYGIEAYLVDDGVPIVSKAGDKTIEDTFVVFDLETTGFSSKNDKIIEIGAVKIE 444
Query: 156 GGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGG 212
G+ F VNP+R +P+ + IT DMV D ++ ++P + ++ G
Sbjct: 445 KGKIVDRFSEFVNPERSIPDKITELTSITDDMV--DDKEAIDKILPRFIEFI-------G 495
Query: 213 YILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQA 272
+ VAHNA +FD F+ E N+ MDT+TL+R L + L
Sbjct: 496 DSVVVAHNA-AFDASFINKNCKDLKIEFKNS--VMDTVTLSRFLFPE-----LKRYKLNV 547
Query: 273 LREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ ++ GI L + HRA+ D + IL +
Sbjct: 548 IAKHLGISL-ENHHRAVDDAKATADILLK 575
>gi|417898387|ref|ZP_12542307.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21259]
gi|341848420|gb|EGS89583.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21259]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|418283086|ref|ZP_12895843.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21202]
gi|365168683|gb|EHM60021.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21202]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|386830799|ref|YP_006237453.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|417797928|ref|ZP_12445114.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21310]
gi|418656587|ref|ZP_13218392.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-105]
gi|334277050|gb|EGL95289.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21310]
gi|375033238|gb|EHS26442.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus IS-105]
gi|385196191|emb|CCG15812.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
HO 5096 0412]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|418920343|ref|ZP_13474276.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIGC348]
gi|377765702|gb|EHT89551.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIGC348]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|418993885|ref|ZP_13541521.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG290]
gi|377745935|gb|EHT69910.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG290]
Length = 1436
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LTFDLK 307
+ +K
Sbjct: 579 MVQQMK 584
>gi|418317206|ref|ZP_12928630.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21340]
gi|365239578|gb|EHM80380.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21340]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|418324147|ref|ZP_12935398.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus pettenkoferi VCU012]
gi|365227644|gb|EHM68836.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus pettenkoferi VCU012]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 21/186 (11%)
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--H 176
++DL K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ + +
Sbjct: 414 DRDL-KSATYVVFDVETTGLSNQYDKIIELAAVKVHDGEIIDKFERFSNPHEKLSDTIKN 472
Query: 177 VHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC 236
+ IT DM+ D P ++D++ +V G +FVAHNA SFD+ F+ + R
Sbjct: 473 LTHITDDMLV--DAPEIDDVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERA 522
Query: 237 SYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
N + +DTL L+R + G K L L + YG+ L HRA+ D +
Sbjct: 523 GLGESTNGV-IDTLELSRTVNTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATA 575
Query: 297 LILQRL 302
I ++
Sbjct: 576 YIFIKM 581
>gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus hominis subsp. hominis C80]
gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus hominis subsp. hominis C80]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDKFERFSNPHEKLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
TCH130]
gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
TCH130]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|387780372|ref|YP_005755170.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
LGA251]
gi|344177474|emb|CCC87943.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
LGA251]
Length = 1438
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|386728950|ref|YP_006195333.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp.
aureus 71193]
gi|418980029|ref|ZP_13527817.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp.
aureus DR10]
gi|379992192|gb|EIA13649.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp.
aureus DR10]
gi|384230243|gb|AFH69490.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp.
aureus 71193]
Length = 1442
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 422 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 481
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 482 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 531
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 532 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 584
Query: 302 LTFDLK 307
+ +K
Sbjct: 585 MVQQMK 590
>gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus A9635]
gi|417891725|ref|ZP_12535782.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21200]
gi|418307892|ref|ZP_12919565.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21194]
gi|418889057|ref|ZP_13443193.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1524]
gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus A9635]
gi|341851011|gb|EGS91940.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21200]
gi|365243007|gb|EHM83700.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21194]
gi|377754567|gb|EHT78476.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus CIG1524]
Length = 1438
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
Length = 1442
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 422 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 481
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 482 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 531
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 532 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 584
Query: 302 LTFDLK 307
+ +K
Sbjct: 585 MVQQMK 590
>gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
Length = 1442
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 422 KDATYVVFDVETTGLSNQYDKIIELAAVKVHDGEIIDKFERFSNPHERLSETIINLTHIT 481
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 482 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 531
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 532 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 584
Query: 302 LTFDLK 307
+ +K
Sbjct: 585 MVQQMK 590
>gi|386714371|ref|YP_006180694.1| DNA polymerase III (gram-positive type) [Halobacillus halophilus
DSM 2266]
gi|384073927|emb|CCG45420.1| DNA polymerase III (gram-positive type) [Halobacillus halophilus
DSM 2266]
Length = 1430
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 21/188 (11%)
Query: 119 ENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHV 177
+++DL V +VFD+ETTG S ++IIE+A + GGE F++ NP + + V
Sbjct: 407 QDRDLESDVY-VVFDVETTGLSAVYDKIIELAAVKVRGGEIIDRFESFANPHQALSQTTV 465
Query: 178 H--GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSR 235
GIT DMV D P +E+++ ++++ + VAHNA SFD+ FL F+
Sbjct: 466 DLTGITDDMV--KDAPEIEEVLKDFHQWMEND-------ILVAHNA-SFDMGFLNAGFTA 515
Query: 236 CSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL 295
YE N + +DTL LAR L+ ++ L L + + I L HRA+ D
Sbjct: 516 IGYEKAQNPV-IDTLELARFLVPELKNH-----RLNTLCKKFDIELT-QHHRAIYDAEAT 568
Query: 296 SLILQRLT 303
+L +L
Sbjct: 569 GYLLWKLV 576
>gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
Length = 1442
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 422 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 481
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 482 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 531
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 532 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 584
Query: 302 LTFDLK 307
+ +K
Sbjct: 585 MVQQMK 590
>gi|403386829|ref|ZP_10928886.1| DNA polymerase III PolC [Clostridium sp. JC122]
Length = 1375
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 99/202 (49%), Gaps = 31/202 (15%)
Query: 116 IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN 174
I EN++L + +VFD+ETTGFS EN+ IIEI + + F VNP + +P
Sbjct: 352 IADENRNLNDDI--VVFDLETTGFSSENDSIIEIGAVKVRDNQIVDRFNEFVNPNKSIPY 409
Query: 175 --AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINE 232
+ GIT DMV D +E ++P L +V G + AHNA FD F+ +
Sbjct: 410 KITELTGITNDMV--KDADPIESVLPKFLEFV-------GDSMVAAHNA-PFDTSFIKSN 459
Query: 233 FSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD- 291
+ + E N+ MDT+ LA+ L + L + ++ GI L + HRA+ D
Sbjct: 460 CKKINVEFKNS--IMDTIPLAKFLFPD-----LKRYKLNTICKHIGISL-ENHHRAVDDA 511
Query: 292 -------VNCLSLILQRLTFDL 306
++CL ++ ++ FD+
Sbjct: 512 KATAEIVLHCLEMLKEKEIFDV 533
>gi|342732401|ref|YP_004771240.1| DNA polymerase III subunit alpha [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|342329856|dbj|BAK56498.1| DNA polymerase III, alpha subunit [Candidatus Arthromitus sp.
SFB-mouse-Japan]
Length = 1397
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 98/203 (48%), Gaps = 27/203 (13%)
Query: 120 NKDLAKLV--TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN-- 174
N D K + T +VFDIETTGFS NE+IIEI ++ GE F T VNP+ +P
Sbjct: 371 NDDFGKTINDTFVVFDIETTGFSNVNEKIIEIGAVKIINGEIVDEFSTFVNPEMNIPYKI 430
Query: 175 AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFS 234
+ I+ +MV P +E++I + G IL VAHN FD+ F+ +
Sbjct: 431 TELTSISNEMVAG--APIIENIIGEFYDFC------SGAIL-VAHNI-DFDMSFIRRNGN 480
Query: 235 RCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNC 294
+ Y N+ L DT+ + + L + L + ++ IPL + HRA+ D
Sbjct: 481 KFGYSFKNSLL--DTIDICKFLFPE-----LKRYRLNVVAKHLAIPL-DNHHRAVDDAKA 532
Query: 295 LSLIL----QRLTFDLKLSLCDL 313
++IL +RL LSL DL
Sbjct: 533 TAMILIKCFERLKSQEILSLEDL 555
>gi|312621985|ref|YP_004023598.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202452|gb|ADQ45779.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
kronotskyensis 2002]
Length = 1402
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 21/184 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +V DIETTGF + ++IIEI + G+ F T V+P+ ++P + + GI DM
Sbjct: 389 TFVVVDIETTGFDSQRDKIIEIGAVKIENGQIIERFSTFVDPEGKIPVRISELTGIYQDM 448
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V K P++ D I ++ + G IL VAHNA+ FD+ FL + C + ++
Sbjct: 449 VDK--APKLNDAI------LEFEKFASGSIL-VAHNAQ-FDIGFLKKAYHECG--IIFDY 496
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
++DTL L+R L+ S+ +KV+ E+ + L HRA +D + I L
Sbjct: 497 TYIDTLELSRRLLTDLSSHKLNKVA-----EFLNVEL-KHHHRADSDAETTAGIFTSLLE 550
Query: 305 DLKL 308
LKL
Sbjct: 551 KLKL 554
>gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|422742381|ref|ZP_16796387.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus MRSA177]
gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus MRSA177]
Length = 1442
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 422 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 481
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 482 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 531
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 532 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 584
Query: 302 LTFDLK 307
+ +K
Sbjct: 585 MVQQMK 590
>gi|384455810|ref|YP_005668405.1| DNA polymerase III PolC [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417962473|ref|ZP_12604674.1| DNA polymerase III, alpha subunit [Candidatus Arthromitus sp.
SFB-3]
gi|418016186|ref|ZP_12655751.1| DNA polymerase III, alpha subunit [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372668|ref|ZP_12964760.1| DNA polymerase III, alpha subunit [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|345506521|gb|EGX28815.1| DNA polymerase III, alpha subunit [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984153|dbj|BAK79829.1| DNA polymerase III PolC [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380337561|gb|EIA26598.1| DNA polymerase III, alpha subunit [Candidatus Arthromitus sp.
SFB-3]
gi|380342337|gb|EIA30782.1| DNA polymerase III, alpha subunit [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 1397
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 98/203 (48%), Gaps = 27/203 (13%)
Query: 120 NKDLAKLV--TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN-- 174
N D K + T +VFDIETTGFS NE+IIEI ++ GE F T VNP+ +P
Sbjct: 371 NDDFGKTINDTFVVFDIETTGFSNVNEKIIEIGAVKIINGEIVDEFSTFVNPEMNIPYKI 430
Query: 175 AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFS 234
+ I+ +MV P +E++I + G IL VAHN FD+ F+ +
Sbjct: 431 TELTSISNEMVAG--APIIENIIGEFYDFC------SGAIL-VAHNI-DFDMSFIRRNGN 480
Query: 235 RCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNC 294
+ Y N+ L DT+ + + L + L + ++ IPL + HRA+ D
Sbjct: 481 KFGYSFKNSLL--DTIDICKFLFPE-----LKRYRLNVVAKHLAIPL-DNHHRAVDDAKA 532
Query: 295 LSLIL----QRLTFDLKLSLCDL 313
++IL +RL LSL DL
Sbjct: 533 TAMILIKCFERLKSQEILSLEDL 555
>gi|302872252|ref|YP_003840888.1| DNA polymerase III subunit alpha [Caldicellulosiruptor obsidiansis
OB47]
gi|302575111|gb|ADL42902.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
OB47]
Length = 1402
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 94/183 (51%), Gaps = 21/183 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +V DIETTGF + +RIIEI + G+ F T V+P+ ++P + + GI DM
Sbjct: 389 TFVVVDIETTGFDSQRDRIIEIGAVKIENGQITERFSTFVDPEGKIPVRISELTGIYQDM 448
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V K P++ D I ++ + G +L VAHNA+ FD+ FL + C + ++
Sbjct: 449 VDK--APKLSDAI------LEFERFASGSVL-VAHNAQ-FDIGFLKKAYQECG--IIFDY 496
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
++DTL L+R L+ S+ +KV+ E+ + L HRA +D + I L
Sbjct: 497 TYIDTLELSRRLLTDLSSHKLNKVA-----EFLNVEL-KHHHRADSDAETTANIFISLVE 550
Query: 305 DLK 307
LK
Sbjct: 551 RLK 553
>gi|373457083|ref|ZP_09548850.1| DNA polymerase III, epsilon subunit [Caldithrix abyssi DSM 13497]
gi|371718747|gb|EHO40518.1| DNA polymerase III, epsilon subunit [Caldithrix abyssi DSM 13497]
Length = 993
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 20/176 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQV-PNA-HVHGITTDMVC 186
+VFD+ETTG + I+EIA + GE TF+TLVNP+ ++ P A VH I+ V
Sbjct: 605 VVFDLETTGNNPHRAGIVEIAAVKVREGEIVETFETLVNPQMEIDPEAQQVHHISDKDV- 663
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ P ++ ++P L ++ G L +AHN +FD L + + P N +
Sbjct: 664 -QNAPTIDKVLPDFLQFI-------GEDLLIAHNGYAFDFIILDRYIRELNLKKPRNVRY 715
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
D+L +AR L + K S+ AL Y + G+ HRA+ DV L+LI + L
Sbjct: 716 -DSLIMARNLFPN------EKNSIDALAYRYKLD-TGTRHRALDDVKVLNLIFRIL 763
>gi|331090692|ref|ZP_08339541.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
gi|330400106|gb|EGG79757.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
Length = 1487
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 95/195 (48%), Gaps = 22/195 (11%)
Query: 117 IAENKDLAKLVTA-IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN 174
IA N+D L A +VFDIETTGFS ++IIEI + G+ S + T VNP+ +P
Sbjct: 439 IAVNEDNQTLDDAFVVFDIETTGFSSVKDKIIEIGAVKVENGKIVSRYSTFVNPEVPIPF 498
Query: 175 --AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINE 232
+ IT MV D P++E ++P + YV G + VAHNA FDV F+
Sbjct: 499 EITKLTSITDAMVI--DAPKIETVLPEFMEYV-------GDAVLVAHNA-GFDVGFIEEN 548
Query: 233 FSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
R E +DT+ LAR L+ + S+ L + + GI L + HRA+ D
Sbjct: 549 CRRLGME--RKLTSVDTVALARVLLPT-----LSRYKLNIVAKTLGISL-ENHHRAVDDA 600
Query: 293 NCLSLILQRLTFDLK 307
+ I + LK
Sbjct: 601 GATAEIFVKFVEMLK 615
>gi|359424895|ref|ZP_09216001.1| DNA polymerase III epsilon subunit [Gordonia amarae NBRC 15530]
gi|358239797|dbj|GAB05583.1| DNA polymerase III epsilon subunit [Gordonia amarae NBRC 15530]
Length = 577
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 89/182 (48%), Gaps = 24/182 (13%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTD 183
T +V D+ETTG S ++RI EI + GGE F TLV+P +P V GIT
Sbjct: 32 ATLVVVDLETTGGSPVDDRITEIGAVKVRGGEVIGEFATLVDPGMPIPPQIVSLTGITEA 91
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV D PR + L + + G IL VAHNAR FD+ FL RC+ +
Sbjct: 92 MVH--DAPRDSEAFLSFLEFAR------GSIL-VAHNAR-FDMGFL----RRCAERLHVR 137
Query: 244 WLF---MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
W F + T+TLAR ++ PS V L AL E + + V HRA+ D +L
Sbjct: 138 WPFPAPLCTVTLARRILSR--DEAPS-VRLSALAELFDV-TVRPTHRALDDARATVEVLH 193
Query: 301 RL 302
RL
Sbjct: 194 RL 195
>gi|89897057|ref|YP_520544.1| hypothetical protein DSY4311 [Desulfitobacterium hafniense Y51]
gi|89336505|dbj|BAE86100.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 1447
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 21/169 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T V D+ETTGFS E+I EI + GG+ F VNP++ +P V IT DM
Sbjct: 423 TYCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQFGCFVNPEKPIPARVVEVTNITDDM 482
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D ++ + P +L++++ + VAHNA FD+ FL + Y+ ++
Sbjct: 483 V--RDAETIDQVFPKILNFIEGS-------VLVAHNA-DFDMGFLKHNAKVLGYDF--DY 530
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN 293
++DTL+LA+EL + L + + GI V AHRA+ DV
Sbjct: 531 TYLDTLSLAKELFPDYKT-----YKLGRIAKNLGIK-VEVAHRALDDVG 573
>gi|219667072|ref|YP_002457507.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense
DCB-2]
gi|423074957|ref|ZP_17063676.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense
DP7]
gi|219537332|gb|ACL19071.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense
DCB-2]
gi|361853906|gb|EHL06021.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense
DP7]
Length = 1447
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 21/169 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T V D+ETTGFS E+I EI + GG+ F VNP++ +P V IT DM
Sbjct: 423 TYCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQFGCFVNPEKPIPARVVEVTNITDDM 482
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D ++ + P +L++++ + VAHNA FD+ FL + Y+ ++
Sbjct: 483 V--RDAETIDQVFPKILNFIEGS-------VLVAHNA-DFDMGFLKHNAKVLGYDF--DY 530
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN 293
++DTL+LA+EL + L + + GI V AHRA+ DV
Sbjct: 531 TYLDTLSLAKELFPDYKT-----YKLGRIAKNLGIK-VEVAHRALDDVG 573
>gi|418620462|ref|ZP_13183266.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus hominis VCU122]
gi|374822592|gb|EHR86612.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus hominis VCU122]
Length = 1438
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDKFERFSNPHEKLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTETTAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus caprae C87]
gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus caprae C87]
Length = 1442
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 422 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 481
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 482 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 531
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 532 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 584
Query: 302 LTFDLK 307
+ +K
Sbjct: 585 MIQQMK 590
>gi|377558773|ref|ZP_09788355.1| DNA polymerase III epsilon subunit [Gordonia otitidis NBRC 100426]
gi|377524166|dbj|GAB33520.1| DNA polymerase III epsilon subunit [Gordonia otitidis NBRC 100426]
Length = 590
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG S ++RI EI + GG+ F TLV+P +P V GIT M
Sbjct: 23 TLVVVDLETTGGSATDDRITEIGAVKIRGGQVLGEFATLVDPGAPIPPQIVALTGITEAM 82
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D PR+++++P + + + G IL VAHNAR FD+ FL R + W
Sbjct: 83 VY--DAPRIDEVLPSFIEFAR------GSIL-VAHNAR-FDMSFLRQNALRLHLQ----W 128
Query: 245 LFMDTL---TLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
F TL T+AR ++ G + V L AL + + + V HRA+ D +
Sbjct: 129 PFTATLCTVTMARRIL---GRDEAPTVRLSALADLFDV-TVRPTHRALDDARATVEVFHH 184
Query: 302 L 302
L
Sbjct: 185 L 185
>gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III subunit alpha [Oceanobacillus
iheyensis HTE831]
gi|32469727|sp|Q8EQU6.1|DPO3_OCEIH RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
iheyensis HTE831]
Length = 1428
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 20/179 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + IIE+A + GGE F++ NP + + GIT DM
Sbjct: 413 TFVVFDVETTGLSAVYDTIIELAAVKIKGGEIVDRFESFANPHHALSQTTIDLTGITDDM 472
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P + D++ ++ G + VAHNA SFD+ FL F R YE +N
Sbjct: 473 VN--DAPEVADVLKDFHTWM-------GNDILVAHNA-SFDMGFLNQGFQRIDYEKASNP 522
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+ +DTL LAR L+ ++ L L ++ I L HRA+ D +L +L
Sbjct: 523 V-VDTLELARFLLPELRNH-----RLNTLCKHLDIELT-QHHRAIYDAEATGYLLWKLV 574
>gi|225568406|ref|ZP_03777431.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM
15053]
gi|225162634|gb|EEG75253.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM
15053]
Length = 1487
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 88/184 (47%), Gaps = 23/184 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +VFD+ETTGFS ++IIEI + GG F T V+PK +P + GIT M
Sbjct: 447 TFVVFDLETTGFSSIKDKIIEIGAVKVEGGRITEKFSTFVDPKIPIPFRITQLTGITDQM 506
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY-EVPNN 243
V D P +E +P L + G VAHNA FDV F+ C Y ++ +
Sbjct: 507 VM--DAPEIEAALPAFLEF-------AGDAALVAHNA-GFDVGFIDQ---NCRYMDITPD 553
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+ +DT+ ++R L+ + SK L + + I L + HRA+ D + I R
Sbjct: 554 FTAVDTVAMSRILLPT-----LSKFKLNVVAKALNISL-ENHHRAVDDAGATAEIFVRFV 607
Query: 304 FDLK 307
LK
Sbjct: 608 DMLK 611
>gi|418605340|ref|ZP_13168665.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU041]
gi|374402437|gb|EHQ73462.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU041]
Length = 1125
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 105 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 164
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 165 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 214
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 215 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 267
Query: 302 LTFDLK 307
+ +K
Sbjct: 268 MVQQMK 273
>gi|302381472|ref|YP_003817295.1| DNA polymerase III subunit epsilon [Brevundimonas subvibrioides
ATCC 15264]
gi|302192100|gb|ADK99671.1| DNA polymerase III, epsilon subunit [Brevundimonas subvibrioides
ATCC 15264]
Length = 247
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 89/173 (51%), Gaps = 22/173 (12%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLG--GENSTFQTLVNPKRQVPN--AHVHGITTDM 184
IV D ETTGF R +R+IE+ ++L TF VNP+R +P VHGIT D
Sbjct: 5 IVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPERLIPADAIRVHGITDDK 64
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P+ ++ L+ ++ G +AHNA+ FD F+ +E RC + + +
Sbjct: 65 V--KDAPKFAQIVVDLMDFI-------GDAPVIAHNAQ-FDRNFIDHECGRCGHPLLHET 114
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLS 296
++DTL LA++ G +N SL AL + Y I LV + H A+ D L+
Sbjct: 115 RWIDTLQLAQKRF-PGMAN-----SLDALCKRYKISLVDRTLHGALIDARLLA 161
>gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
DSM 15981]
gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
DSM 15981]
Length = 1561
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 21/191 (10%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D +Q++ +++ + T +VFDIETTGFS E RIIEI + G+ F T VNP
Sbjct: 521 DTKQLVENSRNQSFADTYVVFDIETTGFSPEKNRIIEIGAVKVTDGKITDKFSTFVNPDV 580
Query: 171 QVPNAHVHGITT--DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + +T+ D + P P+++ ++P L +V G VAHNA SFDV F
Sbjct: 581 PIP-FDIEKLTSINDAMVLP-YPKIDVILPQFLEFV-------GDAALVAHNA-SFDVGF 630
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ + + + N +DT+T+AR L+ NL ++ L + + I L + HRA
Sbjct: 631 IGHYAEKQG--LAFNPTVLDTVTMARLLL----PNL-NRFKLDTVAKALNISLA-NHHRA 682
Query: 289 MADVNCLSLIL 299
+ D C + I
Sbjct: 683 VDDAGCTAEIF 693
>gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cytotoxicus NVH 391-98]
gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98]
Length = 1433
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 96/201 (47%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + ++ K Q G VAHNA SFD+ FL F +C + P N
Sbjct: 477 LT--DAPEVGEVF-------KKFQAWMGDHTLVAHNA-SFDMGFLNVGFKKCGLDKPKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPDMKNH-----RLNTLCKKLDIELT-QHHRAIYDTEATGYLLAKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L ++IE+GF D +N
Sbjct: 578 -----LKEVIEKGFEYHDQLN 593
>gi|392424216|ref|YP_006465210.1| DNA polymerase III, alpha chain [Desulfosporosinus acidiphilus SJ4]
gi|391354179|gb|AFM39878.1| DNA polymerase III, alpha chain [Desulfosporosinus acidiphilus SJ4]
Length = 1444
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T V D+ETTGFS E+I EI L GG+ F VNP++ +P V IT +M
Sbjct: 420 TYCVLDLETTGFSPVTEKITEIGIMKLQGGKVTDKFSCFVNPEKPIPARVVEVTNITDEM 479
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D ++ + P +L ++ + VAHNA FD+ FL Y+ ++
Sbjct: 480 V--KDAETIDQVFPKMLDFIDGS-------VLVAHNAE-FDIGFLKYNAKDLGYDF--DF 527
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
++DTL+LA+EL + L + + GI V AHRA+ DV+ + +
Sbjct: 528 TYLDTLSLAKELFPDFKT-----YKLGRIAKNLGIK-VEVAHRALDDVDTTVKVFNVMIE 581
Query: 305 DLK 307
LK
Sbjct: 582 KLK 584
>gi|418249549|ref|ZP_12875871.1| hypothetical protein MAB47J26_12707 [Mycobacterium abscessus 47J26]
gi|420951540|ref|ZP_15414785.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0626]
gi|420955710|ref|ZP_15418948.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0107]
gi|420961226|ref|ZP_15424453.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-1231]
gi|420991679|ref|ZP_15454829.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0307]
gi|420997517|ref|ZP_15460656.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0912-R]
gi|421001955|ref|ZP_15465082.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0912-S]
gi|353451204|gb|EHB99598.1| hypothetical protein MAB47J26_12707 [Mycobacterium abscessus 47J26]
gi|392159622|gb|EIU85316.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0626]
gi|392187709|gb|EIV13349.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0307]
gi|392188402|gb|EIV14039.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0912-R]
gi|392198473|gb|EIV24086.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0912-S]
gi|392251865|gb|EIV77335.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-1231]
gi|392254422|gb|EIV79887.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0107]
Length = 600
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG EN+ I EI + GGE TLV+P+R +P V GIT+ M
Sbjct: 27 TFVVVDLETTGGGAENDAITEIGAVKVRGGEVLGELATLVDPQRSLPPQIVRLTGITSAM 86
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + ++P L + + + VAHNA FD+ FL +C + P
Sbjct: 87 LV--DAPPIAQVLPAFLEFARG-------AVLVAHNA-GFDIGFLKAAARQCGIDWPQPA 136
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ LAR ++ + +VSL AL + G + HRA+ D +L L
Sbjct: 137 VLC-TVRLARRVLS---RDEAPRVSLGALAQLLGASTTPN-HRALDDARATVDVLHAL 189
>gi|452995284|emb|CCQ93051.1| DNA polymerase III PolC-type [Clostridium ultunense Esp]
Length = 1425
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 27/180 (15%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +VFDIETTG S +N+ I EI + G F L+NP+R +PN ++ GIT +M
Sbjct: 411 TFVVFDIETTGLSPKNDMITEIGAVKIEKGMIVDEFSQLINPERPIPNRIVNITGITDEM 470
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P +++++P ++ + VAHNA SFDV F+ + ++ V NN
Sbjct: 471 V--RDKPTIKEVLPQFERFIDGA-------VLVAHNA-SFDVSFIREQLAKARKTV-NNP 519
Query: 245 LFMDTLTLAREL---MKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+F DTL L+R L +KS NL +K + + L+ + HRA+ D S I +
Sbjct: 520 IF-DTLELSRALFPELKSHKLNLVAK--------HLNVNLL-NHHRAVDDAKATSEIFLK 569
>gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL
Brener]
gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
cruzi]
Length = 1473
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 23/188 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+VFDIE+TG + + IIEIA D + E ++F +LV+P+R +P +H IT MV
Sbjct: 832 VVFDIESTGLNTATDAIIEIAAWDPV--EATSFSSLVDPERAIPQETMAIHHITDGMV-- 887
Query: 188 PDVPRMEDLIPILLHYVK---SRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
PR+ ++ L Y++ ++ P ++ + HN + D P L F R + +N
Sbjct: 888 RGAPRLPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFEREGVCM-DNI 946
Query: 245 LFMDTLTLARELMKS-GGS------------NLPSKVSLQALREYYGIPLVGSAHRAMAD 291
LF D+L L + L + GS L + + L +L E + G HRA D
Sbjct: 947 LFCDSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEGLHVEADGLLHRADTD 1006
Query: 292 VNCLSLIL 299
L +L
Sbjct: 1007 AKTLWFVL 1014
>gi|451823301|ref|YP_007459575.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776101|gb|AGF47142.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 236
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 24/182 (13%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLGGE--NSTFQTLVNPKRQV-PNA-HVHGITTDM 184
+VFD+ETTG + RIIEI +L VNP R++ P A +HG+T D
Sbjct: 4 VVFDLETTGLDVSKGHRIIEIGCVELSNRSITGVDLHLYVNPDREIDPGALAIHGLTNDF 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P+ D++ L ++K + +AHNA SFDV FL E + + + +
Sbjct: 64 L--SDKPKFRDIVDKFLAFIKGAE-------IIAHNA-SFDVKFLNYELGKLNLGNLDQY 113
Query: 245 L--FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIP-LVGSAHRAMADVNCLSLILQR 301
+D+L+LAREL + G N SL AL +YYG+ L H A+ D LS +
Sbjct: 114 CDKIIDSLSLAREL-RPGKRN-----SLDALCDYYGVSNLERKFHGALLDSKLLSHVWLA 167
Query: 302 LT 303
+T
Sbjct: 168 MT 169
>gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122]
gi|123549060|sp|Q2YXK4.1|DPO3_STAAB RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122]
Length = 1438
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + +IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYNKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|403667362|ref|ZP_10932674.1| DNA polymerase III subunit epsilon [Kurthia sp. JC8E]
Length = 235
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 20/165 (12%)
Query: 130 IVFDIETTGFSRENERIIEI-AFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVFD+ETTGF ++II+I A + + F TL+NP R +P + I + V
Sbjct: 67 IVFDLETTGFQARRDQIIQIGAIRYVNFVPTVQFNTLINPMRPIPERITQLTSIQNEDVW 126
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D+P ++ ++P L +V G +AHNA SFD+ FLI + +C P +
Sbjct: 127 --DMPTIDSVLPEFLTFV-------GDATLLAHNA-SFDMKFLIEKMDQCQL-APQQFHV 175
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
+DT+ LA++ +K N+P+ L ++++ + V S H A+AD
Sbjct: 176 IDTMALAKKYIK----NVPN-YKLPTFKQFFNMQHVAS-HEALAD 214
>gi|433655010|ref|YP_007298718.1| DNA polymerase III, alpha chain [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293199|gb|AGB19021.1| DNA polymerase III, alpha chain [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 1410
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 99/205 (48%), Gaps = 28/205 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTG S N+ IIEI + TF+T VNP+ + N + GIT DMV
Sbjct: 400 VVFDIETTGLSSINDSIIEIGAVKIKDCRIVDTFETFVNPQIHISNFITKLTGITDDMVK 459
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ P +++++P L ++K VAHNA +FDV F+ + EV N L
Sbjct: 460 R--YPPIDEVLPKFLEFIKGST-------LVAHNA-NFDVTFIKTKAKNLGIEVDNPVL- 508
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
DTL L+R + + NL + L + ++ G+ L + HRA+ D + I +
Sbjct: 509 -DTLELSRHMYE----NLKN-YKLDTVAQHLGVSL-ENHHRAVDDARATAEIFLK----- 556
Query: 307 KLSLCDLIERGFTPSDLINPKKKKK 331
S+ L E G + IN K K
Sbjct: 557 --SINKLKENGIEKVNEINSYLKNK 579
>gi|403716809|ref|ZP_10942247.1| DNA polymerase III subunit epsilon [Kineosphaera limosa NBRC
100340]
gi|403209605|dbj|GAB96930.1| DNA polymerase III subunit epsilon [Kineosphaera limosa NBRC
100340]
Length = 598
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 88/182 (48%), Gaps = 20/182 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG S I EI + GGE FQTLVNP +P + + GIT
Sbjct: 52 VTFVVVDLETTGGSSIECAITEIGAVKVRGGEVLGQFQTLVNPGEPIPAVISVLTGITDS 111
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV PR+ ++P L +V G + VAHNA FDV FL R + P
Sbjct: 112 MVAG--APRIATVLPSFLEFV-------GNSVLVAHNA-PFDVGFLRAAADRLGIDWP-G 160
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYG---IPLVGSAHRAMADVNCLSLILQ 300
+ +DT+ LAR+L+ G + L +L +G P + H A A V+ L ++
Sbjct: 161 YQVLDTVKLARQLV---GRDEAPNHKLASLARLFGATQTPDHRALHDARATVDVLHALIG 217
Query: 301 RL 302
R+
Sbjct: 218 RV 219
>gi|416844697|ref|ZP_11905383.1| DNA polymerase III PolC [Staphylococcus aureus O46]
gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46]
Length = 1436
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 20/182 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LT 303
+
Sbjct: 579 MV 580
>gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain
CL Brener]
gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
cruzi]
Length = 1417
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 23/188 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+VFDIE+TG + + IIEIA D + E ++F +LV+P+R +P +H IT MV
Sbjct: 776 VVFDIESTGLNTATDAIIEIAAWDPV--EATSFSSLVDPERSIPQETMAIHHITDGMV-- 831
Query: 188 PDVPRMEDLIPILLHYVK---SRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
PR+ ++ L Y++ ++ P ++ + HN + D P L F R + +N
Sbjct: 832 RGAPRLPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFEREGVCM-DNI 890
Query: 245 LFMDTLTLARELMKS-GGS------------NLPSKVSLQALREYYGIPLVGSAHRAMAD 291
LF D+L L + L + GS L + + L +L E + G HRA D
Sbjct: 891 LFCDSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEGLHVEADGLLHRADTD 950
Query: 292 VNCLSLIL 299
L +L
Sbjct: 951 AKTLWFVL 958
>gi|425734098|ref|ZP_18852418.1| hypothetical protein C272_03140 [Brevibacterium casei S18]
gi|425482538|gb|EKU49695.1| hypothetical protein C272_03140 [Brevibacterium casei S18]
Length = 584
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 87/180 (48%), Gaps = 19/180 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH---GITT 182
VT +V D+ETTG I EI L GGE FQ+LV P+ V + V GIT
Sbjct: 32 VTFVVVDLETTGTHSGTSEITEIGAVKLRGGEVIGEFQSLVKPEHSVISPFVSRLTGITH 91
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
MV D P + ++P L + G +L VAHNA FD+ FL + R Y P
Sbjct: 92 AMV--DDAPSIRSVLPSFLEFAV------GAVL-VAHNA-PFDIGFLRSACERLDYHWPQ 141
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ +DT+TL+R ++ G + L L ++G +V HRA++D +L RL
Sbjct: 142 PQV-LDTVTLSRRVL---GRDEVRNHKLGTLAAHFGT-VVEPDHRALSDARATGEVLHRL 196
>gi|336119813|ref|YP_004574590.1| DNA polymerase III subunit epsilon [Microlunatus phosphovorus NM-1]
gi|334687602|dbj|BAK37187.1| DNA polymerase III subunit epsilon [Microlunatus phosphovorus NM-1]
Length = 588
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 69/134 (51%), Gaps = 15/134 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTD 183
VT V D+ETTG + E++ I EI + GGE FQTLVNPK +P A + GIT
Sbjct: 24 VTFCVVDLETTGGA-ESDAITEIGAVKVRGGEVQGRFQTLVNPKGSIPPLIAVLTGITNS 82
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV D P + ++P L + ++ + VAHNA FD FL Y P
Sbjct: 83 MVA--DAPPLRQVLPAFLAFAEN-------TVLVAHNA-PFDTGFLRRACESLGYPYP-K 131
Query: 244 WLFMDTLTLARELM 257
W +DT +LAR ++
Sbjct: 132 WPVLDTASLARAIL 145
>gi|407855973|gb|EKG06705.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
cruzi]
Length = 1417
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 23/188 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+VFDIE+TG + + IIEIA D + E ++F +LV+P+R +P +H IT MV
Sbjct: 776 VVFDIESTGLNTATDAIIEIAAWDPV--EATSFSSLVDPERAIPQETMAIHHITDGMV-- 831
Query: 188 PDVPRMEDLIPILLHYVK---SRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
PR+ ++ L Y++ ++ P ++ + HN + D P L F R + +N
Sbjct: 832 RGAPRLPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFEREGVCM-DNI 890
Query: 245 LFMDTLTLARELMKS-GGS------------NLPSKVSLQALREYYGIPLVGSAHRAMAD 291
LF D+L L + L + GS L + + L +L E + G HRA D
Sbjct: 891 LFCDSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEGLHVEADGLLHRADTD 950
Query: 292 VNCLSLIL 299
L +L
Sbjct: 951 AKTLWFVL 958
>gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus capitis SK14]
gi|417907128|ref|ZP_12550904.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus capitis VCU116]
gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus capitis SK14]
gi|341596759|gb|EGS39350.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus capitis VCU116]
Length = 1438
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 L 302
+
Sbjct: 581 M 581
>gi|383640132|ref|ZP_09952538.1| DNA polymerase III, epsilon subunit [Sphingomonas elodea ATCC
31461]
Length = 236
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 92/187 (49%), Gaps = 22/187 (11%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLG--GENSTFQTLVNPKRQVP--NAHVHGITTDM 184
IVFD ETTG S +R++EI +L+ + F +NP+R +P +VHG++
Sbjct: 4 IVFDTETTGLSFSGGDRLVEIGCVELVNRVATGNHFHAYINPQRGMPVEAFNVHGLSERF 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ED++ LL ++ G VAHNA FD FL E RCS +
Sbjct: 64 LS--DKPLFEDVVEDLLAFI-------GDSPMVAHNA-GFDFGFLNGELGRCSRPPVDLS 113
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQRLT 303
+DTL LAR K G +K +L AL YGI L + H A+ D L+ + LT
Sbjct: 114 RMVDTLVLAR--TKHPG----AKHTLDALCSRYGIDLSARTLHGALLDAQLLAQVYVELT 167
Query: 304 FDLKLSL 310
+++L
Sbjct: 168 GGRQITL 174
>gi|453075114|ref|ZP_21977902.1| hypothetical protein G419_07524 [Rhodococcus triatomae BKS 15-14]
gi|452763404|gb|EME21685.1| hypothetical protein G419_07524 [Rhodococcus triatomae BKS 15-14]
Length = 574
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 94/182 (51%), Gaps = 22/182 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG S ++ I EI + GGE TLV+P R +P + GIT+ M
Sbjct: 19 TFVVVDLETTGSSSGDDAITEIGAVKIRGGEVVGELSTLVDPGRTMPPHIVRLTGITSAM 78
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D PR+E ++P L + + G +L VAHNA FD+ FL +RC P ++
Sbjct: 79 LV--DAPRIEQVLPSFLEFAR------GAVL-VAHNA-PFDIGFLRAATTRCDLAWP-SF 127
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQ 300
+ T+ LAR ++ PS V L AL + + + HRA+ D V+ L +++
Sbjct: 128 QVLCTVRLARRVLSR--EEAPS-VKLSALADLFRVS-TRPTHRALDDARATVDVLHALIE 183
Query: 301 RL 302
R+
Sbjct: 184 RV 185
>gi|407689571|ref|YP_006804744.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292951|gb|AFT97263.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 711
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 31/217 (14%)
Query: 97 VNKTEISKIQRIQHYDIEQIIAENK---DLAKLVTAIVFDIETTGFSRENERIIEIAFQD 153
+ + ++ IQR+Q + + K D A+ +V DIETTG + RI EI
Sbjct: 510 LRRNQLVSIQRLQQAGFDVAVTTVKWIRDPAQ--PYVVVDIETTGGNSSYNRITEIGMVK 567
Query: 154 LLGG-ENSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKP 210
L+GG E FQTL+NP+R++P+ + GI+ DMV D P ++ + ++ +
Sbjct: 568 LVGGKEVDRFQTLLNPQRRIPSNITRLTGISDDMVA--DAPLFAEVAEHVANFTED---- 621
Query: 211 GGYILFVAHNARSFDVPFLINEFSRC--SYEVPNNWLFMDTLTLARELMKSGGSNLPSKV 268
+FVAHN +FD F+ EF+R S+ P + RE M+ LPS
Sbjct: 622 ---AVFVAHNV-NFDYGFIKQEFARLEQSFRRPK-------MCTVRE-MRRTYPGLPS-Y 668
Query: 269 SLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
SL L +++ I + HRA++D + +L +L F+
Sbjct: 669 SLANLTKHFHIEM-EQHHRALSDAKAAAELL-KLAFE 703
>gi|406598669|ref|YP_006749799.1| DNA polymerase III subunit epsilon [Alteromonas macleodii ATCC
27126]
gi|406375990|gb|AFS39245.1| DNA polymerase III subunit epsilon [Alteromonas macleodii ATCC
27126]
Length = 711
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 31/217 (14%)
Query: 97 VNKTEISKIQRIQHYDIEQIIAENK---DLAKLVTAIVFDIETTGFSRENERIIEIAFQD 153
+ + ++ IQR+Q + + K D A+ +V DIETTG + RI EI
Sbjct: 510 LRRNQLVSIQRLQQAGFDVAVTTVKWIRDPAQ--PYVVVDIETTGGNSSYNRITEIGMVK 567
Query: 154 LLGG-ENSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKP 210
L+GG E FQTL+NP+R++P+ + GI+ DMV D P ++ + ++ +
Sbjct: 568 LVGGKEVDRFQTLLNPQRRIPSNITRLTGISDDMVA--DAPLFAEVAEHVANFTED---- 621
Query: 211 GGYILFVAHNARSFDVPFLINEFSRC--SYEVPNNWLFMDTLTLARELMKSGGSNLPSKV 268
+FVAHN +FD F+ EF+R S+ P + RE M+ LPS
Sbjct: 622 ---AVFVAHNV-NFDYGFIKQEFARLEQSFRRPK-------MCTVRE-MRRTYPGLPS-Y 668
Query: 269 SLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
SL L +++ I + HRA++D + +L +L F+
Sbjct: 669 SLANLTKHFHIEM-EQHHRALSDAKAAAELL-KLAFE 703
>gi|407419836|gb|EKF38362.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
cruzi marinkellei]
Length = 1417
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 23/188 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
++FDIE+TG + + IIEIA D + E ++F +LV+P+R +P +H IT MV
Sbjct: 776 VLFDIESTGLNTATDAIIEIAAWDPV--EATSFSSLVDPERSIPQETMAIHHITDGMV-- 831
Query: 188 PDVPRMEDLIPILLHYVK---SRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
PR+ ++ L Y++ ++ P ++ + HN + D P L F R + +N
Sbjct: 832 RGAPRLPEVTRALARYLRLDEAQSDPNEVVVLIGHNVFALDEPLLRRAFEREGVCM-DNI 890
Query: 245 LFMDTLTLARELMKS-GGS------------NLPSKVSLQALREYYGIPLVGSAHRAMAD 291
LF D+L L + L + GS L + + L +L E + G HRA D
Sbjct: 891 LFCDSLVLLKALKRELQGSTENTRVDRGVLETLTTSLRLSSLVEGLHVEADGLLHRADKD 950
Query: 292 VNCLSLIL 299
L +L
Sbjct: 951 AKTLWFVL 958
>gi|229098054|ref|ZP_04229002.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
gi|228685245|gb|EEL39175.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
Length = 318
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 21/177 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGITNYRV- 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + + P N +
Sbjct: 73 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGFPEPKNKV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+ T
Sbjct: 123 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQKCT 172
>gi|407685640|ref|YP_006800814.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'English Channel 673']
gi|407247251|gb|AFT76437.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'English Channel 673']
Length = 711
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 31/218 (14%)
Query: 96 NVNKTEISKIQRIQHYDIEQIIAENK---DLAKLVTAIVFDIETTGFSRENERIIEIAFQ 152
+ + ++ IQR+Q + + K D A+ +V DIETTG + RI EI
Sbjct: 509 QLRRNQLVSIQRLQQAGFDVAVTTVKWIRDPAQ--PYVVVDIETTGGNSSYNRITEIGMV 566
Query: 153 DLLGG-ENSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQK 209
L+GG E FQTL+NP+R++P+ + GI+ DMV D P ++ + ++ +
Sbjct: 567 KLVGGKEVDRFQTLLNPQRRIPSNITRLTGISDDMVA--DAPLFAEVAEHVANFTED--- 621
Query: 210 PGGYILFVAHNARSFDVPFLINEFSRC--SYEVPNNWLFMDTLTLARELMKSGGSNLPSK 267
+FVAHN +FD F+ EF+R S+ P + RE M+ LPS
Sbjct: 622 ----AVFVAHNV-NFDYGFIKQEFARLEQSFRRPK-------MCTVRE-MRRTYPGLPS- 667
Query: 268 VSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
SL L +++ I + HRA++D + +L +L F+
Sbjct: 668 YSLANLTKHFHIEM-EQHHRALSDAKAAAELL-KLAFE 703
>gi|403724569|ref|ZP_10946100.1| DNA polymerase III epsilon subunit [Gordonia rhizosphera NBRC
16068]
gi|403205568|dbj|GAB90431.1| DNA polymerase III epsilon subunit [Gordonia rhizosphera NBRC
16068]
Length = 573
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 95/198 (47%), Gaps = 25/198 (12%)
Query: 112 DIEQIIAENKDLAKL-VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPK 169
DIE E D A T +V D+ETTG S ++RI EI + GGE F TLV+P
Sbjct: 5 DIESDGDEFTDGALFETTLVVVDLETTGGSPTDDRITEIGAVKIRGGEVIGEFATLVDPG 64
Query: 170 RQVPNAHV--HGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVP 227
+ +P V GIT MV D P + ++P + + + G IL VAHNAR FD+
Sbjct: 65 QPIPPQIVTLTGITEAMVT--DAPAIAQVLPSFVEFAR------GAIL-VAHNAR-FDMG 114
Query: 228 FLINEFSRCSYEVPNNWLF---MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGS 284
FL R +W F + T+T+AR ++ PS V L AL + + + V
Sbjct: 115 FLRQNAVRLDI----DWPFTASLCTVTMARRILTR--DEAPS-VRLSALADLFAVS-VRP 166
Query: 285 AHRAMADVNCLSLILQRL 302
HRA+ D + RL
Sbjct: 167 THRALDDARATVEVFHRL 184
>gi|407705995|ref|YP_006829580.1| glycosyl transferase group 1 [Bacillus thuringiensis MC28]
gi|407383680|gb|AFU14181.1| DNA polymerase III alpha subunit [Bacillus thuringiensis MC28]
Length = 318
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 21/177 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGITNYRV- 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + + P N +
Sbjct: 73 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGFPEPKNKV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+ T
Sbjct: 123 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQKCT 172
>gi|402556268|ref|YP_006597539.1| DNA polymerase III subunit epsilon [Bacillus cereus FRI-35]
gi|401797478|gb|AFQ11337.1| DNA polymerase III subunit epsilon [Bacillus cereus FRI-35]
Length = 315
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 21/178 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+ F
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQKCAF 170
>gi|317132568|ref|YP_004091882.1| DNA polymerase III subunit alpha [Ethanoligenens harbinense YUAN-3]
gi|315470547|gb|ADU27151.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense
YUAN-3]
Length = 1457
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 95/223 (42%), Gaps = 39/223 (17%)
Query: 61 RWSRRRITTGTEGSKKTIQSHKLKNIKFEATST--TINVNKTEISKIQRIQHYDIEQIIA 118
RW + I I H + EA +T I + EI I I+ Y ++ +
Sbjct: 379 RWGHKAIA---------ITDHGVAQAFPEAMNTVEAIRKDGGEIKVIYGIEAYFVDDTVP 429
Query: 119 ENKDLAKLVTA---IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN 174
A + + + FD+ETTG +REN+RI EI + GE F VNP + +P
Sbjct: 430 ATVGGANMPFSGEFVAFDLETTGLNRENDRITEIGAVRIRNGEIGERFDLFVNPHKPIPP 489
Query: 175 --AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINE 232
+ GIT DMV D ++ + + G + VAHNA FD F
Sbjct: 490 RITELTGITDDMV--KDAAEEDEALRQFFAFC-------GDAVLVAHNA-EFDTGFCRAA 539
Query: 233 FSRCSYEVPNNWLFMDTLTLARELMK----------SGGSNLP 265
+RC E P + +MD++ L R ++ +GG +LP
Sbjct: 540 AARCGMEFP--YTYMDSIPLCRTVLPGLKNYKLDTVAGGLHLP 580
>gi|229117071|ref|ZP_04246451.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
gi|423378632|ref|ZP_17355916.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1O-2]
gi|423441686|ref|ZP_17418592.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4X2-1]
gi|423448089|ref|ZP_17424968.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5O-1]
gi|423464759|ref|ZP_17441527.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6O-1]
gi|423534101|ref|ZP_17510519.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB2-9]
gi|423540632|ref|ZP_17517023.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB4-10]
gi|423546865|ref|ZP_17523223.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB5-5]
gi|423623345|ref|ZP_17599123.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD148]
gi|228666360|gb|EEL21822.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
gi|401130500|gb|EJQ38169.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5O-1]
gi|401174167|gb|EJQ81379.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB4-10]
gi|401180369|gb|EJQ87531.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB5-5]
gi|401258514|gb|EJR64699.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD148]
gi|401634279|gb|EJS52046.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1O-2]
gi|402416518|gb|EJV48834.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4X2-1]
gi|402419196|gb|EJV51476.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6O-1]
gi|402463071|gb|EJV94773.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB2-9]
Length = 315
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 21/177 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + + P N +
Sbjct: 71 --DAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGFPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+ T
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQKCT 169
>gi|229075504|ref|ZP_04208492.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
gi|228707600|gb|EEL59785.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
Length = 318
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 21/177 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGITNYRVS 73
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + + P N +
Sbjct: 74 --DAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGFPEPKNKV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+ T
Sbjct: 123 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQKCT 172
>gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type
[Paenibacillus sp. HGF5]
gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type
[Paenibacillus sp. HGF5]
Length = 1438
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 102/208 (49%), Gaps = 25/208 (12%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLL-GGENSTFQTLVNPKRQVPNAHVHGITT--- 182
T +VFDIETTG S +IIE+A + G E + T VNP ++P H+ +T
Sbjct: 419 ATYVVFDIETTGLSITANKIIELAAVKMHEGKEIGRYATFVNPHERIP-YHIQQLTNIND 477
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
DMV D P +E ++ + +V G + VAHNAR FD+ F+ +
Sbjct: 478 DMV--KDAPELEPVLKEFVEFV-------GDGVLVAHNAR-FDMGFIQAALKNAGMDTLE 527
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
N ++DTL LAR L+ G N L L + Y + L+ S HRA+ D L+ IL L
Sbjct: 528 N-PYLDTLELAR-LVHPGLKNH----RLNTLADKYKV-LLESHHRAIDDTIALAGILNGL 580
Query: 303 TFDL-KLSLCDLIER--GFTPSDLINPK 327
D+ K +++R + +DL N +
Sbjct: 581 LSDVDKTKGVKMLDRLNDYVGTDLSNTR 608
>gi|229104149|ref|ZP_04234821.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
gi|228679166|gb|EEL33371.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
Length = 315
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 21/177 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGFPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+ T
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQKCT 169
>gi|402573894|ref|YP_006623237.1| DNA polymerase III subunit alpha [Desulfosporosinus meridiei DSM
13257]
gi|402255091|gb|AFQ45366.1| DNA polymerase III, alpha chain [Desulfosporosinus meridiei DSM
13257]
Length = 1443
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 91/199 (45%), Gaps = 37/199 (18%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T V D+ETTGFS E+I EI L G+ F VNP++ +P V IT DM
Sbjct: 419 TYCVLDLETTGFSAVTEKITEIGIMKLQDGKVIDEFSCFVNPEKPIPARVVEVTNITDDM 478
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D ++ + P LL +++ + VAHNA FD+ FL + Y ++
Sbjct: 479 V--KDAETIDQVFPKLLEFIEGS-------VLVAHNAE-FDIGFLKHNARVLGYSF--DY 526
Query: 245 LFMDTLTLARELM------KSG--GSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
++DTL+LA+EL K G NL KV + AHRA+ DV+
Sbjct: 527 TYLDTLSLAKELFPDFKTYKLGRIAKNLGFKVEV--------------AHRALDDVDTTV 572
Query: 297 LILQRLTFDLKLSLCDLIE 315
+ + + LK + +E
Sbjct: 573 KVFKVMLEKLKQRGAETLE 591
>gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10]
gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10]
Length = 1438
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 91/184 (49%), Gaps = 22/184 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLL-GGENSTFQTLVNPKRQVPNAHVHGITT--- 182
T +VFDIETTG S +IIE+A + G E + T VNP ++P H+ +T
Sbjct: 419 ATYVVFDIETTGLSITANKIIELAAVKMHEGKEIGRYATFVNPHERIP-YHIQQLTNIND 477
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
DMV D P +E ++ + +V G + VAHNAR FD+ F+ +
Sbjct: 478 DMV--KDAPELEPVLKEFVEFV-------GDGVLVAHNAR-FDMGFIQAALKNAGMDTLE 527
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
N ++DTL LAR L+ G N L L + Y + L+ S HRA+ D L+ IL L
Sbjct: 528 N-PYLDTLELAR-LVHPGLKNH----RLNTLADKYKV-LLESHHRAIDDTIALAGILNGL 580
Query: 303 TFDL 306
D+
Sbjct: 581 LSDV 584
>gi|254252965|ref|ZP_04946283.1| DNA polymerase III [Burkholderia dolosa AUO158]
gi|124895574|gb|EAY69454.1| DNA polymerase III [Burkholderia dolosa AUO158]
Length = 375
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG S RI EI ++ ST+ TLVNP + +P + GI+ MV
Sbjct: 16 VFVDLETTGGSSAEHRITEIGVVEVGPLGVSTWTTLVNPGQSIPPFIQQLTGISDAMVR- 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P L P L + + LFVAHNA SFD FL EF R Y + +
Sbjct: 75 -DAPSFASLAPALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAGYAFNPD--VL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLILQRL 302
T+ L+R L ++ L AL E +G LV SA HRA+AD + L ++L
Sbjct: 124 CTVRLSRALFPR-----EARHGLDALIERHG--LVPSARHRALADADLLWQFWRQL 172
>gi|253682510|ref|ZP_04863307.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum D str. 1873]
gi|253562222|gb|EES91674.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum D str. 1873]
Length = 1443
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 24/197 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +VFD+ETTGFS E ++IIEI + G +F T VNP+ ++P + IT D
Sbjct: 429 TFVVFDLETTGFSSEYDKIIEIGAVKIKNGNIIDSFSTFVNPEIKIPYNITELTSITNDD 488
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D +++++P + + K + VAHNA +FD+ F+ + S ++ N+
Sbjct: 489 VKNADT--IDNVLPKFMEFCKDS-------VLVAHNA-NFDMSFIRKNCNDLSIDI--NY 536
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ---R 301
MDT+ LA+ L + L + ++ G+ L + HRA+ D + IL +
Sbjct: 537 TVMDTVPLAKFLFPE-----LKRYKLNTIAKHLGVSL-ENHHRAVDDAKATADILLCCFK 590
Query: 302 LTFDLKLSLCDLIERGF 318
L D+K++ D + + F
Sbjct: 591 LLDDMKITSLDSLNKEF 607
>gi|269219439|ref|ZP_06163293.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
taxon 848 str. F0332]
gi|269211135|gb|EEZ77475.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
taxon 848 str. F0332]
Length = 589
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 88/183 (48%), Gaps = 19/183 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG E I EI + GGE F TLVNP + +P + GITT
Sbjct: 42 VTFVVVDLETTGAKPGPESITEIGAVKVRGGETVGEFSTLVNPGQPIPAFITSLTGITTA 101
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M + PR+ +IP L+ ++ + G + AHNAR FDV L F+ + P+
Sbjct: 102 MTAR--APRIAAVIPSLIEFLCA----GPSTVVAAHNAR-FDVGHLKAAFAGADFTWPSV 154
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+ +DT+ LAR S +P+ L L G HRA+ D V+ L +L
Sbjct: 155 RV-LDTVALARRAFSS--DEVPN-FKLSTLAGACGA-TTAPNHRALDDARATVDVLHAML 209
Query: 300 QRL 302
RL
Sbjct: 210 GRL 212
>gi|218133709|ref|ZP_03462513.1| hypothetical protein BACPEC_01578 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991084|gb|EEC57090.1| DNA polymerase III, alpha subunit, Gram-positive type
[[Bacteroides] pectinophilus ATCC 43243]
Length = 1403
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 138/317 (43%), Gaps = 36/317 (11%)
Query: 26 RESFHSFSRRYGHSPS--FKLLCSKTYGLEDQDSYTE-------RWSRRRITTGTEGSKK 76
R+S + RR H+ + +L C D SY + W ++ I G+ +
Sbjct: 259 RKSSDTRVRRMDHALTKRVELHCHTKMSDMDGVSYAKDLIKQALSWGQKAIAITDHGTVQ 318
Query: 77 TIQS--HKLKNIKFEATSTTINVNKTEISKIQRIQHYDIEQIIAENKDLAKLVTAIVFDI 134
H +++++ A + + I ++ D ++ + +K+ + +VFDI
Sbjct: 319 AFTDAFHVVRDLEGAAKKKGEDFDFKIIYGVEGYLVDDTKKPVIRSKNQSLDEKYVVFDI 378
Query: 135 ETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVP 191
ETTGFS EN+RIIEI + GE F T VNP+ +P + I MV P
Sbjct: 379 ETTGFSAENDRIIEIGAVKIEDGEIIDRFSTFVNPEVPIPFKIEKLTSINDSMVMG--AP 436
Query: 192 RMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLT 251
++E ++P L + + + VAHNA FD F+ N+ ++ N +DTL
Sbjct: 437 KIEQVLPEFLEFCEG-------CVVVAHNAE-FDTGFIRNKAAKQGMTFDNT--VVDTLA 486
Query: 252 LARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLK---- 307
+AR L+ L L +++ + L S HRA+ D + I ++ LK
Sbjct: 487 IARFLVPR-----LHNFKLDTLTKHFNVVLT-SHHRAVDDAEATAGIFLKMCELLKMRDI 540
Query: 308 LSLCDLIERGFTPSDLI 324
L+L L E G D I
Sbjct: 541 LTLDQLNEAGTPDVDAI 557
>gi|229829203|ref|ZP_04455272.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
14600]
gi|229792366|gb|EEP28480.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
14600]
Length = 1532
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 81/176 (46%), Gaps = 21/176 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS E +RIIEI + GG F + VNP R +P + I DMV
Sbjct: 501 VVFDIETTGFSAEKDRIIEIGAVRMEGGRITDRFSSFVNPGRPIPFRITELTSIRDDMVI 560
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+E+++P L + + + VAHNA FD+ F+ R E P +
Sbjct: 561 GS--AGIEEVLPDFLAFSQG-------AIMVAHNA-DFDMGFIRQNCLRLHLEAPAT--Y 608
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
MDT+ + R LM S L L + I G HRA+ D + I ++
Sbjct: 609 MDTVAMGRYLMPS-----LHNQKLNTLAKALKID-PGHHHRAVDDAEATAHIFEKF 658
>gi|256375516|ref|YP_003099176.1| hypothetical protein Amir_1378 [Actinosynnema mirum DSM 43827]
gi|255919819|gb|ACU35330.1| DNA polymerase III, epsilon subunit [Actinosynnema mirum DSM 43827]
Length = 578
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG + I EI + GG F TLV+P+R +P V GIT +M
Sbjct: 30 TFVVFDLETTGPRAAEDGITEIGAVKVRGGRVIGEFGTLVDPERGIPPQIVALTGITQNM 89
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V P + ++P L + + + VAHN+ FDV F+ R Y P
Sbjct: 90 VT--GAPVLASVLPAFLEFAEG-------AVLVAHNS-GFDVGFMKAACERHGYAWPKP- 138
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQ 300
+ T+ LAR ++ PS L AL +G+P + HRA+ D V L +L+
Sbjct: 139 PVVCTVKLARRVLSR--EEAPS-CKLSALSALFGVPEAPN-HRALVDARATVEVLHRLLE 194
Query: 301 RLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
R+ SL +L+ + P ++P++++K L ++
Sbjct: 195 RVGSVGVHSLEELL--AYLPD--VSPQQRRKRSLAAD 227
>gi|317125104|ref|YP_004099216.1| DNA polymerase III subunit epsilon [Intrasporangium calvum DSM
43043]
gi|315589192|gb|ADU48489.1| DNA polymerase III, epsilon subunit [Intrasporangium calvum DSM
43043]
Length = 590
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+E+TG S I EI + GG+ FQTLVNP +P + + GIT
Sbjct: 18 VTFVVVDLESTGGSPAQCGITEIGAVKVRGGDVIGEFQTLVNPAEPIPAFISVLTGITDA 77
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV D PR+E P L + G +L VAHNA FD+ FL R P
Sbjct: 78 MVA--DSPRIESAFPAFLEFAA------GSVL-VAHNA-GFDISFLKAAAVRTGTPWP-G 126
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ +DTLTLAR+L+ +P+ L +L + P HRA+ D +L L
Sbjct: 127 FDVLDTLTLARQLVTR--DEVPNH-KLSSLARVFASPTTPD-HRALHDARATVDVLHGL 181
>gi|444432647|ref|ZP_21227799.1| DNA polymerase III subunit epsilon [Gordonia soli NBRC 108243]
gi|443886568|dbj|GAC69520.1| DNA polymerase III subunit epsilon [Gordonia soli NBRC 108243]
Length = 576
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHV--HGITTDM 184
T +V D+ETTG S + ++I EI + GGE F TLV+P ++P V GIT M
Sbjct: 24 TLVVVDLETTGGSAKADQITEIGAVKIRGGEVIGEFATLVDPGCRIPPQIVTLTGITQAM 83
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D PR+ +++P + + + G IL VAHNAR FD+ FL +R + P
Sbjct: 84 VT--DAPRIAEVLPSFVEFAR------GAIL-VAHNAR-FDMGFLRQNAARLGIDWPFT- 132
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ +AR ++ PS V L AL + + + V HRA+ D + RL
Sbjct: 133 ASLCTVAMARRILDR--DEAPS-VRLSALADLFDVS-VRPTHRALDDARATVEVFHRL 186
>gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
Length = 1433
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + ++ + K G + L VAHNA SFD+ FL F +C + P N
Sbjct: 477 LT--DAPEVGEV------FKKFESWMGDHTL-VAHNA-SFDMGFLNVGFKKCGLDKPKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|228992309|ref|ZP_04152240.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM
12442]
gi|228767334|gb|EEM15966.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM
12442]
Length = 315
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N+RII++A E F + VNP+R +PN + GIT V
Sbjct: 11 VVIDFETTGFNPYNDRIIQVAAVRYRNHELADQFVSFVNPERFIPNRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +++++P+ L ++ G VAHNA SFD+ FL + P N +
Sbjct: 71 --DAPTIQEVLPLFLAFL-------GEDTIVAHNA-SFDMRFLKSNAKMLRLPEPKN-IV 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA+ MK ++ L+ L+ GI L S+H A+ D + + Q+
Sbjct: 120 IDTVFLAKRYMKHARNH-----KLETLKRMLGIRL--SSHNALDDCITCAAVYQK 167
>gi|115350920|ref|YP_772759.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
gi|115280908|gb|ABI86425.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
Length = 375
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 20/175 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG S RI EI ++ ST+ TLVNP + +P + GI+ DMV
Sbjct: 16 VFVDLETTGGSSAEHRITEIGVVEIGPLGVSTWTTLVNPGQSIPPFIQQLTGISDDMVR- 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P L P L + + LFVAHNA SFD FL EF R + N +
Sbjct: 75 -DAPSFASLAPTLFERLDGK-------LFVAHNA-SFDRGFLRAEFERAG--IAFNPDVL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
T+ L+R L ++ L AL E +G+ + + HRA+AD + L ++L
Sbjct: 124 CTVRLSRALFPR-----EARHGLDALIERHGL-VPAARHRALADADLLWQFWRQL 172
>gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
Length = 1433
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + ++ + K G + L VAHNA SFD+ FL F +C + P N
Sbjct: 477 LT--DAPEVGEV------FKKFEAWMGDHTL-VAHNA-SFDMGFLNVGFKKCGLDKPKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
Length = 1433
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + ++ + K G + L VAHNA SFD+ FL F +C + P N
Sbjct: 477 LT--DAPEVGEV------FKKFESWMGDHTL-VAHNA-SFDMGFLNVGFKKCGLDKPKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|399055572|ref|ZP_10743267.1| DNA polymerase III, alpha chain [Brevibacillus sp. CF112]
gi|398046781|gb|EJL39365.1| DNA polymerase III, alpha chain [Brevibacillus sp. CF112]
Length = 1434
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 106/216 (49%), Gaps = 24/216 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQV--PNAHVHGITTDMVC 186
+VFD ETTG + IIEIA + G E + L++P+ ++ + GIT DM+
Sbjct: 422 VVFDTETTGLNAAEHTIIEIAAVKMKGAEIIDQWTELIDPQLEIGPKTTEITGITNDML- 480
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
R +D + ++L K G + VAHNA FD F+ R E P N F
Sbjct: 481 -----RGKDTLDVVLRKFKEFT---GDAVLVAHNAE-FDKAFINACAKRIGME-PWNNPF 530
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+DTL LAR +M G N L +L + + + L+ +AHRA+ D L+ + Q++ D+
Sbjct: 531 LDTLPLAR-MMYKGMRNY----RLGSLAKKFNVELI-NAHRALDDTVALAHVFQQMLKDI 584
Query: 307 K----LSLCDLIERGFTPSDLINPKKKKKSKLVSNQ 338
K +L +L E+ +D + + + LV N+
Sbjct: 585 KEAQIKTLAELNEKSNEEADYKSGRPFHATILVKNK 620
>gi|365134462|ref|ZP_09343288.1| DNA polymerase III, alpha subunit, Gram-positive type
[Subdoligranulum sp. 4_3_54A2FAA]
gi|363614038|gb|EHL65541.1| DNA polymerase III, alpha subunit, Gram-positive type
[Subdoligranulum sp. 4_3_54A2FAA]
Length = 1442
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 91/201 (45%), Gaps = 31/201 (15%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFD+ETTG S + I EI + GE ++ + VNP +P + IT +MV
Sbjct: 408 VVFDLETTGLSPADCAITEIGAVVVENGEITESYNSFVNPGCHIPEEITKITNITDEMVA 467
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCS--YEVPNNW 244
D P E+ + L +V R + +AHNA FD+ FL C+ Y VP
Sbjct: 468 --DAPGQEEALRAFLEFVDGR-------VLIAHNAHGFDIRFL----KACAERYGVPFGN 514
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
++DTL LA+ L G N L + +Y IP HRA D L+ I ++
Sbjct: 515 TYIDTLPLAQALY-LGLRNY----KLDTIGKYLEIPPF-QHHRACDDAKALAQIYVKMIE 568
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
DL L RG T + +N
Sbjct: 569 DLAL-------RGVTALENVN 582
>gi|78065586|ref|YP_368355.1| DNA polymerase III subunit epsilon [Burkholderia sp. 383]
gi|77966331|gb|ABB07711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
Length = 378
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 87/179 (48%), Gaps = 21/179 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG S RI EI ++ ST+ TLVNP + +P + GI+ +MV
Sbjct: 17 VFVDLETTGGSPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDEMVR- 75
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P L P L + + LFVAHNA SFD FL EF R + N +
Sbjct: 76 -DAPSFASLAPALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAGFAF--NPDVL 124
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
T+ L+R L ++ L AL E +G+ + + HRA+AD + L L RL D+
Sbjct: 125 CTVRLSRALFPR-----ETRHGLDALIERHGL-VPAARHRALADADLL-LQFWRLLHDI 176
>gi|374622847|ref|ZP_09695367.1| putative PAS/PAC sensor protein [Ectothiorhodospira sp. PHS-1]
gi|373941968|gb|EHQ52513.1| putative PAS/PAC sensor protein [Ectothiorhodospira sp. PHS-1]
Length = 713
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 90/182 (49%), Gaps = 24/182 (13%)
Query: 127 VTAIVFDIETTGFSR-ENERIIEIAFQDLLGGE---NSTFQTLVNPKRQVPNAHV--HGI 180
+T +VFD E TG + II IA ++ G TF+ L+NP +P A + HGI
Sbjct: 506 LTFVVFDCEMTGLDPVGGDEIISIAGVRVVKGRVLTGETFERLINPGFSIPAASIRFHGI 565
Query: 181 TTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEV 240
T D V D P + +++P+ +V G + VAHNA +FD+ F+ + +RC
Sbjct: 566 TDDQV--RDKPPVTEVLPLFKAFV-------GDAVMVAHNA-AFDMKFISMKEARCGISF 615
Query: 241 PNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
PN +DTL L+ + + SL AL E YGI + G H A+ D + +L
Sbjct: 616 PNP--VLDTLLLSVMVEDEEEDH-----SLDALLERYGIQISGR-HTALGDAVATAELLV 667
Query: 301 RL 302
RL
Sbjct: 668 RL 669
>gi|228998363|ref|ZP_04157954.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17]
gi|228761284|gb|EEM10239.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17]
Length = 315
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N+RII++A E F + VNP+R +PN + GIT V
Sbjct: 11 VVIDFETTGFNPYNDRIIQVAAVRYRNHELADQFVSFVNPERFIPNRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +++++P+ L ++ G VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIQEVLPLFLAFL-------GEDTIVAHNA-SFDMRFLKSNANMLRLPEPKN-IV 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA+ MK ++ L+ L+ GI L S+H A+ D + + Q+
Sbjct: 120 IDTVFLAKRYMKHAPNH-----KLETLKRMLGICL--SSHNALDDCITCAAVYQK 167
>gi|150018035|ref|YP_001310289.1| DNA polymerase III subunit alpha [Clostridium beijerinckii NCIMB
8052]
gi|149904500|gb|ABR35333.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
8052]
Length = 1446
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 25/190 (13%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVCK 187
V D+ETTGFS + E+I EI + G+ F T VNP++ +P V IT DMV
Sbjct: 425 VLDLETTGFSPQTEKITEIGVMKIKDGKVIDKFSTFVNPQKSIPMRVVEVTKITDDMVKN 484
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
+ ++ + P LL +++ + VAHNA FD+ FL + YE ++ ++
Sbjct: 485 AET--IDKVFPKLLEFIEGS-------VLVAHNA-DFDIGFLKHNAKVLGYEF--DFTYI 532
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN----CLSLILQRLT 303
DTL LA+++ S L + + GI V AHRA+ DV+ ++I+++L
Sbjct: 533 DTLGLAQDVFPDYKS-----YKLGRIAKNLGIK-VEVAHRALDDVDTTVKVFNIIIEKLK 586
Query: 304 FDLKLSLCDL 313
+L D+
Sbjct: 587 ERGAQTLSDI 596
>gi|172059933|ref|YP_001807585.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
gi|171992450|gb|ACB63369.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
Length = 375
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 20/175 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG S RI EI ++ ST+ TLVNP + +P + GI+ DMV
Sbjct: 16 VFVDLETTGGSTAEHRITEIGVVEIGPLGVSTWTTLVNPGQSIPPFIQQLTGISDDMVR- 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P L P L + + LFVAHNA SFD FL EF R + N +
Sbjct: 75 -DAPSFASLAPTLFERLDGK-------LFVAHNA-SFDRGFLRAEFERAG--IAFNPDVL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
T+ L+R L ++ L AL E +G+ + + HRA+AD + L ++L
Sbjct: 124 CTVRLSRALFPR-----EARHGLDALIERHGL-VPAARHRALADADLLWQFWRQL 172
>gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
Length = 1434
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 24/217 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQV--PNAHVHGITTDMVC 186
+VFD ETTG + IIEIA + G E + L++P+ Q+ + GIT +M+
Sbjct: 422 VVFDTETTGLNASEHTIIEIAAVKMKGAEIIDQWTELIDPQLQIGPKTTEITGITNEML- 480
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
R ++ + ++L K G + VAHNA FD F+ R E P F
Sbjct: 481 -----RGQETLDVVLRKFKDFT---GDAILVAHNAE-FDKAFINACAKRIGME-PWTNPF 530
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+DTL LAR LM G N L +L + + + L+ +AHRA+ D L+ + Q++ D+
Sbjct: 531 LDTLPLAR-LMYKGMRNY----RLGSLAKKFNVELI-NAHRALDDTVALAHVFQQMLKDI 584
Query: 307 K----LSLCDLIERGFTPSDLINPKKKKKSKLVSNQE 339
K SL +L E+ +D + + + LV N+E
Sbjct: 585 KEAEIKSLAELNEKSNEEADYKSGRPFHATILVQNKE 621
>gi|374582452|ref|ZP_09655546.1| DNA polymerase III, alpha chain [Desulfosporosinus youngiae DSM
17734]
gi|374418534|gb|EHQ90969.1| DNA polymerase III, alpha chain [Desulfosporosinus youngiae DSM
17734]
Length = 1448
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 37/199 (18%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T V D+ETTGFS E+I EI L G+ F VNP++ +P V IT DM
Sbjct: 424 TYCVLDLETTGFSAVTEKITEIGIMKLKDGKVIDQFSCFVNPEKPIPARVIEVTNITDDM 483
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D ++ + P LL +++ + VAHNA FD+ FL + Y+ ++
Sbjct: 484 V--KDAETIDQVFPKLLEFIEGS-------VLVAHNAE-FDMGFLKHNAKVLGYDF--DY 531
Query: 245 LFMDTLTLARELM------KSG--GSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
++DTL+LA+EL K G NL KV + AHRA+ DV+
Sbjct: 532 TYLDTLSLAKELFPDYKTYKLGRIAKNLGFKVEV--------------AHRALDDVDTTV 577
Query: 297 LILQRLTFDLKLSLCDLIE 315
+ + + LK + +E
Sbjct: 578 KVFKVMLEKLKQRGAETLE 596
>gi|312143668|ref|YP_003995114.1| DNA polymerase III subunit alpha [Halanaerobium hydrogeniformans]
gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium hydrogeniformans]
Length = 1401
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 30/181 (16%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFD+ETTG + IIEI + GE + F+T ++ + VP + GI T M+
Sbjct: 389 VVFDLETTGLNPSQHDIIEIGAVKIKAGEKIAEFETFIDIDKNVPAKITEITGINTSMLT 448
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLIN-----EFSRCSYEVP 241
P+++ I + ++ G + VAHNA FD FL E +R Y V
Sbjct: 449 G--APKLKAAIERFIDFI-------GDGVLVAHNA-DFDYGFLRTALQKLEINRKEYTV- 497
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DTL L+R L+K + L L EY+ + L HRA+AD + + IL++
Sbjct: 498 -----LDTLALSRALIKDSKN-----YKLNTLAEYFSVEL-DDHHRALADADATAEILKK 546
Query: 302 L 302
L
Sbjct: 547 L 547
>gi|206976138|ref|ZP_03237047.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
H3081.97]
gi|217961012|ref|YP_002339580.1| DNA polymerase III subunit epsilon [Bacillus cereus AH187]
gi|222097065|ref|YP_002531122.1| DNA polymerase iii subunit epsilon [Bacillus cereus Q1]
gi|229140223|ref|ZP_04268781.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
gi|375285515|ref|YP_005105954.1| DNA polymerase III subunit epsilon [Bacillus cereus NC7401]
gi|423353298|ref|ZP_17330925.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
IS075]
gi|423374588|ref|ZP_17351926.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
AND1407]
gi|423567509|ref|ZP_17543756.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-A12]
gi|206745592|gb|EDZ56990.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
H3081.97]
gi|217066526|gb|ACJ80776.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH187]
gi|221241123|gb|ACM13833.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
gi|228643309|gb|EEK99582.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
gi|358354042|dbj|BAL19214.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus
NC7401]
gi|401089938|gb|EJP98102.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
IS075]
gi|401093876|gb|EJQ01962.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
AND1407]
gi|401213568|gb|EJR20307.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-A12]
Length = 315
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 21/178 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPQNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+ F
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQKCAF 170
>gi|433546013|ref|ZP_20502351.1| DNA polymerase III alpha subunit [Brevibacillus agri BAB-2500]
gi|432182629|gb|ELK40192.1| DNA polymerase III alpha subunit [Brevibacillus agri BAB-2500]
Length = 1464
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 106/216 (49%), Gaps = 24/216 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQV--PNAHVHGITTDMVC 186
+VFD ETTG + IIEIA + G E + L++P+ ++ + GIT DM+
Sbjct: 452 VVFDTETTGLNAAEHTIIEIAAVKMKGAEIIDQWTELIDPQLEIGPKTTEITGITNDML- 510
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
R +D + ++L K G + VAHNA FD F+ R E P N F
Sbjct: 511 -----RGKDTLDVVLRKFKEFT---GDAVLVAHNAE-FDKAFINACAKRIGME-PWNNPF 560
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+DTL LAR +M G N L +L + + + L+ +AHRA+ D L+ + Q++ D+
Sbjct: 561 LDTLPLAR-MMYKGMRNY----RLGSLAKKFNVELI-NAHRALDDTVALAHVFQQMLKDI 614
Query: 307 KLS----LCDLIERGFTPSDLINPKKKKKSKLVSNQ 338
K + L +L E+ +D + + + LV N+
Sbjct: 615 KEAQIKTLAELNEKSNEEADYKSGRPFHATILVKNK 650
>gi|417896079|ref|ZP_12540046.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21235]
gi|341840980|gb|EGS82452.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21235]
Length = 1438
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ + P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--NAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>gi|238060312|ref|ZP_04605021.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
gi|237882123|gb|EEP70951.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
Length = 604
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 93/213 (43%), Gaps = 18/213 (8%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG + + I EI + GGE TLVNP +P + GIT M
Sbjct: 51 TFVVVDLETTGGAPDGGGITEIGAVKVRGGEELGVLATLVNPGVPIPPFITVLTGITQAM 110
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ P +E ++P L +V + VAHNA +DV FL +R Y PN
Sbjct: 111 LVP--APPIEQVLPSFLEFVAD-------AVLVAHNA-PYDVGFLKAACARHGYRWPNPR 160
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DT LAR ++ G +P++ L L Y+ HRA+ D +L L
Sbjct: 161 V-LDTAALARRVL--GRDEVPNR-KLGTLASYFRT-ATRPTHRALDDAKATVDVLHGLIA 215
Query: 305 DLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L D + + + P +++K L
Sbjct: 216 RLGGHRVDTVGEAIEFARAVTPTQRRKRHLADG 248
>gi|20807845|ref|NP_623016.1| DNA polymerase III PolC [Thermoanaerobacter tengcongensis MB4]
gi|24418364|sp|Q8RA32.1|DPO3_THETN RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|20516408|gb|AAM24620.1| DNA polymerase III alpha subunit, the Gram-positive type
[Thermoanaerobacter tengcongensis MB4]
Length = 1401
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 25/178 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA----HVHGITTDM 184
+VFDIETTG S N+ IIEI + + TF+T VNP Q+P + + GI M
Sbjct: 389 VVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNP--QIPISSFITKLTGIDESM 446
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P +E+++P L + K G +L VAHNA +FDV F+ ++ + V N
Sbjct: 447 V--KDAPLIEEVLPKFLEFAK------GAVL-VAHNA-NFDVSFIKSKAKKLGLTVENTV 496
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
L DTL L+R L + L L E++ + L+ HRA+ D + I ++
Sbjct: 497 L--DTLELSRHLYQD-----LKNYKLDTLAEFFEVKLL-HHHRAVEDAKATAEIFIKM 546
>gi|254974851|ref|ZP_05271323.1| DNA polymerase III PolC-type [Clostridium difficile QCD-66c26]
gi|255313978|ref|ZP_05355561.1| DNA polymerase III PolC-type [Clostridium difficile QCD-76w55]
gi|255516658|ref|ZP_05384334.1| DNA polymerase III PolC-type [Clostridium difficile QCD-97b34]
gi|255649757|ref|ZP_05396659.1| DNA polymerase III PolC-type [Clostridium difficile QCD-37x79]
gi|260682913|ref|YP_003214198.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
gi|260686511|ref|YP_003217644.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
gi|384360501|ref|YP_006198353.1| DNA polymerase III PolC-type [Clostridium difficile BI1]
gi|260209076|emb|CBA62219.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
gi|260212527|emb|CBE03476.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
Length = 1432
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 33/206 (16%)
Query: 118 AENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN----STFQTLVNPKRQVP 173
A +K+L++ T +VFDIETTGFS N++I EI + EN F L+NP++ +
Sbjct: 409 ANDKELSQ--TFVVFDIETTGFSNTNDKITEIGAVKI---ENFKIVDRFSELINPEKDIS 463
Query: 174 N--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLIN 231
+ GIT +++ D P +E+++P + +V G + VAHNA FD F I+
Sbjct: 464 YKIQELTGITNELI--KDKPTIEEILPKFMEFV-------GDSVLVAHNAE-FDTGF-IS 512
Query: 232 EFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
+ R + NN +DTL LAR ++ NL + L + + GIPL+ + HRA+ D
Sbjct: 513 QKCREQGLLYNNKK-VDTLMLARVML----PNL-KRHRLNVVAKELGIPLL-NHHRAVDD 565
Query: 292 VNCLSLI----LQRLTFDLKLSLCDL 313
+LI LQ LT +L D+
Sbjct: 566 AEATALIFNKFLQMLTEKGAKTLSDV 591
>gi|254479461|ref|ZP_05092788.1| DNA polymerase III, alpha subunit, Gram-positive type
[Carboxydibrachium pacificum DSM 12653]
gi|214034604|gb|EEB75351.1| DNA polymerase III, alpha subunit, Gram-positive type
[Carboxydibrachium pacificum DSM 12653]
Length = 1375
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 25/178 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA----HVHGITTDM 184
+VFDIETTG S N+ IIEI + + TF+T VNP Q+P + + GI M
Sbjct: 389 VVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNP--QIPISSFITKLTGIDESM 446
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P +E+++P L + K G +L VAHNA +FDV F+ ++ + V N
Sbjct: 447 V--KDAPLIEEVLPKFLEFAK------GAVL-VAHNA-NFDVSFIKSKAKKLGLTVENTV 496
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
L DTL L+R L + L L E++ + L+ HRA+ D + I ++
Sbjct: 497 L--DTLELSRHLYQD-----LKNYKLDTLAEFFEVKLL-HHHRAVEDAKATAEIFIKM 546
>gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei
TREU927]
gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei
gambiense DAL972]
Length = 1404
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVP--NAHVHGITTDMVCK 187
+VFDIE+TG + + IIE+A D + E ++F +LVNP+R +P + +H IT MV
Sbjct: 764 VVFDIESTGLNTATDAIIEVAAFDPV--EGTSFSSLVNPQRPIPPQSTAIHHITDSMV-- 819
Query: 188 PDVPRMEDLIPILLHYVK---SRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
PR+ ++ Y++ ++ + + HN + D P L F S + N
Sbjct: 820 QGAPRLSEVTQAFARYLRLSEGQRDEDEVTILIGHNVFALDEPLLRRAFRSESVDT-ENL 878
Query: 245 LFMDTLTLARELMKS-GGSNLPSK------------VSLQALREYYGIPLVGSAHRAMAD 291
LF D+LT+ + L + GS SK + L +L E + G HRA D
Sbjct: 879 LFCDSLTILKGLKQELQGSKKDSKFDRGVLDILTNSLRLSSLVEGLRVEADGELHRADTD 938
Query: 292 VNCLSLIL 299
L +L
Sbjct: 939 AKMLWFVL 946
>gi|253579638|ref|ZP_04856907.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849139|gb|EES77100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 1489
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 98/199 (49%), Gaps = 28/199 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS +IIEI + GE F T VNPK +P + I MV
Sbjct: 463 VVFDIETTGFSSLTCQIIEIGAVLVENGEITDRFSTFVNPKVPIPFRIEQLTSINDSMVM 522
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P L + K + VAHNA FD+ F++ R + +++ +
Sbjct: 523 --DAPTIEEVLPKFLEFSKD-------AVMVAHNA-DFDMGFIMKNCDRLG--IAHDFTY 570
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+DT+ +AR L+ + ++ L + + G+ L + HRA+ D C + I + +
Sbjct: 571 VDTVGMARFLLPA-----LNRFKLDTVAKAVGVSL-ENHHRAVDDAACTAEIFVKF---V 621
Query: 307 KLSLCDLIERGFTPSDLIN 325
K+ L ER D++N
Sbjct: 622 KM----LEERDIRDVDMLN 636
>gi|309811312|ref|ZP_07705099.1| exonuclease [Dermacoccus sp. Ellin185]
gi|308434619|gb|EFP58464.1| exonuclease [Dermacoccus sp. Ellin185]
Length = 221
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 21/174 (12%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLL--GGENSTFQTLVNPKRQVPNAHVHGITTDMVCKP 188
V D+ET+G R+IE+A L GG + +LV + H+HG++ V
Sbjct: 17 VVDVETSGLDPLRHRVIEVAVTQLTPSGGLEREWSSLVRARGGTGPVHIHGLSDYDV--R 74
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
D P DL+ L + R + VAHNA +FD FL E R E+P + +
Sbjct: 75 DAPGFADLVDELSELLDGR-------ILVAHNA-AFDWAFLAAEARRAGRELPVS-ERLC 125
Query: 249 TLTLARELMKSGGSNLPS-KVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
T LAR G LP+ + L L EY+ IP V +AHRA DV L +L+R
Sbjct: 126 TWHLAR------GLELPTDNLRLGTLAEYWSIP-VENAHRAGDDVRVLVEVLRR 172
>gi|312135559|ref|YP_004002897.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis
OL]
gi|311775610|gb|ADQ05097.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis
OL]
Length = 1402
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 21/184 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTGF + +IIEI + G+ F T V+P+ ++P + + GI DM
Sbjct: 389 TFVVVDVETTGFDSQKNKIIEIGAVKIENGQITERFSTFVDPEGKIPVRISELTGIYQDM 448
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V K P++ D I ++ + G +L VAHNA+ FD+ FL + C + ++
Sbjct: 449 VDK--APKLRDAI------LEFEKFASGSVL-VAHNAQ-FDIGFLKKAYQECG--IIFDY 496
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
++DTL L+R L+ S+ +KV+ E+ + L HRA +D + I L
Sbjct: 497 TYIDTLELSRRLLTGLSSHKLNKVA-----EFLNVEL-RHHHRADSDAETTAGIFTSLME 550
Query: 305 DLKL 308
LK+
Sbjct: 551 RLKV 554
>gi|258653407|ref|YP_003202563.1| hypothetical protein Namu_3243 [Nakamurella multipartita DSM 44233]
gi|258556632|gb|ACV79574.1| DNA polymerase III, epsilon subunit [Nakamurella multipartita DSM
44233]
Length = 613
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG S E I EI + GG+ F TLV+P R +P + GIT
Sbjct: 47 VTFVVVDLETTGGSPATEAITEIGAVKVRGGQVLGEFATLVDPGRTIPPQITMLTGITNA 106
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV D PR+ ++P L + + G +L VAHNAR FDV FL +R P
Sbjct: 107 MVY--DAPRISSVLPAFLEFAR------GSVL-VAHNAR-FDVGFLRAACARQQVPWPGP 156
Query: 244 WLFMDTLTLARELM 257
+DT+ LAR+++
Sbjct: 157 -AVVDTVRLARKVL 169
>gi|228928662|ref|ZP_04091698.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229123127|ref|ZP_04252334.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
gi|228660421|gb|EEL16054.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
gi|228830981|gb|EEM76582.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 315
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNPKR +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPKRPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|15896683|ref|NP_350032.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
824]
gi|337738647|ref|YP_004638094.1| DNA polymerase III subunit alpha [Clostridium acetobutylicum DSM
1731]
gi|384460158|ref|YP_005672578.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum EA
2018]
gi|15026532|gb|AAK81372.1|AE007841_7 DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
824]
gi|325510847|gb|ADZ22483.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum EA
2018]
gi|336292095|gb|AEI33229.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum DSM
1731]
Length = 1452
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 21/180 (11%)
Query: 117 IAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN- 174
+ KD + T V D+ETTGFS + E+I EI G+ F VNP++ +P
Sbjct: 416 VTNAKDQSIDTTYCVLDLETTGFSPKTEKITEIGIMKYENGKVIDKFSLFVNPEKPIPAR 475
Query: 175 -AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEF 233
V IT DMV + ++ + P +L ++K + VAHNA SFD+ FL +
Sbjct: 476 VVEVTNITDDMVKNAET--IDKVFPKMLEFIKGS-------VLVAHNA-SFDIGFLKHNA 525
Query: 234 SRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN 293
YE ++ ++DTL+LA+ + S L + + GI V AHRA+ DV+
Sbjct: 526 KVLGYEF--DFTYLDTLSLAQAVFPQYKS-----YKLGRIAKNLGIK-VEVAHRALDDVD 577
>gi|333370994|ref|ZP_08462962.1| DNA polymerase III PolC, partial [Desmospora sp. 8437]
gi|332976806|gb|EGK13634.1| DNA polymerase III PolC [Desmospora sp. 8437]
Length = 1099
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 96/201 (47%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +VFD+ETTG S ++ IIE+A + GE F++ +NP R++ + GIT +M
Sbjct: 415 TYVVFDVETTGLSAVHDEIIELAAVKVKDGEIIDRFESFINPHRKLTATITELTGITDEM 474
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P + +++P L +++ + VAHNAR FD+ FL + + P +
Sbjct: 475 VV--DAPELSEVLPRYLEFIEG-------TVLVAHNAR-FDMGFLQAACKKTGCQ-PVDH 523
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DTL L R L ++ L L + + I L HRA+ D +L R+
Sbjct: 524 PVLDTLELGRFLYPRLKNH-----RLNTLCKQFDIELT-QHHRAIYDAEATGFLLWRM-- 575
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D IER D +N
Sbjct: 576 -----LQDCIERKIVRLDQLN 591
>gi|296269280|ref|YP_003651912.1| DNA polymerase III subunit epsilon [Thermobispora bispora DSM
43833]
gi|296092067|gb|ADG88019.1| DNA polymerase III, epsilon subunit [Thermobispora bispora DSM
43833]
Length = 574
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 87/182 (47%), Gaps = 22/182 (12%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTD 183
VT +VFD+ETTG S + I EI + GG+ F TL++P R +P + + GIT
Sbjct: 18 VTFVVFDLETTGGSPAEDAITEIGAVKVCGGQVRGEFATLIDPGRPIPPFISVLTGITDA 77
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P++ ++P L +++ VAHNA FD+ FL + Y P N
Sbjct: 78 MVVA--APKLPQVLPAFLEFIRG-------ATLVAHNA-PFDLGFLRAACAEYGYPPPAN 127
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+ +DT LAR ++ + L L Y+ HRA+AD V+ L +L
Sbjct: 128 PV-VDTADLARRMLTRDET---PDCKLATLARYFRS-ATEPCHRALADARATVDVLHGLL 182
Query: 300 QR 301
+R
Sbjct: 183 ER 184
>gi|257068588|ref|YP_003154843.1| hypothetical protein Bfae_14220 [Brachybacterium faecium DSM 4810]
gi|256559406|gb|ACU85253.1| exonuclease, DNA polymerase III, epsilon subunit family
[Brachybacterium faecium DSM 4810]
Length = 551
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 22/194 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
T +V D+ETTG + I EI + GGE F+T V+P+R +P A + GIT
Sbjct: 19 ATLVVVDLETTGTDPAADAITEIGAVKVRGGEVLGEFRTFVDPERPIPAYIASLTGITDA 78
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
V + P + ++P+ L + G VAHNAR FD+ FL + + C P
Sbjct: 79 AVA--EAPSIRTVLPMFLDFA-------GDAALVAHNAR-FDIGFLSAQAAACEITWPRP 128
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+ +DTL LAR + + + L L + G + HRA++D V+ L I+
Sbjct: 129 RV-LDTLALARTVFR---RDEVRDHRLSTLARHVGAGITPD-HRALSDARATVDVLHAII 183
Query: 300 QRLTFDLKLSLCDL 313
+RL +L DL
Sbjct: 184 ERLGPSGASTLEDL 197
>gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei]
Length = 1404
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVP--NAHVHGITTDMVCK 187
+VFDIE+TG + + IIE+A D + E ++F +LVNP+R +P + +H IT MV
Sbjct: 764 VVFDIESTGLNTATDAIIEVAAFDPV--EGTSFSSLVNPQRPIPPQSTAIHHITDSMV-- 819
Query: 188 PDVPRMEDLIPILLHYVK---SRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
PR+ ++ Y++ ++ + + HN + D P L F S + N
Sbjct: 820 QGAPRLSEVTQAFARYLRLSEGQRDEDEVTILIGHNVFALDEPLLRRAFRSESVDT-ENL 878
Query: 245 LFMDTLTLARELMKS-GGSNLPSK------------VSLQALREYYGIPLVGSAHRAMAD 291
LF D+LT+ + L + GS SK + L +L E + G HRA D
Sbjct: 879 LFCDSLTILKGLKQELQGSKKDSKFDRGVLDILTNSLRLSSLVEGLRVEADGELHRADTD 938
Query: 292 VNCLSLIL 299
L +L
Sbjct: 939 AKMLWFVL 946
>gi|350566734|ref|ZP_08935378.1| DNA polymerase III PolC [Peptoniphilus indolicus ATCC 29427]
gi|348661892|gb|EGY78568.1| DNA polymerase III PolC [Peptoniphilus indolicus ATCC 29427]
Length = 1408
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 21/178 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTDM 184
T +VFDIETTGFS + I EI + G F L+NP R +P + GIT +
Sbjct: 397 TFVVFDIETTGFSPRTDEITEIGAVKVKDGVIIDHFSQLINPNRPIPEEVQKLTGITPAL 456
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ + P ++ +I + K + VAHNA +FD F+ + ++ Y + N+
Sbjct: 457 ISEE--PMIDKVIFDFYDFCKDT-------VLVAHNA-AFDTRFIRRDMTK--YNLKFNF 504
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL LAR L+ + +L AL + +G+ LV +AHRA+ D +L+ +L
Sbjct: 505 DVVDTLYLARALVPD-----MKRFNLGALSKKFGVSLV-NAHRAVNDAQATALVFIKL 556
>gi|183983226|ref|YP_001851517.1| hypothetical protein MMAR_3235 [Mycobacterium marinum M]
gi|183176552|gb|ACC41662.1| conserved hypothetical protein [Mycobacterium marinum M]
Length = 674
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 107/241 (44%), Gaps = 34/241 (14%)
Query: 112 DIEQIIAENKDLAKL--VTAIVFDIETTGF------SRENERIIEIAFQDLLGGEN-STF 162
D+ A D L T +V D+ETTG + + I EI + GG F
Sbjct: 38 DLTDPAAAQADDVSLRETTFVVVDLETTGGRATGTEASPPDAITEIGAVKVRGGVILGEF 97
Query: 163 QTLVNPKRQVPNAHVH--GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHN 220
TLV+P+R +P V GITT M+C D P ++ ++P+ +V G + VAHN
Sbjct: 98 ATLVDPQRSIPPQIVRLTGITTAMLC--DAPTIDSVLPMFFEFV-------GNSVLVAHN 148
Query: 221 ARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIP 280
A FD+ FL RC P + + T+ LAR ++ PS V L AL + +
Sbjct: 149 A-GFDIGFLRAAAGRCDIAWPGSKVLC-TVRLARRVLSR--EEAPS-VRLAALARLFSV- 202
Query: 281 LVGSAHRAMAD----VNCLSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVS 336
HRA+ D V L +++R+ S +L R + P + P +++K L
Sbjct: 203 ATQPTHRALDDARATVEVLHALIERVGNQGVHSYAEL--RAYLPG--VTPAQRRKRVLAD 258
Query: 337 N 337
Sbjct: 259 G 259
>gi|296451302|ref|ZP_06893042.1| DNA polymerase III PolC [Clostridium difficile NAP08]
gi|296880346|ref|ZP_06904309.1| DNA polymerase III PolC [Clostridium difficile NAP07]
gi|296259908|gb|EFH06763.1| DNA polymerase III PolC [Clostridium difficile NAP08]
gi|296428587|gb|EFH14471.1| DNA polymerase III PolC [Clostridium difficile NAP07]
Length = 1432
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 33/206 (16%)
Query: 118 AENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN----STFQTLVNPKRQVP 173
A +K+L++ T +VFDIETTGFS N++I EI + EN F L+NP++ +
Sbjct: 409 ANDKELSQ--TFVVFDIETTGFSNTNDKITEIGAVKI---ENFKIVDRFSELINPEKDIS 463
Query: 174 N--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLIN 231
+ GIT +++ D P +E+++P + +V G + VAHNA FD F I+
Sbjct: 464 YKIQELTGITNELI--KDKPTIEEVLPKFMEFV-------GDSVLVAHNAE-FDTGF-IS 512
Query: 232 EFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
+ R + NN +DTL LAR ++ NL + L + + GIPL+ + HRA+ D
Sbjct: 513 QKCREQGLLYNNKK-VDTLMLARVML----PNL-KRHRLNVVAKELGIPLL-NHHRAVDD 565
Query: 292 VNCLSLI----LQRLTFDLKLSLCDL 313
+LI LQ LT +L D+
Sbjct: 566 AEATALIFNKFLQMLTEKGAKTLSDV 591
>gi|255655317|ref|ZP_05400726.1| DNA polymerase III PolC-type [Clostridium difficile QCD-23m63]
Length = 1432
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 33/206 (16%)
Query: 118 AENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN----STFQTLVNPKRQVP 173
A +K+L++ T +VFDIETTGFS N++I EI + EN F L+NP++ +
Sbjct: 409 ANDKELSQ--TFVVFDIETTGFSNTNDKITEIGAVKI---ENFKIVDRFSELINPEKDIS 463
Query: 174 N--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLIN 231
+ GIT +++ D P +E+++P + +V G + VAHNA FD F I+
Sbjct: 464 YKIQELTGITNELI--KDKPTIEEVLPKFMEFV-------GDSVLVAHNAE-FDTGF-IS 512
Query: 232 EFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
+ R + NN +DTL LAR ++ NL + L + + GIPL+ + HRA+ D
Sbjct: 513 QKCREQGLLYNNKK-VDTLMLARVML----PNL-KRHRLNVVAKELGIPLL-NHHRAVDD 565
Query: 292 VNCLSLI----LQRLTFDLKLSLCDL 313
+LI LQ LT +L D+
Sbjct: 566 AEATALIFNKFLQMLTEKGAKTLSDV 591
>gi|346306727|ref|ZP_08848881.1| DNA polymerase III, alpha subunit, Gram-positive type [Dorea
formicigenerans 4_6_53AFAA]
gi|345908085|gb|EGX77753.1| DNA polymerase III, alpha subunit, Gram-positive type [Dorea
formicigenerans 4_6_53AFAA]
Length = 1395
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 30/218 (13%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D++ + K + T +VFD+ETTGFS ++IIEI + GE + T VNPK
Sbjct: 335 DLQDVAVNEKGQSLKGTYVVFDLETTGFSSAKDKIIEIGAVKVENGEITDKYSTFVNPKI 394
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + IT +MV + P +E ++P L +V G + VAHNA SFDV F
Sbjct: 395 PIPFRITQLTSITDEMVMES--PEIETILPQFLKFV-------GDAVLVAHNA-SFDVSF 444
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
I E R P N+ +DT+ LAR L+ + SK L + + I HRA
Sbjct: 445 -IEENCRQQGIEP-NFTSVDTVGLARVLLPT-----LSKFKLNVVAKALNISQE-HHHRA 496
Query: 289 MADVNCLSLILQRLTFDLKLSLCDLI-ERGFTPSDLIN 325
+ D R+T ++ + ++ ERG D +N
Sbjct: 497 VDDA--------RVTAEIYVKFIQMLEERGIETLDQMN 526
>gi|423082305|ref|ZP_17070897.1| DNA polymerase III, alpha subunit [Clostridium difficile
002-P50-2011]
gi|423087697|ref|ZP_17076083.1| DNA polymerase III, alpha subunit [Clostridium difficile
050-P50-2011]
gi|357544011|gb|EHJ26017.1| DNA polymerase III, alpha subunit [Clostridium difficile
050-P50-2011]
gi|357548631|gb|EHJ30491.1| DNA polymerase III, alpha subunit [Clostridium difficile
002-P50-2011]
Length = 1432
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 33/206 (16%)
Query: 118 AENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN----STFQTLVNPKRQVP 173
A +K+L++ T +VFDIETTGFS N++I EI + EN F L+NP++ +
Sbjct: 409 ANDKELSQ--TFVVFDIETTGFSNTNDKITEIGAVKI---ENFKIVDRFSELINPEKDIS 463
Query: 174 N--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLIN 231
+ GIT +++ D P +E+++P + +V G + VAHNA FD F I+
Sbjct: 464 YKIQELTGITNELI--KDKPTIEEVLPKFMEFV-------GDSVLVAHNAE-FDTGF-IS 512
Query: 232 EFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
+ R + NN +DTL LAR ++ NL + L + + GIPL+ + HRA+ D
Sbjct: 513 QKCREQGLLYNNKK-VDTLMLARVML----PNL-KRHRLNVVAKELGIPLL-NHHRAVDD 565
Query: 292 VNCLSLI----LQRLTFDLKLSLCDL 313
+LI LQ LT +L D+
Sbjct: 566 AEATALIFNKFLQMLTEKGAKTLSDV 591
>gi|188589600|ref|YP_001920613.1| DNA polymerase III PolC [Clostridium botulinum E3 str. Alaska E43]
gi|188499881|gb|ACD53017.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum E3 str. Alaska E43]
Length = 1452
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 97/201 (48%), Gaps = 33/201 (16%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +VFD+ETTGFS N++IIEI + GE F VNPKR +P + I +M
Sbjct: 438 TFVVFDLETTGFSPINDKIIEIGAVKIKSGEIIDKFSCFVNPKRDIPYKITQLTSIDNNM 497
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFS--RCSYEVPN 242
V DV +E+++P + + + + VAHNA +FD F+ ++++P
Sbjct: 498 VKDADV--IENILPKFMEFCEG-------TVVVAHNA-AFDTGFIKKNCRDLNINFDLP- 546
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DT+TL R L KV L + ++ GI L + HRA+ D +
Sbjct: 547 ---ILDTVTLCRFLYPE-----LKKVKLNIVAKFLGISL-ENHHRAVDDA--------KA 589
Query: 303 TFDLKLSLCDLIERGFTPSDL 323
T D+ L + IE F +DL
Sbjct: 590 TADILLKSFEKIEEDFEINDL 610
>gi|251779220|ref|ZP_04822140.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|243083535|gb|EES49425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 1452
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 97/201 (48%), Gaps = 33/201 (16%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +VFD+ETTGFS N++IIEI + GE F VNPKR +P + I +M
Sbjct: 438 TFVVFDLETTGFSPINDKIIEIGAVKIKSGEIIDKFSCFVNPKRDIPYKITQLTSIDNNM 497
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFS--RCSYEVPN 242
V DV +E+++P + + + + VAHNA +FD F+ ++++P
Sbjct: 498 VKDADV--IENILPKFMEFCEG-------TVVVAHNA-AFDTGFIKKNCRDLNINFDLP- 546
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DT+TL R L KV L + ++ GI L + HRA+ D +
Sbjct: 547 ---ILDTVTLCRFLYPE-----LKKVKLNIVAKFLGISL-ENHHRAVDDA--------KA 589
Query: 303 TFDLKLSLCDLIERGFTPSDL 323
T D+ L + IE F +DL
Sbjct: 590 TADILLKSFEKIEEDFEINDL 610
>gi|126698903|ref|YP_001087800.1| DNA polymerase III PolC-type (PolIII) [Clostridium difficile 630]
gi|255100324|ref|ZP_05329301.1| DNA polymerase III PolC-type [Clostridium difficile QCD-63q42]
gi|255306262|ref|ZP_05350434.1| DNA polymerase III PolC-type [Clostridium difficile ATCC 43255]
gi|423090894|ref|ZP_17079180.1| DNA polymerase III, alpha subunit [Clostridium difficile
70-100-2010]
gi|115250340|emb|CAJ68162.1| DNA polymerase III PolC-type (PolIII) [Clostridium difficile 630]
gi|357556009|gb|EHJ37631.1| DNA polymerase III, alpha subunit [Clostridium difficile
70-100-2010]
Length = 1432
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 33/206 (16%)
Query: 118 AENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN----STFQTLVNPKRQVP 173
A +K+L++ T +VFDIETTGFS N++I EI + EN F L+NP++ +
Sbjct: 409 ANDKELSQ--TFVVFDIETTGFSNTNDKITEIGAVKI---ENFKIVDRFSELINPEKDIS 463
Query: 174 N--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLIN 231
+ GIT +++ D P +E+++P + +V G + VAHNA FD F I+
Sbjct: 464 YKIQELTGITNELI--KDKPTIEEVLPKFMEFV-------GDSVLVAHNAE-FDTGF-IS 512
Query: 232 EFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
+ R + NN +DTL LAR ++ NL + L + + GIPL+ + HRA+ D
Sbjct: 513 QKCREQGLLYNNKK-VDTLMLARVML----PNL-KRHRLNVVAKELGIPLL-NHHRAVDD 565
Query: 292 VNCLSLI----LQRLTFDLKLSLCDL 313
+LI LQ LT +L D+
Sbjct: 566 AEATALIFNKFLQMLTEKGAKTLSDV 591
>gi|256544693|ref|ZP_05472065.1| Gram-positive family DNA polymerase III, alpha subunit
[Anaerococcus vaginalis ATCC 51170]
gi|256399582|gb|EEU13187.1| Gram-positive family DNA polymerase III, alpha subunit
[Anaerococcus vaginalis ATCC 51170]
Length = 1398
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 23/177 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDMVC 186
IVFD+ETTG S+ ++I EI + GE F LVNP++ +P V GIT +MV
Sbjct: 385 IVFDLETTGLSKYIDKITEIGAVKIENGEIIEVFNELVNPEKMIPQKVVELTGITNEMVM 444
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P++++++P L + K FV N FD+ F+ SY+ ++
Sbjct: 445 --DKPKIDEVLPKFLEFSKDS-------YFVGQNT-DFDIGFIKEACDNLSYKF--EPIY 492
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGI-PLVGSAHRAMADVNCLSLILQRL 302
+DTL +AR + + G + SL L + G+ P + HRA D + I +L
Sbjct: 493 LDTLPMARAVFPTMG-----RFSLDKLAKKLGVGPF--NHHRASDDAMTTAKIFIKL 542
>gi|196034235|ref|ZP_03101645.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
gi|228947225|ref|ZP_04109519.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|195993309|gb|EDX57267.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
gi|228812472|gb|EEM58799.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
Length = 315
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNPKR +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPKRPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|399888409|ref|ZP_10774286.1| DNA polymerase III PolC [Clostridium arbusti SL206]
Length = 1445
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 11/147 (7%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D E II KD T +VFDIETTG S +N++IIEI + G TF T VNP+
Sbjct: 414 DGEPIIINPKDRTIEDTFVVFDIETTGLSSKNDKIIEIGAVKIKAGVIIDTFSTFVNPEM 473
Query: 171 QVPNAHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLI 230
++PN + + + D P +E ++P +++++ + VAHNA +FDV F I
Sbjct: 474 RIPNKIIDLTSINNDTVKDAPTIEKVLPDFINFIEDS-------ILVAHNA-NFDVSF-I 524
Query: 231 NEFSRCSYEVPNNWLFMDTLTLARELM 257
+ R +V N MDT+ L++ L+
Sbjct: 525 KKNCR-DMKVKCNNSVMDTVLLSKFLI 550
>gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
gi|158446535|gb|EDP23530.1| DNA polymerase III, alpha subunit, Gram-positive type [Parvimonas
micra ATCC 33270]
Length = 1431
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 21/194 (10%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D +I+ KD T +VFDIETTG S I EI + G+ F LVNP++
Sbjct: 400 DNPRILYNYKDGVNFDTFVVFDIETTGLSHLKNNITEIGAVRVESGKIVDVFNGLVNPEQ 459
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
++ + GIT +MV D P + +++P L + K+ +FVAHNA FD+ F
Sbjct: 460 EISQEITEITGITNEMVA--DKPLISEIMPKFLEFSKNA-------VFVAHNAE-FDISF 509
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ R + E N F+DT+ AR ++ ++ L L + G+ L+ + HRA
Sbjct: 510 IKTNCKRLNLEF--NPTFIDTMGFARAILPHLKNH-----KLNTLCKELGVNLL-NHHRA 561
Query: 289 MADVNCLSLILQRL 302
D + IL L
Sbjct: 562 SFDAEACAGILLEL 575
>gi|229174271|ref|ZP_04301804.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
gi|228609128|gb|EEK66417.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
Length = 318
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGITNYRV- 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + +AHNA SFD+ FL + S P N +
Sbjct: 73 -SDAPTIEEVLPLFLAFLHTN-------VIIAHNA-SFDMRFLKSNVSMLGLPEPQNKV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 123 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 170
>gi|213965283|ref|ZP_03393480.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
SK46]
gi|213952135|gb|EEB63520.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
SK46]
Length = 529
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 114/236 (48%), Gaps = 29/236 (12%)
Query: 109 QHYDIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVN 167
QH+ +E + D T +V D+ETTG +N+ IIEI GG+ TF + ++
Sbjct: 6 QHFPLEGTV---DDSLFNTTFVVVDLETTGLKAKNDHIIEIGAIKTRGGKTIGTFSSFID 62
Query: 168 PKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFD 225
P ++P+ + GITT V P++ +I L + + ++VAHNA+ FD
Sbjct: 63 PGMEIPDHITSLTGITTADVET--APQLGTVITQFLEFARGS-------VWVAHNAK-FD 112
Query: 226 VPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA 285
+ FL + + P+ + +DTLTLAR ++ S + S L L Y G P A
Sbjct: 113 IGFLRQACTDLGLDWPSPSV-VDTLTLARRVLDR--SQVGS-FKLSQLARYVGSP-NRPA 167
Query: 286 HRAMAD----VNCLSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
HRA+ D V+ L +++RL + +L+ ++P+ + P+ + K L
Sbjct: 168 HRALDDAIATVDVLHYLMERLAVYEVQTASELVH--YSPT--VAPEVRAKRHLADG 219
>gi|312793079|ref|YP_004026002.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180219|gb|ADQ40389.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 1402
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 21/183 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +V DIETTGF + +RIIEI + G+ F T V+P+ ++P + + GI DM
Sbjct: 389 TFVVVDIETTGFDSQRDRIIEIGAVKIENGQITDRFSTFVDPEGKIPVRISELTGIYQDM 448
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V K P++ D I + S + VAHNA+ FD+ FL + C + ++
Sbjct: 449 VDK--APKLIDAILEFERFASSS-------VLVAHNAQ-FDIGFLKKAYQECG--IIFDY 496
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
++DTL L+R L+ S +KV+ E+ + L HRA +D + I L
Sbjct: 497 TYIDTLELSRRLLTDLSSYKLNKVA-----EFLNVEL-RHHHRADSDAETTAGIFISLLE 550
Query: 305 DLK 307
LK
Sbjct: 551 RLK 553
>gi|423458293|ref|ZP_17435090.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5X2-1]
gi|401147190|gb|EJQ54697.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5X2-1]
Length = 315
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D +++ Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAVVYQK 167
>gi|423611819|ref|ZP_17587680.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD107]
gi|401246826|gb|EJR53170.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD107]
Length = 315
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELIDQFVSYVNPERPIPSRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLDTN-------IIVAHNA-SFDMRFLKSNVNMLGLPEPKNNV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A+ D + + QR
Sbjct: 120 IDTVFLAKKYMKYAPNH-----KLETLKRMLGIRL--SSHNALDDCITCAAVYQR 167
>gi|407701854|ref|YP_006826641.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Black Sea 11']
gi|407251001|gb|AFT80186.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Black Sea 11']
Length = 715
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 107/217 (49%), Gaps = 31/217 (14%)
Query: 97 VNKTEISKIQRIQHYDIEQIIAENK---DLAKLVTAIVFDIETTGFSRENERIIEIAFQD 153
+ + ++ IQR+Q + + K D A+ +V DIETTG + RI EI
Sbjct: 510 LRRNQLVSIQRLQQAGFDVAVTTVKWIRDSAQ--PYVVVDIETTGGNSSYNRITEIGMVK 567
Query: 154 LLGG-ENSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKP 210
L+GG E FQTL+NP+R++P+ + GI+ DMV D P ++ + ++ +
Sbjct: 568 LVGGKEVDRFQTLLNPQRRIPSNITRLTGISDDMVA--DAPLFAEVAEHVANFTED---- 621
Query: 211 GGYILFVAHNARSFDVPFLINEFSRC--SYEVPNNWLFMDTLTLARELMKSGGSNLPSKV 268
+FVAHN +FD F+ EF+R ++ P + RE M+ LPS
Sbjct: 622 ---AVFVAHNV-NFDYGFIKQEFARLEQTFRRPK-------MCTVRE-MRRTYPGLPS-Y 668
Query: 269 SLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
SL L ++ I + HRA++D + +L +L F+
Sbjct: 669 SLANLTRHFHIDM-EQHHRALSDAKAAAELL-KLAFE 703
>gi|398814377|ref|ZP_10573058.1| DNA polymerase III, alpha chain [Brevibacillus sp. BC25]
gi|398036646|gb|EJL29855.1| DNA polymerase III, alpha chain [Brevibacillus sp. BC25]
Length = 1434
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 107/217 (49%), Gaps = 24/217 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQV--PNAHVHGITTDMVC 186
+VFD ETTG + IIEIA + G E + L++P+ ++ + GIT +M+
Sbjct: 422 VVFDTETTGLNASEHTIIEIAAVKMKGSEIVDQWTELIDPQLEIGPKTTEITGITNEML- 480
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
R ++ + ++L K G + VAHNA FD F+ R E P + F
Sbjct: 481 -----RGQETLDVVLRKFKDFT---GDAILVAHNAE-FDKAFINACAKRIGME-PWSNSF 530
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+DTL LAR LM G N L +L + + + L+ +AHRA+ D L+ + Q++ D+
Sbjct: 531 LDTLPLAR-LMYKGMRNY----RLGSLAKKFNVELI-NAHRALDDTVALAQVFQQMLKDI 584
Query: 307 K----LSLCDLIERGFTPSDLINPKKKKKSKLVSNQE 339
K SL +L E+ +D + + + LV N+E
Sbjct: 585 KEAEIKSLAELNEKSNEEADYKSGRPFHATILVQNKE 621
>gi|410726952|ref|ZP_11365183.1| DNA polymerase III, alpha chain [Clostridium sp. Maddingley
MBC34-26]
gi|410599927|gb|EKQ54466.1| DNA polymerase III, alpha chain [Clostridium sp. Maddingley
MBC34-26]
Length = 1450
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 28/193 (14%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T V D+ETTGFS E E+I EI + G+ F T VNP++ +P V IT DM
Sbjct: 426 TYCVLDLETTGFSPETEKITEIGVMKIEDGKIIDKFSTFVNPQKSIPMRVVEVTKITDDM 485
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D ++ + P LL +++ + VAHNA FD+ FL + ++ ++
Sbjct: 486 V--RDAETIDKVFPKLLQFIEGS-------VLVAHNAE-FDIGFLKHNAKVLGHDF--DF 533
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
++DTL LA+++ S L + + GI V AHRA+ DV+ + F
Sbjct: 534 TYIDTLGLAQDVFPDYKS-----YKLGRIAKNLGIK-VDVAHRALDDVDTTVKV-----F 582
Query: 305 DLKLSLCDLIERG 317
++ L + L ERG
Sbjct: 583 NIMLEI--LKERG 593
>gi|347759242|ref|YP_004866803.1| DNA polymerase III exonuclease subunit epsilon [Gluconacetobacter
xylinus NBRC 3288]
gi|347578212|dbj|BAK82433.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter
xylinus NBRC 3288]
Length = 226
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 95/197 (48%), Gaps = 28/197 (14%)
Query: 130 IVFDIETTGFSR-ENERIIEIAFQDLLG----GENSTFQTLVNPKRQVPN--AHVHGIT- 181
I+FD ETTG + +R+IEIA +L+G G N F L++P+R VP + VHG T
Sbjct: 5 ILFDTETTGLDPLKGDRVIEIAALELVGDLPTGRN--FHVLIDPERDVPEEASRVHGFTR 62
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
D+ KP + ++ L +V G +AHNAR FD FL E +R V
Sbjct: 63 ADLEGKP---KFAEVAAGFLEFV-------GNDPLIAHNAR-FDFGFLNAELARAKQPVL 111
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQ 300
+ +DTL +ARE +P+ SL AL + I L + H A+ D L+ +
Sbjct: 112 DMGRMVDTLDMARERF----PGMPN--SLDALCRRFSIDLSERTTHNALLDCKLLAAVYL 165
Query: 301 RLTFDLKLSLCDLIERG 317
LT + L +E G
Sbjct: 166 ELTGGRQRGLSLAVEEG 182
>gi|238916793|ref|YP_002930310.1| DNA polymerase III subunit alpha [Eubacterium eligens ATCC 27750]
gi|238872153|gb|ACR71863.1| DNA polymerase III subunit alpha, the Gram-positive type
[Eubacterium eligens ATCC 27750]
Length = 1513
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 95/206 (46%), Gaps = 25/206 (12%)
Query: 61 RWSRRRITTGTEGSKKTIQS--HKLKNIKFEATSTTINVNKTEISKIQRIQHY---DIEQ 115
RW + I G + H + ++K S K + I ++ Y D +Q
Sbjct: 403 RWGHKAIAITDHGVVQAFTDAFHTMSDLK---GSYAKKGEKLDFKIIYGVEAYLVDDTKQ 459
Query: 116 IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVP- 173
I+ + + T +VFD+ETTGFS E +RIIEI + GE F T VNP+ +P
Sbjct: 460 IVTNPRGQSFNDTYVVFDLETTGFSAEVDRIIEIGAVKVCNGEIVDRFSTFVNPEIPIPF 519
Query: 174 --NAHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLIN 231
H I MV + P++E+++P L + + + VAHNA FD F+IN
Sbjct: 520 RIETLTH-INDQMVM--NAPKIEEILPEFLEFCEGA-------VMVAHNAE-FDTSFIIN 568
Query: 232 EFSRCSYEVPNNWLFMDTLTLARELM 257
+ + V +DT+ LA+ LM
Sbjct: 569 KAEKIGINVDTT--IIDTVLLAQFLM 592
>gi|227813558|ref|YP_002813567.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. CDC
684]
gi|227004983|gb|ACP14726.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. CDC 684]
Length = 315
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNPKR +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPKRPIPDRIMSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|163941216|ref|YP_001646100.1| DNA polymerase III subunit epsilon [Bacillus weihenstephanensis
KBAB4]
gi|163863413|gb|ABY44472.1| DNA polymerase III, epsilon subunit [Bacillus weihenstephanensis
KBAB4]
Length = 315
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ ++ + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPLFLAFLHTK-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNNV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|30263558|ref|NP_845935.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames]
gi|47528957|ref|YP_020306.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186408|ref|YP_029660.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne]
gi|65320888|ref|ZP_00393847.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
[Bacillus anthracis str. A2012]
gi|165871011|ref|ZP_02215662.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0488]
gi|167636474|ref|ZP_02394772.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0442]
gi|167640607|ref|ZP_02398869.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0193]
gi|170688408|ref|ZP_02879616.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0465]
gi|170708125|ref|ZP_02898572.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0389]
gi|177652488|ref|ZP_02934955.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0174]
gi|190565123|ref|ZP_03018044.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. Tsiankovskii-I]
gi|229603113|ref|YP_002867802.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A0248]
gi|254686178|ref|ZP_05150037.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
CNEVA-9066]
gi|254726056|ref|ZP_05187838.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A1055]
gi|254738651|ref|ZP_05196354.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Western
North America USA6153]
gi|254744791|ref|ZP_05202469.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Kruger
B]
gi|254752968|ref|ZP_05205004.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum]
gi|254759240|ref|ZP_05211266.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
Australia 94]
gi|386737364|ref|YP_006210545.1| DNA polymerase III subunit alpha [Bacillus anthracis str. H9401]
gi|421637204|ref|ZP_16077802.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. BF1]
gi|30258193|gb|AAP27421.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. Ames]
gi|47504105|gb|AAT32781.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. 'Ames Ancestor']
gi|49180335|gb|AAT55711.1| DNA polymerase III, epsilon subunit, putative [Bacillus anthracis
str. Sterne]
gi|164713222|gb|EDR18748.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0488]
gi|167511475|gb|EDR86859.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0193]
gi|167528133|gb|EDR90925.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0442]
gi|170126933|gb|EDS95813.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0389]
gi|170667578|gb|EDT18333.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0465]
gi|172082162|gb|EDT67229.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0174]
gi|190564440|gb|EDV18404.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. Tsiankovskii-I]
gi|229267521|gb|ACQ49158.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0248]
gi|384387216|gb|AFH84877.1| DNA polymerase III alpha subunit [Bacillus anthracis str. H9401]
gi|403396000|gb|EJY93238.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. BF1]
Length = 315
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNPKR +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPKRPIPDRIMSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|423558865|ref|ZP_17535167.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MC67]
gi|401190634|gb|EJQ97675.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MC67]
Length = 318
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGITNYRV- 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 73 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA+ MK ++ L+ L+ GI L S+H A D + + QR
Sbjct: 123 IDTVFLAKRYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQR 170
>gi|374292722|ref|YP_005039757.1| hypothetical protein AZOLI_2327 [Azospirillum lipoferum 4B]
gi|357424661|emb|CBS87540.1| conserved membrane protein of unknown function; DNA polymerase III
domain [Azospirillum lipoferum 4B]
Length = 726
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 28/181 (15%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLGGE---NSTFQTLVNPKRQVPNAHV--HGITTD 183
+VFD ETTG S + II+IA ++GG TF TLV+PKR +P V HGIT
Sbjct: 534 VVFDTETTGLSPSTGDEIIQIAAVRVVGGRILTGETFNTLVDPKRPIPPESVPFHGITDG 593
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFL--INEFSRCSYEVP 241
MV P ++ ++P +V + VAHNA +FD+ FL + +++ P
Sbjct: 594 MVAGK--PTIDAVLPQFRGFVSG-------AVMVAHNA-AFDLKFLKMKERAAGVAFDCP 643
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ L+R L+ + G + +L + E GI +V H A+ D + + R
Sbjct: 644 ----VLDTMLLSRMLLGNDGDH-----TLDGIAERLGIEVV-DRHTALGDSLVTAAVFLR 693
Query: 302 L 302
+
Sbjct: 694 M 694
>gi|423518237|ref|ZP_17494718.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA2-4]
gi|401161598|gb|EJQ68962.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA2-4]
Length = 315
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ ++ + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTK-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNNV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|307690728|ref|ZP_07633174.1| DNA polymerase III PolC [Clostridium cellulovorans 743B]
Length = 1439
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 92/191 (48%), Gaps = 25/191 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVP--NAHVHGITTDMVC 186
+VFDIETTGFS +N+RIIEI + GE F VNP++ +P + GI MV
Sbjct: 427 VVFDIETTGFSSQNDRIIEIGAVKVKNGEIIDEFSVFVNPQKDIPLEITELTGIDNYMV- 485
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D ++ +I +V + VAHNA +FD F+ + E N+
Sbjct: 486 -KDAKTIDIVIKEFYDFVDGS-------ILVAHNA-AFDTSFIKKNYLDNDLEF--NYPI 534
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
MDT+ L + L + +K L + +Y GI L+ + HRA+ D +++ + +L
Sbjct: 535 MDTIPLCKYLYPA-----LNKYKLNVICKYLGITLL-NHHRAVDDAKATAMVFLKAQEEL 588
Query: 307 K----LSLCDL 313
+ + L DL
Sbjct: 589 RSREIIKLSDL 599
>gi|302874658|ref|YP_003843291.1| DNA polymerase III subunit alpha [Clostridium cellulovorans 743B]
gi|302577515|gb|ADL51527.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
Length = 1443
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 92/191 (48%), Gaps = 25/191 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVP--NAHVHGITTDMVC 186
+VFDIETTGFS +N+RIIEI + GE F VNP++ +P + GI MV
Sbjct: 431 VVFDIETTGFSSQNDRIIEIGAVKVKNGEIIDEFSVFVNPQKDIPLEITELTGIDNYMV- 489
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D ++ +I +V + VAHNA +FD F+ + E N+
Sbjct: 490 -KDAKTIDIVIKEFYDFVDGS-------ILVAHNA-AFDTSFIKKNYLDNDLEF--NYPI 538
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
MDT+ L + L + +K L + +Y GI L+ + HRA+ D +++ + +L
Sbjct: 539 MDTIPLCKYLYPA-----LNKYKLNVICKYLGITLL-NHHRAVDDAKATAMVFLKAQEEL 592
Query: 307 K----LSLCDL 313
+ + L DL
Sbjct: 593 RSREIIKLSDL 603
>gi|210621010|ref|ZP_03292395.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275]
gi|210154994|gb|EEA86000.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275]
Length = 276
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 85/179 (47%), Gaps = 20/179 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVFD+ETTG E I EIA E F T VNPK+++ + GIT +MV
Sbjct: 97 IVFDLETTGLEAHKEAITEIAAIKFDYDEPVEYFHTYVNPKKKIREKITDLTGITNEMVA 156
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P +E ++P L ++ Y L ++HN SFD+ F+++ Y+ P N
Sbjct: 157 S--APPIEYVLPNFLKFIDK------YTL-ISHNV-SFDMSFILDPMYNLGYKKPGNKA- 205
Query: 247 MDTLTLARELMK--SGGSNLPSKVSLQALREYYGIPLVG---SAHRAMADVNCLSLILQ 300
+DTL LAR MK G L S L+ L+ G+PL +H A+ D + +
Sbjct: 206 IDTLALARRFMKDEDTGKRL-SSYKLEDLKYQLGLPLDVYDIKSHNALYDTKVAYFLYK 263
>gi|315122041|ref|YP_004062530.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495443|gb|ADR52042.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 244
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 20/173 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENS--TFQTLVNP--KRQVPNA-HVHGITTDM 184
I+FDIETTG ++N+RIIEI +LL + TFQ ++P K+ P A +HGIT +
Sbjct: 9 IIFDIETTGLDKKNDRIIEIGAVELLDYSKTGRTFQVFLSPDGKKVNPEALKLHGITDEF 68
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + P + + ++AHNA+ FDV F+ E R + + +
Sbjct: 69 L--RDKPFFSAIFPEFWDFFNDKNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 120
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLS 296
+DTL++AR S S+ L +L + YGI + S H A+ D + L+
Sbjct: 121 RIVDTLSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLA 167
>gi|315924481|ref|ZP_07920702.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
gi|315622185|gb|EFV02145.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
Length = 1442
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 86/186 (46%), Gaps = 21/186 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVC 186
+ FD+ETTG + IIEIA + TFQT VNP R +P + IT MV
Sbjct: 428 VFFDLETTGLYAGRDAIIEIAAVKIKNKHVLDTFQTFVNPHRPIPQKITELTSITDQMVA 487
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ E + L + + + AHNA SFD+ F+ R Y +PN +
Sbjct: 488 QGK--EEEAAVRAFLDFCDGK-------ILAAHNA-SFDMGFMSIALER--YGIPNTITY 535
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+DTL +AR L+ ++ +L+ L Y+ I + G HRA+ D C + I RL
Sbjct: 536 VDTLPMARTLIPD-----IARHNLKKLASYFKIDM-GHHHRAIDDSICSAKIFVRLMGLA 589
Query: 307 KLSLCD 312
+ CD
Sbjct: 590 EKQHCD 595
>gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040495|gb|ACT57291.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
asiaticus str. psy62]
Length = 245
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 20/173 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLL--GGENSTFQTLVNP--KRQVPNA-HVHGITTDM 184
IVFDIETTG +N+RIIEI +LL N TFQ + P ++ P A +HGIT +
Sbjct: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + + + ++AHNA+ FDV F+ E R + + +
Sbjct: 70 L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLS 296
+DTL++AR S S+ L +L + YGI + S H A+ D + LS
Sbjct: 122 RIIDTLSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
>gi|374368938|ref|ZP_09626979.1| DNA polymerase III, epsilon subunit [Cupriavidus basilensis OR16]
gi|373099526|gb|EHP40606.1| DNA polymerase III, epsilon subunit [Cupriavidus basilensis OR16]
Length = 217
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 86/183 (46%), Gaps = 21/183 (11%)
Query: 128 TAIVFDIETTGFS-RENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTD 183
T V D ETTG S R+ +R EIA L GE +Q+L+N R++P+ VH GIT D
Sbjct: 3 TVAVLDFETTGLSPRQGDRATEIAVILLRDGEIVDQYQSLMNAGRRIPSDVVHLTGITND 62
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ P ++ + +V G VAHNA FD F E + +P +
Sbjct: 63 MIAS--APAASTVMREVARFV-------GKHPVVAHNA-GFDRRFWQAELALLG--MPAD 110
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
F T+ ++R + ++ L L + +P G AHRAMAD S + QRL
Sbjct: 111 QAFACTMLVSRRVYPHAQNH-----RLSTLVDMLRLPKAGRAHRAMADAQMTSHLWQRLR 165
Query: 304 FDL 306
D+
Sbjct: 166 HDI 168
>gi|269123116|ref|YP_003305693.1| DNA polymerase III subunit alpha [Streptobacillus moniliformis DSM
12112]
gi|268314442|gb|ACZ00816.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
12112]
Length = 1465
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 21/176 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDMVC 186
+VFDIETTGFS N++IIEI L G+ F VNP+ +P V GI +MV
Sbjct: 405 VVFDIETTGFSPINDKIIEIGAVKLKNGKVLDRFSEFVNPQTIIPKKIVELTGINDNMVK 464
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D+ ++ ++P L +VK VAHNA+ FDV F+ + + E ++ +
Sbjct: 465 DSDI--IDKVMPRFLEFVKGTT-------LVAHNAK-FDVGFISKKCEDLNLET--DFSY 512
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL ++ L+ + +L L + + I L + HRA+ D N + + ++L
Sbjct: 513 IDTLEWSKILVDD-----VKRFNLDTLTKRFNIKL-ENHHRAVDDANATAELFKKL 562
>gi|419718105|ref|ZP_14245441.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lachnoanaerobaculum saburreum F0468]
gi|383305706|gb|EIC97055.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lachnoanaerobaculum saburreum F0468]
Length = 1483
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 105/224 (46%), Gaps = 25/224 (11%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D++++++ D IVFDIETTGFS +N+ I EI ++ GE F T VNPKR
Sbjct: 442 DLKELVSNPADKTLDDGFIVFDIETTGFSAKNDAITEIGAVKVVNGEIVDRFSTFVNPKR 501
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + I+ MV + P +E+++P L + + VAHNA FD F
Sbjct: 502 PIPFRIEELTHISDAMVV--NAPVIEEILPKFLEFCEDYT-------IVAHNA-GFDTGF 551
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ R + E N +DT+ +AR L+ ++ L + + I L G HRA
Sbjct: 552 IRENAKRINAEY--NPSIIDTVAMARLLLPD-----LNRFKLDTVCKALNISLEGH-HRA 603
Query: 289 MADVNCLSLI----LQRLTFDLKLSLCDLIERGFTPSDLINPKK 328
+ D + I ++RL L D+ G T +D++ K
Sbjct: 604 VNDAEATAEIWVEFIKRLKAKGINKLSDVASLGETNADIVKKTK 647
>gi|397171166|ref|ZP_10494575.1| DNA polymerase III, epsilon subunit [Alishewanella aestuarii B11]
gi|396087065|gb|EJI84666.1| DNA polymerase III, epsilon subunit [Alishewanella aestuarii B11]
Length = 749
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 25/176 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D+ETTG +R+IEI + GE TF TL+NP R +P+ + + GI+ MV
Sbjct: 585 VVLDVETTGGKAGTDRVIEIGAVKVQAGEVLDTFSTLLNPGRTIPSFISRLTGISNAMVA 644
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC--SYEVPNNW 244
D P D+ L +++ +FVAHNA+ FD F+ +EF+RC ++++P
Sbjct: 645 --DAPIFADIADKLAEFLRG-------AVFVAHNAK-FDYGFIRSEFARCDITFDMPQ-- 692
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
+ T+ R S SL L E + I L + HRA+AD S +L+
Sbjct: 693 --LCTVVNMRRYYPGLQS-----YSLGKLCEEFEIKL-NNHHRALADATATSELLK 740
>gi|305680841|ref|ZP_07403648.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Corynebacterium matruchotii ATCC 14266]
gi|305659046|gb|EFM48546.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Corynebacterium matruchotii ATCC 14266]
Length = 2479
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 90/183 (49%), Gaps = 25/183 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLG-GEN-STFQTLVNPKRQVPNAHVHGITT-DM 184
T V D+ETTGFS + RI+E+A L GEN + TL+NP R + N +HGIT D+
Sbjct: 2084 TYAVVDVETTGFSTAD-RIVELAIVVLDDDGENLYEWSTLINPMRDISNGAIHGITAKDV 2142
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN-N 243
P ++ D + LL G I FVAHNA FDV L +EF R ++
Sbjct: 2143 AVAPTFDQVADDVAALLE---------GKI-FVAHNA-IFDVRMLKSEFDRVGLKMAGLA 2191
Query: 244 WLFMDTLTLARELMKSGGSNLP-SKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL LA+ ++LP S SL + + GI AH A++D +L R
Sbjct: 2192 DGHIDTLRLAQ-------NSLPISSRSLDSCLAFMGI-TNEQAHSALSDARATGRLLTRF 2243
Query: 303 TFD 305
D
Sbjct: 2244 LLD 2246
>gi|433644693|ref|YP_007277260.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Mycobacterium smegmatis JS623]
gi|433301413|gb|AGB27230.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Mycobacterium smegmatis JS623]
Length = 193
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 86/193 (44%), Gaps = 28/193 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENS--TFQTLVNPKRQVPNAHVHGITTDMVC- 186
+V D+ET+GF R++ +A L TL+NP HVHG+T M+
Sbjct: 8 VVVDVETSGFDPTTARVLSVAALTLTPAATPEHALHTLLNPGVDPGPTHVHGLTAAMLAG 67
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+P + D + LLH G IL VAHNA +FD FL E RC ++P
Sbjct: 68 QPRYADIADQLAPLLH---------GRIL-VAHNA-AFDYAFLAAEARRCGADLP----V 112
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
D L EL LPS +SL AL ++GI H A+ D L+ IL R
Sbjct: 113 ADVLC-THELADRLDLGLPS-LSLAALAAHWGI-QQARPHDALDDARVLAAILPR----- 164
Query: 307 KLSLCDLIERGFT 319
+L +RG T
Sbjct: 165 --ALAVAADRGVT 175
>gi|423483220|ref|ZP_17459910.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6X1-2]
gi|401141993|gb|EJQ49543.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6X1-2]
Length = 315
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLAEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + QR
Sbjct: 120 IDTVFLAKKYMKYAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQR 167
>gi|332670685|ref|YP_004453693.1| DNA polymerase III subunit epsilon [Cellulomonas fimi ATCC 484]
gi|332339723|gb|AEE46306.1| DNA polymerase III, epsilon subunit [Cellulomonas fimi ATCC 484]
Length = 620
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 89/183 (48%), Gaps = 22/183 (12%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG + + I EI + GG+ FQTLV+P VP + GITT
Sbjct: 41 VTFVVVDLETTGGTPADCAITEIGAVKVRGGQVLGEFQTLVDPGGPVPPYIQVLTGITTS 100
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ PR+E ++P L + G + VAHNA FDV FL +R + P N
Sbjct: 101 MLVG--APRIETVLPSFLEF-------AGDAVLVAHNA-PFDVGFLKAAAARTGHPWPGN 150
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+ +DT+ LAR + + +L AL P HRA++D V+ L +L
Sbjct: 151 RV-LDTVRLARRAVTRDEAPNHKLSTLAALFHATVTP----NHRALSDARATVDVLHALL 205
Query: 300 QRL 302
RL
Sbjct: 206 GRL 208
>gi|315651645|ref|ZP_07904656.1| DNA polymerase III PolC [Lachnoanaerobaculum saburreum DSM 3986]
gi|315486099|gb|EFU76470.1| DNA polymerase III PolC [Lachnoanaerobaculum saburreum DSM 3986]
Length = 1483
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 105/224 (46%), Gaps = 25/224 (11%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D++++++ D IVFDIETTGFS +N+ I EI ++ GE F T VNPKR
Sbjct: 442 DLKELVSNPADKTLDDGFIVFDIETTGFSAKNDAITEIGAVKVVNGEIVDRFSTFVNPKR 501
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + I+ MV + P +E+++P L + + VAHNA FD F
Sbjct: 502 PIPFRIEELTHISDAMVV--NAPVIEEILPKFLDFCEDYT-------IVAHNA-GFDTGF 551
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ R + E N +DT+ +AR L+ ++ L + + I L G HRA
Sbjct: 552 IRENAKRINAEY--NPSIIDTVAMARLLLPD-----LNRFKLDTVCKALNISLEGH-HRA 603
Query: 289 MADVNCLSLI----LQRLTFDLKLSLCDLIERGFTPSDLINPKK 328
+ D + I ++RL L D+ G T +D++ K
Sbjct: 604 VNDAEATAEIWVEFIKRLKAKGINKLSDVASLGETNADIVKKTK 647
>gi|423385321|ref|ZP_17362577.1| DNA polymerase III polC-type [Bacillus cereus BAG1X1-2]
gi|423528321|ref|ZP_17504766.1| DNA polymerase III polC-type [Bacillus cereus HuB1-1]
gi|401635377|gb|EJS53132.1| DNA polymerase III polC-type [Bacillus cereus BAG1X1-2]
gi|402451984|gb|EJV83803.1| DNA polymerase III polC-type [Bacillus cereus HuB1-1]
Length = 1433
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 97/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ K +K G VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEVF-------KKFEKWMGDHTLVAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|423635620|ref|ZP_17611273.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD156]
gi|401276810|gb|EJR82755.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD156]
Length = 315
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ ++ + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPLFLAFLHTK-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|225021279|ref|ZP_03710471.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
33806]
gi|224946012|gb|EEG27221.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
33806]
Length = 2493
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 90/183 (49%), Gaps = 25/183 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLG-GEN-STFQTLVNPKRQVPNAHVHGITT-DM 184
T V D+ETTGFS + RI+E+A L GEN + TL+NP R + N +HGIT D+
Sbjct: 2098 TYAVVDVETTGFSTAD-RIVELAIVVLDDDGENLYEWSTLINPMRDISNGAIHGITAKDV 2156
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN-N 243
P ++ D + LL G I FVAHNA FDV L +EF R ++
Sbjct: 2157 AVAPTFDQVADDVAALLE---------GKI-FVAHNA-IFDVRMLKSEFDRVGLKMAGLA 2205
Query: 244 WLFMDTLTLARELMKSGGSNLP-SKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL LA+ ++LP S SL + + GI AH A++D +L R
Sbjct: 2206 DGHIDTLRLAQ-------NSLPISSRSLDSCLAFMGI-TNEQAHSALSDARATGRLLTRF 2257
Query: 303 TFD 305
D
Sbjct: 2258 LLD 2260
>gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325]
gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325]
Length = 1449
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 89/181 (49%), Gaps = 19/181 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLL-GGENSTFQTLVNPKRQVPN--AHVHGIT 181
K T +VFD+ETTG S E +R+IEIA + G E +F++ +NP+R + + IT
Sbjct: 425 KDATYVVFDVETTGLSAERDRLIEIAAVKVKNGSEIDSFESYINPRRPISELITRLTSIT 484
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
D V D P E+++ +++ + VAHNA+ FD+ FL F R +
Sbjct: 485 DDDV--KDAPFEEEVMTNFYNWLDEDD------ILVAHNAK-FDLGFLDKSFERLGLKNK 535
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
NN +DTL ++R K + L L + Y + LV HRA+ D + I +
Sbjct: 536 NN-ASIDTLFISRAENKEA-----KRHGLSNLAKLYKVRLV-QHHRAIYDTKATAEIFVK 588
Query: 302 L 302
+
Sbjct: 589 M 589
>gi|386773578|ref|ZP_10095956.1| hypothetical protein BparL_07347 [Brachybacterium paraconglomeratum
LC44]
Length = 554
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 93/194 (47%), Gaps = 21/194 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVHGIT--TD 183
T +V D+ETTG + I EI + GGE F+T V+P+R +P A++ +T +D
Sbjct: 19 ATLVVVDLETTGTDPAADAITEIGAVKVRGGEVLGEFRTFVDPERPIP-AYIASLTGISD 77
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
+ P + ++P+ L +V G VAHNAR FD+ FL + C+ E P
Sbjct: 78 ATVR-GAPSIRTVLPMFLDFV------GPEAALVAHNAR-FDIGFLRARAAECALEWPAP 129
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR + + + L L + G V HRA++D V+ L I+
Sbjct: 130 -TVLDTLALARTVFR---RDEVRDHKLSTLAAHVGA-AVTPDHRALSDARATVDVLHAII 184
Query: 300 QRLTFDLKLSLCDL 313
RL +L DL
Sbjct: 185 ARLGPTGASTLEDL 198
>gi|443491506|ref|YP_007369653.1| DNA polymerase III subunit [Mycobacterium liflandii 128FXT]
gi|442584003|gb|AGC63146.1| DNA polymerase III subunit [Mycobacterium liflandii 128FXT]
Length = 674
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 107/239 (44%), Gaps = 34/239 (14%)
Query: 112 DIEQIIAENKDLAKL--VTAIVFDIETTGF------SRENERIIEIAFQDLLGGEN-STF 162
D+ A D L T +V D+ETTG + + I EI + GG F
Sbjct: 38 DLTDPAAAQADDVSLRETTFVVVDLETTGGRATGTEASPPDAITEIGAVKVRGGVILGEF 97
Query: 163 QTLVNPKRQVPNAHVH--GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHN 220
TLV+P+R +P V GITT M+C D P ++ ++P+ +V G + VAHN
Sbjct: 98 ATLVDPQRSIPPQIVRLTGITTAMLC--DAPTIDSVLPMFFEFV-------GNSVLVAHN 148
Query: 221 ARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIP 280
A FD+ FL RC P + + T+ LAR ++ PS V L AL + +
Sbjct: 149 A-GFDIGFLRAAAGRCDIARPGSKVVC-TVRLARRVLSR--EEAPS-VRLAALARLFSV- 202
Query: 281 LVGSAHRAMAD----VNCLSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLV 335
HRA+ D V L +++R+ S +L R + P + P +++K L
Sbjct: 203 ATQPTHRALDDARATVEVLHALIERVGNQGVHSYAEL--RAYLPG--VTPAQRRKRVLA 257
>gi|379736876|ref|YP_005330382.1| putative exonuclease, RNase T and DNA polymerase III [Blastococcus
saxobsidens DD2]
gi|378784683|emb|CCG04352.1| Putative exonuclease, RNase T and DNA polymerase III [Blastococcus
saxobsidens DD2]
Length = 433
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 82/182 (45%), Gaps = 21/182 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIA--FQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDM 184
+T V D+ETTG S +R++EI D G + F+TLVNP R V +HGI+
Sbjct: 1 MTVAVVDVETTGLSPRTDRVVEIGVVLLDDRGEVEAEFETLVNPGRDVGPTGLHGISAGD 60
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P D+ L + R + VAHNA FD+ FL EF R +
Sbjct: 61 VV--DAPAFADVAQHLRSLLVGR-------VLVAHNAL-FDLRFLAREFGRAGLPTALSP 110
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS-LILQRLT 303
T+ LA SG SLQAL + IPLV H A+ D + L+L L
Sbjct: 111 SLC-TMRLAPLFFGSG------TRSLQALCGFLDIPLV-HGHAALHDARATAELMLAMLA 162
Query: 304 FD 305
D
Sbjct: 163 SD 164
>gi|375110632|ref|ZP_09756852.1| DNA polymerase III, epsilon subunit [Alishewanella jeotgali KCTC
22429]
gi|374569206|gb|EHR40369.1| DNA polymerase III, epsilon subunit [Alishewanella jeotgali KCTC
22429]
Length = 749
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 25/176 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D+ETTG +R+IEI + GE TF TL+NP R +P+ + + GI+ MV
Sbjct: 585 VVLDVETTGGKAGTDRVIEIGAVKVQAGEVLDTFSTLLNPGRTIPSFISRLTGISNAMVA 644
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC--SYEVPNNW 244
D P D+ L +++ +FVAHNA+ FD F+ +EF+RC ++++P
Sbjct: 645 --DAPTFADIADKLAEFLRG-------AVFVAHNAK-FDYGFIRSEFARCDITFDMPQ-- 692
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
+ T+ R S SL L E + I L + HRA+AD + +L+
Sbjct: 693 --LCTVVNMRRYYPGLQS-----YSLGKLCEEFEIKL-NNHHRALADATATAELLK 740
>gi|300856235|ref|YP_003781219.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
gi|300436350|gb|ADK16117.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
Length = 1449
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 29/184 (15%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVP--NAHVHGITTDM 184
T V D+ETTGFS E+I EI + G+ TF T VNP++ +P V IT DM
Sbjct: 425 TYCVLDLETTGFSPVTEKITEIGIMKIKDGKVIDTFSTFVNPEKPIPLRVVEVTNITDDM 484
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLIN--EFSRCSYEVPN 242
V + +E + P +L ++K + VAHNA FDV FL + + C +
Sbjct: 485 VRNAET--IEQVFPKMLDFIKDS-------VLVAHNAE-FDVGFLKHNAKILGCDF---- 530
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLI 298
++ ++DTL+LA+E+ + L + + GI V AHRA+ D V +++
Sbjct: 531 DFTYVDTLSLAQEVFPDFKT-----YKLGRIAKNLGIK-VEVAHRALDDVATTVKVFNVM 584
Query: 299 LQRL 302
L++L
Sbjct: 585 LEKL 588
>gi|410696584|gb|AFV75652.1| exonuclease, DNA polymerase III, epsilon subunit family [Thermus
oshimai JL-2]
Length = 627
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 28/167 (16%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGG---ENSTFQTLVNPKRQVPNA--HVHGITTDMV 185
FD+ETTG + +RII + LLG + TF+ L++P R +P A VHG+T +M+
Sbjct: 445 AFDLETTGLNPREDRIIALGAVHLLGRRVLKGETFEALLDPGRPIPKASTEVHGLTWEML 504
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
PR+E+++P + +++ + VAHN +FD+ FL + E
Sbjct: 505 K--GKPRLEEVLPAFMAFIEE-------TVLVAHNG-AFDMAFL----RQAGVE---KTP 547
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
+DTL L+ L + L+AL E +G+P++G H A+ D
Sbjct: 548 LVDTLLLSHLLFPDLEDH-----RLEALAERFGVPVLGR-HTALGDA 588
>gi|218904738|ref|YP_002452572.1| DNA polymerase III subunit epsilon [Bacillus cereus AH820]
gi|218538798|gb|ACK91196.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH820]
Length = 315
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNPKR +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPKRPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK + L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPN-----YKLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|296166059|ref|ZP_06848506.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898580|gb|EFG78139.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 648
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 101/223 (45%), Gaps = 32/223 (14%)
Query: 128 TAIVFDIETTGF------SRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH-- 178
T +V D+ETTG + I EI + GG F TLV+P+R +P V
Sbjct: 42 TFVVVDLETTGGRTKATGGNAPDAITEIGAVKVRGGVVLGEFATLVDPERSIPPQIVRLT 101
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GITT MV D PR++ ++P+ L + G + VAHNA FD+ FL +RC
Sbjct: 102 GITTAMVS--DAPRIDAVLPMFLEFA-------GDAVLVAHNA-GFDIGFLRAAAARCDI 151
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNC 294
P + T+ LAR ++ PS V L AL + + HRA+ D V
Sbjct: 152 AWPRPKVLC-TVRLARRVLSR--EEAPS-VRLGALARLFAV-AAQPTHRALDDARATVEV 206
Query: 295 LSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L +++R+ + DL R + P + P +++K L
Sbjct: 207 LHALIERVGNQGVHTYADL--RSYLPD--VTPTQRRKRVLAEG 245
>gi|325289205|ref|YP_004265386.1| DNA polymerase III subunit epsilon [Syntrophobotulus glycolicus DSM
8271]
gi|324964606|gb|ADY55385.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus
DSM 8271]
Length = 410
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 20/175 (11%)
Query: 131 VFDIETTG-FSRENERIIEIAFQDL--LGGENSTFQTLVNPKRQVPNAHVHGITTDMVCK 187
V D+ETTG F +++RIIE+A L G ++TLVNP R + H+H I+ MV
Sbjct: 6 VLDLETTGLFPEKHDRIIEVAIIILNSKGEIADQYETLVNPDRDLGPTHIHKISAGMV-- 63
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
+ P+ +D+ ++H + + + HN ++D F+ +EF R E+P
Sbjct: 64 SEAPKFKDIAGDIIHCLAGKH-------IIGHNI-AYDYRFIKHEFRRLKVEIPE----- 110
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
++ L + +LP + L+AL Y+ IPL H A D +++ Q L
Sbjct: 111 PQMSCTFHLTRKVEPDLPCR-KLEALCSYFDIPL-EHKHAAYFDCYATAVLFQTL 163
>gi|402313196|ref|ZP_10832117.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lachnospiraceae bacterium ICM7]
gi|400366956|gb|EJP19976.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lachnospiraceae bacterium ICM7]
Length = 1482
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 126/270 (46%), Gaps = 42/270 (15%)
Query: 81 HKLKNIKFEATSTTINVNKTEISKIQRIQH-----YDIEQIIAENKDLAKLVTA------ 129
+++KN +A + T + N ++ +++ Y +E + + DL +LVT
Sbjct: 397 NQVKNWGMDAIAITDHGNIQGFTEASHVKNPPKIIYGVEGYLVD--DLKELVTNPSDKTL 454
Query: 130 ----IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITT 182
IVFDIETTGFS +N+ I EI ++ GE F T VNP+R +P + I
Sbjct: 455 DDGFIVFDIETTGFSAKNDAITEIGAVKVVKGEIVDRFSTFVNPRRPIPFKIEELTHIND 514
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
MV + P +ED++P L + + YI+ VAHNA FD F+ R + E
Sbjct: 515 AMVM--NAPIIEDILPQFLDFCED------YII-VAHNA-GFDTGFIRENAKRINREY-- 562
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
N +DT+ +AR L+ ++ L + + I L G HRA+ D + I
Sbjct: 563 NPSIIDTVAMARLLLPD-----LNRFKLDTVCKALNISLEGH-HRAVNDAEATAQIWVEF 616
Query: 303 TFDLK---LS-LCDLIERGFTPSDLINPKK 328
LK LS L ++ G T +D++ K
Sbjct: 617 IRRLKNRGLSKLSEVASLGETNADIVKKTK 646
>gi|28210814|ref|NP_781758.1| DNA polymerase III subunit epsilon [Clostridium tetani E88]
gi|28203252|gb|AAO35695.1| DNA polymerase III alpha subunit [Clostridium tetani E88]
Length = 380
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 23/170 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D+ETTG ++IIEI G+ + TL+NPK +P ++ IT +MV
Sbjct: 85 VVIDLETTGLYPVTDKIIEITAIKYKSGQIVEKYNTLINPKINIPKRATEINNITNNMV- 143
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +ED++P LL ++K + P VAHNA SFD+ FL + + E+ N +
Sbjct: 144 -KDSPVIEDVLPELLKFIK--EYP-----LVAHNA-SFDIKFLNANLALINREIKN--VA 192
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
+DTL L+R + + LP+ L ++E+ I ++HRA+ D C++
Sbjct: 193 IDTLQLSRAMY----TFLPNH-KLTTIKEHLCIS-EDNSHRALPD--CIT 234
>gi|258541965|ref|YP_003187398.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO
3283-01]
gi|384041886|ref|YP_005480630.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-12]
gi|384050401|ref|YP_005477464.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-03]
gi|384053511|ref|YP_005486605.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-07]
gi|384056743|ref|YP_005489410.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-22]
gi|384059384|ref|YP_005498512.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-26]
gi|384062678|ref|YP_005483320.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-32]
gi|384118754|ref|YP_005501378.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256633043|dbj|BAH99018.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|256636100|dbj|BAI02069.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-03]
gi|256639155|dbj|BAI05117.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-07]
gi|256642209|dbj|BAI08164.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-22]
gi|256645264|dbj|BAI11212.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-26]
gi|256648319|dbj|BAI14260.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-32]
gi|256651372|dbj|BAI17306.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256654363|dbj|BAI20290.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-12]
Length = 224
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 95/202 (47%), Gaps = 28/202 (13%)
Query: 129 AIVFDIETTGFS-RENERIIEIAFQDLLG----GENSTFQTLVNPKRQVPN--AHVHGIT 181
+I+FD ETTG +R+IEIA +L+G G N F TL++P+R VP + VHG T
Sbjct: 4 SILFDTETTGLDPATGDRVIEIAALELVGDLPTGRN--FHTLIDPERDVPEEASRVHGFT 61
Query: 182 -TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEV 240
D+ KP + D L +V G +AHNAR FD F+ E R +
Sbjct: 62 RADLEGKPKFAEIAD---DFLAFV-------GDDPLIAHNAR-FDFGFMNAELKRAGKKT 110
Query: 241 PNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLIL 299
+DTL +ARE +P+ SL AL +G+ L + H A+ D L+ +
Sbjct: 111 LGLDRMVDTLDMARERF----PGMPN--SLDALCRRFGVDLSARTTHNALLDCKLLADVY 164
Query: 300 QRLTFDLKLSLCDLIERGFTPS 321
L + L + E G PS
Sbjct: 165 VELMGGRQHGLGLMAEDGQLPS 186
>gi|187935470|ref|YP_001885466.1| DNA polymerase III PolC [Clostridium botulinum B str. Eklund 17B]
gi|187723623|gb|ACD24844.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum B str. Eklund 17B]
Length = 1452
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 97/201 (48%), Gaps = 33/201 (16%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +VFD+ETTGFS N++IIEI + GE F VNP+R +P + I +M
Sbjct: 438 TFVVFDLETTGFSPVNDKIIEIGAVKIKSGEIIDEFSCFVNPQRDIPYKITQLTSIDNNM 497
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCS--YEVPN 242
V DV +E+++P + + + + VAHNA +FD F+ + +++P
Sbjct: 498 VKDADV--IENILPKFMEFCED-------TVIVAHNA-AFDTGFIKKNCRDLNIRFDIP- 546
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DT+TL R L KV L + ++ GI L + HRA+ D +
Sbjct: 547 ---ILDTVTLCRFLYPE-----LKKVKLNIVAKFLGISL-ENHHRAVDDA--------KA 589
Query: 303 TFDLKLSLCDLIERGFTPSDL 323
T D+ L + IE F +DL
Sbjct: 590 TADILLKSFEKIEEDFEINDL 610
>gi|349687196|ref|ZP_08898338.1| DNA polymerase III, epsilon subunit [Gluconacetobacter oboediens
174Bp2]
Length = 235
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 130 IVFDIETTGFSR-ENERIIEIAFQDLLGG--ENSTFQTLVNPKRQVPN--AHVHGIT-TD 183
I+FD ETTG + +R+IEIA +L+G +F L++P+R VP + VHG T D
Sbjct: 14 ILFDTETTGLDPLKGDRVIEIAALELVGDLPTGRSFHVLIDPERDVPEEASRVHGFTRAD 73
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
+ KP + ++ P L +V G +AHNAR FD F+ E SR +
Sbjct: 74 LEGKP---KFAEIAPDFLEFV-------GNDPLIAHNAR-FDFGFMNAELSRARLPELDM 122
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQRL 302
+DTL +ARE +P+ SL AL + I L + H A+ D L+ + L
Sbjct: 123 GRMVDTLDMARERFP----GMPN--SLDALCRRFSIDLSERTTHNALLDCKLLAAVYLEL 176
Query: 303 T 303
T
Sbjct: 177 T 177
>gi|421850223|ref|ZP_16283188.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus NBRC 101655]
gi|421851681|ref|ZP_16284374.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|371458949|dbj|GAB28391.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus NBRC 101655]
gi|371480184|dbj|GAB29577.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 224
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 95/202 (47%), Gaps = 28/202 (13%)
Query: 129 AIVFDIETTGFS-RENERIIEIAFQDLLG----GENSTFQTLVNPKRQVPN--AHVHGIT 181
+I+FD ETTG +R+IEIA +L+G G N F TL++P+R VP + VHG T
Sbjct: 4 SILFDTETTGLDPATGDRVIEIAALELVGDLPTGRN--FHTLIDPERDVPEEASRVHGFT 61
Query: 182 -TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEV 240
D+ KP + D L +V G +AHNAR FD F+ E R +
Sbjct: 62 RADLEGKPKFAEIAD---DFLAFV-------GDDPLIAHNAR-FDFGFMNAELKRAGKKT 110
Query: 241 PNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLIL 299
+DTL +ARE +P+ SL AL +G+ L + H A+ D L+ +
Sbjct: 111 LGLDRMVDTLDMARERF----PGMPN--SLDALCRRFGVDLSARTTHNALLDCKLLADVY 164
Query: 300 QRLTFDLKLSLCDLIERGFTPS 321
L + L + E G PS
Sbjct: 165 VELMGGRQHGLGLMAEDGQLPS 186
>gi|404482332|ref|ZP_11017559.1| DNA polymerase III, alpha subunit, Gram-positive type
[Clostridiales bacterium OBRC5-5]
gi|404344493|gb|EJZ70850.1| DNA polymerase III, alpha subunit, Gram-positive type
[Clostridiales bacterium OBRC5-5]
Length = 1482
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 126/270 (46%), Gaps = 42/270 (15%)
Query: 81 HKLKNIKFEATSTTINVNKTEISKIQRIQH-----YDIEQIIAENKDLAKLVTA------ 129
++ KN +A + T + N ++ +++ Y +E + + DL +LVT
Sbjct: 397 NQAKNWGMDAIAITDHGNIQGFTEASHVKNPPKIIYGVEGYLVD--DLKELVTNPMDKTL 454
Query: 130 ----IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITT 182
IVFDIETTGFS +N+ I EI ++ GE F T VNP+R +P + I+
Sbjct: 455 DDGFIVFDIETTGFSAKNDAITEIGAVKVVKGEIVDRFSTFVNPRRPIPFKIEELTHISD 514
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
MV + P +ED++P L + + YI+ VAHNA FD F+ R + E
Sbjct: 515 AMVM--NAPVIEDILPEFLDFCED------YII-VAHNA-GFDTGFIRENAKRINREY-- 562
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLI---- 298
N +DT+ +AR L+ ++ L + + I L G HRA+ D + I
Sbjct: 563 NPSIIDTVAMARLLLPD-----LNRFKLDTVCKALNISLEGH-HRAVNDAEATAQIWVEF 616
Query: 299 LQRLTFDLKLSLCDLIERGFTPSDLINPKK 328
++RL L ++ G T +D++ K
Sbjct: 617 IKRLKSRGLSKLSEVASLGETNADIVKKTK 646
>gi|384565060|ref|ZP_10012164.1| exonuclease, DNA polymerase III, epsilon subunit family, partial
[Saccharomonospora glauca K62]
gi|384520914|gb|EIE98109.1| exonuclease, DNA polymerase III, epsilon subunit family, partial
[Saccharomonospora glauca K62]
Length = 462
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 105/218 (48%), Gaps = 24/218 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTD 183
VT +V D+ETTG S + I EI + GGE F TLV+P +P V GITT
Sbjct: 15 VTFVVVDLETTGGSPDGGNITEIGAVKVRGGEVLGEFSTLVDPGVPIPPQIVALTGITTA 74
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV PR+E ++P L + G +L VAHNA FDV FL ++ P
Sbjct: 75 MVSS--APRIEQVLPAFLEFAD------GAVL-VAHNA-GFDVSFLKAACRVHGFDWPKP 124
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+ TL LAR +++ S L AL +G + HRA+ D V+ L +L
Sbjct: 125 TVVC-TLKLARRVLRRESRERQS-YRLSALAPLFGARTTPN-HRALDDAKATVDVLHGLL 181
Query: 300 QRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
+RL SL +L++ + P + P +++K +L +
Sbjct: 182 ERLGPLGVQSLEELLD--YLPD--VTPAQRRKRELAEH 215
>gi|425736858|ref|ZP_18855134.1| DNA polymerase III PolC [Staphylococcus massiliensis S46]
gi|425483330|gb|EKU50482.1| DNA polymerase III PolC [Staphylococcus massiliensis S46]
Length = 1438
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 20/184 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTD 183
T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT D
Sbjct: 420 ATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHEKLSETIINLTHITDD 479
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ D P +++++ +V G +F+AHNA SFD+ F+ + R + P++
Sbjct: 480 ML--KDAPEIDEVLTEFKAWV-------GDSIFIAHNA-SFDMGFIDTGYERLGFG-PSS 528
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+DTL L+R + G K L L + YG+ L HRA+ D + I ++
Sbjct: 529 NAVIDTLELSRTVNTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIKML 582
Query: 304 FDLK 307
LK
Sbjct: 583 KQLK 586
>gi|430750274|ref|YP_007213182.1| DNA polymerase III subunit alpha [Thermobacillus composti KWC4]
gi|430734239|gb|AGA58184.1| DNA polymerase III, alpha chain [Thermobacillus composti KWC4]
Length = 1435
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 88/182 (48%), Gaps = 22/182 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTG S N +IIE+A + G+ F+T +NP +P + IT DMV
Sbjct: 420 VVFDIETTGLSILNSKIIELAGVKMRDGKVTGKFETFINPHEPIPYNIQQLTNITDDMV- 478
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY-EVPNNWL 245
D P +E + + +V G + VAHNAR FD+ F+ E+PN L
Sbjct: 479 -KDAPELEPKLREFVEFV-------GDAVLVAHNAR-FDIGFIQANCKAIGLPELPNPVL 529
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
DTL +AR L + ++ L L E Y + L + HRA+ D L IL L D
Sbjct: 530 --DTLEMARMLHPTLKNH-----RLNTLAEKYKVSL-ENHHRAVDDAAALGGILFGLIAD 581
Query: 306 LK 307
K
Sbjct: 582 AK 583
>gi|403046809|ref|ZP_10902278.1| DNA polymerase III PolC [Staphylococcus sp. OJ82]
gi|402763505|gb|EJX17598.1| DNA polymerase III PolC [Staphylococcus sp. OJ82]
Length = 1438
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 21/186 (11%)
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH 178
++DL K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ + ++
Sbjct: 414 DRDL-KTATYVVFDVETTGLSNQYDKIIELAAVKVKDGEIIDKFERFSNPHERLSDVIIN 472
Query: 179 --GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC 236
IT DM+ D P +E+++ +V G +FVAHNA SFD+ F+ +
Sbjct: 473 LTHITDDMLV--DAPEIEEVLTEFKAWV-------GDAIFVAHNA-SFDMGFIDTGYEHV 522
Query: 237 SYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
N + +DTL L+R + G K L L + YG+ L HRA+ D +
Sbjct: 523 GIGASTNAV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATA 575
Query: 297 LILQRL 302
+ ++
Sbjct: 576 YMFIKM 581
>gi|392971867|ref|ZP_10337259.1| DNA polymerase III polC-type [Staphylococcus equorum subsp. equorum
Mu2]
gi|392509580|emb|CCI60549.1| DNA polymerase III polC-type [Staphylococcus equorum subsp. equorum
Mu2]
Length = 1438
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 21/186 (11%)
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH 178
++DL K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ + ++
Sbjct: 414 DRDL-KTATYVVFDVETTGLSNQYDKIIELAAVKVKDGEIIDKFERFSNPHERLSDVIIN 472
Query: 179 --GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC 236
IT DM+ D P +E+++ +V G +FVAHNA SFD+ F+ +
Sbjct: 473 LTHITDDMLV--DAPEIEEVLTEFKAWV-------GDAIFVAHNA-SFDMGFIDTGYEHV 522
Query: 237 SYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
N + +DTL L+R + G K L L + YG+ L HRA+ D +
Sbjct: 523 GIGASTNAV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATA 575
Query: 297 LILQRL 302
+ ++
Sbjct: 576 YMFIKM 581
>gi|238924126|ref|YP_002937642.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
gi|238875801|gb|ACR75508.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
Length = 1510
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 28/209 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS E +IIEI ++GGE + T +NP+ +P + I DMV
Sbjct: 481 VVFDIETTGFSPEKNKIIEIGAVKVIGGEIVDRYSTFINPEVPIPFRIEELTSIRDDMVI 540
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P ++ ++P + + K + VAHNA FD+ F+ + E N
Sbjct: 541 TS--PTVDVILPQFMEFCKD-------CIMVAHNA-DFDMSFIKRNCALLGMEC--NPTI 588
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+DT+ LAR L+ ++ L + + I L HRA+ D C + I + L
Sbjct: 589 VDTVALARVLLPQ-----LNRFKLDTVAKALNISL-DHHHRAVDDAACTAEIFVKFIEKL 642
Query: 307 KLSLCDLIERGFTPSDLINPKKKKKSKLV 335
K +RG + D +N K +++
Sbjct: 643 K-------DRGISSLDEVNALAKSSVEMI 664
>gi|344996710|ref|YP_004799053.1| DNA polymerase III polC-type [Caldicellulosiruptor lactoaceticus
6A]
gi|343964929|gb|AEM74076.1| DNA polymerase III polC-type [Caldicellulosiruptor lactoaceticus
6A]
Length = 1402
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 93/183 (50%), Gaps = 21/183 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +V DIETTGF + +RIIEI + G+ F T V+P+ ++P + + GI DM
Sbjct: 389 TFVVVDIETTGFDSQRDRIIEIGAVKIENGQITDRFSTFVDPEGKIPVRISELTGIYQDM 448
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V K P++ D I ++ + G +L VAHNA+ FD+ FL + C + ++
Sbjct: 449 VDK--APKLIDAI------LEFERFASGSVL-VAHNAQ-FDIGFLKKAYQECG--IIFDY 496
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
++DTL L+R L+ S +KV+ E+ + L HRA +D + I L
Sbjct: 497 TYIDTLELSRRLLTDLSSYKLNKVA-----EFLNVEL-RHHHRADSDAETTAGIFISLLE 550
Query: 305 DLK 307
LK
Sbjct: 551 RLK 553
>gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus
carnosus subsp. carnosus TM300]
Length = 1437
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 20/183 (10%)
Query: 123 LAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHG 179
+ K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ + ++
Sbjct: 416 ILKDATYVVFDVETTGLSNQYDKIIELAAVKVHDGEIIDKFERFSNPHERLSDTIKNLTH 475
Query: 180 ITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
I+ DM+ D P ++D++ +V G +FVAHNA SFD+ F+ + R
Sbjct: 476 ISDDMLV--DAPEIDDVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERAGLG 525
Query: 240 VPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
N + +DTL L+R + G K L L + YG+ L HRA+ D + I
Sbjct: 526 NYTNGV-IDTLELSRTINTEFG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIF 578
Query: 300 QRL 302
++
Sbjct: 579 IKM 581
>gi|403378766|ref|ZP_10920823.1| protein PolC [Paenibacillus sp. JC66]
Length = 1443
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 112/254 (44%), Gaps = 39/254 (15%)
Query: 61 RWSRRRITTGTEGSKKTI-----QSHKLKNIKFEATSTTINVNKTEISKIQRIQHYDIEQ 115
+W + I G + SHK ++IK NV +I + Q
Sbjct: 361 KWGHKAIAITDHGGVQAFPEANHASHKFEDIKI-IYGLEANVVNDQIPVVYAPQ------ 413
Query: 116 IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN 174
+ LA T +VFDIETTG S +IIEIA + GE F VNP ++P
Sbjct: 414 ----PRGLAD-ATYVVFDIETTGLSVMENKIIEIAGVKMKNGEEIERFTRFVNPHERIPY 468
Query: 175 --AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINE 232
+ IT DMV P +ED++P + +V G + VAHNA SFD+ F+ ++
Sbjct: 469 HITQLTNITDDMVV--GAPELEDVLPEFVEFV-------GDAVLVAHNA-SFDMGFIQHK 518
Query: 233 FSRCSY-EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
+ E+ N L DTL +AR L + ++ L L + + + L + HRA+ D
Sbjct: 519 LKTIGHAELTNPAL--DTLEMARLLYPAMKNH-----RLNTLADKFKVSL-ENHHRAIDD 570
Query: 292 VNCLSLILQRLTFD 305
L IL + D
Sbjct: 571 SIALGGILFHMIKD 584
>gi|228986699|ref|ZP_04146829.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773030|gb|EEM21466.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 315
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|229031267|ref|ZP_04187273.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
gi|228730025|gb|EEL80999.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
Length = 315
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPQNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|449105181|ref|ZP_21741886.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola ASLM]
gi|451969487|ref|ZP_21922716.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola US-Trep]
gi|448967168|gb|EMB47809.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola ASLM]
gi|451701584|gb|EMD56045.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola US-Trep]
Length = 217
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 25/215 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQDL-LGGENSTFQTLVNPKRQVP--NAHVHGITTDMVCK 187
FD ETTG + ER++EI + G + + L++P++ +P V+ IT +M+
Sbjct: 18 AFDTETTGTEAKAERVVEIGCVKFDIRGVIARYNVLIDPEKPMPPEAGKVNQITDEMLAG 77
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
P+ +++P L ++++ + VAHNA SFD+ F+ E RC N +F
Sbjct: 78 Q--PKFAEVLPDFLDFIRN-------TVLVAHNA-SFDINFINCELERCGKTKLTNKVF- 126
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN-CLSLILQRLT--F 304
DTLT ARE + S +LQ L +G+ V +AHRA D C+ L+ F
Sbjct: 127 DTLTFARETLPGLQS-----YALQNLATQFGVQAV-NAHRAEDDARVCMEFFKIALSHFF 180
Query: 305 DLKLSLCDLIERGFTPSDLINPK--KKKKSKLVSN 337
+ + D ++ S+ ++ K + KLV N
Sbjct: 181 EKNKDMLDYYKKDVDISEYLSTKDPETDGGKLVQN 215
>gi|399546332|ref|YP_006559640.1| Excinuclease cho [Marinobacter sp. BSs20148]
gi|399161664|gb|AFP32227.1| Excinuclease cho [Marinobacter sp. BSs20148]
Length = 483
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 98/207 (47%), Gaps = 26/207 (12%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGIT 181
K T D+ETTG S +RI EI Q GE +QTLVNPK ++ + GI+
Sbjct: 9 KTTTFAFLDLETTGGSAATDRITEIGIQFWRAGECVDQWQTLVNPKTRISPFIEQLTGIS 68
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
MV D P ED+ L Q+ G ++FVAHNAR FD F+ EF R
Sbjct: 69 NAMVA--DAPLFEDIADEL------EQRLDG-VVFVAHNAR-FDYGFVKGEFRRLGRMFV 118
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL-----S 296
L T+ L+R L + ++ AL E +G+ V HRAM DV +
Sbjct: 119 AKVLC--TVKLSRRLYPEF-----RRHNMDALIERHGLQQV-QRHRAMGDVAAMLGFFEH 170
Query: 297 LILQRLTFDLKLSLCDLIERGFTPSDL 323
++ Q+ L+ ++ +L++R PS L
Sbjct: 171 VLAQQGEDTLETAIGELLQRPSIPSHL 197
>gi|386346969|ref|YP_006045218.1| DNA polymerase III subunit epsilon [Spirochaeta thermophila DSM
6578]
gi|339411936|gb|AEJ61501.1| DNA polymerase III, epsilon subunit [Spirochaeta thermophila DSM
6578]
Length = 198
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 20/166 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+ FD+ETTG ++EIA GGE + F LV P +P +HGI V
Sbjct: 22 VAFDLETTGLDPVRHSVVEIACVKFQGGEPRAFFSLLVKPPHPIPAEVTKIHGIGDQDV- 80
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ P + ++P+L +V G L VAHNA FD+ FL E++RC P +
Sbjct: 81 -EEAPPLPSVLPMLESFV-------GTHLLVAHNA-PFDLSFLRIEYARCGRPYP-GFRA 130
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
+DT LAR ++ G + SL +L IPL HRA++D
Sbjct: 131 IDTRLLARSVLPHLG-----RYSLASLTRALDIPL-QQHHRALSDA 170
>gi|403719196|ref|ZP_10943650.1| putative exonuclease [Kineosphaera limosa NBRC 100340]
gi|403208110|dbj|GAB98333.1| putative exonuclease [Kineosphaera limosa NBRC 100340]
Length = 459
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 87/185 (47%), Gaps = 22/185 (11%)
Query: 131 VFDIETTGFS-RENERIIEIAFQDLLGGENST---FQTLVNPKRQVPNAHVHGITTDMVC 186
+ D ETTG S R +R++E+A L+ G T F TL+NP R +HGI+ D V
Sbjct: 1 MIDFETTGLSPRGGDRVVEVAIA-LVDGNGQTQDEFATLINPGRDTGPVFIHGISNDAVR 59
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ P +++P LL ++ + VAHNA +F+ FL +EF R
Sbjct: 60 --NAPTFAEIVPELLARLEG-------AVIVAHNA-TFEEAFLASEFRRAGVHPTAPLPA 109
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+ TL LA+ M + P+ L L Y IPLV H A+ D+ S +L L ++
Sbjct: 110 LCTLWLAQRTMPT-----PNH-RLGTLCRYAQIPLV-DKHAALGDMRATSALLPLLLHEV 162
Query: 307 KLSLC 311
L
Sbjct: 163 SQPLV 167
>gi|423390188|ref|ZP_17367414.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1X1-3]
gi|401640566|gb|EJS58297.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1X1-3]
Length = 315
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 22/172 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +PN + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPERPIPNRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD-VNCLSL 297
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + C ++
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAV 164
>gi|423453105|ref|ZP_17429958.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5X1-1]
gi|401138785|gb|EJQ46350.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5X1-1]
Length = 315
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDIRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|332298225|ref|YP_004440147.1| DNA polymerase III subunit epsilon [Treponema brennaborense DSM
12168]
gi|332181328|gb|AEE17016.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
12168]
Length = 186
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 23/177 (12%)
Query: 131 VFDIETTGFSRENERIIEI-AFQDLLGGENSTFQTLVNPKRQVP--NAHVHGITTDMVCK 187
FD ETTG E ER+IEI A + G + + L+NP + +P + ++ IT DMV
Sbjct: 25 AFDTETTGLKPEYERLIEIGAIRFDKNGIIARYDILINPGKPIPPGASAINNITDDMV-- 82
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE-VPNNWLF 246
+ P +E ++P L +V+ + VAHNA FD+ F+ E R + + NN
Sbjct: 83 RNCPLIESVLPDFLTFVRDS-------VLVAHNA-GFDLSFVNKELERSGFNPLKNNA-- 132
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN-CLSLILQRL 302
DT+ LAR LP+ LQ+L Y+GI V +AHRA D C+ + L+ L
Sbjct: 133 ADTVHLARSRFPQ----LPNH-KLQSLAAYFGID-VRNAHRAEDDARVCMEVFLRCL 183
>gi|118478852|ref|YP_896003.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al
Hakam]
gi|196038559|ref|ZP_03105868.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
NVH0597-99]
gi|196044683|ref|ZP_03111918.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
03BB108]
gi|225865592|ref|YP_002750970.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
03BB102]
gi|229092581|ref|ZP_04223732.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
gi|229185845|ref|ZP_04313018.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
gi|376267505|ref|YP_005120217.1| DNA polymerase III subunit alpha [Bacillus cereus F837/76]
gi|118418077|gb|ABK86496.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
Hakam]
gi|196024718|gb|EDX63390.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
03BB108]
gi|196030967|gb|EDX69565.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
NVH0597-99]
gi|225789766|gb|ACO29983.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
03BB102]
gi|228597557|gb|EEK55204.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
gi|228690734|gb|EEL44510.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
gi|364513305|gb|AEW56704.1| DNA polymerase III alpha subunit [Bacillus cereus F837/76]
Length = 315
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPQNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVLLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
australiense]
gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
australiense]
Length = 1530
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 32/228 (14%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNA--HVHGIT 181
K T +VFD+ETTGFS ++IIEIA + G+ FQ L+NP+ ++ ++ IT
Sbjct: 446 KEATYVVFDLETTGFSSTKDKIIEIAGVKIKHGKKIQEFQALINPQEKLSQTIINITNIT 505
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFL---INEFSRCSY 238
DM+ + ++ ++P L+++++ + VAHNA +FD+ FL I E
Sbjct: 506 DDMLEGKNT--IDQVLPDFLNFIEN-------CILVAHNA-TFDITFLKEKIKELGIAYK 555
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLI 298
P +DT+TL++ S SL+ L + + + HRA++D N + +
Sbjct: 556 PQP----VIDTMTLSQRFF----SEFLKYFSLKRLATVFKVKM-EEHHRALSDANTTAQV 606
Query: 299 LQRLTFDLKLSLCD----LIERGFTPSDLINPKKKKK---SKLVSNQE 339
++ L + + LI F D I+PK ++ + LV+NQ+
Sbjct: 607 FIKMIDQLSDASKNDKNVLITNFFDLKDPIDPKYERSYHINILVANQK 654
>gi|329114274|ref|ZP_08243036.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001]
gi|326696350|gb|EGE48029.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001]
Length = 224
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 93/200 (46%), Gaps = 24/200 (12%)
Query: 129 AIVFDIETTGFS-RENERIIEIAFQDLLGG--ENSTFQTLVNPKRQVPN--AHVHGIT-T 182
+I+FD ETTG +R+IEIA +L+G TF L++P+R VP + VHG T
Sbjct: 4 SILFDTETTGLDPATGDRVIEIAALELVGDLPTGRTFHKLIDPERDVPEEASRVHGFTRA 63
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
D+ KP + D L +V G +AHNAR FD F+ E R +
Sbjct: 64 DLEGKPKFAEVAD---DFLAFV-------GDDPLIAHNAR-FDFGFMNAELKRAGKKTLG 112
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQR 301
+DTL +ARE +P+ SL AL +G+ L + H A+ D L+ +
Sbjct: 113 LDRMVDTLDMARERF----PGMPN--SLDALCRRFGVDLSARTTHNALLDCKLLADVYVE 166
Query: 302 LTFDLKLSLCDLIERGFTPS 321
L + L + E G PS
Sbjct: 167 LMGGRQHGLGLMAEDGQLPS 186
>gi|298244280|ref|ZP_06968086.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
44963]
gi|297551761|gb|EFH85626.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
44963]
Length = 684
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTD 183
V +V D ETTG +R+IE+A + GE TFQ+LV+P+R++P V GI+ +
Sbjct: 99 VEFVVVDTETTGLRPGPDRVIEVAGVRMRNGEILDTFQSLVHPERRIPPFIVRFTGISPE 158
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ D P+ D++P L +++ V HN SFDV FL +E P
Sbjct: 159 MLA--DAPKARDIMPDFLRFIEG-------ATLVGHNL-SFDVNFLTHEAQLLGLPFPVE 208
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
L DT+ L+R L+ + L + +Y I + HRA+ D + + RL
Sbjct: 209 GL--DTILLSRRLLPG-----LKRFKLDMVAQYLQIQ-THNRHRALGDAQVTADVFARL 259
>gi|423395881|ref|ZP_17373082.1| DNA polymerase III polC-type [Bacillus cereus BAG2X1-1]
gi|423406757|ref|ZP_17383906.1| DNA polymerase III polC-type [Bacillus cereus BAG2X1-3]
gi|401653623|gb|EJS71167.1| DNA polymerase III polC-type [Bacillus cereus BAG2X1-1]
gi|401660047|gb|EJS77530.1| DNA polymerase III polC-type [Bacillus cereus BAG2X1-3]
Length = 970
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGIEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|331085480|ref|ZP_08334565.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330407718|gb|EGG87216.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 1492
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 92/201 (45%), Gaps = 28/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTDM 184
T +VFDIETTGFS +RIIEI + G F T VNP+ +P + IT DM
Sbjct: 462 TFVVFDIETTGFSAAEDRIIEIGAVKITDGAIVDRFSTFVNPEVPIPFEIQQLTHITDDM 521
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V + P++E+ +P L +V G VAHNA FDV F+ R +
Sbjct: 522 VL--EAPKIEEALPAFLDFV-------GESALVAHNA-GFDVGFIEQNCVRLGRS--RTF 569
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DT+ LAR L+ + SK L + + I L + HRA+ D + I +
Sbjct: 570 TSVDTVGLARVLLPT-----LSKYKLNIVAKALNISL-ENHHRAVDDAAATAEIYVKFIE 623
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
LK ERG T +N
Sbjct: 624 MLK-------ERGMTTLKEVN 637
>gi|384187620|ref|YP_005573516.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410675939|ref|YP_006928310.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
gi|452199996|ref|YP_007480077.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|326941329|gb|AEA17225.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409175068|gb|AFV19373.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
gi|452105389|gb|AGG02329.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 315
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPTNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A+ D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNALDDCITCAAVYQK 167
>gi|392545120|ref|ZP_10292257.1| DNA polymerase III subunit epsilon [Pseudoalteromonas rubra ATCC
29570]
Length = 726
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 28/188 (14%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
DI+Q+ + +A +V D+ETTG +E +RI EIA ++ G+ +Q+LVNP R
Sbjct: 542 DIQQVCWQ---IAPQQAYVVIDVETTGGKKEFDRITEIAMVKVVDGQVVDQWQSLVNPTR 598
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
++P + GI+ +MV + P DL + +++ +FVAHN +FD+ F
Sbjct: 599 RIPKYITELTGISNEMVA--NAPYFSDLAKQVYDFMQD-------AIFVAHNV-NFDMGF 648
Query: 229 LINEFSRC--SYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAH 286
+ EF+R S++ P + T+ AR+ + S +KV + GI L H
Sbjct: 649 IKAEFARLEQSFQKPK----LCTVQQARKWLPGLKSYALNKVCAE-----LGISLT-QHH 698
Query: 287 RAMADVNC 294
RAMAD
Sbjct: 699 RAMADAQA 706
>gi|330994285|ref|ZP_08318213.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1]
gi|329758752|gb|EGG75268.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1]
Length = 226
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 95/197 (48%), Gaps = 28/197 (14%)
Query: 130 IVFDIETTGFSR-ENERIIEIAFQDLLG----GENSTFQTLVNPKRQVPN--AHVHGIT- 181
I+FD ETTG + +R+IEIA +L+G G N F L++P+R VP + VHG T
Sbjct: 5 ILFDTETTGLDPLKGDRVIEIAALELVGDLPTGRN--FHVLIDPERDVPEEASRVHGFTR 62
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
D+ KP + ++ L +V G +AHNAR FD FL E +R V
Sbjct: 63 ADLEGKP---KFAEVASGFLEFV-------GDDPLIAHNAR-FDFGFLNAELARAGQPVL 111
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQ 300
+ +DTL +ARE +P+ SL AL + I L + H A+ D L+ +
Sbjct: 112 DMGRMVDTLDMARERFP----GMPN--SLDALCRRFSIDLSERTTHNALLDCRLLAAVYL 165
Query: 301 RLTFDLKLSLCDLIERG 317
LT + L +E G
Sbjct: 166 ELTGGRQRGLSLAVEDG 182
>gi|384181423|ref|YP_005567185.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324327507|gb|ADY22767.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 315
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPQNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|307718875|ref|YP_003874407.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
6192]
gi|306532600|gb|ADN02134.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
6192]
Length = 198
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 20/166 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+ FD+ETTG ++EIA GGE + F LV P +P +HGI V
Sbjct: 22 VTFDLETTGLDPVRHSVVEIACVKFQGGEPRAFFSLLVKPPHPIPAEVTKIHGIGDQDV- 80
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ P + ++P+L +V G L VAHNA FD+ FL E++RC P +
Sbjct: 81 -EEAPPLPSVLPMLESFV-------GTHLLVAHNA-PFDLSFLRMEYARCGRPYP-GFRA 130
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
+DT LAR ++ G + SL +L IPL HRA++D
Sbjct: 131 IDTRLLARSVLPHLG-----RYSLASLTRALDIPL-QHHHRALSDA 170
>gi|423418508|ref|ZP_17395597.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3X2-1]
gi|401105114|gb|EJQ13081.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3X2-1]
Length = 315
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 22/172 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +PN + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPERPIPNRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD-VNCLSL 297
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + C ++
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAV 164
>gi|170698522|ref|ZP_02889593.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
IOP40-10]
gi|170136606|gb|EDT04863.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
IOP40-10]
Length = 375
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 20/175 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG S RI EI ++ ST+ TLVNP + +P + GI+ +MV
Sbjct: 16 VFVDLETTGGSSAEHRITEIGVVEIGPLGVSTWTTLVNPGQAIPPFIQQLTGISDEMV-- 73
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P L P L+ + + LFVAHNA SFD FL EF R + N +
Sbjct: 74 RDAPSFASLAPALVERLDGK-------LFVAHNA-SFDRGFLRAEFERAG--IAFNPDVL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
T+ L+R L ++ L AL E +G+ + + HRA+AD + L ++L
Sbjct: 124 CTVRLSRALFPR-----EARHGLDALIERHGL-VPAARHRALADADLLWQFWRQL 172
>gi|171315543|ref|ZP_02904779.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
gi|171099380|gb|EDT44118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
Length = 375
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 85/175 (48%), Gaps = 20/175 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG S RI EI ++ ST+ TLVNP + +P + GI+ +MV
Sbjct: 16 VFVDLETTGGSSAEHRITEIGVVEIGPLGVSTWTTLVNPGQSIPPFIQQLTGISDEMV-- 73
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P L P L + + LFVAHNA SFD FL EF R + N +
Sbjct: 74 RDAPSFASLAPTLFERLDGK-------LFVAHNA-SFDRGFLRAEFDRAG--IAFNPDVL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
T+ L+R L ++ L AL E +G+ + + HRA+AD + L ++L
Sbjct: 124 CTVRLSRALFPR-----EARHGLDALIERHGL-VPAARHRALADADLLWQFWRQL 172
>gi|42782681|ref|NP_979928.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987]
gi|42738607|gb|AAS42536.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus ATCC
10987]
Length = 315
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|297566609|ref|YP_003685581.1| DNA polymerase III subunit epsilon [Meiothermus silvanus DSM 9946]
gi|296851058|gb|ADH64073.1| DNA polymerase III, epsilon subunit [Meiothermus silvanus DSM 9946]
Length = 252
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 27/192 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGIT-TDMVC 186
+V D+ETTG S IIEIAF L G + FQ VNP +P + + GIT D+
Sbjct: 80 VVLDLETTGLSALENEIIEIAFIRLEGEKRQVFQRFVNPGSPIPPFISRLTGITHRDLEG 139
Query: 187 KPDV-PRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
PDV +E+ +P+L V + NA FD+ FL F R Y++ N
Sbjct: 140 APDVYTVLEEALPLLEDSV-----------LIIQNA-PFDLGFLRPRFLRLGYKMDNE-- 185
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
+DT+ AR + SK L L + + + S HRA+ DV L+ + + +
Sbjct: 186 VIDTVAWARRALPG-----LSKRGLDHLAWAFDLDTIVSRHRALGDVEATLLVAKEMYYM 240
Query: 306 L----KLSLCDL 313
L L+L D+
Sbjct: 241 LTAGKPLALGDV 252
>gi|423401633|ref|ZP_17378806.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-2]
gi|423477729|ref|ZP_17454444.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6X1-1]
gi|401653011|gb|EJS70562.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-2]
gi|402429364|gb|EJV61450.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6X1-1]
Length = 315
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPQNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKYAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|325660790|ref|ZP_08149418.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
gi|325472864|gb|EGC76074.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
Length = 1492
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 92/201 (45%), Gaps = 28/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTDM 184
T +VFDIETTGFS +RIIEI + G F T VNP+ +P + IT DM
Sbjct: 462 TFVVFDIETTGFSAAEDRIIEIGAVKITDGAIVDRFSTFVNPEVPIPFEIQQLTHITDDM 521
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V + P++E+ +P L +V G VAHNA FDV F+ R +
Sbjct: 522 VL--EAPKIEEALPAFLDFV-------GESALVAHNA-GFDVGFIEQNCVRLGRS--RTF 569
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DT+ LAR L+ + SK L + + I L + HRA+ D + I +
Sbjct: 570 TSVDTVGLARVLLPT-----LSKYKLNIVAKALNISL-ENHHRAVDDAAATAEIYVKFIE 623
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
LK ERG T +N
Sbjct: 624 MLK-------ERGMTTLKEVN 637
>gi|228940696|ref|ZP_04103259.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973614|ref|ZP_04134196.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980172|ref|ZP_04140486.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
gi|228779530|gb|EEM27783.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
gi|228786075|gb|EEM34072.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818940|gb|EEM65002.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 324
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 20 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVS 79
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 80 --DAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPTNKV- 128
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A+ D + + Q+
Sbjct: 129 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNALDDCITCAAVYQK 176
>gi|166032729|ref|ZP_02235558.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC
27755]
gi|166027086|gb|EDR45843.1| DNA polymerase III, alpha subunit, Gram-positive type [Dorea
formicigenerans ATCC 27755]
Length = 1521
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 30/218 (13%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D++ + K + T +VFD+ETTGFS ++IIEI + GE + T VNPK
Sbjct: 461 DLQDVAVNEKGQSLKGTYVVFDLETTGFSSAKDKIIEIGAVKVENGEITDKYSTFVNPKI 520
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + IT +MV + P +E ++P L +V G + VAHNA SFDV F
Sbjct: 521 PIPFRITQLTSITDEMVMES--PEIETILPQFLKFV-------GDAVLVAHNA-SFDVSF 570
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
I E R P ++ +DT+ LAR L+ + SK L + + I HRA
Sbjct: 571 -IEENCRQQGIEP-DFTSVDTVGLARVLLPT-----LSKFKLNVVAKALNISQ-EHHHRA 622
Query: 289 MADVNCLSLILQRLTFDLKLSLCDLI-ERGFTPSDLIN 325
+ D R+T ++ + ++ ERG D +N
Sbjct: 623 VDDA--------RVTAEIYVKFIQMLEERGIETLDQMN 652
>gi|402567273|ref|YP_006616618.1| DNA polymerase III subunit epsilon [Burkholderia cepacia GG4]
gi|402248470|gb|AFQ48924.1| DNA polymerase III subunit epsilon [Burkholderia cepacia GG4]
Length = 375
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 20/175 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG S RI EI ++ ST+ TLVNP + +P + GI+ MV
Sbjct: 16 VFVDLETTGGSSAEHRITEIGVVEIGPLGVSTWTTLVNPGQSIPPFIEQLTGISDAMVR- 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P L P L + + LFVAHNA SFD FL EF R + N +
Sbjct: 75 -DAPSFASLAPALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAG--IAFNPDVL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
T+ L+R L S+ L AL E +G+ + + HRA+AD + L ++L
Sbjct: 124 CTVRLSRALFPR-----ESRHGLDALIERHGL-VPAARHRALADADLLWQFWRQL 172
>gi|52141929|ref|YP_084901.1| DNA polymerase III subunit epsilon [Bacillus cereus E33L]
gi|51975398|gb|AAU16948.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
Length = 315
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPVFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|392947199|ref|ZP_10312841.1| exonuclease, DNA polymerase III, epsilon subunit family [Frankia
sp. QA3]
gi|392290493|gb|EIV96517.1| exonuclease, DNA polymerase III, epsilon subunit family [Frankia
sp. QA3]
Length = 626
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 94/214 (43%), Gaps = 18/214 (8%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
+T +V D+ETTG S I EI + GGE + TLV P +P + + GIT
Sbjct: 65 LTFVVVDLETTGTSVATGEITEIGAVRVRGGEVLAEMSTLVRPSVGIPPMVSVITGITDA 124
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P +++P L + + G +L VAHNA FD+ FL RC Y P
Sbjct: 125 MVAT--APAEAEVVPTFLEFAR------GAVL-VAHNA-PFDLGFLRAAAQRCGYP-PPV 173
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
W +DTL +AR ++ + SL L P HRA+AD +L L
Sbjct: 174 WEHLDTLRIARRVVSRDEAPDCRLASLARLFRSSTEPC----HRALADARATVDVLHGLF 229
Query: 304 FDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L + +E S ++P +++K L
Sbjct: 230 DRLGNAGVRTLEELHEYSARVSPAQRRKRYLADG 263
>gi|146297347|ref|YP_001181118.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410923|gb|ABP67927.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 1402
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 23/192 (11%)
Query: 119 ENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVP--NA 175
EN+ L T +V DIETTGF + +RIIEI + GE F T V+P+ ++P +
Sbjct: 382 ENQSLD--TTFVVVDIETTGFDNQKDRIIEIGAVKIENGEIVDRFSTFVDPEGKIPIRIS 439
Query: 176 HVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSR 235
+ GI +MV + P++ D I ++ + G IL VAHNA+ FD+ FL +
Sbjct: 440 ELTGIYQNMV--DNAPKLSDAI------LEFEKFCSGAIL-VAHNAQ-FDIGFLKRSYQE 489
Query: 236 CSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL 295
C + ++ ++DTL L+R ++ S+ +KV+ E+ I L HRA +D
Sbjct: 490 CG--LIFDYTYIDTLELSRRVLTDLSSHKLNKVA-----EFLNIEL-KHHHRADSDAETT 541
Query: 296 SLILQRLTFDLK 307
+ I L LK
Sbjct: 542 AKIFISLIEKLK 553
>gi|423561776|ref|ZP_17538052.1| DNA polymerase III polC-type [Bacillus cereus MSX-A1]
gi|401202033|gb|EJR08898.1| DNA polymerase III polC-type [Bacillus cereus MSX-A1]
Length = 1433
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579]
gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
gi|81433857|sp|Q819Y5.1|DPO3_BACCR RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
Length = 1435
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 419 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 478
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 479 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 528
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 529 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 579
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 580 -----LKDVIEKGFEYHDQLN 595
>gi|423401340|ref|ZP_17378513.1| DNA polymerase III polC-type [Bacillus cereus BAG2X1-2]
gi|423477956|ref|ZP_17454671.1| DNA polymerase III polC-type [Bacillus cereus BAG6X1-1]
gi|401654330|gb|EJS71873.1| DNA polymerase III polC-type [Bacillus cereus BAG2X1-2]
gi|402428118|gb|EJV60215.1| DNA polymerase III polC-type [Bacillus cereus BAG6X1-1]
Length = 1433
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 1433
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
Length = 1433
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803]
gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803]
Length = 1433
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|423396064|ref|ZP_17373265.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-1]
gi|423406944|ref|ZP_17384093.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-3]
gi|401652547|gb|EJS70102.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-1]
gi|401659519|gb|EJS77003.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-3]
Length = 315
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYCNHELVDQFVSYVNPERPIPSRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|423437273|ref|ZP_17414254.1| DNA polymerase III polC-type [Bacillus cereus BAG4X12-1]
gi|401120428|gb|EJQ28224.1| DNA polymerase III polC-type [Bacillus cereus BAG4X12-1]
Length = 1433
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|389815283|ref|ZP_10206629.1| DNA polymerase III polC-type [Planococcus antarcticus DSM 14505]
gi|388466062|gb|EIM08371.1| DNA polymerase III polC-type [Planococcus antarcticus DSM 14505]
Length = 1435
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 28/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + IIE+A + GG+ F++ NP ++ + + GIT DM
Sbjct: 420 TFVVFDLETTGLSAVYDTIIELAAVKIRGGQIIDKFESFANPHHELSSTTIDLTGITDDM 479
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V + P +E++I K + G +I+ VAHNA SFD+ FL + + Y +
Sbjct: 480 V--KNAPEVEEVIR------KYHEWAGDHIM-VAHNA-SFDMGFLYVCYKK--YGIDKKH 527
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DTL LAR L ++ L L + +GI L HRA+ D S +L L
Sbjct: 528 ATIDTLELARMLHPEMKNH-----RLNTLAKKFGIELT-QHHRAIYDTEATSYLLMHL-- 579
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L + ++G D IN
Sbjct: 580 -----LKEADQKGILYHDQIN 595
>gi|365159405|ref|ZP_09355586.1| DNA polymerase III polC-type [Bacillus sp. 7_6_55CFAA_CT2]
gi|363625403|gb|EHL76444.1| DNA polymerase III polC-type [Bacillus sp. 7_6_55CFAA_CT2]
Length = 1433
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus AH1134]
gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264]
gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676]
gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185]
gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550]
gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
gi|423412377|ref|ZP_17389497.1| DNA polymerase III polC-type [Bacillus cereus BAG3O-2]
gi|423431838|ref|ZP_17408842.1| DNA polymerase III polC-type [Bacillus cereus BAG4O-1]
gi|423585773|ref|ZP_17561860.1| DNA polymerase III polC-type [Bacillus cereus VD045]
gi|423628911|ref|ZP_17604660.1| DNA polymerase III polC-type [Bacillus cereus VD154]
gi|423641101|ref|ZP_17616719.1| DNA polymerase III polC-type [Bacillus cereus VD166]
gi|423649681|ref|ZP_17625251.1| DNA polymerase III polC-type [Bacillus cereus VD169]
gi|423656677|ref|ZP_17631976.1| DNA polymerase III polC-type [Bacillus cereus VD200]
gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus AH1134]
gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus B4264]
gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550]
gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185]
gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676]
gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
gi|401104445|gb|EJQ12422.1| DNA polymerase III polC-type [Bacillus cereus BAG3O-2]
gi|401116594|gb|EJQ24432.1| DNA polymerase III polC-type [Bacillus cereus BAG4O-1]
gi|401233119|gb|EJR39615.1| DNA polymerase III polC-type [Bacillus cereus VD045]
gi|401268456|gb|EJR74504.1| DNA polymerase III polC-type [Bacillus cereus VD154]
gi|401280162|gb|EJR86084.1| DNA polymerase III polC-type [Bacillus cereus VD166]
gi|401282961|gb|EJR88858.1| DNA polymerase III polC-type [Bacillus cereus VD169]
gi|401290418|gb|EJR96112.1| DNA polymerase III polC-type [Bacillus cereus VD200]
Length = 1433
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|408356826|ref|YP_006845357.1| DNA polymerase III PolC-type [Amphibacillus xylanus NBRC 15112]
gi|407727597|dbj|BAM47595.1| DNA polymerase III PolC-type [Amphibacillus xylanus NBRC 15112]
Length = 1428
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 93/187 (49%), Gaps = 21/187 (11%)
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH 178
++DL K T +VFD+ETTG S + IIE+A + GE F+ NP + + +
Sbjct: 406 DRDL-KDATYVVFDVETTGLSAVYDTIIELAAVKIKNGEIIDKFERFANPHQPLSQTIID 464
Query: 179 --GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC 236
GIT DM+ D P +E+++ ++ G + VAHNA FD+ F+ F R
Sbjct: 465 LTGITDDML--QDAPEVEEVLQEFHDWI-------GDGILVAHNA-GFDIGFINQGFQRI 514
Query: 237 SYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
E N + +DTL L+R ++ S+ L L ++YGI L HRA+ D +
Sbjct: 515 DLEKVKNPV-IDTLELSRFILPQLKSH-----RLNILCKHYGIELT-QHHRAIYDTEATA 567
Query: 297 LILQRLT 303
+L +L
Sbjct: 568 YLLWKLV 574
>gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
Length = 1435
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 419 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 478
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 479 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 528
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 529 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 579
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 580 -----LKDVIEKGFEYHDQLN 595
>gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus G9241]
gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus G9241]
Length = 1433
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 1435
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 419 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 478
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 479 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 528
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 529 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 579
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 580 -----LKDVIEKGFEYHDQLN 595
>gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|423582028|ref|ZP_17558139.1| DNA polymerase III polC-type [Bacillus cereus VD014]
gi|423635411|ref|ZP_17611064.1| DNA polymerase III polC-type [Bacillus cereus VD156]
gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|401212907|gb|EJR19648.1| DNA polymerase III polC-type [Bacillus cereus VD014]
gi|401278162|gb|EJR84098.1| DNA polymerase III polC-type [Bacillus cereus VD156]
Length = 1433
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|423425954|ref|ZP_17402985.1| DNA polymerase III polC-type [Bacillus cereus BAG3X2-2]
gi|423503505|ref|ZP_17480097.1| DNA polymerase III polC-type [Bacillus cereus HD73]
gi|449090759|ref|YP_007423200.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|401110701|gb|EJQ18600.1| DNA polymerase III polC-type [Bacillus cereus BAG3X2-2]
gi|402458859|gb|EJV90599.1| DNA polymerase III polC-type [Bacillus cereus HD73]
gi|449024516|gb|AGE79679.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 1433
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|218898970|ref|YP_002447381.1| DNA polymerase III PolC [Bacillus cereus G9842]
gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
str. T04001]
gi|402558856|ref|YP_006601580.1| DNA polymerase III PolC [Bacillus thuringiensis HD-771]
gi|423359146|ref|ZP_17336649.1| DNA polymerase III polC-type [Bacillus cereus VD022]
gi|434376921|ref|YP_006611565.1| DNA polymerase III PolC [Bacillus thuringiensis HD-789]
gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus G9842]
gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
gi|401085018|gb|EJP93264.1| DNA polymerase III polC-type [Bacillus cereus VD022]
gi|401787508|gb|AFQ13547.1| DNA polymerase III PolC [Bacillus thuringiensis HD-771]
gi|401875478|gb|AFQ27645.1| DNA polymerase III PolC [Bacillus thuringiensis HD-789]
Length = 1433
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
Length = 1433
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + ++ + K G + L VAHNA SFD+ FL F +C + P N
Sbjct: 477 LT--DAPEVGEV------FKKFESWMGDHTL-VAHNA-SFDMGFLNVGFKKCGLDKPKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF + +N
Sbjct: 578 -----LKDVIEKGFEYHNQLN 593
>gi|153810942|ref|ZP_01963610.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
gi|149832830|gb|EDM87913.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
obeum ATCC 29174]
Length = 1439
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 85/181 (46%), Gaps = 21/181 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS +IIEI + G F T VNPK +P + I MV
Sbjct: 414 VVFDIETTGFSPLTCQIIEIGAVRVENGVITDRFSTFVNPKVPIPYRIEQLTSINDSMVM 473
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P ++ ++P L + + VAHNA FD+ F+I R +P + +
Sbjct: 474 --DAPDIQTILPQFLEFCAG-------AVMVAHNA-DFDMSFIIENCKRQG--LPQEYTY 521
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+DT+ +AR L+ + ++ L + + G+ L HRA+ D C + I R L
Sbjct: 522 VDTVGMARFLLPA-----LNRFKLDTVAKAVGVSL-DHHHRAVDDAACTAEIFVRFVEML 575
Query: 307 K 307
K
Sbjct: 576 K 576
>gi|229128882|ref|ZP_04257858.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
gi|228654587|gb|EEL10449.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
Length = 318
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 73 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 123 IDTVFLAKKYMKHATNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 170
>gi|30021712|ref|NP_833343.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579]
gi|29897267|gb|AAP10544.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
Length = 315
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHATNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|423457999|ref|ZP_17434796.1| DNA polymerase III polC-type [Bacillus cereus BAG5X2-1]
gi|401148383|gb|EJQ55876.1| DNA polymerase III polC-type [Bacillus cereus BAG5X2-1]
Length = 1433
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|335044623|ref|ZP_08537648.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
[Methylophaga aminisulfidivorans MP]
gi|333787869|gb|EGL53753.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
[Methylophaga aminisulfidivorans MP]
Length = 480
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 28/205 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
I+ D ETTG ++RI EI +++ GE +Q+L+NP+R +P + + GI MV
Sbjct: 2 ILLDCETTGGRASHDRITEIGLIEVIDGEVKDKWQSLINPQRPIPPWISKITGIDDAMVI 61
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +++ L ++ G IL VAHNAR FD FL EF R Y+ L
Sbjct: 62 --DSPTFDEIASELYERLQ------GTIL-VAHNAR-FDYSFLKQEFKRVGYDYSAKTLC 111
Query: 247 MDTLTLARELM-KSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL----SLILQR 301
++ L+R + + G +L + R IP HRAMAD + + ++I Q+
Sbjct: 112 --SVKLSRRVYPRHQGHSLDKIIQ----RHQIDIP---DRHRAMADTDAILSYFTIIQQQ 162
Query: 302 LTFDL-KLSLCDLIERGFTPSDLIN 325
+ L + S+ ++++R PS L N
Sbjct: 163 VDETLIQKSIAEILKRPSLPSHLDN 187
>gi|158320555|ref|YP_001513062.1| DNA polymerase III subunit alpha [Alkaliphilus oremlandii OhILAs]
gi|158140754|gb|ABW19066.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
Length = 1441
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 15/131 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDMVC 186
I+FDIETTG S +N+ I EI + +F TL+NP+R +P V GI+ DMV
Sbjct: 427 IIFDIETTGLSSKNDEITEIGAIKIKNNRIIDSFSTLINPERSIPEKIVELTGISDDMV- 485
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E ++P L ++ G VAHN+ FD F+ ++ R YE+ + +
Sbjct: 486 -KDQPTIEVVLPQFLDFI-------GDCPVVAHNS-DFDTGFIRDKAER--YELSFDNIA 534
Query: 247 MDTLTLARELM 257
+DTL LAR L+
Sbjct: 535 IDTLKLARALL 545
>gi|119718032|ref|YP_924997.1| exonuclease [Nocardioides sp. JS614]
gi|119538693|gb|ABL83310.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
JS614]
Length = 405
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 13/110 (11%)
Query: 131 VFDIETTG-FSRENERIIEIAFQDLL--GGENSTFQTLVNPKRQVPNAHVHGITTDMVCK 187
+ D+ETTG F ++++RI+EI ++ G + TLVNP+R V H+HGIT V
Sbjct: 6 IIDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATLVNPQRDVGPTHIHGITARDVL- 64
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCS 237
D P +++ P L+ + R VAHNAR FD FL EF R S
Sbjct: 65 -DAPTFQEVAPYLIGSLAGRT-------LVAHNAR-FDTQFLDYEFERAS 105
>gi|374996674|ref|YP_004972173.1| DNA polymerase III subunit alpha [Desulfosporosinus orientis DSM
765]
gi|357215040|gb|AET69658.1| DNA polymerase III, alpha chain [Desulfosporosinus orientis DSM
765]
Length = 1444
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 41/190 (21%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T V D+ETTGFS E+I EI G+ F VNP++ +P V IT +M
Sbjct: 420 TYCVLDLETTGFSPVTEKITEIGIMKFKDGKVIDEFSCFVNPEKPIPARVVEVTNITDEM 479
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D +E + P LL +++ + VAHNA FD+ FL + Y+ ++
Sbjct: 480 V--KDAETIEQVFPKLLDFIEGS-------VLVAHNAE-FDIGFLKHNARVLGYDF--DY 527
Query: 245 LFMDTLTLARELM------KSG--GSNLPSKVSLQALREYYGIPLVGSAHRAMADVN--- 293
++DTL+LA+EL K G NL KV + AHRA+ DV+
Sbjct: 528 TYLDTLSLAKELFPDYKTYKLGRIAKNLGFKVEV--------------AHRALDDVDTTV 573
Query: 294 -CLSLILQRL 302
+++L++L
Sbjct: 574 KVFNVMLEKL 583
>gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3]
gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3]
Length = 1433
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|423599107|ref|ZP_17575107.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD078]
gi|401236091|gb|EJR42557.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD078]
Length = 315
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNNV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|228916240|ref|ZP_04079810.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843438|gb|EEM88516.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 315
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|311741608|ref|ZP_07715431.1| epsilon subunit family exonuclease [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311303272|gb|EFQ79352.1| epsilon subunit family exonuclease [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 221
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 23/178 (12%)
Query: 131 VFDIETTGFSRENERIIEIAF--QDLLGGENSTFQTLVNPK-RQVPNAHVHGITTDMVCK 187
V D ETTGF++ +RIIE+A D ++ TL+NP + + N+H+HGIT DMV
Sbjct: 23 VIDTETTGFNKRYDRIIELAAVRADSHFNPIDSWHTLLNPDGKAIKNSHIHGITNDMVVT 82
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN---W 244
P ++ Y+ Q LF AHNA FD ++ E R + + +
Sbjct: 83 --APTFSEVYGDFTSYIDGMQ------LF-AHNA-PFDSKMIVAEVDRMTGGDNDGDEFF 132
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
F+DT+ LA++++ G NLP+ + L AH A+AD +L L
Sbjct: 133 PFIDTIDLAKQMLDCGPYNLPALLDRLGLDN-------PDAHAAVADATSTVNMLHAL 183
>gi|365159610|ref|ZP_09355788.1| exonuclease, DNA polymerase III, epsilon subunit, partial [Bacillus
sp. 7_6_55CFAA_CT2]
gi|363625073|gb|EHL76127.1| exonuclease, DNA polymerase III, epsilon subunit, partial [Bacillus
sp. 7_6_55CFAA_CT2]
Length = 317
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
gi|384187875|ref|YP_005573771.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676191|ref|YP_006928562.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
gi|452200255|ref|YP_007480336.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175320|gb|AFV19625.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
gi|452105648|gb|AGG02588.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 1433
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
Length = 1433
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|357055609|ref|ZP_09116676.1| hypothetical protein HMPREF9467_03648 [Clostridium clostridioforme
2_1_49FAA]
gi|355382273|gb|EHG29373.1| hypothetical protein HMPREF9467_03648 [Clostridium clostridioforme
2_1_49FAA]
Length = 1568
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 21/191 (10%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D +Q++ ++ T +VFDIETTGFS + +IIEI ++ G F T VNP
Sbjct: 528 DTKQLVENSRGQDFGDTFVVFDIETTGFSPKKNKIIEIGAVKVVDGRITDKFSTFVNPDV 587
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + GI MV P+++ ++P L +V G + VAHNA SFDV F
Sbjct: 588 PIPFDIEKLTGINDSMVLP--YPKIDVILPQFLEFV-------GDAVLVAHNA-SFDVGF 637
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
I F+ E+P + +DT+ +AR L+ NL ++ L + + I L + HRA
Sbjct: 638 -IGHFAE-KLELPFDPTVLDTVAIARLLL----PNL-NRFKLDTVAKALNISLQ-NHHRA 689
Query: 289 MADVNCLSLIL 299
+ D + I
Sbjct: 690 VDDAGATAEIF 700
>gi|229197718|ref|ZP_04324438.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
gi|228585795|gb|EEK43893.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
Length = 315
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|229151805|ref|ZP_04280004.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
gi|228631618|gb|EEK88248.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
Length = 318
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVS 73
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 74 --DAPTIEEVLPLFLAFLHAN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 123 IDTVFLAKKYMKQAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 170
>gi|423550694|ref|ZP_17527021.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
ISP3191]
gi|401189078|gb|EJQ96138.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
ISP3191]
Length = 315
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPQNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|229061173|ref|ZP_04198523.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
gi|228718044|gb|EEL69684.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
Length = 318
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGITNYRV- 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 73 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNNV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 123 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 170
>gi|160940984|ref|ZP_02088323.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC
BAA-613]
gi|158436074|gb|EDP13841.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC
BAA-613]
Length = 1565
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 21/191 (10%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D +Q++ ++ T +VFDIETTGFS + +IIEI ++ G F T VNP
Sbjct: 525 DTKQLVENSRGQDFGDTFVVFDIETTGFSPKKNKIIEIGAVKVVDGRITDKFSTFVNPDV 584
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + GI MV P+++ ++P L +V G + VAHNA SFDV F
Sbjct: 585 PIPFDIEKLTGINDSMVLP--YPKIDVILPQFLEFV-------GDAVLVAHNA-SFDVGF 634
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
I F+ E+P + +DT+ +AR L+ NL ++ L + + I L + HRA
Sbjct: 635 -IGHFAE-KLELPFDPTVLDTVAIARLLL----PNL-NRFKLDTVAKALNISLQ-NHHRA 686
Query: 289 MADVNCLSLIL 299
+ D + I
Sbjct: 687 VDDAGATAEIF 697
>gi|229134413|ref|ZP_04263226.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
gi|228649034|gb|EEL05056.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
Length = 318
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGITNYRV- 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 73 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNNV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 123 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 170
>gi|49478968|ref|YP_037688.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|301055098|ref|YP_003793309.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar
anthracis str. CI]
gi|49330524|gb|AAT61170.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|300377267|gb|ADK06171.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar
anthracis str. CI]
Length = 315
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPQNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|336420894|ref|ZP_08601055.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lachnospiraceae bacterium 5_1_57FAA]
gi|336003913|gb|EGN33989.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lachnospiraceae bacterium 5_1_57FAA]
Length = 1499
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 90/183 (49%), Gaps = 25/183 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFD+ETTGFS ++IIEI + G+ F T VNPK +P + IT MV
Sbjct: 463 VVFDLETTGFSPIKDKIIEIGAVKVENGKITERFSTFVNPKIPIPFRITQLTSITDQMVM 522
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE--VPNNW 244
D P ++ ++P L ++ G + VAHNA SFDV F+ C Y+ VP N+
Sbjct: 523 --DAPDIDTVLPQFLEFI-------GDAVLVAHNA-SFDVGFIEQ---NCRYQDIVP-NF 568
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DT+ +AR L+ + SK L + I L + HRA+ D + I +
Sbjct: 569 TSVDTVAMARILLPT-----LSKFKLNVVANALHISL-ENHHRAVDDAGATAEIFVKFVE 622
Query: 305 DLK 307
LK
Sbjct: 623 MLK 625
>gi|374307834|ref|YP_005054265.1| DNA polymerase III subunit alpha [Filifactor alocis ATCC 35896]
gi|291166154|gb|EFE28200.1| DNA polymerase III, alpha subunit, Gram-positive type [Filifactor
alocis ATCC 35896]
Length = 1407
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 96/196 (48%), Gaps = 25/196 (12%)
Query: 112 DIEQIIAE--NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNP 168
D+ I+ E +KDL + +VFDIETTGFS N+ IIEI + E F VNP
Sbjct: 373 DMSNILKEFNDKDLNQ--EFVVFDIETTGFSSINDAIIEIGAVKIKNREIIDRFSEFVNP 430
Query: 169 KRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDV 226
KR++P + IT +MVC D +E+++P + + K +FVAHN+ FD
Sbjct: 431 KREIPYHITELTSITNEMVCNEDT--IEEVLPRFMEFSKDS-------VFVAHNS-DFDT 480
Query: 227 PFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAH 286
F+ R ++ + + +DT+ L+R L+ + L + + GI L + H
Sbjct: 481 SFIKENCKRL--DLLYDRIAIDTVELSRALLTD-----LKRHKLNVVAKKLGISL-ENHH 532
Query: 287 RAMADVNCLSLILQRL 302
RA+ D + I +
Sbjct: 533 RAVDDAEATAQIFLKF 548
>gi|423585980|ref|ZP_17562067.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD045]
gi|423649484|ref|ZP_17625054.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD169]
gi|401232393|gb|EJR38894.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD045]
gi|401283513|gb|EJR89401.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD169]
Length = 315
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|228934882|ref|ZP_04097713.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228824782|gb|EEM70583.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 315
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPQNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|228953879|ref|ZP_04115918.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|423425678|ref|ZP_17402709.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3X2-2]
gi|423503715|ref|ZP_17480307.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HD73]
gi|449090544|ref|YP_007422985.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228805847|gb|EEM52427.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|401112169|gb|EJQ20050.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3X2-2]
gi|402458534|gb|EJV90280.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HD73]
gi|449024301|gb|AGE79464.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 315
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|206969177|ref|ZP_03230132.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH1134]
gi|229071110|ref|ZP_04204336.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
gi|423437070|ref|ZP_17414051.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4X12-1]
gi|423581813|ref|ZP_17557924.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD014]
gi|206736218|gb|EDZ53376.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH1134]
gi|228712050|gb|EEL63999.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
gi|401121401|gb|EJQ29192.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4X12-1]
gi|401214155|gb|EJR20886.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD014]
Length = 315
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|423574790|ref|ZP_17550909.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-D12]
gi|423604758|ref|ZP_17580651.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD102]
gi|401211060|gb|EJR17809.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-D12]
gi|401243906|gb|EJR50270.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD102]
Length = 315
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|302670324|ref|YP_003830284.1| DNA polymerase III subunit C [Butyrivibrio proteoclasticus B316]
gi|302394797|gb|ADL33702.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
Length = 1529
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 22/200 (11%)
Query: 112 DIEQIIAENKDLA-KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPK 169
D+++I+ +K T +VFDIETTGFS RIIEI + GE F +NP+
Sbjct: 480 DLKEIVVNDKGQPLDDTTFVVFDIETTGFSPIKNRIIEIGAVKIRNGEILERFSEFINPQ 539
Query: 170 RQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVP 227
+P + IT +MV D P E +IP + + K + V HN +FD+
Sbjct: 540 VPIPYRIEKLTSITDEMVM--DAPTREVIIPKFVEFCKDA-------VLVGHNV-AFDIS 589
Query: 228 FLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHR 287
F+ +V ++ +DTL LAR L +K +L A+ + + ++ HR
Sbjct: 590 FINQNCQDLGIDV--DYTTVDTLWLARYFFP-----LQAKHTLDAVAKTLNV-VLDHHHR 641
Query: 288 AMADVNCLSLILQRLTFDLK 307
A+ D C +LI + LK
Sbjct: 642 AVDDAECTALIFNKFIPMLK 661
>gi|134098272|ref|YP_001103933.1| hypothetical protein SACE_1689 [Saccharopolyspora erythraea NRRL
2338]
gi|133910895|emb|CAM01008.1| DNA polymerase III, epsilon subunit [Saccharopolyspora erythraea
NRRL 2338]
Length = 572
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 107/224 (47%), Gaps = 18/224 (8%)
Query: 114 EQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQV 172
++I+ E + VT +V D+ETTG S + + EI + GGE FQTLV+P+R +
Sbjct: 10 DEIVPEVEVPLNEVTFVVVDLETTGGSNAQDAVTEIGAVKVRGGEVVGEFQTLVDPERDI 69
Query: 173 PNAHV--HGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLI 230
P + V GIT MV D PR++ ++P L + + G +L VAHNA FD FL
Sbjct: 70 PPSVVTITGITEAMVR--DAPRLDSVLPAFLEFCR------GSVL-VAHNA-PFDTGFLR 119
Query: 231 NEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMA 290
R P + T+ LAR ++ + +L + P+ + A A
Sbjct: 120 AGCERLGLRWPKPKVVC-TVRLARRVLTRDETPNYRLGTLAGVLGARTEPVHRALDDARA 178
Query: 291 DVNCLSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKL 334
V+ L +L+RL +L DL+ G P + P +++K L
Sbjct: 179 TVDVLHALLERLGPIGVRTLEDLL--GHLPD--VTPLQRRKRGL 218
>gi|332143320|ref|YP_004429058.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Deep ecotype']
gi|327553342|gb|AEB00061.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
'Deep ecotype']
Length = 715
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 109/217 (50%), Gaps = 31/217 (14%)
Query: 97 VNKTEISKIQRIQH--YDIE-QIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQD 153
+ + ++ IQR+Q +D+ + +D A+ +V DIETTG + RI EI
Sbjct: 510 LRRNQLVSIQRLQQAGFDVAVTTVNWVRDPAQ--PYVVVDIETTGGNNSYNRITEIGMVK 567
Query: 154 LLGG-ENSTFQTLVNPKRQVPNA--HVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKP 210
L+GG E FQTL+NP+R++P++ + GI+ DMV D P ++ + + +
Sbjct: 568 LVGGKEVDRFQTLLNPQRRIPSSITRLTGISDDMVA--DAPLFAEVADHIASFTED---- 621
Query: 211 GGYILFVAHNARSFDVPFLINEFSRC--SYEVPNNWLFMDTLTLARELMKSGGSNLPSKV 268
+FVAHN +FD F+ EF+R S+ P + RE+ ++ S
Sbjct: 622 ---AVFVAHNV-NFDYGFIKQEFARLEQSFRRPK-------MCTVREMRRTHPG--LSSY 668
Query: 269 SLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
SL L +++ I + HRA++D + +L +L F+
Sbjct: 669 SLANLTKHFHIDM-EQHHRALSDAKAAAELL-KLAFE 703
>gi|295677334|ref|YP_003605858.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1002]
gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
Length = 382
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 86/180 (47%), Gaps = 21/180 (11%)
Query: 126 LVTAIVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITT 182
L IVF D+ETTG S RI E+ ++ S + +LV+P++ +P+ + GIT
Sbjct: 11 LDAPIVFVDLETTGGSTSEHRITEVGVVEVGPAGVSRWSSLVDPQQPIPSFIQQLTGITN 70
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
DMV P E + P L + + LFVAHNA SFD FL +EF R
Sbjct: 71 DMVRG--APTFESIAPALFERLNGK-------LFVAHNA-SFDRGFLRSEFRRAGIAFDP 120
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ + T+ L+R L + L AL E + + + HRA+AD + + QRL
Sbjct: 121 D--VLCTVRLSRALFPG-----EKRHGLDALVERHAL-VPSDRHRALADADLIWQFWQRL 172
>gi|228922317|ref|ZP_04085624.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837372|gb|EEM82706.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 318
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 73 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 123 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 170
>gi|383823222|ref|ZP_09978427.1| hypothetical protein MXEN_00380 [Mycobacterium xenopi RIVM700367]
gi|383339547|gb|EID17882.1| hypothetical protein MXEN_00380 [Mycobacterium xenopi RIVM700367]
Length = 626
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 101/223 (45%), Gaps = 32/223 (14%)
Query: 128 TAIVFDIETTGFSREN------ERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH-- 178
T +V D+ETTG + I EI + GG F TLV+P+R +P V
Sbjct: 23 TFVVVDLETTGGRATGAAETAADAITEIGAVKVRGGAVLGEFATLVDPQRDIPAQIVRLT 82
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GITT MVC D P + ++P+ + + G +L VAHNAR FD+ FL R
Sbjct: 83 GITTAMVC--DAPTIGAVLPMFFDFAR------GAVL-VAHNAR-FDLAFLRAAAERLHI 132
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNC 294
P + T+ LAR ++ PS V L AL + + HRA+AD V
Sbjct: 133 PWPRPPVLC-TVGLARRVLSR--EEAPS-VQLAALARLFAV-ASQPTHRALADARATVEV 187
Query: 295 LSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L +L+R+ + DL R + P + P ++ K L +
Sbjct: 188 LHALLERVGNQGVHTYADL--RAYLPG--LTPAQRSKRTLAED 226
>gi|229168326|ref|ZP_04296051.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
gi|228615152|gb|EEK72252.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
Length = 318
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGITNYRV- 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 73 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNNV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 123 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 170
>gi|167759386|ref|ZP_02431513.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
gi|167662943|gb|EDS07073.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
scindens ATCC 35704]
Length = 1499
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 90/183 (49%), Gaps = 25/183 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFD+ETTGFS ++IIEI + G+ F T VNPK +P + IT MV
Sbjct: 463 VVFDLETTGFSPIKDKIIEIGAVKVENGKITERFSTFVNPKIPIPFRITQLTSITDQMVM 522
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE--VPNNW 244
D P ++ ++P L ++ G + VAHNA SFDV F+ C Y+ VP N+
Sbjct: 523 --DAPDIDTVLPQFLEFI-------GDAVLVAHNA-SFDVGFIEQ---NCRYQDIVP-NF 568
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DT+ +AR L+ + SK L + I L + HRA+ D + I +
Sbjct: 569 TSVDTVAMARILLPT-----LSKFKLNVVANALHISL-ENHHRAVDDAGATAEIFVKFVE 622
Query: 305 DLK 307
LK
Sbjct: 623 MLK 625
>gi|218231342|ref|YP_002368423.1| DNA polymerase III subunit epsilon [Bacillus cereus B4264]
gi|229146178|ref|ZP_04274553.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
gi|296504117|ref|YP_003665817.1| DNA polymerase III subunit epsilon TlpA [Bacillus thuringiensis
BMB171]
gi|218159299|gb|ACK59291.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
B4264]
gi|228637237|gb|EEK93692.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
gi|296325169|gb|ADH08097.1| DNA polymerase III subunit epsilon tlpA [Bacillus thuringiensis
BMB171]
Length = 315
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|68535768|ref|YP_250473.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411]
gi|68263367|emb|CAI36855.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411]
Length = 222
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 17/143 (11%)
Query: 131 VFDIETTGFSRENERIIEIAF--QDLLGGENSTFQTLVNPK-RQVPNAHVHGITTDMVCK 187
V D ETTGF++ +RIIEIA D ++ TL+NP + + N+H+HGIT DMV
Sbjct: 23 VIDTETTGFNKRYDRIIEIAAVRADAHFNPVDSWHTLLNPDGKAIKNSHIHGITNDMVAT 82
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN---- 243
P ++ Y+ G LF AHNA FD ++ E R + N
Sbjct: 83 --APTFSEVYGDFTSYID------GMHLF-AHNA-PFDSKMIVAEVDRMTGVDDGNEDEF 132
Query: 244 WLFMDTLTLARELMKSGGSNLPS 266
+ F+DT+ LA++++ G NLP+
Sbjct: 133 FPFIDTIDLAKQMLDRGPYNLPA 155
>gi|423641294|ref|ZP_17616912.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD166]
gi|401278558|gb|EJR84489.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD166]
Length = 315
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|423412576|ref|ZP_17389696.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3O-2]
gi|423431639|ref|ZP_17408643.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4O-1]
gi|401103404|gb|EJQ11386.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3O-2]
gi|401117708|gb|EJQ25544.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4O-1]
Length = 315
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|229018800|ref|ZP_04175648.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
gi|229025042|ref|ZP_04181470.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
gi|228736248|gb|EEL86815.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
gi|228742492|gb|EEL92644.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
Length = 315
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 22/172 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +PN + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPERPIPNRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPFFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD-VNCLSL 297
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + C ++
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAV 164
>gi|218898703|ref|YP_002447114.1| DNA polymerase III subunit epsilon [Bacillus cereus G9842]
gi|218544955|gb|ACK97349.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
G9842]
Length = 315
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|423628691|ref|ZP_17604440.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD154]
gi|401269216|gb|EJR75251.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD154]
Length = 315
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|229111034|ref|ZP_04240593.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
gi|228672397|gb|EEL27682.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
Length = 318
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 73 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 123 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 170
>gi|42527504|ref|NP_972602.1| DNA polymerase III [Treponema denticola ATCC 35405]
gi|422342441|ref|ZP_16423381.1| DNA polymerase III domain-containing protein [Treponema denticola
F0402]
gi|449104845|ref|ZP_21741582.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola AL-2]
gi|449108957|ref|ZP_21745598.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola ATCC 33520]
gi|449111494|ref|ZP_21748088.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola ATCC 33521]
gi|449113693|ref|ZP_21750178.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola ATCC 35404]
gi|449116277|ref|ZP_21752728.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola H-22]
gi|449119643|ref|ZP_21756039.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola H1-T]
gi|449122034|ref|ZP_21758380.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola MYR-T]
gi|449124015|ref|ZP_21760335.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola OTK]
gi|449127958|ref|ZP_21764228.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola SP33]
gi|449131699|ref|ZP_21767907.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola SP37]
gi|41818089|gb|AAS12513.1| DNA polymerase III domain protein [Treponema denticola ATCC 35405]
gi|325473756|gb|EGC76945.1| DNA polymerase III domain-containing protein [Treponema denticola
F0402]
gi|448938558|gb|EMB19488.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola SP37]
gi|448943290|gb|EMB24182.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola SP33]
gi|448943409|gb|EMB24300.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola OTK]
gi|448949475|gb|EMB30300.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola MYR-T]
gi|448950633|gb|EMB31455.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola H1-T]
gi|448954164|gb|EMB34947.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola H-22]
gi|448958089|gb|EMB38827.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola ATCC 33521]
gi|448958151|gb|EMB38885.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola ATCC 35404]
gi|448961232|gb|EMB41940.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola ATCC 33520]
gi|448962331|gb|EMB43021.1| exonuclease, DNA polymerase III, epsilon subunit [Treponema
denticola AL-2]
Length = 217
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 21/172 (12%)
Query: 131 VFDIETTGFSRENERIIEIAFQDL-LGGENSTFQTLVNPKRQVP--NAHVHGITTDMVCK 187
FD ETTG + ER++EI + G + + L++P++ +P V+ IT +M+
Sbjct: 18 AFDTETTGTEAKAERVVEIGCVKFDIRGVIARYNVLIDPEKPMPPEAGKVNQITDEMLAG 77
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
P+ +++P L ++++ + VAHNA SFD+ F+ E RC N +F
Sbjct: 78 Q--PKFAEVLPDFLDFIRN-------TVLVAHNA-SFDINFINCELERCGKTKLTNKVF- 126
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN-CLSLI 298
DTLT ARE + S +LQ L +G+ V +AHRA D C+
Sbjct: 127 DTLTFARETLPGLQS-----YALQNLATQFGVQAV-NAHRAEDDARVCMEFF 172
>gi|229080815|ref|ZP_04213333.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
gi|229191695|ref|ZP_04318674.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
gi|228591857|gb|EEK49697.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
gi|228702549|gb|EEL55017.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
Length = 318
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 73 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 123 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 170
>gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium
PHSC20C1]
gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium
PHSC20C1]
Length = 417
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 22/173 (12%)
Query: 131 VFDIETTG-FSRENERIIEIAFQ--DLLGGENSTFQTLVNPKRQVPNAHVHGI-TTDMVC 186
V D ETTG F+ ++R++E+A D G ++TLVNP R + +H I +D+V
Sbjct: 8 VIDFETTGLFAGGHDRVVEVAVVHLDAQGTVEGRWETLVNPGRDLGPQRIHQIRASDIV- 66
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P E + L+ ++ R + VAHNA SFD+ FL+ E R + + +++
Sbjct: 67 --DAPAFEHIAGQLVDLLEGR-------VLVAHNA-SFDLKFLVAELERTAAWMSTDFVS 116
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
+ T+ LARE + G L + ++ + AHRA AD + +L
Sbjct: 117 LCTMQLAREYLPGAGRALADCCAALDIQ-------LDDAHRASADAFATAQLL 162
>gi|229047293|ref|ZP_04192892.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
gi|228724035|gb|EEL75381.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
Length = 318
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 73 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 123 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 170
>gi|94496604|ref|ZP_01303180.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
gi|94423964|gb|EAT08989.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
Length = 230
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 102/223 (45%), Gaps = 29/223 (13%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLG--GENSTFQTLVNPKRQVPNAH--VHGITTDM 184
I+FD ETTGF +R++EI +L+ TF +P+R +P A VHG++ D
Sbjct: 4 IIFDTETTGFDPASGDRMVEIGCIELVNRVPTGRTFHAYYHPERDMPAAAFAVHGLSADF 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ K V + L LL +++ VAHNAR FD FL +E + C +
Sbjct: 64 LAKHPVFSLGALE--LLDFLEDSP-------LVAHNAR-FDFGFLNHELTLCGHPQVGMH 113
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLILQRLT 303
+DT+ +AR+L +K SL AL YGI H A+ D L+ + LT
Sbjct: 114 RMIDTVAIARQLHPG------AKHSLDALCTRYGIDRSHRVKHGALLDAELLAQLYIELT 167
Query: 304 FDLKLSLC-------DLIERGFTPSDLINPKKKKKSKLVSNQE 339
++ L +++ T S ++ P + + + S QE
Sbjct: 168 GGRQIGLGLAQEEAKEIVRVELTESPVVRPVRPARVFMASAQE 210
>gi|228966505|ref|ZP_04127558.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
sotto str. T04001]
gi|402559080|ref|YP_006601804.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis HD-771]
gi|423359409|ref|ZP_17336912.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD022]
gi|423561995|ref|ZP_17538271.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-A1]
gi|228793227|gb|EEM40777.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
sotto str. T04001]
gi|401083520|gb|EJP91777.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD022]
gi|401200882|gb|EJR07760.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-A1]
gi|401787732|gb|AFQ13771.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis HD-771]
Length = 315
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|47567894|ref|ZP_00238601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus G9241]
gi|47555372|gb|EAL13716.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus G9241]
Length = 303
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 94/183 (51%), Gaps = 21/183 (11%)
Query: 122 DLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVH 178
D++ + +V D ETTGF+ N++II++A E F + VNP+R +P+ +
Sbjct: 6 DVSLPLNYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLT 65
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GIT V D P +E+++P+ L ++ + VAHNA SFD+ FL + +
Sbjct: 66 GITNYRV--SDAPTIEEVLPLFLAFLHKN-------VIVAHNA-SFDMRFLKSNVNMLGL 115
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLI 298
P N + +DT+ LA++ MK ++ L+ L+ GI L S+H A D + +
Sbjct: 116 PEPKNKV-IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAV 167
Query: 299 LQR 301
Q+
Sbjct: 168 YQK 170
>gi|296115251|ref|ZP_06833892.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter
hansenii ATCC 23769]
gi|295978352|gb|EFG85089.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter
hansenii ATCC 23769]
Length = 226
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 102/219 (46%), Gaps = 27/219 (12%)
Query: 129 AIVFDIETTGFSREN-ERIIEIAFQDLLGG--ENSTFQTLVNPKRQVPN--AHVHGIT-T 182
+I+FD ETTG N +R+IEIA +L+G +F+ L++P+R VP + VHG T
Sbjct: 4 SILFDTETTGLDPLNGDRVIEIAALELIGDLPSGRSFRVLIDPERDVPEEASRVHGFTRA 63
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
D+ +P ++ D L ++ + +AHNA +FD FL EF R
Sbjct: 64 DLEGQPKFAQIADE---FLAFIGDDE-------LIAHNA-AFDFGFLNAEFRRAGLPELA 112
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQR 301
+DTL +AR +P+ SL AL + I L + H A+ D L+ +
Sbjct: 113 MTRMVDTLQIARARFP----GMPN--SLDALCRRFSIDLSARTTHNALLDCKLLAEVYIE 166
Query: 302 LTFDLKLSLCDLIERGFTPS---DLINPKKKKKSKLVSN 337
L+ + L +E G TPS D P ++V +
Sbjct: 167 LSGGRQRGLGLSVEEGGTPSAAYDYTRPAGHAVVRVVPD 205
>gi|269794889|ref|YP_003314344.1| exonuclease, DNA polymerase III subunit epsilon family
[Sanguibacter keddieii DSM 10542]
gi|269097074|gb|ACZ21510.1| exonuclease, DNA polymerase III, epsilon subunit family
[Sanguibacter keddieii DSM 10542]
Length = 616
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG S ++ I EI + GGE FQ+LVNP VP A + GITT
Sbjct: 60 VTFVVVDLETTGGSSKDAGITEIGAVKVRGGEVIGEFQSLVNPGHPVPAFIARLTGITTL 119
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P +E ++P L + + G +L VAHNA FD+ FL P N
Sbjct: 120 MVSS--APSIELVLPSFLEFAR------GTVL-VAHNA-PFDISFLKAAARSMDLAWPGN 169
Query: 244 WLFMDTLTLARELM 257
+ +DT+ LAR ++
Sbjct: 170 QV-LDTVPLARRVV 182
>gi|373471483|ref|ZP_09562520.1| DNA polymerase III, alpha subunit [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371759470|gb|EHO48202.1| DNA polymerase III, alpha subunit [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 1480
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 25/224 (11%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D++++++ D IVFDIETTGFS +N+ I EI ++ GE F T VNPKR
Sbjct: 439 DLKELVSNPADKTLDDGFIVFDIETTGFSAKNDAITEIGAVKVVNGEIVDRFSTFVNPKR 498
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + I+ MV + P +E+++P + + YI+ VAHNA FD F
Sbjct: 499 PIPFRIEELTHISDAMVV--NAPVIEEVLPKFFDFCED------YII-VAHNA-GFDTGF 548
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ R + N +DT+ +AR L+ +K L + + I L G HRA
Sbjct: 549 IRENAKRIN--TGYNPSIIDTVAMARLLLPD-----LNKFKLDTVCKALNISLEGH-HRA 600
Query: 289 MADVNCLSLI----LQRLTFDLKLSLCDLIERGFTPSDLINPKK 328
+ D + I ++RL L D+ G T +D++ K
Sbjct: 601 VNDAEATAQIWVEFIKRLKEKGLSKLSDVASLGETNADIVKKTK 644
>gi|339017770|ref|ZP_08643918.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
tropicalis NBRC 101654]
gi|338753091|dbj|GAA07222.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
tropicalis NBRC 101654]
Length = 224
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 28/177 (15%)
Query: 129 AIVFDIETTGFS-RENERIIEIAFQDLLG----GENSTFQTLVNPKRQVPN--AHVHGIT 181
+I+FD ETTG +R+IEIA +L+G G+N F+ L++P+R VP + VHG T
Sbjct: 4 SILFDTETTGLDPATGDRVIEIAAVELVGDLPTGKN--FRVLIDPERDVPEEASRVHGFT 61
Query: 182 T-DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEV 240
D+ +P + D L ++ G +AHNAR FD FL E R Y+
Sbjct: 62 AADLEGQPKFAEIADE---FLAFI-------GDDPLIAHNAR-FDFGFLNAELKRAGYKP 110
Query: 241 PNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLS 296
+ +DTL +ARE +P+ SL AL +G+ L + H A+ D L+
Sbjct: 111 LDMARMVDTLDMARERF----PGMPN--SLDALCRRFGVDLSARTTHNALLDCKLLA 161
>gi|228959796|ref|ZP_04121471.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228799926|gb|EEM46868.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 318
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 73 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 123 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 170
>gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
str. D14]
gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
str. D14]
Length = 1438
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 22/188 (11%)
Query: 122 DLAKLVTAIVFDIETTGFSRENERIIEIAFQDLL-GGENSTFQTLVNPKRQVPNAHVHGI 180
D K T +VFDIETTG S +IIEIA + G E + T VNP ++P H+ +
Sbjct: 414 DELKTATYVVFDIETTGLSVTQNKIIEIAAVKMREGKEIDRYATFVNPHERIP-YHIQQL 472
Query: 181 TT---DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCS 237
T DMV D P +E P+L +V+ + + VAHNAR FD F+ +
Sbjct: 473 TNINDDMV--KDAPDVE---PVLKRFVEFAEDA----ILVAHNAR-FDYDFVNAKLKELG 522
Query: 238 YEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSL 297
+ N + +DTL LAR L + ++ L L Y + L + HRA+ D L
Sbjct: 523 LPIMENPV-LDTLELARMLFPTMKNH-----RLNTLAAKYKVSL-ENHHRAIDDTVALGE 575
Query: 298 ILQRLTFD 305
IL L D
Sbjct: 576 ILNGLLDD 583
>gi|228909419|ref|ZP_04073244.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
gi|228850196|gb|EEM95025.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
Length = 318
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 73 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 123 IDTVFLAKKYMKHAPNH-----KLETLKRILGIRL--SSHNAFDDCITCAAVYQK 170
>gi|162447117|ref|YP_001620249.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A]
gi|161985224|gb|ABX80873.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A]
Length = 1504
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 99/202 (49%), Gaps = 30/202 (14%)
Query: 123 LAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENST-FQTLVNPKRQVPNA--HVHG 179
L K VFDIETTGFS ++IIEIA + GG + F+ L+NP+ Q+ +
Sbjct: 406 LLKEAVYTVFDIETTGFSFTRDKIIEIAAYKVRGGFIAERFEVLINPEEQLSETTKRITN 465
Query: 180 ITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
IT +MV + +E+++P L ++K G +L VAHNA SFD+ F I E SR
Sbjct: 466 ITDEMV--ENEKTIEEVLPTFLEFIK------GTVL-VAHNA-SFDIGF-IYEKSRLLGL 514
Query: 240 VPNNWLFMDTLTLARELMK-------------SGGSNLPS--KVSLQALREYYGIPLVGS 284
+ +DTL +AR + N+P + +L+AL +++ + L +
Sbjct: 515 QHEPFAVIDTLNIARYFYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNL-EA 573
Query: 285 AHRAMADVNCLSLILQRLTFDL 306
HRA+ D + + + D
Sbjct: 574 HHRAIYDAYATAEVFLNMLQDF 595
>gi|429767979|ref|ZP_19300157.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta 470-4]
gi|429189621|gb|EKY30446.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta 470-4]
Length = 241
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 24/180 (13%)
Query: 130 IVFDIETTGFS-RENERIIEIA---FQDLLGGENSTFQTLVNPKRQVP--NAHVHGITTD 183
IV D ETTGF + +R+IE+ +DLL TF +NP+R +P VHGIT D
Sbjct: 5 IVLDTETTGFDPKTGDRLIEVGCIEIEDLLP-TGRTFHRFINPERLIPPDAIKVHGITDD 63
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
V D P+ +++ L+ ++ G +AHNA +FD F+ E R + P
Sbjct: 64 KV--KDAPKFHEVVDDLMEFL-------GDAPLIAHNA-NFDRNFIDFEIGRIGRKPPPQ 113
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQRL 302
++DTL LA++ G +N SL AL + Y I LV + H A+ D L+ + L
Sbjct: 114 DRWIDTLALAQKRF-PGMAN-----SLDALCKRYKISLVERTLHGALIDARLLAEVYLEL 167
>gi|423656466|ref|ZP_17631765.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD200]
gi|401290988|gb|EJR96672.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD200]
Length = 315
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPGPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|340030686|ref|ZP_08666749.1| DNA polymerase III, epsilon subunit [Paracoccus sp. TRP]
Length = 660
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 86/195 (44%), Gaps = 23/195 (11%)
Query: 118 AENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE--NSTFQTLVNPKRQVPNA 175
A + LA L T +VFD ETTG +RI++IA + G F TLVNP R +P A
Sbjct: 444 AASSRLADL-TCVVFDTETTGLDPATDRIVQIAGLRIARGRLTGERFDTLVNPGRPIPPA 502
Query: 176 H--VHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEF 233
VHGIT MV D P M + H+ + + VAHNA FD+ FL
Sbjct: 503 STAVHGITDAMVA--DAPDMVTALTAFRHFTED-------AVLVAHNA-PFDMGFLRRAA 552
Query: 234 SRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADV 292
N +DT+ L+ L G + P SL AL E GI + H AM D
Sbjct: 553 PETGAHFDNQ--VLDTILLSAMLW---GQSAPH--SLDALTERLGIVIPPEERHTAMGDT 605
Query: 293 NCLSLILQRLTFDLK 307
+ RL L+
Sbjct: 606 RATAEAYLRLIAALE 620
>gi|257066105|ref|YP_003152361.1| DNA polymerase III subunit alpha [Anaerococcus prevotii DSM 20548]
gi|256797985|gb|ACV28640.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
Length = 1365
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 21/176 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTDMVC 186
+VFD+ETTG SR +RI EI + GG+ + LVNP+ +P + GIT +MV
Sbjct: 350 VVFDLETTGLSRYKDRITEIGACRVEGGKITEIYNELVNPEMVIPEKIIEITGITNEMV- 408
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P L + K + V N FDV F+ R + N ++
Sbjct: 409 -KDCPTIEEVLPGFLDFCKDS-------ILVGQNT-DFDVGFVRENCHRMGLDF--NPIY 457
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL +AR L K SL + IP + HRA D + I ++
Sbjct: 458 LDTLPMARALFSD-----MKKFSLDKIARKLEIPAF-NHHRASDDARATAQIFIKM 507
>gi|75760700|ref|ZP_00740725.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228902109|ref|ZP_04066273.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
gi|74491818|gb|EAO55009.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228857535|gb|EEN02031.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
Length = 318
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 73 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 123 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 170
>gi|158313649|ref|YP_001506157.1| hypothetical protein Franean1_1813 [Frankia sp. EAN1pec]
gi|158109054|gb|ABW11251.1| DNA polymerase III, epsilon subunit [Frankia sp. EAN1pec]
Length = 603
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 34/222 (15%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
+T +V D+ETTG S I EI + GG+ +LV P +P + + GIT
Sbjct: 27 LTFVVVDLETTGGSPATSEITEIGAVRVRGGQILGEMSSLVRPSAPIPAFISVLTGITGA 86
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + +++P L + + + VAHNA FD+ FL + C Y P
Sbjct: 87 MVAT--APGIGEVVPTFLEFARG-------AVLVAHNA-PFDLGFLRAAATACGYPAP-A 135
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA----HRAMAD----VNCL 295
W +DT+ +AR ++ + SL A L GSA HRA+AD V+ L
Sbjct: 136 WEHLDTVRIARRVISRDETRDCRLSSLAA--------LFGSATQPNHRALADARATVDVL 187
Query: 296 SLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
+ +RL ++ DL E S ++P +++K L +
Sbjct: 188 HGLFERLGNLGVTTIEDLHEY----SARVSPAQRRKRHLADD 225
>gi|218295641|ref|ZP_03496437.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
gi|218243800|gb|EED10327.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
Length = 627
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 35/193 (18%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGG---ENSTFQTLVNPKRQVPNA--HVHGITTDMV 185
FD+ETTG + II + LLG + ++ LV+P R +P A VHG+T +M+
Sbjct: 445 AFDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLTWEML 504
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
D P++E+++P +++ G +L VAHN +FD+ FL + + P
Sbjct: 505 K--DKPKLEEVLPAFRAFLE------GSVL-VAHNG-AFDMAFL----RKVGIDQPP--- 547
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
+DTL LA L + L+ L E +G+P++G H A+ D + + R+
Sbjct: 548 LVDTLLLAHLLFPDLKDH-----RLERLAERFGVPVLGR-HTALGDALMTAEVYARMIPL 601
Query: 306 LKLSLCDLIERGF 318
LK ERGF
Sbjct: 602 LK-------ERGF 607
>gi|410634945|ref|ZP_11345570.1| DNA polymerase III subunit epsilon [Glaciecola lipolytica E3]
gi|410145519|dbj|GAC12775.1| DNA polymerase III subunit epsilon [Glaciecola lipolytica E3]
Length = 711
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 81/172 (47%), Gaps = 21/172 (12%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVCK 187
V DIETTG RI EI ++G + T+QTL+NP+R +P + GI +MV
Sbjct: 548 VVDIETTGGRANQHRITEIGIAKVVGDKVIDTWQTLINPQRHIPQKITQLTGIDDEMVA- 606
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P ++ L +Y+ +FVAHN +FD F+ EF R M
Sbjct: 607 -DAPLFVEIAQTLRNYLAD-------CVFVAHNV-NFDYGFIRAEFERLEQNFR-----M 652
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
L RE M+ LPS SL L ++GI + HRA++D + +L
Sbjct: 653 PKLCTVRE-MRKAVPGLPS-YSLANLTRHFGIDMT-RHHRALSDAQAAAELL 701
>gi|423616157|ref|ZP_17591991.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD115]
gi|401259122|gb|EJR65299.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD115]
Length = 315
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 21/177 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHERVDQFVSYVNPERPIPSRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SNAPTIEEVLPLFLAFLYTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+ T
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQKCT 169
>gi|451819819|ref|YP_007456020.1| DNA polymerase III PolC-type [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451785798|gb|AGF56766.1| DNA polymerase III PolC-type [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 1462
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 21/169 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T V D+ETTGFS E+I EI + G+ F T VNP++ +P V IT DM
Sbjct: 438 TYCVLDLETTGFSPRTEKITEIGIMKIKDGKILDKFSTFVNPQKPIPMRVVEVTKITDDM 497
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V + +E + P +L +++ + VAHNA FD+ FL + Y+ ++
Sbjct: 498 VSSAET--IEKVFPKMLEFIEGS-------VLVAHNAE-FDINFLKHNAKVLGYDF--DF 545
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN 293
++DTL LA+++ S L + + GI V AHRA+ DV+
Sbjct: 546 TYVDTLPLAQDVFPDFKS-----YKLGRIAKNLGIK-VEVAHRALDDVD 588
>gi|433603457|ref|YP_007035826.1| hypothetical protein BN6_16300 [Saccharothrix espanaensis DSM
44229]
gi|407881310|emb|CCH28953.1| hypothetical protein BN6_16300 [Saccharothrix espanaensis DSM
44229]
Length = 571
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 26/217 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + I EI + GG TF TLV+P+R +P V GIT M
Sbjct: 22 TFVVFDLETTGGSANADTITEIGAVKVRGGRVLGTFSTLVDPERGIPPQIVALTGITQLM 81
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V PR+ ++P L + G +L VAHN+ FDV F+ R Y P
Sbjct: 82 VT--GAPRLATVLPAFLEFA------AGSVL-VAHNS-GFDVGFVKAACERHGYHWPKPS 131
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQ 300
+ T+ LAR ++ PS L AL + + I + HRA+ D V L +L+
Sbjct: 132 VVC-TVKLARRVLTR--DEAPS-CRLSALAQLFRIGTTPN-HRALVDAQATVEVLHHLLE 186
Query: 301 RLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
R+ SL +L+ + P + P +++K +L ++
Sbjct: 187 RVGSVGVHSLEELL--AYLPE--VTPAQRRKRELATH 219
>gi|187251744|ref|YP_001876226.1| DNA polymerase III subunit epsilon [Elusimicrobium minutum Pei191]
gi|186971904|gb|ACC98889.1| DNA polymerase III, epsilon subunit [Elusimicrobium minutum Pei191]
Length = 201
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 26/166 (15%)
Query: 132 FDIETTGFS-RENERIIEIAFQDLLGGE---NSTFQTLVNPKRQVPNA--HVHGITTDMV 185
D ETTG S + R+ EIA + G S + T++NP+ + ++HGIT +M
Sbjct: 16 LDTETTGLSPYDGARLCEIAV--ITNGALIAKSEYGTIINPRCVISQEVINIHGITNEMA 73
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
+ P ED+ P+L+ + + V HNA FD+PFL EF+RC +P +
Sbjct: 74 AQ--APYFEDIAPLLIGLLTDS-------VIVCHNA-DFDIPFLAAEFARCGLRMPQT-V 122
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
+DTL AR+ +NL VS L HRAMAD
Sbjct: 123 ILDTLKFARKNGNFKKNNLGFIVSELGLSNE-------GWHRAMAD 161
>gi|374723782|gb|EHR75862.1| DNA polymerase III subunit epsilon [uncultured marine group II
euryarchaeote]
Length = 298
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 16/132 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAF--QDLLGGENSTFQTLVNPKRQVPNA--HVHGI-TTDM 184
+ FD+ETTG S + +RI+++A D GGE ++ LVNP+R +P VHGI D+
Sbjct: 37 LAFDLETTGVSTQYDRIVQLALIGADETGGE-VHYERLVNPRRPIPAGASGVHGIYDHDV 95
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
K D + D + L+ + V HN R FD+ L +E+ R P
Sbjct: 96 RSKGDFSTVADEVAALIEGA----------IIVGHNVRKFDMAMLESEYLRLGKRTPKPK 145
Query: 245 LFMDTLTLAREL 256
MDT L R L
Sbjct: 146 AIMDTYELVRRL 157
>gi|423522593|ref|ZP_17499066.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA4-10]
gi|401174529|gb|EJQ81737.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA4-10]
Length = 315
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPERPIPSRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPLFLAFLDAN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|434376667|ref|YP_006611311.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis HD-789]
gi|401875224|gb|AFQ27391.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis HD-789]
Length = 315
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|379761596|ref|YP_005347993.1| hypothetical protein OCQ_21600 [Mycobacterium intracellulare
MOTT-64]
gi|406030383|ref|YP_006729274.1| hypothetical protein MIP_03183 [Mycobacterium indicus pranii MTCC
9506]
gi|378809538|gb|AFC53672.1| hypothetical protein OCQ_21600 [Mycobacterium intracellulare
MOTT-64]
gi|405128930|gb|AFS14185.1| Hypothetical protein MIP_03183 [Mycobacterium indicus pranii MTCC
9506]
Length = 633
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 29/223 (13%)
Query: 128 TAIVFDIETTG------FSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH-- 178
T +V D+ETTG E + I EI + GG F TL++P+R +P V
Sbjct: 29 TFVVVDLETTGGRTKSAAGTEPDAITEIGAVKVRGGVVLGEFATLIDPQRSIPPQVVRLT 88
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GITT MV D P ++ ++P+ L + + Q G +L VAHNA FD+ FL RC
Sbjct: 89 GITTAMVS--DAPTIDAVLPMFLEFARLDQ---GAVL-VAHNA-GFDIGFLRAAAQRCDI 141
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNC 294
P + T+ LAR ++ PS V L +L + + HRA+ D V+
Sbjct: 142 AWPRPQVLC-TVRLARRVLSR--EEAPS-VRLASLARLFAV-TTQPTHRALDDARATVDV 196
Query: 295 LSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L +++R+ + DL R + P + P +++K L
Sbjct: 197 LHALIERVGNQGVHTYADL--RSYLPD--VAPAQRRKRVLADG 235
>gi|443305295|ref|ZP_21035083.1| hypothetical protein W7U_06465 [Mycobacterium sp. H4Y]
gi|442766859|gb|ELR84853.1| hypothetical protein W7U_06465 [Mycobacterium sp. H4Y]
Length = 633
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 29/223 (13%)
Query: 128 TAIVFDIETTG------FSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH-- 178
T +V D+ETTG E + I EI + GG F TL++P+R +P V
Sbjct: 29 TFVVVDLETTGGRTKSAAGTEPDAITEIGAVKVRGGVVLGEFATLIDPQRSIPPQVVRLT 88
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GITT MV D P ++ ++P+ L + + Q G +L VAHNA FD+ FL RC
Sbjct: 89 GITTAMVS--DAPTIDAVLPMFLEFARLDQ---GAVL-VAHNA-GFDIGFLRAAAQRCDI 141
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNC 294
P + T+ LAR ++ PS V L +L + + HRA+ D V+
Sbjct: 142 AWPRPQVLC-TVRLARRVLSR--EEAPS-VRLASLARLFAV-TTQPTHRALDDARATVDV 196
Query: 295 LSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L +++R+ + DL R + P + P +++K L
Sbjct: 197 LHALIERVGNQGVHTYADL--RSYLPD--VAPAQRRKRVLADG 235
>gi|402817514|ref|ZP_10867102.1| DNA polymerase III polC-type [Paenibacillus alvei DSM 29]
gi|402505036|gb|EJW15563.1| DNA polymerase III polC-type [Paenibacillus alvei DSM 29]
Length = 1457
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 20/180 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLL-GGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
VFDIETTG S N +IIEIA + G E + T VNP ++P + IT +MV
Sbjct: 442 VFDIETTGLSVTNNKIIEIAAVKMQEGKEIDRYSTFVNPHVRIPYNIQQLTNITDEMVA- 500
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
+ P +E+++P + + + + VAHNAR FD+ F+ + + NN + +
Sbjct: 501 -EAPDVEEVLPKFVEFAQDS-------ILVAHNAR-FDIGFIQHNLKLMNLSEMNNPV-L 550
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLK 307
DTL LAR L + ++ L L + Y + L + HRA+ D L +L L D +
Sbjct: 551 DTLELARLLHPTLKNH-----RLNTLADKYKVSL-ENHHRAIDDTIALGGVLNGLLQDAQ 604
>gi|228916455|ref|ZP_04080021.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843034|gb|EEM88116.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 1433
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 96/201 (47%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ K +K G VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEVF-------KKFEKWMGDHTLVAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|333375821|ref|ZP_08467621.1| DNA polymerase III, epsilon subunit [Kingella kingae ATCC 23330]
gi|332969609|gb|EGK08627.1| DNA polymerase III, epsilon subunit [Kingella kingae ATCC 23330]
Length = 463
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 20/174 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
++ D+ETTG +RI E+AF G+ LVNP++++ + GI MV +
Sbjct: 29 VILDLETTGGHFVQDRITEVAFLRFWQGDVQRVSYLVNPQKEISPFVQKLTGIDNQMVRR 88
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
P + ++P LL ++ LF+AHN+R FD F NE R L +
Sbjct: 89 --APALAKILPDLLPLLRG-------ALFIAHNSR-FDYTFWRNECQRAGVAFAA--LTL 136
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
++ L+R+L K SL ++ E G+ +V S HRAMADV+ L+ LQ+
Sbjct: 137 CSVQLSRKLYPQY-----HKHSLDSIIERNGL-IVPSRHRAMADVDALAQFLQQ 184
>gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
haemolysans ATCC 10379]
gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
haemolysans ATCC 10379]
Length = 1449
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 89/181 (49%), Gaps = 19/181 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLL-GGENSTFQTLVNPKRQVPN--AHVHGIT 181
K T +VFD+ETTG S E +R+IEIA + G E +F++ +NP+R + + IT
Sbjct: 425 KDATYVVFDVETTGLSAERDRLIEIAAVKVKNGAEIDSFESYINPQRPISELITRLTSIT 484
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
D V D P ++++ +++ + VAHNA+ FD+ FL F R E
Sbjct: 485 NDDV--KDAPLEKEVMTNFYNWLDKDD------ILVAHNAK-FDLGFLDTCFERLGLENK 535
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
NN +DTL ++R K + L L + Y + LV HRA+ D + I +
Sbjct: 536 NN-ASIDTLFVSRAENKEA-----KRHGLSNLAKLYKVRLV-QHHRAIYDTKATAEIFVK 588
Query: 302 L 302
+
Sbjct: 589 M 589
>gi|393763994|ref|ZP_10352607.1| DNA polymerase III subunit epsilon [Alishewanella agri BL06]
gi|392605308|gb|EIW88206.1| DNA polymerase III subunit epsilon [Alishewanella agri BL06]
Length = 749
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 25/176 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D+ETTG +R+IEI + GE TF TL+NP R +P+ + + GI+ MV
Sbjct: 585 VVLDVETTGGKAGTDRVIEIGAVKVQAGEVLDTFSTLLNPGRTIPSFISRLTGISNAMVA 644
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC--SYEVPNNW 244
D P D+ L +++ +FVAHNA+ FD F+ EF+RC ++++P
Sbjct: 645 --DAPTFTDIATKLADFLQG-------AVFVAHNAK-FDYGFIRAEFARCDITFDMPQ-- 692
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
+ T+ R S SL L E + I L + HRA+AD + +L+
Sbjct: 693 --LCTVVNMRRYYPGLAS-----YSLGKLCEEFEINL-NNHHRALADATATAELLK 740
>gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4]
gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264]
Length = 379
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 84/173 (48%), Gaps = 22/173 (12%)
Query: 133 DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDV 190
D+ETTG S RI EI + ST+ TLV+P++ +P + GIT MV
Sbjct: 19 DLETTGGSAVEHRITEIGVVVVNANHVSTWTTLVDPQQPIPPFIQQLTGITDAMVRG--A 76
Query: 191 PRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTL 250
P D+ P LL + + LFVAHNA SFD FL EF R V N + T+
Sbjct: 77 PTFADIAPALLERLDGK-------LFVAHNA-SFDRGFLRAEFERAG--VAFNPDVLCTV 126
Query: 251 TLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLILQRL 302
L+R L S+ L AL E + LV SA HRA+AD + + Q+L
Sbjct: 127 RLSRALFPR-----ESRHGLDALIERHA--LVPSARHRALADADLIWQFWQKL 172
>gi|387875533|ref|YP_006305837.1| hypothetical protein W7S_10695 [Mycobacterium sp. MOTT36Y]
gi|386788991|gb|AFJ35110.1| hypothetical protein W7S_10695 [Mycobacterium sp. MOTT36Y]
Length = 620
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 29/223 (13%)
Query: 128 TAIVFDIETTG------FSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH-- 178
T +V D+ETTG E + I EI + GG F TL++P+R +P V
Sbjct: 16 TFVVVDLETTGGRTKSAAGTEPDAITEIGAVKVRGGVVLGEFATLIDPQRSIPPQVVRLT 75
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GITT MV D P ++ ++P+ L + + Q G +L VAHNA FD+ FL RC
Sbjct: 76 GITTAMVS--DAPTIDAVLPMFLEFARLDQ---GAVL-VAHNA-GFDIGFLRAAAQRCDI 128
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNC 294
P + T+ LAR ++ PS V L +L + + HRA+ D V+
Sbjct: 129 AWPRPQVLC-TVRLARRVLSR--EEAPS-VRLASLARLFAV-TTQPTHRALDDARATVDV 183
Query: 295 LSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L +++R+ + DL R + P + P +++K L
Sbjct: 184 LHALIERVGNQGVHTYADL--RSYLPD--VAPAQRRKRVLADG 222
>gi|330469366|ref|YP_004407109.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
AB-18-032]
gi|328812337|gb|AEB46509.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
AB-18-032]
Length = 584
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 93/213 (43%), Gaps = 18/213 (8%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG + + I EI + GGE TLVNP +P + GIT M
Sbjct: 31 TFVVVDLETTGGAPDGGGITEIGAVKVRGGEELGVLATLVNPGVPIPPFITVLTGITEAM 90
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ P +E ++P L +V + VAHNA +DV FL +R Y PN
Sbjct: 91 LLP--APSIEQVLPSFLEFVSD-------AVLVAHNA-PYDVGFLKAACARHGYRWPNPR 140
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DT LAR ++ +P++ L L Y+ + HRA+ D +L L
Sbjct: 141 V-LDTAALARRVLLR--DEVPNR-KLGTLAAYFRAATTPT-HRALDDARATVDVLHGLIG 195
Query: 305 DLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L D I + + P +++K L
Sbjct: 196 RLGGHRVDTIGEAIEFARAVTPTQRRKRHLADG 228
>gi|375308264|ref|ZP_09773550.1| DNA polymerase III polC-type (PolIII) [Paenibacillus sp. Aloe-11]
gi|375079688|gb|EHS57910.1| DNA polymerase III polC-type (PolIII) [Paenibacillus sp. Aloe-11]
Length = 1438
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 95/198 (47%), Gaps = 21/198 (10%)
Query: 112 DIEQIIAENKDLA-KLVTAIVFDIETTGFSRENERIIEIAFQDLL-GGENSTFQTLVNPK 169
D +++ + + L+ K T +VFDIETTG S +IIEIA + G E + T VNP
Sbjct: 403 DAVEVVMQAQSLSLKTATYVVFDIETTGLSVTQNKIIEIAAVKMYEGKEIDRYATFVNPH 462
Query: 170 RQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVP 227
++P + I +MV D P +E ++ + +V G + VAHNAR FDV
Sbjct: 463 ERIPYNIQQLTNINDEMV--KDAPDVEPVMKEFVDFV-------GDAVLVAHNAR-FDVG 512
Query: 228 FLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHR 287
F+ + N + +DTL LAR L + ++ L L Y + L S HR
Sbjct: 513 FIQAMLRKMGLPEMTNPV-LDTLELARLLFPTLKNH-----RLNTLTAKYKVAL-ESHHR 565
Query: 288 AMADVNCLSLILQRLTFD 305
A+ D L+ +L L D
Sbjct: 566 AIDDTVALAEVLNGLLSD 583
>gi|379754261|ref|YP_005342933.1| hypothetical protein OCO_22490 [Mycobacterium intracellulare
MOTT-02]
gi|378804477|gb|AFC48612.1| hypothetical protein OCO_22490 [Mycobacterium intracellulare
MOTT-02]
Length = 620
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 29/223 (13%)
Query: 128 TAIVFDIETTG------FSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH-- 178
T +V D+ETTG E + I EI + GG F TL++P+R +P V
Sbjct: 16 TFVVVDLETTGGRTKSAAGTEPDAITEIGAVKVRGGVVLGEFATLIDPQRSIPPQVVRLT 75
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GITT MV D P ++ ++P+ L + + Q G +L VAHNA FD+ FL RC
Sbjct: 76 GITTAMVS--DAPTIDAVLPMFLEFARLDQ---GAVL-VAHNA-GFDIGFLRAAAQRCDI 128
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNC 294
P + T+ LAR ++ PS V L +L + + HRA+ D V+
Sbjct: 129 AWPRPQVLC-TVRLARRVLSR--EEAPS-VRLASLARLFAV-TTQPTHRALDDARATVDV 183
Query: 295 LSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L +++R+ + DL R + P + P +++K L
Sbjct: 184 LHALIERVGNQGVHTYADL--RSYLPD--VAPAQRRKRVLADG 222
>gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH]
Length = 379
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 84/173 (48%), Gaps = 22/173 (12%)
Query: 133 DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDV 190
D+ETTG S RI EI + ST+ TLV+P++ +P + GIT MV
Sbjct: 19 DLETTGGSAVEHRITEIGVVVVNANHVSTWTTLVDPQQPIPPFIQQLTGITDAMVRG--A 76
Query: 191 PRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTL 250
P D+ P LL + + LFVAHNA SFD FL EF R V N + T+
Sbjct: 77 PTFADIAPALLERLDGK-------LFVAHNA-SFDRGFLRAEFERAG--VAFNPDVLCTV 126
Query: 251 TLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLILQRL 302
L+R L S+ L AL E + LV SA HRA+AD + + Q+L
Sbjct: 127 RLSRALFPR-----ESRHGLDALIERHA--LVPSARHRALADADLIWQFWQKL 172
>gi|431792843|ref|YP_007219748.1| DNA polymerase III subunit alpha [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430783069|gb|AGA68352.1| DNA polymerase III, alpha chain [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 1463
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 95/193 (49%), Gaps = 25/193 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T V D+ETTGFS E+I EI + G+ F VNP++ +P + IT DM
Sbjct: 439 TYCVLDLETTGFSAVTEKITEIGVMKVQAGKVIDQFTCFVNPQKPIPARVVEITHITDDM 498
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V + ++ ++P LL +++ + VAHNA FD+ FL + Y+ N+
Sbjct: 499 VKNAET--IDQVLPKLLDFLEDS-------VLVAHNA-DFDMGFLKHNAKLLGYDF--NY 546
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN----CLSLILQ 300
++DTL LA+EL + L + + GI V AHRA+ DV+ +++L
Sbjct: 547 TYLDTLALAKELFPEYKT-----YKLGRIAKNLGIN-VEVAHRALDDVDTTVKVFNIMLD 600
Query: 301 RLTFDLKLSLCDL 313
+L ++L D+
Sbjct: 601 KLKERGAVTLEDI 613
>gi|229162442|ref|ZP_04290403.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
gi|228620921|gb|EEK77786.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
Length = 315
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLLEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|229179896|ref|ZP_04307242.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W]
gi|228603577|gb|EEK61052.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W]
Length = 315
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLLEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|51892650|ref|YP_075341.1| DNA polymerase III subunit alpha [Symbiobacterium thermophilum IAM
14863]
gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
14863]
Length = 1475
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 87/179 (48%), Gaps = 26/179 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V DIETTGFS + IIE+ GGE +FQ+ V P + VP + IT DM+
Sbjct: 455 VVLDIETTGFSPIGDDIIELGAVRCRGGEIVDSFQSFVRPTKPVPPEVQKLTNITPDML- 513
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY---EVPNN 243
P + + +V G + VAHNA+ FD FL + R Y E N
Sbjct: 514 -EGAPEAAEALRAFFQFV-------GDAIVVAHNAQ-FDYSFL--RYHRQKYLGEEFANP 562
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTLTLAR ++ S+ SL AL + +PLV HRA AD +++L +L
Sbjct: 563 --VLDTLTLARAVLPHMRSH-----SLAALTKELQVPLV-DHHRADADAKTAAMVLMKL 613
>gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
Length = 1480
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 126/270 (46%), Gaps = 42/270 (15%)
Query: 81 HKLKNIKFEATSTTINVNKTEISKIQRIQH-----YDIEQIIAENKDLAKLVTA------ 129
++ KN +A + T + N ++ +++ Y +E + + DL +LVT
Sbjct: 395 NQAKNWGMDAIAITDHGNIQGFTEASHVKNPPKIIYGVEGYLVD--DLKELVTNPMDKTL 452
Query: 130 ----IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITT 182
IVFDIETTGFS +N+ I EI ++ GE F T VNP+R +P + I+
Sbjct: 453 DDGFIVFDIETTGFSAKNDAITEIGAVKVVKGEIVDRFSTFVNPRRPIPFKIEELTHISD 512
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
MV + P +ED++P L + + YI+ VAHNA FD F+ + + E
Sbjct: 513 AMVM--NAPFIEDILPKFLDFCED------YII-VAHNA-GFDTGFIRENAKKINKEY-- 560
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLI---- 298
N +DT+ +AR L+ ++ L + + I L G HRA+ D + I
Sbjct: 561 NPSIIDTVAMARLLLPE-----LNRFKLDTVCKALNISLEGH-HRAVNDAEATAQIWVEF 614
Query: 299 LQRLTFDLKLSLCDLIERGFTPSDLINPKK 328
++RL L ++ G T +D++ K
Sbjct: 615 IKRLKDKGISKLSEVASLGETNADIVKKTK 644
>gi|349701361|ref|ZP_08902990.1| DNA polymerase III, epsilon subunit [Gluconacetobacter europaeus
LMG 18494]
Length = 226
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 130 IVFDIETTGFSR-ENERIIEIAFQDLLGG--ENSTFQTLVNPKRQVPN--AHVHGIT-TD 183
I+FD ETTG + +R+IEIA +L+G +F+ L++P+R VP + VHG T D
Sbjct: 5 ILFDTETTGLDPLKGDRVIEIAALELVGDLPTGRSFRVLIDPERDVPEEASRVHGFTRAD 64
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
+ KP + + P L ++ G +AHNAR FD FL E +R +
Sbjct: 65 LEGKP---KFAQVAPEFLEFI-------GNDPLIAHNAR-FDFGFLNAELARARLPELDM 113
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQRL 302
+DTL +ARE +P+ SL AL + I L + H A+ D L+ + L
Sbjct: 114 GRMVDTLDMARERF----PGMPN--SLDALCRRFSIDLSERTTHNALLDCRLLAAVYLEL 167
Query: 303 T 303
T
Sbjct: 168 T 168
>gi|421478102|ref|ZP_15925872.1| exonuclease [Burkholderia multivorans CF2]
gi|400225249|gb|EJO55426.1| exonuclease [Burkholderia multivorans CF2]
Length = 375
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 20/168 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG + RI EI ++ ST+ TLVNP + +P + GI+ MV
Sbjct: 16 VFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVR- 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P +L P L + S+ LFVAHNA SFD FL EF R + N +
Sbjct: 75 -DAPSFAELAPALFERLDSK-------LFVAHNA-SFDRGFLRAEFERAGFAF--NPDVL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL 295
T+ L+R L S+ L AL +G+ + + HRA+AD + L
Sbjct: 124 CTVRLSRALFPR-----ESRHGLDALIARHGL-VPAARHRALADADLL 165
>gi|393723047|ref|ZP_10342974.1| DNA polymerase III subunit epsilon [Sphingomonas sp. PAMC 26605]
Length = 230
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 91/189 (48%), Gaps = 26/189 (13%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLGGENS--TFQTLVNPKRQVP--NAHVHGITTDM 184
IVFD ETTGFS + +R++EI +++ + TF +P+R +P VHG++
Sbjct: 4 IVFDTETTGFSFSDGDRMVEIGCLEMVNKVETGRTFHAYFHPERSMPAEAQRVHGLSDAF 63
Query: 185 VC-KP-DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
+ KP V R+EDL+ + G VAHNA SFD FL E RC
Sbjct: 64 LADKPLFVQRVEDLLDFI-----------GDSPLVAHNA-SFDFGFLNGELQRCGRATVA 111
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQR 301
+DT+ +AR M+ G +K SL AL YGI + H A+ D LS +
Sbjct: 112 MHRMVDTVAMAR--MRHPG----AKHSLDALCNRYGIDRSHRTVHGALLDAQLLSQVYVE 165
Query: 302 LTFDLKLSL 310
LT ++ L
Sbjct: 166 LTGGRQIGL 174
>gi|404444197|ref|ZP_11009358.1| hypothetical protein MVAC_13261 [Mycobacterium vaccae ATCC 25954]
gi|403654271|gb|EJZ09203.1| hypothetical protein MVAC_13261 [Mycobacterium vaccae ATCC 25954]
Length = 617
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 101/218 (46%), Gaps = 29/218 (13%)
Query: 128 TAIVFDIETTGFSRENER---IIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GIT 181
T +V D+ETTG ER I EI + GGE F TLV+P R +P V GIT
Sbjct: 21 TFVVVDLETTGGRASGERHDEITEIGAVKVRGGEVLGEFATLVDPGRAIPPQIVALTGIT 80
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
T MV D PR+E ++P L + + + VAHNA FD+ FL R P
Sbjct: 81 TAMVY--DAPRIEAVLPAFLEFCRG-------AVLVAHNA-GFDIGFLRAAAERHHLPWP 130
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSL 297
+ T+TLAR ++ PS V L AL + + + HRA+ D V+ L
Sbjct: 131 KPPVLC-TVTLARRVLTR--DEAPS-VRLSALAQLFRAGTTPT-HRALDDARATVDVLHG 185
Query: 298 ILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLV 335
+++R+ + +L R + P + P ++ K L
Sbjct: 186 LIERVGNQGVHTYAEL--RSYLPD--VTPAQRSKRHLA 219
>gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720 [Saccharomonospora viridis DSM
43017]
gi|256584995|gb|ACU96128.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora viridis DSM 43017]
Length = 570
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 96/207 (46%), Gaps = 30/207 (14%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTD 183
VT +V D+ETTG + + I EI + GGE F TLV+P +P V GIT
Sbjct: 15 VTFVVVDLETTGVTPDGAGITEIGAVKVRGGEVVGEFATLVDPGVPIPPQIVALTGITPA 74
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV PR+E ++P L +V + VAHNA FDV FL YE P
Sbjct: 75 MVRS--APRIEQVLPTFLEFVSG-------AVLVAHNA-GFDVSFLKAACQTHGYEWPKP 124
Query: 244 WLFMDTLTLARELM---KSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLS 296
+ TL LAR ++ ++ G L + SL R HRA+ D V+ L
Sbjct: 125 TVVC-TLKLARRVLGRQETRGHRLSTLASLFGARST-------PKHRALDDAKATVDVLH 176
Query: 297 LILQRLTFDLKLSLCDLIE--RGFTPS 321
+L+R+ SL +L++ R TP+
Sbjct: 177 GLLERVGPLGVQSLEELLDYLRAVTPA 203
>gi|337750008|ref|YP_004644170.1| protein PolC [Paenibacillus mucilaginosus KNP414]
gi|386725636|ref|YP_006191962.1| protein PolC [Paenibacillus mucilaginosus K02]
gi|336301197|gb|AEI44300.1| PolC [Paenibacillus mucilaginosus KNP414]
gi|384092761|gb|AFH64197.1| PolC [Paenibacillus mucilaginosus K02]
Length = 1436
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 99/205 (48%), Gaps = 29/205 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLL-GGENSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVFDIETTG S + +IIEIA + G E F T V+P ++P + IT +MV
Sbjct: 423 IVFDIETTGLSVTSNKIIEIAGVRMKEGKEIDRFSTFVDPHERIPYNIQQLTNITDEMV- 481
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY-EVPNNWL 245
P +E+++P + ++ G + VAHNAR FD+ F+ R EV N L
Sbjct: 482 -RGAPTIEEVLPQFVEFI-------GDSVLVAHNAR-FDIGFIQANCKRLGLPEVKNPVL 532
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
DTL LAR LM + ++ L L + + + L + HRA+ D L +L L
Sbjct: 533 --DTLELARLLMPTLKNH-----RLNTLADKFKVSL-ENHHRAIDDSIALGYVLFHL--- 581
Query: 306 LKLSLCDLIERGFTPSDLINPKKKK 330
L D E G+T +N + K
Sbjct: 582 ----LKDAAEVGYTQLHQLNDQVGK 602
>gi|291287762|ref|YP_003504578.1| DNA polymerase III subunit epsilon [Denitrovibrio acetiphilus DSM
12809]
gi|290884922|gb|ADD68622.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
12809]
Length = 205
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 94/183 (51%), Gaps = 26/183 (14%)
Query: 127 VTAIVFDIETTGFSRE-NERIIEIAFQDLLGG----ENSTFQTLVNPKRQVP-NAH-VHG 179
+T VFD ETTG S + R++EI + G +F TL+NPK +P NA+ VHG
Sbjct: 9 LTFTVFDTETTGMSPDKGARLLEIGAVKVKPGLVLDLQDSFCTLINPKAPIPYNAYSVHG 68
Query: 180 ITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
I+T MV D P ++D++P + ++ + AHNAR FD F+ + + C
Sbjct: 69 ISTAMVA--DKPEIKDVLPGFFSFTENT-------IIAAHNAR-FDCSFVSHHSAECCIV 118
Query: 240 VPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYG--IPLVGSA-HRAMADVNCLS 296
P + +DT+ LA KS S L S SL L Y+ IPL + HRA+ D +
Sbjct: 119 NPMTKI-VDTVKLA----KSAHSGLKS-YSLGNLIHYFSMDIPLPDTYRHRALYDAAHTA 172
Query: 297 LIL 299
L+L
Sbjct: 173 LLL 175
>gi|297544667|ref|YP_003676969.1| DNA polymerase III subunit alpha [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 1406
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 84/172 (48%), Gaps = 21/172 (12%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
VFDIETTG S N+ IIEI + G+ TF+T VNPK + + + GI MV
Sbjct: 395 VFDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESMV-- 452
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P +E+++P L + + + VAHNA +FDV F+ ++ + + V N L
Sbjct: 453 KDAPSIEEILPKFLEFSSNS-------VLVAHNA-NFDVSFIKSKAKKFNLNVNNTVL-- 502
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
DTL L+R L K L L E+ + L HRA+ D + I
Sbjct: 503 DTLELSRHLYKD-----LKNYKLDTLAEHLQVKL-EHHHRAVDDARATAEIF 548
>gi|392940949|ref|ZP_10306593.1| DNA polymerase III, alpha chain [Thermoanaerobacter siderophilus
SR4]
gi|392292699|gb|EIW01143.1| DNA polymerase III, alpha chain [Thermoanaerobacter siderophilus
SR4]
Length = 1407
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 21/180 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
VFDIETTG S N+ IIEI + G+ TF+T VNPK + + + GI MV
Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESMV-- 453
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P +E+++P L + + + VAHNA +FDV F+ ++ + + V N L
Sbjct: 454 KDAPSIEEILPKFLEFASNS-------VLVAHNA-NFDVSFIKSKAKKFNLNVNNAVL-- 503
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLK 307
DTL L+R L K L L ++ + L HRA+ D + I ++ LK
Sbjct: 504 DTLELSRHLYKD-----LKNYKLDTLADHLQVKL-EHHHRAVDDAMATAEIFKKTIDRLK 557
>gi|376267714|ref|YP_005120426.1| DNA polymerase III subunit alpha [Bacillus cereus F837/76]
gi|364513514|gb|AEW56913.1| DNA polymerase III alpha subunit [Bacillus cereus F837/76]
Length = 970
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|345019855|ref|ZP_08783468.1| DNA-directed DNA polymerase III alpha chain [Ornithinibacillus
scapharcae TW25]
Length = 1442
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 86/180 (47%), Gaps = 20/180 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTD 183
T +VFD+ETTG S + IIE+A + GE F+ NP + + GIT +
Sbjct: 413 ATYVVFDVETTGLSAVYDTIIELAAVKIHQGEIVDRFEAFANPHHPLSQTTIDLTGITDE 472
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV D P +E+++ K G +FVAHNA SFD+ FL + + YE N
Sbjct: 473 MV--KDAPDIEEVL-------KDFHSWSGDSVFVAHNA-SFDIGFLNQGYQKIGYEKVEN 522
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+ +DTL LAR L+ ++ L L ++ I L HRA+ D +L +L
Sbjct: 523 PV-VDTLELARFLLPELKNH-----RLNTLCKHLDIELT-QHHRAIYDAEATGYLLWKLV 575
>gi|384181631|ref|YP_005567393.1| DNA polymerase III subunit alpha, Gram-positive type, partial
[Bacillus thuringiensis serovar finitimus YBT-020]
gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 970
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|381400299|ref|ZP_09925275.1| DNA polymerase III subunit [Kingella kingae PYKK081]
gi|380834686|gb|EIC14515.1| DNA polymerase III subunit [Kingella kingae PYKK081]
Length = 463
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 20/174 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
++ D+ETTG +RI E+AF G+ LVNP++++ + GI MV +
Sbjct: 29 VILDLETTGGHFVQDRITEVAFLRFWQGDVQRVSYLVNPQKEISPFVQKLTGIDNQMVRR 88
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
P + ++P LL ++ LF+AHN+R FD F NE R L +
Sbjct: 89 --APALAKILPDLLPLLRG-------ALFIAHNSR-FDYTFWRNECRRAGVAFAA--LTL 136
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
++ L+R+L K SL ++ E G+ +V S HRAMADV+ L+ LQ+
Sbjct: 137 CSVQLSRKLYPQY-----HKHSLDSIIERNGL-IVPSRHRAMADVDALAQFLQQ 184
>gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9]
gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9]
Length = 1406
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 84/172 (48%), Gaps = 21/172 (12%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
VFDIETTG S N+ IIEI + G+ TF+T VNPK + + + GI MV
Sbjct: 395 VFDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESMV-- 452
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P +E+++P L + + + VAHNA +FDV F+ ++ + + V N L
Sbjct: 453 KDAPSIEEILPKFLEFSSNS-------VLVAHNA-NFDVSFIKSKAKKFNLNVNNTVL-- 502
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
DTL L+R L K L L E+ + L HRA+ D + I
Sbjct: 503 DTLELSRHLYKD-----LKNYKLDTLAEHLQVKL-EHHHRAVDDARATAEIF 548
>gi|226941443|ref|YP_002796517.1| DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9]
gi|226716370|gb|ACO75508.1| Probable DNA-directed DNA polymerase III [Laribacter hongkongensis
HLHK9]
Length = 493
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 85/180 (47%), Gaps = 20/180 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
++ D+ETTG +RI EI ++ G + + LVNP + +P + GI+ MV
Sbjct: 7 VIVDLETTGGHITRDRITEIGLVEVSHGVTTRWSQLVNPGQPIPPFIEEMTGISDAMVA- 65
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
+ P +L P LL + + L +AHNAR FD FL NEF R + L
Sbjct: 66 -EAPPFAELAPALLARLNGK-------LLIAHNAR-FDYGFLKNEFRRLGLTFTTDPLC- 115
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPL-VGSAHRAMADVNCLSLILQRLTFDL 306
T+ L+R L +K SL +L +GI + G HRA+ D + + LQ +L
Sbjct: 116 -TVKLSRRLYPQH-----AKHSLDSLIARHGIDVPPGMRHRALGDAEAVYVFLQTAVAEL 169
>gi|335038950|ref|ZP_08532144.1| DNA polymerase III polC-type [Caldalkalibacillus thermarum TA2.A1]
gi|334181149|gb|EGL83720.1| DNA polymerase III polC-type [Caldalkalibacillus thermarum TA2.A1]
Length = 1433
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 94/204 (46%), Gaps = 28/204 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S +IIE+A + GE F NP + + V GIT DM
Sbjct: 419 TYVVFDVETTGLSAVYNKIIELAAVKIRNGEVIDKFSEFANPHEPLTDQIVKLTGITDDM 478
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P +ED++ +V G VAHNA SFD+ FL + + E+ N
Sbjct: 479 L--KDAPEIEDVLRRFYDFV-------GDATLVAHNA-SFDMGFLQVGYKKLGLELNNA- 527
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DTL LAR L ++ L L + + I LV + HRA+ D +L ++
Sbjct: 528 -VIDTLELARFLYPDLKNH-----RLNTLCKLFNIELV-NHHRAVYDAEATGYLLWKM-- 578
Query: 305 DLKLSLCDLIERGFTPSDLINPKK 328
+ D ER T D +N K
Sbjct: 579 -----ISDCQEREITQLDQLNEYK 597
>gi|167040287|ref|YP_001663272.1| DNA polymerase III PolC [Thermoanaerobacter sp. X514]
gi|300914371|ref|ZP_07131687.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
gi|307724393|ref|YP_003904144.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513]
gi|166854527|gb|ABY92936.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514]
gi|300889306|gb|EFK84452.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
gi|307581454|gb|ADN54853.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513]
Length = 1407
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 84/172 (48%), Gaps = 21/172 (12%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
VFDIETTG S N+ IIEI + G+ TF+T VNPK + + + GI MV
Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESMV-- 453
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P +E+++P L + + + VAHNA +FDV F+ ++ + + V N L
Sbjct: 454 KDAPSIEEILPKFLEFASNS-------VLVAHNA-NFDVSFIKSKAKKFNLNVNNAVL-- 503
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
DTL L+R L K L L E+ + L HRA+ D + I
Sbjct: 504 DTLELSRHLYKD-----LKNYKLDTLAEHLQVKL-EHHHRAVDDAMATAEIF 549
>gi|196044660|ref|ZP_03111895.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
gi|225865799|ref|YP_002751177.1| DNA polymerase III, PolC-type, partial [Bacillus cereus 03BB102]
gi|229186057|ref|ZP_04313227.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
gi|196024695|gb|EDX63367.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
gi|225786021|gb|ACO26238.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
gi|228597476|gb|EEK55126.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
Length = 970
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|421867266|ref|ZP_16298925.1| DNA polymerase III epsilon subunit [Burkholderia cenocepacia H111]
gi|358072680|emb|CCE49803.1| DNA polymerase III epsilon subunit [Burkholderia cenocepacia H111]
Length = 375
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 20/175 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG S + RI EI ++ ST+ +LVNP + +P + GI+ MV
Sbjct: 16 VFVDLETTGGSSADHRITEIGVVEIGPLGVSTWTSLVNPGQAIPPFIQQLTGISDAMVR- 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P L P L + + LFVAHNA SFD FL EF R + +
Sbjct: 75 -DAPTFASLAPALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAGLAFNPD--VL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
T+ L+R L S+ L AL E +G+ + + HRA+AD + L ++L
Sbjct: 124 CTVRLSRALFPR-----ESRHGLDALIERHGL-VPAARHRALADADLLWQFWRQL 172
>gi|256750786|ref|ZP_05491671.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
CCSD1]
gi|256750369|gb|EEU63388.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
CCSD1]
Length = 1407
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 84/172 (48%), Gaps = 21/172 (12%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
VFDIETTG S N+ IIEI + G+ TF+T VNPK + + + GI MV
Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESMV-- 453
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P +E+++P L + + + VAHNA +FDV F+ ++ + + V N L
Sbjct: 454 KDAPSIEEILPKFLEFASNS-------VLVAHNA-NFDVSFIKSKAKKFNLNVNNAVL-- 503
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
DTL L+R L K L L E+ + L HRA+ D + I
Sbjct: 504 DTLELSRHLYKD-----LKNYKLDTLAEHLQVKL-EHHHRAVDDAMATAEIF 549
>gi|300813717|ref|ZP_07094037.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300512174|gb|EFK39354.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 1415
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 21/194 (10%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGG-ENSTFQTLVNPKR 170
D E I+ + T +VFDIETTG S ++I EI ++ G F L+NP+
Sbjct: 384 DEEDIVINYNENKSYNTYVVFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQLINPQM 443
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + IT +V + P +E++ P ++K + VAHNA+ FD F
Sbjct: 444 LIPEKVQELTRITNALV--ENEPTIEEVAPKFYDFIKDS-------VLVAHNAK-FDTAF 493
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ F + N L DTL+ AR +K K +L L + +G+ LVG AHRA
Sbjct: 494 IRRVFKENDLDFINPIL--DTLSFARATVKD-----TKKFNLATLCKKFGVSLVG-AHRA 545
Query: 289 MADVNCLSLILQRL 302
+ D + + +L
Sbjct: 546 VNDAEATAHLFIKL 559
>gi|418050452|ref|ZP_12688538.1| DNA polymerase III, epsilon subunit [Mycobacterium rhodesiae JS60]
gi|353188076|gb|EHB53597.1| DNA polymerase III, epsilon subunit [Mycobacterium rhodesiae JS60]
Length = 614
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 106/221 (47%), Gaps = 39/221 (17%)
Query: 128 TAIVFDIETTG----FSRENER--IIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH-- 178
T +V D+ETTG S + R I EI + GGE F TLV+P+R +P V
Sbjct: 20 TFVVVDLETTGGRATASADGSRDAITEIGAVKVRGGEVLGEFATLVDPQRSIPPQIVRLT 79
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GITT MV D P + ++P+ L + + + VAHNA FD+ FL + +C
Sbjct: 80 GITTAMVH--DAPTIAAVLPMFLEFARG-------AVLVAHNA-GFDIGFLRSAAEQCGI 129
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA----HRAMAD--- 291
P + T+ LAR ++ PS V L L LVGSA HRA+ D
Sbjct: 130 SWPRPPVLC-TVKLARRVLTR--EEAPS-VRLATLAA-----LVGSATQPTHRALDDARA 180
Query: 292 -VNCLSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKK 331
V+ L +++R+ + DL RG+ P ++ N ++ K+
Sbjct: 181 TVDVLHALIERVGNQGVHTYTDL--RGYLP-NISNAQRGKR 218
>gi|254821932|ref|ZP_05226933.1| hypothetical protein MintA_18512 [Mycobacterium intracellulare ATCC
13950]
Length = 323
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 29/223 (13%)
Query: 128 TAIVFDIETTG------FSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH-- 178
T +V D+ETTG E + I EI + GG F TL++P+R +P V
Sbjct: 16 TFVVVDLETTGGRTKSAAGTEPDAITEIGAVKVRGGVVLGEFATLIDPQRSIPPQVVRLT 75
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GITT MV D P ++ ++P+ L + + Q G +L VAHNA FD+ FL RC
Sbjct: 76 GITTAMVS--DAPTIDAVLPMFLEFARLDQ---GAVL-VAHNA-GFDIGFLRAAAQRCDI 128
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNC 294
P + T+ LAR ++ PS V L +L + + HRA+ D V+
Sbjct: 129 AWPRPQVLC-TVRLARRVLSR--EEAPS-VRLASLARLFAV-TTQPTHRALDDARATVDV 183
Query: 295 LSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L +++R+ + DL R + P + P +++K L
Sbjct: 184 LHALIERVGNQGVHTYADL--RSYLPD--VAPAQRRKRVLADG 222
>gi|118479040|ref|YP_896191.1| DNA polymerase III subunit alpha, partial [Bacillus thuringiensis
str. Al Hakam]
gi|118418265|gb|ABK86684.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
Hakam]
Length = 972
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 419 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 478
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 479 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 528
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 529 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 579
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 580 -----LKDVIEKGFEYHDQLN 595
>gi|405979927|ref|ZP_11038268.1| exonuclease, DNA polymerase III, epsilon subunit [Actinomyces
turicensis ACS-279-V-Col4]
gi|404391302|gb|EJZ86366.1| exonuclease, DNA polymerase III, epsilon subunit [Actinomyces
turicensis ACS-279-V-Col4]
Length = 257
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 92/182 (50%), Gaps = 21/182 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG +++ I EI + GG+ STFQ++VNP R +P + GIT +
Sbjct: 64 TYVVVDLETTGLGNDDQ-ITEIGALKVRGGQVLSTFQSMVNPLRPIPKIVTTLTGITDED 122
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V P ++ ++P L ++ +FVA + FD FL+ R + W
Sbjct: 123 VEG--APTVDQVLPQFLTWIDDGDPAQ---VFVAQHV-PFDRGFLL----RACQQTGLKW 172
Query: 245 L---FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ DTLTLAR L+ +PS L AL +Y+ P+V AHRA+AD +L
Sbjct: 173 RPLPYFDTLTLARILLPK--PEVPSH-RLGALADYFDAPVV-EAHRALADSYMTLHVLDG 228
Query: 302 LT 303
LT
Sbjct: 229 LT 230
>gi|398012052|ref|XP_003859220.1| mitochondrial DNA polymerase I protein B, putative [Leishmania
donovani]
gi|322497434|emb|CBZ32508.1| mitochondrial DNA polymerase I protein B, putative [Leishmania
donovani]
Length = 1430
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 90/205 (43%), Gaps = 23/205 (11%)
Query: 114 EQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVP 173
+ I A+ K + FDIETTG + + I+E+A D + ENSTF TLVNP+R +
Sbjct: 750 QHIEAQGSQKLKTYRIVFFDIETTGLNPSTDAIVEVAMFDPI--ENSTFHTLVNPQRSIT 807
Query: 174 --NAHVHGITTDMVCKPDVPRMEDLIPILLHYV---KSRQKPGGYILFVAHNARSFDVPF 228
+H IT MV D P ++ + + Y+ K+ P ++ V HN S D P
Sbjct: 808 PRTVGIHHITNAMV--RDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPM 865
Query: 229 LINEFSRCSYEVP-NNWLFMDTLTL-------ARELMKSGGSNLP------SKVSLQALR 274
L + E + LF D+L L R M++ +N P S + L L
Sbjct: 866 LRRALECHAPECQLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLI 925
Query: 275 EYYGIPLVGSAHRAMADVNCLSLIL 299
+ G HRA D L +L
Sbjct: 926 TALNVRPEGDLHRADTDTKALWYVL 950
>gi|366165988|ref|ZP_09465743.1| DNA polymerase III, alpha subunit, Gram-positive type [Acetivibrio
cellulolyticus CD2]
Length = 1446
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 25/179 (13%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVCK 187
V D+ETTGFS E+I E+ L G+ F VNP++ +P V IT MV
Sbjct: 425 VLDLETTGFSPLTEKITEVGIMKLKDGKVIDQFSCFVNPEKPIPARVVEVTNITDYMV-- 482
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D +E + P +L +++ + VAHNA FD+ FL + Y ++ ++
Sbjct: 483 QDAETIEKVFPKMLEFIEGS-------VLVAHNAE-FDIGFLKHNAKVLGYNF--DFTYL 532
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN----CLSLILQRL 302
DTL+LA+E+ S L + + GI V AHRA+ DV+ +++L++L
Sbjct: 533 DTLSLAKEIFPDYKS-----YKLGRIAKNLGIK-VDVAHRALDDVDTTVKVFNIMLEKL 585
>gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
gi|149753212|gb|EDM63143.1| DNA polymerase III, alpha subunit, Gram-positive type [Dorea
longicatena DSM 13814]
Length = 1513
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 88/184 (47%), Gaps = 23/184 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +VFD+ETTGFS ++IIEI + GE F T VNPK +P + IT M
Sbjct: 469 TYVVFDLETTGFSPIKDKIIEIGAVKVEHGEITDKFSTFVNPKVPIPFQITQLTSITDQM 528
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY-EVPNN 243
V P +E ++P L ++ G VAHNA SFDV F+ C Y ++ +
Sbjct: 529 VIG--APDIETVLPQFLEFI-------GDAALVAHNA-SFDVSFIEQ---NCRYQDIQPD 575
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+ +DT+ +AR L+ + SK L + I L + HRA+ D + I +
Sbjct: 576 FTSVDTVAMARILLPT-----LSKYKLNVVANALHISL-ENHHRAVDDAGATAEIFVKFV 629
Query: 304 FDLK 307
LK
Sbjct: 630 EMLK 633
>gi|83590002|ref|YP_430011.1| DNA polymerase III subunit epsilon [Moorella thermoacetica ATCC
39073]
gi|83572916|gb|ABC19468.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
39073]
Length = 921
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 87/178 (48%), Gaps = 24/178 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTDM 184
T +V D+ETTG +RIIEIA L GG FQTLVNP R +P A + GI+ M
Sbjct: 5 TYVVLDVETTGLDPARDRIIEIAAVRLEGGNITRQFQTLVNPGRPIPPAIERLTGISDAM 64
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V + P + +++P LL + + V HN +FD+ FL N+ + P
Sbjct: 65 VR--EAPPLPEVLPGLLDLFRD-------AIPVGHNG-TFDLAFL-NQALGHGWHSP--- 110
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL L+R L S+ L + +Y + G HRA+ DV + +L+ L
Sbjct: 111 -LLDTLALSRILFPCLASH-----RLDYMSKYLTLEATGH-HRALDDVLTTARLLENL 161
>gi|206561350|ref|YP_002232115.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
gi|444361968|ref|ZP_21162541.1| exonuclease [Burkholderia cenocepacia BC7]
gi|444373881|ref|ZP_21173194.1| exonuclease [Burkholderia cenocepacia K56-2Valvano]
gi|198037392|emb|CAR53327.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
gi|443591041|gb|ELT59973.1| exonuclease [Burkholderia cenocepacia K56-2Valvano]
gi|443597839|gb|ELT66248.1| exonuclease [Burkholderia cenocepacia BC7]
Length = 375
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 20/175 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG S + RI EI ++ ST+ +LVNP + +P + GI+ MV
Sbjct: 16 VFVDLETTGGSSADHRITEIGVVEIGPLGVSTWTSLVNPGQAIPPFIQQLTGISDAMVR- 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P L P L + + LFVAHNA SFD FL EF R + +
Sbjct: 75 -DAPTFASLAPALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAGLTFNPD--VL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
T+ L+R L S+ L AL E +G+ + + HRA+AD + L ++L
Sbjct: 124 CTVRLSRALFPR-----ESRHGLDALIERHGL-VPAARHRALADADLLWQFWRQL 172
>gi|433463495|ref|ZP_20421048.1| DNA polymerase III (gram-positive type) [Halobacillus sp. BAB-2008]
gi|432187495|gb|ELK44780.1| DNA polymerase III (gram-positive type) [Halobacillus sp. BAB-2008]
Length = 1430
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 97/205 (47%), Gaps = 28/205 (13%)
Query: 118 AENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAH 176
A++++L V +VFD+ETTG S ++IIE+A + GGE F++ NP +
Sbjct: 406 AQDRELEDDVY-VVFDVETTGLSAVYDQIIELAGVKVKGGEIIDRFESFANPHHPLSQTT 464
Query: 177 VH--GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFS 234
+ GIT DMV D P + D++ ++ + VAHNA SFD+ FL F
Sbjct: 465 IDLTGITDDMV--RDAPEIGDVLKDFHEWMADD-------ILVAHNA-SFDMGFLNAGFK 514
Query: 235 RCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNC 294
R Y N + +DTL LAR L+ ++ L L + + I L HRA+ D
Sbjct: 515 RIDYGKAKNPV-IDTLELARFLVPELKNH-----RLNTLCKKFDIELT-QHHRAIYDAEA 567
Query: 295 LSLILQRLTFDLKLSLCDLIERGFT 319
+L +L L ERG T
Sbjct: 568 TGYLLWKL-------LKRAFERGIT 585
>gi|404393669|ref|ZP_10985577.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium CM2]
gi|404278800|gb|EJZ44313.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium CM2]
Length = 1402
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 25/183 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS +N+ I EI + E TF L+NPKR +P + GIT ++V
Sbjct: 389 VVFDIETTGFSNKNDAITEIGAVKIKNCEIVGTFSQLINPKRPIPEKIQKLTGITDELVA 448
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P L + + VAHN+ FD F+ S+E N+ F
Sbjct: 449 --DKPFIEEVLPNFLEFCSGS-------VLVAHNS-DFDTGFI----REKSFEQKLNYDF 494
Query: 247 --MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DTL L+R +M ++ L + + I L + HRA+ D + I +
Sbjct: 495 DAIDTLVLSRLIMTELKNH-----KLNTIAKELDISL-ENHHRAVDDATATAHIFLKFIE 548
Query: 305 DLK 307
LK
Sbjct: 549 KLK 551
>gi|393720402|ref|ZP_10340329.1| DNA polymerase III subunit epsilon [Sphingomonas echinoides ATCC
14820]
Length = 229
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 96/203 (47%), Gaps = 23/203 (11%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLGGENS--TFQTLVNPKRQVP--NAHVHGITTDM 184
IVFD ETTGFS + +R++EI +++ + TF +P+R +P VHG++
Sbjct: 4 IVFDTETTGFSFADGDRMVEIGCLEMVNRVETGRTFHAYFHPERSMPPEAQRVHGLSDAF 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P L+ LL ++ G VAHNA SFD FL E RC
Sbjct: 64 LA--DKPLFPHLVDDLLDFI-------GDSPLVAHNA-SFDFGFLNGELKRCGRTTVAME 113
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQRLT 303
+DT+ +AR M+ G +K SL AL YGI + H A+ D L+ + LT
Sbjct: 114 RMVDTVAMAR--MRHPG----AKHSLDALCSRYGIDRSHRTLHGALLDAQLLAQVYVELT 167
Query: 304 FDLKLSLCDLIERGFTPSDLINP 326
++ L L+ S+++ P
Sbjct: 168 GGRQIGLV-LVSEAVEESEVMAP 189
>gi|146080581|ref|XP_001464035.1| putative mitochondrial DNA polymerase I protein B [Leishmania
infantum JPCM5]
gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania
infantum JPCM5]
Length = 1430
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 90/205 (43%), Gaps = 23/205 (11%)
Query: 114 EQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVP 173
+ I A+ K + FDIETTG + + I+E+A D + ENSTF TLVNP+R +
Sbjct: 750 QHIEAQGSQKLKTYRIVFFDIETTGLNPSTDAIVEVAMFDPI--ENSTFHTLVNPQRSIT 807
Query: 174 --NAHVHGITTDMVCKPDVPRMEDLIPILLHYV---KSRQKPGGYILFVAHNARSFDVPF 228
+H IT MV D P ++ + + Y+ K+ P ++ V HN S D P
Sbjct: 808 PRTVGIHHITNAMV--RDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPM 865
Query: 229 LINEFSRCSYEVP-NNWLFMDTLTL-------ARELMKSGGSNLP------SKVSLQALR 274
L + E + LF D+L L R M++ +N P S + L L
Sbjct: 866 LRRALECHAPECQLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLI 925
Query: 275 EYYGIPLVGSAHRAMADVNCLSLIL 299
+ G HRA D L +L
Sbjct: 926 TALNVRPEGDLHRADTDTKALWYVL 950
>gi|423469803|ref|ZP_17446547.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6O-2]
gi|402437882|gb|EJV69903.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6O-2]
Length = 315
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNNV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|453050673|gb|EME98204.1| DNA polymerase III subunit epsilon [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 333
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 18/167 (10%)
Query: 131 VFDIETTGFSRENERIIEIAFQ-DLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPD 189
V D+ETTG +R++ + +Q D G T+ T+VNP+R +HG+T++++ D
Sbjct: 24 VVDVETTGLARDDRIVSAAVYQLDARGRVEDTWYTMVNPRRDPGPVWIHGLTSEVLA--D 81
Query: 190 VPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDT 249
P ED+ + R + VAHNA +FD + E++R E P T
Sbjct: 82 APLFEDVAEEFARRLDGR-------VLVAHNA-AFDWSMIAREYARARAEAPVRQRLC-T 132
Query: 250 LTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
+ L++EL LP+ L++L +YG+ + AH A+ D L+
Sbjct: 133 IALSKELRLP----LPNH-KLESLAAHYGV-VQRQAHHALDDARVLA 173
>gi|282882108|ref|ZP_06290749.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus lacrimalis 315-B]
gi|281298138|gb|EFA90593.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus lacrimalis 315-B]
Length = 1415
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 21/194 (10%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGG-ENSTFQTLVNPKR 170
D E I+ + T +VFDIETTG S ++I EI ++ G F L+NP+
Sbjct: 384 DEEDIVINYNENKSYNTYVVFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQLINPQM 443
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + IT +V + P +E++ P ++K + VAHNA+ FD F
Sbjct: 444 LIPEKVQELTRITNALV--ENEPTIEEVAPKFYDFIKDS-------VLVAHNAK-FDTAF 493
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ F + N L DTL+ AR +K K +L L + +G+ LVG AHRA
Sbjct: 494 IRRVFKENDLDFINPIL--DTLSFARATVKD-----TKKFNLATLCKKFGVSLVG-AHRA 545
Query: 289 MADVNCLSLILQRL 302
+ D + + +L
Sbjct: 546 VNDAEATAHLFIKL 559
>gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella morbillorum M424]
gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella morbillorum M424]
Length = 1446
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLL-GGENSTFQTLVNPKRQVPN--AHVHGITTD 183
T +VFD+ETTG S E +R+IEIA + G E +F++ +NP+R + + IT D
Sbjct: 424 ATYVVFDVETTGLSAERDRLIEIAAVKVKNGAEIDSFESYINPERPISELITRLTSITDD 483
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
V D P ++++ +++ + VAHNA+ FD+ F+ F R E NN
Sbjct: 484 DV--RDAPVEKEVMTDFYNWLDEDD------ILVAHNAK-FDLGFIDKSFERLGLENKNN 534
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL ++R K + L L + Y + LV HRA+ D + I ++
Sbjct: 535 -ASIDTLFISRAENKEA-----KRHGLSNLAKMYKVRLV-QHHRAIYDTKATAEIFIKM 586
>gi|54023690|ref|YP_117932.1| hypothetical protein nfa17220 [Nocardia farcinica IFM 10152]
gi|54015198|dbj|BAD56568.1| putative DNA polymerase III subunit [Nocardia farcinica IFM 10152]
Length = 598
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 104/212 (49%), Gaps = 25/212 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNA--HVHGITTDM 184
T +V D+ETTG S E + I EI + GGE F TLVNP R +P A V GITT +
Sbjct: 26 TFVVVDLETTGTSPEGDAITEIGAVKVRGGEVLGEFATLVNPGRAIPPAVVQVTGITTAL 85
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V PR+E ++P L + + VAHNAR FD FL +RC+ P+
Sbjct: 86 VYA--APRIEAVLPGFLEFAAG-------AVLVAHNAR-FDTAFLRAAAARCALPWPDAP 135
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQ 300
+ T+ LAR ++ G + V L +L G HRA+ D V+ L ++
Sbjct: 136 VLC-TVKLARRVL---GRDEAPSVRLASLARLLGAS-TQPTHRALDDARATVDVLHALIA 190
Query: 301 RLTFDLKLSLCDLIERGFTPSDLINPKKKKKS 332
R+ SL +L++ + P D+ ++ K+S
Sbjct: 191 RVGNQGVHSLTELMD--YLP-DVSAGQRAKRS 219
>gi|365833259|ref|ZP_09374779.1| exonuclease, DNA polymerase III, epsilon subunit [Coprobacillus sp.
3_3_56FAA]
gi|365258347|gb|EHM88355.1| exonuclease, DNA polymerase III, epsilon subunit [Coprobacillus sp.
3_3_56FAA]
Length = 224
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 20/184 (10%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVHGITTDMVCKP 188
+VFD+ETTGF+++ +RIIEI + G+ F TL P + ++ T++
Sbjct: 42 VVFDLETTGFNKKEDRIIEIGAIKVKNGKVVDRFSTLCAPIKAGKQMYISAKITEVTGIK 101
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILF-------VAHNARSFDVPFLINEFSRCSYEVP 241
+V LL+ + + ++ + VAHN FD+PFL R + E
Sbjct: 102 NVD--------LLNQIPESEAVKNFMCWLGESKISVAHNGAKFDIPFLKEACKRSNVEFK 153
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ +DT+ L++ L N+P+ + L Y+GI AHRA+ D L I +
Sbjct: 154 FTHI-LDTMLLSKALNYVNNGNIPNN-KQETLARYFGIEY--QAHRAVNDCEALLKIFDK 209
Query: 302 LTFD 305
L D
Sbjct: 210 LKND 213
>gi|332653359|ref|ZP_08419104.1| DNA polymerase III, alpha subunit, Gram-positive type
[Ruminococcaceae bacterium D16]
gi|332518505|gb|EGJ48108.1| DNA polymerase III, alpha subunit, Gram-positive type
[Ruminococcaceae bacterium D16]
Length = 1396
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 100/247 (40%), Gaps = 36/247 (14%)
Query: 59 TERWSRRRITTGTEGSKKTIQS--HKLKNIKFEATSTTINVNKTEISKIQRIQHYDIEQI 116
E W R I G ++ H KNIK +N + +++
Sbjct: 310 AEAWGHRAIAITDHGVAQSFPDAWHSAKNIKLLYGVEAYFINDVD------------DRV 357
Query: 117 IAENKDLAKLVTAIV-FDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN 174
+ + IV FDIETTG + E IIEI L GE TF T V P R +
Sbjct: 358 VVHGQPCQDFSQEIVCFDIETTGLDKRREVIIEIGAAVLKNGEVTETFNTFVAPGRILSP 417
Query: 175 AHVH--GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINE 232
+H GIT +M+ P E+ + L +V R AHNA FD+ F+
Sbjct: 418 EIIHLTGITDEMLVG--APSQEEALRAFLDFVGDRP-------LAAHNAE-FDMGFISTG 467
Query: 233 FSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
+ Y +P +D+L LA+ L+ G K L + EY +P + HRA D
Sbjct: 468 CRK--YGIPFTNPSIDSLILAQNLLPELG-----KYKLDIVAEYLQLPAF-NHHRASDDA 519
Query: 293 NCLSLIL 299
++ +L
Sbjct: 520 ATVAYML 526
>gi|306820890|ref|ZP_07454510.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304551004|gb|EFM38975.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 1398
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 15/131 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVFD+ETTGFS N+ I EI + GE F L+NP+R +P + GIT +MV
Sbjct: 383 IVFDLETTGFSNRNDAITEIGAIKVENGEIVEEFSQLINPERPIPEKIQKLTGITNEMVI 442
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P + +++P L + K + VAHN+ FD F+ + S + +P ++
Sbjct: 443 --DKPTISEVLPKFLDFCKDS-------ILVAHNS-DFDTGFVREKASENN--LPYDFDA 490
Query: 247 MDTLTLARELM 257
+DT+ L+R LM
Sbjct: 491 IDTVILSRLLM 501
>gi|295395939|ref|ZP_06806124.1| nuclease subunit of the excinuclease complex [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971212|gb|EFG47102.1| nuclease subunit of the excinuclease complex [Brevibacterium
mcbrellneri ATCC 49030]
Length = 560
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 83/184 (45%), Gaps = 20/184 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH---GITT 182
VT V D+ETTG + I EI GGE FQTLV P R V + V GIT
Sbjct: 13 VTFTVVDLETTGANSAQGDITEIGAVKSRGGEIIGEFQTLVRPTRSVISPFVERLTGITN 72
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
MV P + +IP+ L + G IL VAHNA FDV FL +R Y P
Sbjct: 73 SMVAT--APELASVIPMFLEFAH------GSIL-VAHNA-GFDVGFLKEACARLDYPWP- 121
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ +DT+ LAR + L L ++ +P HRA+ D ILQ +
Sbjct: 122 GYEVVDTVRLARLCVT---RQEVRNHKLGTLATFFNVP-TPPTHRALDDARATHHILQSM 177
Query: 303 TFDL 306
F+L
Sbjct: 178 -FEL 180
>gi|386737640|ref|YP_006210821.1| DNA polymerase III polC-type [Bacillus anthracis str. H9401]
gi|384387492|gb|AFH85153.1| DNA polymerase III polC-type [Bacillus anthracis str. H9401]
Length = 1433
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|167639871|ref|ZP_02398140.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0193]
gi|177652036|ref|ZP_02934582.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0174]
gi|254735856|ref|ZP_05193562.1| DNA polymerase III PolC [Bacillus anthracis str. Western North
America USA6153]
gi|167512272|gb|EDR87649.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0193]
gi|172082405|gb|EDT67470.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0174]
Length = 1433
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 1433
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|254419681|ref|ZP_05033405.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3]
gi|196185858|gb|EDX80834.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3]
Length = 241
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 24/180 (13%)
Query: 130 IVFDIETTGFS-RENERIIEIA---FQDLLGGENSTFQTLVNPKRQVP--NAHVHGITTD 183
IV D ETTGF + +R+IE+ QDLL TF VNP+R +P VHGIT D
Sbjct: 5 IVLDTETTGFDPKTGDRLIEVGCIEIQDLLP-TGRTFHRFVNPERLIPPDAIRVHGITDD 63
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
V D P+ ++ L+ ++ G +AHNA FD F+ E+ C +
Sbjct: 64 KV--KDAPKFHEIADDLIEFI-------GDAPMIAHNA-GFDRNFIDFEYKLCGRPITGE 113
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQRL 302
++DTL LA+ +P+ SL AL + + + LV + H A+ D L+ + L
Sbjct: 114 TRWIDTLKLAQARF----PGMPN--SLDALCKRFKVSLVERTLHGALIDARLLAEVYLEL 167
>gi|374990915|ref|YP_004966410.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
BCW-1]
gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
BCW-1]
Length = 324
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 131 VFDIETTGFSRENERIIEIAFQ-DLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPD 189
V D+ETTG +R++ + +Q D G + TLVNP+R +HG+T+D + D
Sbjct: 24 VVDVETTGLARDDRIVSAAVYQLDARGAVQDHWYTLVNPQRDPGPVWIHGLTSDTLA--D 81
Query: 190 VPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDT 249
P ++ L ++ R + VAHNA FD L E++R P T
Sbjct: 82 APLFSEIADELAQHLDGR-------VLVAHNA-VFDWSMLAREYARAGSAAPVRQRLC-T 132
Query: 250 LTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
+ L++EL G LP+ L++L +YG+ + AH A+ D L+
Sbjct: 133 IALSKEL----GLPLPNH-KLESLAAHYGV-VQERAHHALDDARVLA 173
>gi|365097999|ref|ZP_09331763.1| DNA polymerase III subunit epsilon [Acidovorax sp. NO-1]
gi|363413135|gb|EHL20344.1| DNA polymerase III subunit epsilon [Acidovorax sp. NO-1]
Length = 733
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 32/221 (14%)
Query: 95 INVNKTEISKIQRIQHYDI------EQIIA-ENKDLAKLVTAIVFDIETTGFS-RENERI 146
+ + + S R ++YD EQ A +++ LA+L VFD ETTG + + I
Sbjct: 503 VEIAVGDSSGYSRPEYYDFDLFQMDEQGSALDDRPLAELAY-TVFDTETTGLNPAGGDAI 561
Query: 147 IEIAFQDLLGGE---NSTFQTLVNPKRQVPNAH--VHGITTDMVCKPDVPRMEDLIPILL 201
I++ ++ G+ TF+ LV+P R +P A +HGI+ DMV PR+ D++P+
Sbjct: 562 IQLGAARIVNGKLLRQETFEQLVDPGRPIPQASIPIHGISQDMVAGK--PRIADVLPVFH 619
Query: 202 HYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGG 261
Y + + VAHNA +FD+ FL + + + + +DTL L+ +
Sbjct: 620 AYAQD-------TVLVAHNA-AFDMRFL--QLQEAATGIAFHQPVLDTLLLSAVVHPHQE 669
Query: 262 SNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
S+ L+A+ E + I ++G H A+ D + I RL
Sbjct: 670 SH-----RLEAIAERFNITVLGR-HTALGDALVTAEIWLRL 704
>gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
Length = 1435
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 21/178 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + IIE+A + GG+ F++ NP ++ + + GIT DM
Sbjct: 420 TFVVFDLETTGLSAVYDTIIELAAVKIKGGQIIDKFESFANPHHELSSTTIDLTGITDDM 479
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V + P +E++I K + G +I+ VAHNA SFD+ FL + + Y +
Sbjct: 480 V--KNAPEVEEVIR------KYHEWAGDHIM-VAHNA-SFDMGFLYVCYKK--YGIDTVH 527
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL LAR L ++ L L + +GI L HRA+ D S +L L
Sbjct: 528 ATIDTLELARMLHPELKNH-----RLNTLAKKFGIELT-QHHRAIYDTEATSYLLTHL 579
>gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 1433
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|423374385|ref|ZP_17351723.1| DNA polymerase III polC-type [Bacillus cereus AND1407]
gi|401094297|gb|EJQ02379.1| DNA polymerase III polC-type [Bacillus cereus AND1407]
Length = 1433
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|374296241|ref|YP_005046432.1| DNA polymerase III subunit alpha [Clostridium clariflavum DSM
19732]
gi|359825735|gb|AEV68508.1| DNA polymerase III, alpha chain [Clostridium clariflavum DSM 19732]
Length = 1451
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 90/193 (46%), Gaps = 28/193 (14%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T V D+ETTGFS E+IIEI L G F VNP++ +P V IT M
Sbjct: 424 TYCVLDLETTGFSPITEKIIEIGIMKLKDGNVIDQFSCFVNPEKPIPARVVEVTNITDHM 483
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D ++ + P ++ +++ + VAHNA FD+ FL Y+ ++
Sbjct: 484 V--QDAETIDKVFPKIMEFIEDS-------VLVAHNA-DFDIGFLKQNAKVLGYDF--DF 531
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
++DTLTLA++L + L + + GI V AHRA+ DV+ +
Sbjct: 532 TYVDTLTLAQDLFPDYKT-----YKLGKIAKNLGIK-VEVAHRALDDVDTTVKV------ 579
Query: 305 DLKLSLCDLIERG 317
K+ L L ERG
Sbjct: 580 -FKIMLDMLKERG 591
>gi|333990351|ref|YP_004522965.1| hypothetical protein JDM601_1711 [Mycobacterium sp. JDM601]
gi|333486319|gb|AEF35711.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length = 633
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 97/202 (48%), Gaps = 25/202 (12%)
Query: 128 TAIVFDIETTGFSREN-------ERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH- 178
T +V D+ETTG +R + + I EI + GG F TL+NP+R +P V
Sbjct: 32 TFVVVDLETTG-ARASPGVDGAVDAITEIGAVKVRGGVVEGEFATLINPQRGIPPQIVRL 90
Query: 179 -GITTDMVCKPDVPRMEDLIPILLHY--VKSRQKPGGYILFVAHNARSFDVPFLINEFSR 235
GITT MV D P ++ ++P+ L + + S +K G + VAHNA FDV FL R
Sbjct: 91 TGITTAMVH--DAPTIDAVLPMFLEFAGLGSARKGGDDTVLVAHNA-GFDVGFLTAAAQR 147
Query: 236 CSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD---- 291
C P + T+ LAR ++ PS V L L + + + HRA+ D
Sbjct: 148 CGLGWPRPPVLC-TVRLARRVLSR--EEAPS-VRLAELARLFAVSTTPT-HRALDDARAT 202
Query: 292 VNCLSLILQRLTFDLKLSLCDL 313
V+ L +++R+ + DL
Sbjct: 203 VDVLHALIERVGNQRVHTFADL 224
>gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1]
gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
Length = 1433
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|30263821|ref|NP_846198.1| DNA polymerase III PolC [Bacillus anthracis str. Ames]
gi|47529245|ref|YP_020594.1| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor']
gi|49186668|ref|YP_029920.1| DNA polymerase III PolC [Bacillus anthracis str. Sterne]
gi|52141670|ref|YP_085159.1| DNA polymerase III PolC [Bacillus cereus E33L]
gi|65321145|ref|ZP_00394104.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
[Bacillus anthracis str. A2012]
gi|165872624|ref|ZP_02217255.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0488]
gi|170687849|ref|ZP_02879063.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0465]
gi|170706900|ref|ZP_02897358.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0389]
gi|190568456|ref|ZP_03021363.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. Tsiankovskii-I]
gi|196042171|ref|ZP_03109454.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus NVH0597-99]
gi|218904946|ref|YP_002452780.1| DNA polymerase III PolC [Bacillus cereus AH820]
gi|227813274|ref|YP_002813283.1| DNA polymerase III PolC [Bacillus anthracis str. CDC 684]
gi|228947537|ref|ZP_04109827.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229123331|ref|ZP_04252535.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
gi|229601637|ref|YP_002868056.1| DNA polymerase III PolC [Bacillus anthracis str. A0248]
gi|254683475|ref|ZP_05147335.1| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066]
gi|254721996|ref|ZP_05183785.1| DNA polymerase III PolC [Bacillus anthracis str. A1055]
gi|254756009|ref|ZP_05208040.1| DNA polymerase III PolC [Bacillus anthracis str. Vollum]
gi|254759330|ref|ZP_05211355.1| DNA polymerase III PolC [Bacillus anthracis str. Australia 94]
gi|301055308|ref|YP_003793519.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis
str. CI]
gi|421507358|ref|ZP_15954278.1| DNA polymerase III PolC [Bacillus anthracis str. UR-1]
gi|421639573|ref|ZP_16080164.1| DNA polymerase III PolC [Bacillus anthracis str. BF1]
gi|423550433|ref|ZP_17526760.1| DNA polymerase III polC-type [Bacillus cereus ISP3191]
gi|30258465|gb|AAP27684.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. Ames]
gi|47504393|gb|AAT33069.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. 'Ames Ancestor']
gi|49180595|gb|AAT55971.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. Sterne]
gi|51975139|gb|AAU16689.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
gi|164711656|gb|EDR17202.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0488]
gi|170128318|gb|EDS97187.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0389]
gi|170668165|gb|EDT18914.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0465]
gi|190560460|gb|EDV14438.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. Tsiankovskii-I]
gi|196027023|gb|EDX65647.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus NVH0597-99]
gi|218536830|gb|ACK89228.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus AH820]
gi|227006508|gb|ACP16251.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. CDC 684]
gi|228660107|gb|EEL15743.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
gi|228812057|gb|EEM58388.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229266045|gb|ACQ47682.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0248]
gi|300377477|gb|ADK06381.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis
str. CI]
gi|401190049|gb|EJQ97099.1| DNA polymerase III polC-type [Bacillus cereus ISP3191]
gi|401822492|gb|EJT21642.1| DNA polymerase III PolC [Bacillus anthracis str. UR-1]
gi|403393238|gb|EJY90483.1| DNA polymerase III PolC [Bacillus anthracis str. BF1]
Length = 1433
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187]
gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293]
gi|375285740|ref|YP_005106179.1| DNA polymerase III subunit alpha [Bacillus cereus NC7401]
gi|423353520|ref|ZP_17331147.1| DNA polymerase III polC-type [Bacillus cereus IS075]
gi|423567287|ref|ZP_17543534.1| DNA polymerase III polC-type [Bacillus cereus MSX-A12]
gi|423574576|ref|ZP_17550695.1| DNA polymerase III polC-type [Bacillus cereus MSX-D12]
gi|423604555|ref|ZP_17580448.1| DNA polymerase III polC-type [Bacillus cereus VD102]
gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus AH187]
gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293]
gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
gi|358354267|dbj|BAL19439.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus NC7401]
gi|401089333|gb|EJP97504.1| DNA polymerase III polC-type [Bacillus cereus IS075]
gi|401212101|gb|EJR18847.1| DNA polymerase III polC-type [Bacillus cereus MSX-D12]
gi|401214375|gb|EJR21105.1| DNA polymerase III polC-type [Bacillus cereus MSX-A12]
gi|401245175|gb|EJR51533.1| DNA polymerase III polC-type [Bacillus cereus VD102]
Length = 1433
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|377575333|ref|ZP_09804327.1| DNA polymerase III epsilon subunit [Mobilicoccus pelagius NBRC
104925]
gi|377535910|dbj|GAB49492.1| DNA polymerase III epsilon subunit [Mobilicoccus pelagius NBRC
104925]
Length = 675
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 87/179 (48%), Gaps = 18/179 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG S + I EI + GGE F TLV+P+ VP + GIT +
Sbjct: 97 VTFVVVDLETTGGSPADSSITEIGAVKVNGGEVVEEFHTLVDPQVPVPPFIRLLTGITDE 156
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ P +++++P L + + G +L VAHNA FD+ FL C P
Sbjct: 157 ML--EGAPHIDEVLPSFLEFSR------GAVL-VAHNA-PFDIGFLRAATRACGLSWPAP 206
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DT+TLAR L+ +P+ L L E +G V HRA+ D +L L
Sbjct: 207 -AVVDTVTLARRLVTR--DEVPNH-KLGTLAELFGT-AVAPDHRALHDARATVDVLHGL 260
>gi|392542570|ref|ZP_10289707.1| DNA polymerase III subunit epsilon [Pseudoalteromonas piscicida JCM
20779]
Length = 717
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 21/166 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V DIETTG ++E +RI E+A ++ GE + +Q+LVNP R++P + GIT MV
Sbjct: 553 VVVDIETTGGNKEFDRITEVAMVKVVNGEVVAKWQSLVNPMRRIPQKITELTGITQAMV- 611
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +++ + + + +FVAHN +FD F+ EF+R E L
Sbjct: 612 -SDAPSFFEILEQVELFSQG-------AIFVAHNV-NFDYGFIRQEFARVGREFTRAKLC 662
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
T+ L R+ + S +L+A + +PL+ HRAM D
Sbjct: 663 --TVQLGRKFVPGLRS-----YALEAFCQAMNVPLINH-HRAMDDA 700
>gi|389865175|ref|YP_006367416.1| DNA-directed DNA polymerase [Modestobacter marinus]
gi|388487379|emb|CCH88937.1| DNA-directed DNA polymerase [Modestobacter marinus]
Length = 649
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 26/218 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG S ++ I EI + GG+ FQTLV+P R++P + + GIT+
Sbjct: 52 VTFVVVDLETTGGSPKDSAITEIGAVKVRGGQVLGEFQTLVDPGREIPPYISVLTGITSM 111
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV PR++ ++P L + + + VAHNA FD+ FL P
Sbjct: 112 MVAA--APRIDSVLPAFLEFARG-------TVLVAHNA-PFDLGFLRAACEETGTPWP-P 160
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+ +DT LAR L+ +P+ L L ++ HRA+ D V+ L +
Sbjct: 161 FASVDTAVLARRLLTR--DEVPN-CKLGTLAPFFSA-ETQPCHRALDDARATVDVLHGLF 216
Query: 300 QRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
+RL SL +L G T ++P++++K L +
Sbjct: 217 ERLGPLGVSSLEELT--GLT--RQVDPQRRRKRHLAEH 250
>gi|404393644|ref|ZP_10985564.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium CM2]
gi|404278870|gb|EJZ44350.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium CM2]
Length = 1282
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 25/183 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS +N+ I EI + E TF L+NPKR +P + GIT ++V
Sbjct: 279 VVFDIETTGFSNKNDAITEIGAVKIKNCEIVGTFSQLINPKRPIPEKIQKLTGITDELVA 338
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P L + + VAHN+ FD F+ S+E N+ F
Sbjct: 339 --DKPFIEEVLPNFLEFCSGS-------VLVAHNS-DFDTGFI----REKSFEQKLNYDF 384
Query: 247 --MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DTL L+R +M ++ L + + I L + HRA+ D + I +
Sbjct: 385 DAIDTLVLSRLIMTELKNH-----KLNTIAKELDISL-ENHHRAVDDATATAHIFLKFIE 438
Query: 305 DLK 307
LK
Sbjct: 439 KLK 441
>gi|402310313|ref|ZP_10829279.1| DNA polymerase III, alpha subunit, Gram-positive type [Eubacterium
sp. AS15]
gi|400368765|gb|EJP21772.1| DNA polymerase III, alpha subunit, Gram-positive type [Eubacterium
sp. AS15]
Length = 1398
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 15/131 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVFD+ETTGFS N+ I EI + GE F L+NP+R +P + GIT +MV
Sbjct: 383 IVFDLETTGFSNRNDAITEIGAIKVENGEIVEEFSQLINPERPIPEKIQKLTGITNEMVI 442
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P + +++P L + K + VAHN+ FD F+ + S + +P ++
Sbjct: 443 --DKPTISEVLPKFLDFCKDS-------ILVAHNS-DFDTGFVREKASENN--LPYDFDA 490
Query: 247 MDTLTLARELM 257
+DT+ L+R LM
Sbjct: 491 IDTVILSRLLM 501
>gi|374340698|ref|YP_005097434.1| DNA polymerase III subunit alpha [Marinitoga piezophila KA3]
gi|372102232|gb|AEX86136.1| DNA polymerase III, alpha chain [Marinitoga piezophila KA3]
Length = 1411
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 28/180 (15%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVP--NAHVHGITTDMVC 186
+VFD ETTGF E IIEI + G+ F L+ P + VP + GIT +M+
Sbjct: 396 VVFDFETTGFDPNAEEIIEIGAVKIENGQITDIFHKLIKPSKPVPLKIQQITGITNEML- 454
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFL---INEFSRCSYEVPNN 243
D P + D++P + ++ G + VAHNA +FD FL + E P
Sbjct: 455 -EDAPDISDVLPEFMDFI-------GDSILVAHNA-NFDYRFLRRWVKEIMDIDLVKP-- 503
Query: 244 WLFMDTLTLARELMK-SGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
++DTL +AR L+ GG +L V L + HRA D + + +L
Sbjct: 504 --YIDTLAMARALLNLKGGHSLDKVVKSLGLENF-------EHHRAHEDAKITAKVFLKL 554
>gi|342215817|ref|ZP_08708464.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus sp. oral taxon 375 str. F0436]
gi|341586707|gb|EGS30107.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus sp. oral taxon 375 str. F0436]
Length = 1136
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 24/186 (12%)
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH 178
NKD + V VFD+ETTGFS ++RI EI + G F L+NP + +P V
Sbjct: 112 NKDNPEFV---VFDVETTGFSPIHDRITEIGAVKVKNGRVVDRFSQLINPLKPIPPRVVE 168
Query: 179 --GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC 236
I+ +MV + P E + L + K+ + VAHNA SFD+ F+ F R
Sbjct: 169 LTSISNEMVA--NEPSFEGVAQSFLDFTKN-------CIMVAHNA-SFDMAFMTKSFERN 218
Query: 237 SYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
Y+ +MDTL LA+ + L L + GI L+ +AHRA+ D +
Sbjct: 219 GYDF--QRAYMDTLELAKNYIPK-----TKNYKLGTLCKKMGISLI-NAHRAVNDAEATA 270
Query: 297 LILQRL 302
+ +L
Sbjct: 271 ELFIKL 276
>gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus W]
gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus W]
gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 1433
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405]
gi|125713736|gb|ABN52228.1| DNA polymerase III, alpha subunit [Clostridium thermocellum ATCC
27405]
Length = 1442
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 29/183 (15%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTG S + ++I EI + G+ TF T VNP+ +P + GIT DMV
Sbjct: 430 VVFDIETTGLSADKDKITEIGAVKIKEGKIVDTFSTFVNPEIPIPEFVVKLTGITDDMVS 489
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P ++ ++P L +V G VAHNA FD F+ + + V N
Sbjct: 490 --DAPTIDKVLPEFLEFV-------GTSPLVAHNA-VFDTGFIRHNARLINRNVDNP--V 537
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD--------VNCLSLI 298
+DTL L+R++ K L + ++ G+ L + HRA+ D + CL ++
Sbjct: 538 IDTLELSRQMFPE-----LKKHKLDVVAKHLGVSL-ENHHRALDDAKACGEIFIKCLEIL 591
Query: 299 LQR 301
++
Sbjct: 592 AEK 594
>gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341]
gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341]
Length = 1449
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 89/181 (49%), Gaps = 19/181 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGG-ENSTFQTLVNPKRQVPN--AHVHGIT 181
K T +VFD+ETTG S E +R+IEIA + G E +F++ +NP+R + + IT
Sbjct: 425 KDATYVVFDVETTGLSAERDRLIEIAAVKVKNGTEIDSFESYINPQRPISELITRLTSIT 484
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
D V D P ++++ +++ + VAHNA+ FD+ FL F R E
Sbjct: 485 NDDV--RDAPLEKEVMTNFYNWLDKDD------ILVAHNAK-FDLGFLDTCFERLGLENK 535
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
NN +DTL ++R K + L L + Y + LV HRA+ D + I +
Sbjct: 536 NN-ASIDTLFVSRAENKEA-----KRHGLSNLAKLYKVRLV-QHHRAIYDTKATAEIFVK 588
Query: 302 L 302
+
Sbjct: 589 M 589
>gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
2360]
gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
gi|385778569|ref|YP_005687734.1| DNA polymerase III subunit alpha [Clostridium thermocellum DSM
1313]
gi|419723603|ref|ZP_14250718.1| DNA polymerase III polC-type [Clostridium thermocellum AD2]
gi|419724572|ref|ZP_14251634.1| DNA polymerase III polC-type [Clostridium thermocellum YS]
gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
2360]
gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
1313]
gi|380772119|gb|EIC05977.1| DNA polymerase III polC-type [Clostridium thermocellum YS]
gi|380780285|gb|EIC09968.1| DNA polymerase III polC-type [Clostridium thermocellum AD2]
Length = 1442
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 29/183 (15%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTG S + ++I EI + G+ TF T VNP+ +P + GIT DMV
Sbjct: 430 VVFDIETTGLSADKDKITEIGAVKIKEGKIVDTFSTFVNPEIPIPEFVVKLTGITDDMVS 489
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P ++ ++P L +V G VAHNA FD F+ + + V N
Sbjct: 490 --DAPTIDKVLPEFLEFV-------GTSPLVAHNA-VFDTGFIRHNARLINRNVDNP--V 537
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD--------VNCLSLI 298
+DTL L+R++ K L + ++ G+ L + HRA+ D + CL ++
Sbjct: 538 IDTLELSRQMFPE-----LKKHKLDVVAKHLGVSL-ENHHRALDDAKACGEIFIKCLEIL 591
Query: 299 LQR 301
++
Sbjct: 592 AEK 594
>gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
Length = 1433
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LI--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|365859554|ref|ZP_09399414.1| DNA polymerase III, epsilon subunit [Acetobacteraceae bacterium
AT-5844]
gi|363712309|gb|EHL96007.1| DNA polymerase III, epsilon subunit [Acetobacteraceae bacterium
AT-5844]
Length = 240
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 93/181 (51%), Gaps = 24/181 (13%)
Query: 129 AIVFDIETTGFS-RENERIIEIAFQDL--LGGENSTFQTLVNPKRQVPN--AHVHGITTD 183
A+V D ETTG +R++E+A +L L F L++P+R VP VHG T +
Sbjct: 4 ALVLDTETTGLDPATGDRVLEVAAVELENLVPTGRHFHVLIDPERDVPEEAVRVHGFTRE 63
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC-SYEVPN 242
M+ P+ +++P LL ++ G VAHNA FD FL +EF R + +P
Sbjct: 64 MLIG--KPKFAEILPGLLEFL-------GDDPVVAHNA-VFDFAFLDHEFKRAGAAPIPR 113
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIP-LVGSAHRAMADVNCLSLILQR 301
+ + +DTL LA++ LP+ SL AL YGI + ++H A+ DV L+ +
Sbjct: 114 SRM-IDTLVLAKKRF----PGLPN--SLDALCRRYGIDNSMRTSHNALLDVQLLAQVYLE 166
Query: 302 L 302
L
Sbjct: 167 L 167
>gi|375094186|ref|ZP_09740451.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora marina XMU15]
gi|374654919|gb|EHR49752.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora marina XMU15]
Length = 563
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 99/220 (45%), Gaps = 32/220 (14%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T ++ D+ETTG + I EI + GGE F TLV+P +P V GIT+ M
Sbjct: 16 TFVIVDLETTGGAPAARGITEIGAVKVRGGETLGEFATLVDPGAPIPPQVVALTGITSAM 75
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V PR+E ++P L + + VAHNA FD FL Y P
Sbjct: 76 VSA--APRIERVLPAFLEFASG-------AVLVAHNA-GFDTTFLRAACQAHGYAWPRPP 125
Query: 245 LFMDTLTLARELMK---SGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSL 297
+ TL LAR ++ +GG L + +L R HRA+ D V+ L
Sbjct: 126 VVC-TLRLARRVLAPEHTGGYRLSALATLLGARTK-------PTHRALDDARATVDVLHA 177
Query: 298 ILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
+L+R+ SL +L++ + P + P +++K L ++
Sbjct: 178 LLERVGSVGVHSLEELLD--YLPD--VTPAQRRKRGLAAH 213
>gi|107022085|ref|YP_620412.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia AU
1054]
gi|116689029|ref|YP_834652.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia
HI2424]
gi|170732318|ref|YP_001764265.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
gi|254246035|ref|ZP_04939356.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
PC184]
gi|105892274|gb|ABF75439.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
1054]
gi|116647118|gb|ABK07759.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
HI2424]
gi|124870811|gb|EAY62527.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
PC184]
gi|169815560|gb|ACA90143.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
MC0-3]
Length = 375
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 20/175 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG S + RI EI ++ ST+ +LVNP + +P + GI+ MV
Sbjct: 16 VFVDLETTGGSLADHRITEIGVVEIGPLGVSTWTSLVNPGQAIPPFIQQLTGISDAMVR- 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P L P L + + LFVAHNA SFD FL EF R + +
Sbjct: 75 -DAPTFASLAPALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAGLAFNPD--VL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
T+ L+R L S+ L AL E +G+ + + HRA+AD + L ++L
Sbjct: 124 CTVRLSRALFPR-----ESRHGLDALIERHGL-VPAARHRALADADLLWQFWRQL 172
>gi|432343781|ref|ZP_19592923.1| hypothetical protein Rwratislav_41655 [Rhodococcus wratislaviensis
IFP 2016]
gi|430771191|gb|ELB87077.1| hypothetical protein Rwratislav_41655 [Rhodococcus wratislaviensis
IFP 2016]
Length = 679
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 25/212 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG + I EI + GGE + TLV+P R +P + GITT M
Sbjct: 23 TFVVVDLETTGARPGEDAITEIGAVKIRGGEVIAEMATLVDPGRSIPPHIVEITGITTAM 82
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D PR+E ++P L + + G +L VAHNA FD FL S P +
Sbjct: 83 VI--DAPRIERVLPAFLEFAR------GAVL-VAHNA-PFDTGFLKAAASATDTPWP-KF 131
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQ 300
+ T+ LAR ++ PS V L +L + + + HRA+ D V+ L ++
Sbjct: 132 TVLCTVKLARRVLSR--DEAPS-VKLSSLARLFDVGTTPT-HRALDDARATVDVLHALIA 187
Query: 301 RLTFDLKLSLCDLIERGFTPSDLINPKKKKKS 332
R+ SL +L++ + P D+ + ++ K+S
Sbjct: 188 RVGNQGVHSLTELVD--YLP-DVSSHQRAKRS 216
>gi|340354961|ref|ZP_08677656.1| DNA polymerase III PolC [Sporosarcina newyorkensis 2681]
gi|339622839|gb|EGQ27351.1| DNA polymerase III PolC [Sporosarcina newyorkensis 2681]
Length = 1440
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 97/213 (45%), Gaps = 27/213 (12%)
Query: 116 IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN 174
+ E L + T +VFD+ETTG S + IIE+A + GGE F+ NP + +
Sbjct: 412 VYEEQHRLLETDTYVVFDVETTGLSAVYDTIIELAAVRVRGGEIIDRFERFANPHHPLSS 471
Query: 175 A--HVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINE 232
++ GIT DMV D P + +++ + ++ G + +AHNA SFD+ F
Sbjct: 472 VTTNLTGITDDMV--KDAPEVSEVMADFIEFI-------GDAVLIAHNA-SFDMGFFYAS 521
Query: 233 FSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
R E P + +DTL L+R L ++ L L + + I L HRA+ D
Sbjct: 522 CKRAKIETP-AYPVIDTLELSRFLYPELRNH-----RLNTLAKKFDIELT-QHHRAIYDT 574
Query: 293 NCLSLILQRLTFDLKLSLCDLIERGFTPSDLIN 325
+ + RL L D E+G D +N
Sbjct: 575 EATAYLFLRL-------LADAQEKGIEWLDDLN 600
>gi|229157184|ref|ZP_04285264.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342]
gi|228626248|gb|EEK82995.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342]
Length = 315
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D +E+++P+ L ++ + + VAHNA SFD+ FL + + S P N +
Sbjct: 70 -SDARTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLSLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|119387281|ref|YP_918315.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
PD1222]
gi|119377856|gb|ABL72619.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
PD1222]
Length = 659
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 84/194 (43%), Gaps = 22/194 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE--NSTFQTLVNPKRQVPNAH--VHGITT 182
+T +VFD ETTG +RI++IA + G F TLV+P R +P A VHGIT
Sbjct: 451 LTCVVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDPGRPIPPASTAVHGITD 510
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
MV P M + H+ + + VAHNA FD+ FL N
Sbjct: 511 AMVAG--APDMTAALTAFHHFAED-------TVLVAHNA-PFDMGFLRRAVPETGAHFDN 560
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLILQR 301
+DT+ L+ L G + P SL AL E GI + A H AM D + R
Sbjct: 561 Q--VLDTVLLSAMLW---GQSAPH--SLDALTERLGIVIPPEARHTAMGDARATAEAYLR 613
Query: 302 LTFDLKLSLCDLIE 315
L L+ D E
Sbjct: 614 LIAALEAKGLDRFE 627
>gi|381179961|ref|ZP_09888806.1| DNA polymerase III, epsilon subunit [Treponema saccharophilum DSM
2985]
gi|380768057|gb|EIC02051.1| DNA polymerase III, epsilon subunit [Treponema saccharophilum DSM
2985]
Length = 245
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 86/178 (48%), Gaps = 23/178 (12%)
Query: 131 VFDIETTGFSRENERIIEI-AFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
V D ETTG E ERI EI A + GEN F TLVNP++ +P + IT +MV
Sbjct: 78 VLDTETTGKCAERERITEIGAIRFDKNGENGKFGTLVNPEKPIPPFITQITNITDEMVS- 136
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
P E +IP + + K G IL +AHNA FD+ F+ +E R N +
Sbjct: 137 -GAPTAETVIPQFMEFSK------GCIL-IAHNA-PFDLQFINHELMRLGMGTLQNDS-I 186
Query: 248 DTLTLARELMKSGGS-NLPSKVSLQALREYYGIPLVGSAHRAMADVN-CLSLILQRLT 303
DTL L R + G N P L E GI +V SAHRA D C + L+ L+
Sbjct: 187 DTLRLTRRTFPTFGHWNQPF------LAETLGINIV-SAHRAEDDARVCKEIFLRALS 237
>gi|320332653|ref|YP_004169364.1| DNA polymerase III subunit epsilon [Deinococcus maricopensis DSM
21211]
gi|319753942|gb|ADV65699.1| DNA polymerase III, epsilon subunit [Deinococcus maricopensis DSM
21211]
Length = 174
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 15/115 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGG---ENSTFQTLVNPKRQVPN--AHVHGITTDM 184
+VFD+ETTG S E + I+EI + G E+ TF TLVNP+R +P + VHGI
Sbjct: 4 VVFDLETTGLSPERDAIVEIGAIRIRNGEVLEDDTFHTLVNPERDIPWYVSRVHGIRNAH 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
V PR+ + +P L Y G VAHNA +FD F+ +R E
Sbjct: 64 VAS--APRITEALPAFLQY-------AGTTPVVAHNA-AFDTGFIRAAAARQGLE 108
>gi|167635812|ref|ZP_02394121.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0442]
gi|254739618|ref|ZP_05197312.1| DNA polymerase III PolC [Bacillus anthracis str. Kruger B]
gi|167528769|gb|EDR91527.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0442]
Length = 1433
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINIGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|319780604|ref|YP_004140080.1| DNA polymerase III subunit epsilon [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166492|gb|ADV10030.1| DNA polymerase III, epsilon subunit [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 233
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 77/156 (49%), Gaps = 23/156 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLG--GENSTFQTLVNPKRQ---VPNAHVHGITT-D 183
I+FD ETTG ++R+IE+ +L+ TF +NP+ + V VHGI+ D
Sbjct: 4 IIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHVEAQAVHGISAAD 63
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
+ KP +++ L + + VAHNA +FDV FL EF R + V +N
Sbjct: 64 LAGKP---TFAEIVQEWLDFTDGAK-------LVAHNA-TFDVGFLNVEFGRLGHPVIDN 112
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGI 279
+ +DTL LAR G P+ SL AL YGI
Sbjct: 113 GVVVDTLALARRKHPMG----PN--SLDALCRRYGI 142
>gi|409203281|ref|ZP_11231484.1| DNA polymerase III subunit epsilon [Pseudoalteromonas flavipulchra
JG1]
Length = 717
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 21/166 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V DIETTG ++E +RI E+A ++ GE + +Q+LVNP R++P + GIT MV
Sbjct: 553 VVVDIETTGGNKEFDRITEVAMVKVVNGEVVAKWQSLVNPMRRIPQKITELTGITQAMV- 611
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +++ + R G +FVAHN +FD F+ EF+R E L
Sbjct: 612 -SDAPSFFEILEQV-----ERFSQGA--IFVAHNV-NFDYGFIRQEFARVGREFTRAKLC 662
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
T+ L R+ + S +L A + +PLV HRAM D
Sbjct: 663 --TVQLGRKFVPGLRS-----YALGAFCQAMNVPLVNH-HRAMDDA 700
>gi|424858434|ref|ZP_18282466.1| DNA-directed DNA polymerase [Rhodococcus opacus PD630]
gi|356662121|gb|EHI42420.1| DNA-directed DNA polymerase [Rhodococcus opacus PD630]
Length = 588
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 25/212 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG + I EI + GGE + TLV+P R +P + GITT M
Sbjct: 23 TFVVVDLETTGARPGEDAITEIGAVKIRGGEVIAEMATLVDPGRSIPPHIVEITGITTAM 82
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D PR+E ++P L + + G +L VAHNA FD FL S P +
Sbjct: 83 VI--DAPRIERVLPAFLEFAR------GAVL-VAHNA-PFDTGFLKAAASATDTPWP-KF 131
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQ 300
+ T+ LAR ++ PS V L +L + + + HRA+ D V+ L ++
Sbjct: 132 TVLCTVKLARRVLSR--DEAPS-VKLSSLARLFDVGTTPT-HRALDDARATVDVLHALIA 187
Query: 301 RLTFDLKLSLCDLIERGFTPSDLINPKKKKKS 332
R+ SL +L++ + P D+ + ++ K+S
Sbjct: 188 RVGNQGVHSLTELVD--YLP-DVSSHQRAKRS 216
>gi|302386245|ref|YP_003822067.1| DNA polymerase III subunit alpha [Clostridium saccharolyticum WM1]
gi|302196873|gb|ADL04444.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
Length = 1516
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 104/220 (47%), Gaps = 34/220 (15%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENST----FQTLVN 167
D++Q++ +K+ + + +VFDIETTGFS RIIEI + EN T F T VN
Sbjct: 475 DLKQLVDNSKNQSLSDSYVVFDIETTGFSSSRNRIIEIGAVKV---ENGTIADKFSTFVN 531
Query: 168 PKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFD 225
P +P + GI +MV P++ +++P L + G + VAHNA +FD
Sbjct: 532 PDVPIPFEIEKLTGINDNMVLP--YPKINEILPRFLEFC-------GNSVLVAHNA-AFD 581
Query: 226 VPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA 285
V F+ +R + +DT+ LAR L+ NL ++ L + + + L +
Sbjct: 582 VSFIAYNAARLNLAFEPT--VIDTVALARLLL----PNL-NRYKLDTVAKALVVSL-ENH 633
Query: 286 HRAMADVNCLSLILQRLTFDLKLSLCDLIERGFTPSDLIN 325
HRA+ D C + I L+ ERG D +N
Sbjct: 634 HRAVDDAGCTAEIFVAFVKMLR-------ERGVETLDELN 666
>gi|312195665|ref|YP_004015726.1| DNA polymerase III epsilon subunit [Frankia sp. EuI1c]
gi|311227001|gb|ADP79856.1| DNA polymerase III, epsilon subunit [Frankia sp. EuI1c]
Length = 615
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 93/218 (42%), Gaps = 18/218 (8%)
Query: 123 LAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHG 179
L + VT +VFD+ETTG I E + GGE + F TLV +P + G
Sbjct: 46 LLRDVTFVVFDLETTGTGPTTAEITEFGAVKVRGGEVVAEFATLVRASTGIPPLITVLTG 105
Query: 180 ITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
IT M+ P + +++P L +++ + VAHNA FD+ FL R Y
Sbjct: 106 ITDAMLAT--APPLAEVLPAFLEFIQG-------TVLVAHNA-GFDLSFLKAACERVGYP 155
Query: 240 VPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
VP W +DT LAR ++ S SL L P HRA+AD +L
Sbjct: 156 VP-TWEHLDTARLARRIVTRDESPNNKLSSLARLFRARTEPC----HRALADARATVDVL 210
Query: 300 QRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L L +E S ++P +++K L +
Sbjct: 211 HGLFERLGNLGVTTLEDVHAYSARVSPAQRRKRVLADD 248
>gi|154333792|ref|XP_001563151.1| putative mitochondrial DNA polymerase I protein B [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1419
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 92/212 (43%), Gaps = 27/212 (12%)
Query: 107 RIQHYDIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLV 166
RI Y I A+ K + FDIETTG + + I+E+A D + ENSTF TLV
Sbjct: 747 RIHQY----IEAQGSQKLKTYRIVFFDIETTGLNPSTDAIVEVAMFDPI--ENSTFHTLV 800
Query: 167 NPKRQVP--NAHVHGITTDMVCKPDVPRMEDLIPILLHYVK---SRQKPGGYILFVAHNA 221
NP+R + +H IT +MV D P ++ + + Y++ + P ++ V HN
Sbjct: 801 NPQRPISPRTVGIHHITNEMV--RDAPTVDVVAKSIGQYLRLDMASYNPHEILVLVGHNV 858
Query: 222 RSFDVPFLINEFSRCSYEVP-NNWLFMDTLTL-------ARELMKSGGSNLP------SK 267
S D P L + E + LF D+L L R ++ +N P S
Sbjct: 859 FSLDQPMLRRALECYAPECQLDGVLFCDSLALLNSHRSVLRWRLRGNRANQPLMEALASS 918
Query: 268 VSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
+ L L + G HRA D L +L
Sbjct: 919 LRLSRLITALNVRPEGDLHRADTDTKALWYVL 950
>gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
Length = 1433
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLAKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|423558619|ref|ZP_17534921.1| DNA polymerase III polC-type [Bacillus cereus MC67]
gi|401191887|gb|EJQ98909.1| DNA polymerase III polC-type [Bacillus cereus MC67]
Length = 1433
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGIEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-LDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|111018139|ref|YP_701111.1| hypothetical protein RHA1_ro01126 [Rhodococcus jostii RHA1]
gi|110817669|gb|ABG92953.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
Length = 588
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 25/212 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG + I EI + GGE + TLV+P R +P + GITT M
Sbjct: 23 TFVVVDLETTGARPGEDAITEIGAVKIRGGEVIAEMATLVDPGRSIPPHIVEITGITTAM 82
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D PR+E ++P L + + G +L VAHNA FD FL S P +
Sbjct: 83 VI--DAPRIERVLPAFLEFAR------GAVL-VAHNA-PFDTGFLKAAASATDTPWP-KF 131
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQ 300
+ T+ LAR ++ PS V L +L + + + HRA+ D V+ L ++
Sbjct: 132 TVLCTVKLARRVLSR--DEAPS-VKLSSLARLFDVGTTPT-HRALDDARATVDVLHALIA 187
Query: 301 RLTFDLKLSLCDLIERGFTPSDLINPKKKKKS 332
R+ SL +L++ + P D+ + ++ K+S
Sbjct: 188 RVGNQGVHSLTELVD--YLP-DVSSHQRAKRS 216
>gi|296132882|ref|YP_003640129.1| DNA polymerase III subunit alpha [Thermincola potens JR]
gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
Length = 1442
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 102/212 (48%), Gaps = 32/212 (15%)
Query: 99 KTEISKIQRIQHYDIEQ----IIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDL 154
K+ + I I+ Y IE II ++ K T +VFD+ETTGFS + IIEI +
Sbjct: 396 KSNVKIIYGIEAYLIEDGAPIIINPREEAVKDATYVVFDLETTGFSPVTDEIIEIGAVKI 455
Query: 155 LGGEN-STFQTLVNPKRQVPNA--HVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPG 211
G + F V P R++P + GIT +MV D P + +++P + +V
Sbjct: 456 HGNKILDRFSAFVCPGREIPPEVQELTGITNNMVS--DAPPIAEVLPKFIDFV------- 506
Query: 212 GYILFVAHNARSFDVPFLINEFSRCSYE-VPNNWL---FMDTLTLARELMKSGGSNLPSK 267
G + VAHNA+ FD FL R + E + N L +DTL LAR L ++
Sbjct: 507 GDAVLVAHNAQ-FDTGFL-----RANMEKILNRTLAQPVLDTLGLARGLFPDMKNH---- 556
Query: 268 VSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
L+ L + + + L + HRA+ D + +L
Sbjct: 557 -KLKTLAKEFNVKL-ENHHRAVDDAEATAQLL 586
>gi|167586484|ref|ZP_02378872.1| DNA polymerase III, epsilon subunit [Burkholderia ubonensis Bu]
Length = 375
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 84/176 (47%), Gaps = 22/176 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG S RI EI ++ ST+ +LVNP + +P + GI+ MV
Sbjct: 16 VFVDLETTGGSSAEHRITEIGVVEIGPLGVSTWTSLVNPGQPIPPFIQQLTGISDAMVR- 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P L P L + + LFVAHNA SFD FL EF R + +
Sbjct: 75 -DAPSFASLAPALFERLDGK-------LFVAHNA-SFDRGFLRAEFERIGLAFNPD--VL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLILQRL 302
T+ L+R L S+ L AL E +G LV SA HRA+AD + L ++L
Sbjct: 124 CTVRLSRALFPR-----ESRHGLDALIERHG--LVPSARHRALADADLLWQFWRQL 172
>gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
Length = 1433
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|419965028|ref|ZP_14480977.1| hypothetical protein WSS_A22918 [Rhodococcus opacus M213]
gi|414569424|gb|EKT80168.1| hypothetical protein WSS_A22918 [Rhodococcus opacus M213]
Length = 596
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 25/212 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG + I EI + GGE + TLV+P R +P + GITT M
Sbjct: 31 TFVVVDLETTGARPGEDAITEIGAVKIRGGEVIAEMATLVDPGRSIPPHIVEITGITTAM 90
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D PR+E ++P L + + G +L VAHNA FD FL S P +
Sbjct: 91 VI--DAPRIERVLPAFLEFAR------GAVL-VAHNA-PFDTGFLKAAASATDTPWP-KF 139
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQ 300
+ T+ LAR ++ PS V L +L + + + HRA+ D V+ L ++
Sbjct: 140 TVLCTVKLARRVLSR--DEAPS-VKLSSLARLFDVGTTPT-HRALDDARATVDVLHALIA 195
Query: 301 RLTFDLKLSLCDLIERGFTPSDLINPKKKKKS 332
R+ SL +L++ + P D+ + ++ K+S
Sbjct: 196 RVGNQGVHSLTELVD--YLP-DVSSHQRAKRS 224
>gi|397730395|ref|ZP_10497154.1| hypothetical protein JVH1_1564 [Rhodococcus sp. JVH1]
gi|396933787|gb|EJJ00938.1| hypothetical protein JVH1_1564 [Rhodococcus sp. JVH1]
Length = 588
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 25/212 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG + I EI + GGE + TLV+P R +P + GITT M
Sbjct: 23 TFVVVDLETTGARPGEDAITEIGAVKIRGGEVIAEMATLVDPGRSIPPHIVEITGITTAM 82
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D PR+E ++P L + + G +L VAHNA FD FL S P +
Sbjct: 83 VI--DAPRIERVLPAFLEFAR------GAVL-VAHNA-PFDTGFLKAAASATDTPWP-KF 131
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQ 300
+ T+ LAR ++ PS V L +L + + + HRA+ D V+ L ++
Sbjct: 132 TVLCTVKLARRVLSR--DEAPS-VKLSSLARLFDVGTTPT-HRALDDARATVDVLHALIA 187
Query: 301 RLTFDLKLSLCDLIERGFTPSDLINPKKKKKS 332
R+ SL +L++ + P D+ + ++ K+S
Sbjct: 188 RVGNQGVHSLTELVD--YLP-DVSSHQRAKRS 216
>gi|379735550|ref|YP_005329056.1| DNA-directed DNA polymerase [Blastococcus saxobsidens DD2]
gi|378783357|emb|CCG03025.1| DNA-directed DNA polymerase [Blastococcus saxobsidens DD2]
Length = 593
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 112/239 (46%), Gaps = 32/239 (13%)
Query: 107 RIQHYDIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTL 165
R Q I+++ LA+ VT +V D+ETTG S ++ I EI + GG+ FQTL
Sbjct: 9 RYQQVTIDEV---GTPLAQ-VTFVVVDLETTGGSPKDSAITEIGAVKVRGGQVLGEFQTL 64
Query: 166 VNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARS 223
V+P +P + + GIT+ MV PR+ ++P L + + G +L VAHNA
Sbjct: 65 VDPGHAIPPYISVLTGITSSMVAA--APRIGSVLPSFLEFAR------GAVL-VAHNA-P 114
Query: 224 FDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG 283
FD+ FL + P +DT LAR L+ +P+ L L Y+
Sbjct: 115 FDLGFLKAACAENGLAWPAA-ASVDTAVLARRLLSR--DEVPN-CKLATLAPYFSA-TTS 169
Query: 284 SAHRAMAD----VNCLSLILQRLTFDLKLSLCDLIE-RGFTPSDLINPKKKKKSKLVSN 337
HRA+ D V+ L + +RL L + L E G T ++P++++K L
Sbjct: 170 PTHRALDDARATVDVLHGLFERLG---PLGVTTLEELTGLT--RQVDPERRRKRDLADG 223
>gi|407706277|ref|YP_006829862.1| hypothetical protein MC28_3041 [Bacillus thuringiensis MC28]
gi|407383962|gb|AFU14463.1| DNA polymerase III polC-type [Bacillus thuringiensis MC28]
Length = 1433
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLAKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|403745578|ref|ZP_10954373.1| DNA polymerase III, alpha subunit [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121296|gb|EJY55610.1| DNA polymerase III, alpha subunit [Alicyclobacillus hesperidum
URH17-3-68]
Length = 1335
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 96/193 (49%), Gaps = 27/193 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +VFD ETTG + + +IEIA + GGE T+ +L++P+R + + GI+ DM
Sbjct: 321 TFVVFDTETTGLNAREDTLIEIAAVKVRGGEIVDTYASLIDPERPLSPKITELTGISNDM 380
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFL---INEFSRCSYEVP 241
V P++ D++ +V+ G IL VAHNA FDV FL ++E P
Sbjct: 381 V--KGQPKLADVLEKFREFVQ------GAIL-VAHNA-EFDVGFLNQCAERLGMPAWEEP 430
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DTL LAR L G N L+ L + + + LV + HRA+AD + +
Sbjct: 431 ----VIDTLALARALY-PGEKNY----KLKTLTQKFSVELV-NHHRALADSEATAKVFLH 480
Query: 302 LTFDLK-LSLCDL 313
+ D K L DL
Sbjct: 481 MLKDCKERGLVDL 493
>gi|384102191|ref|ZP_10003209.1| hypothetical protein W59_12521 [Rhodococcus imtechensis RKJ300]
gi|383840381|gb|EID79697.1| hypothetical protein W59_12521 [Rhodococcus imtechensis RKJ300]
Length = 588
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 25/212 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG + I EI + GGE + TLV+P R +P + GITT M
Sbjct: 23 TFVVVDLETTGARPGEDAITEIGAVKIRGGEVIAEMATLVDPGRSIPPHIVEITGITTAM 82
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D PR+E ++P L + + G +L VAHNA FD FL S P +
Sbjct: 83 VI--DAPRIERVLPAFLEFAR------GAVL-VAHNA-PFDTGFLKAAASATDTPWP-KF 131
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQ 300
+ T+ LAR ++ PS V L +L + + + HRA+ D V+ L ++
Sbjct: 132 TVLCTVKLARRVLSR--DEAPS-VKLSSLARLFDVGTTPT-HRALDDARATVDVLHALIA 187
Query: 301 RLTFDLKLSLCDLIERGFTPSDLINPKKKKKS 332
R+ SL +L++ + P D+ + ++ K+S
Sbjct: 188 RVGNQGVHSLTELVD--YLP-DVSSHQRAKRS 216
>gi|374323507|ref|YP_005076636.1| DNA polymerase III polC-type (PolIII) [Paenibacillus terrae
HPL-003]
gi|357202516|gb|AET60413.1| DNA polymerase III polC-type (PolIII) [Paenibacillus terrae
HPL-003]
Length = 1438
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 86/184 (46%), Gaps = 20/184 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDL-LGGENSTFQTLVNPKRQVPN--AHVHGIT 181
K T +VFDIETTG S RIIEIA + G E + T VNP ++P + I
Sbjct: 417 KTATYVVFDIETTGLSVTQNRIIEIAAVKMHEGKEVDRYATFVNPHERIPYNIQQLTNIN 476
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
+MV D P D+ P++ +V G + VAHNAR FDV F+
Sbjct: 477 DEMV--KDAP---DIEPVIKEFVAF----AGDAVLVAHNAR-FDVGFIQATLRNMGLPEM 526
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL LAR L + ++ L L Y + L S HRA+ D L+ +L
Sbjct: 527 TNPV-LDTLELARLLFPTMKNH-----RLNTLTTKYKVAL-ESHHRAIDDTVALTEVLNG 579
Query: 302 LTFD 305
L D
Sbjct: 580 LLND 583
>gi|423615921|ref|ZP_17591755.1| DNA polymerase III polC-type [Bacillus cereus VD115]
gi|401260458|gb|EJR66631.1| DNA polymerase III polC-type [Bacillus cereus VD115]
Length = 1433
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLAKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|392957555|ref|ZP_10323078.1| DNA polymerase III PolC [Bacillus macauensis ZFHKF-1]
gi|391876518|gb|EIT85115.1| DNA polymerase III PolC [Bacillus macauensis ZFHKF-1]
Length = 1431
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 20/178 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S +IIE+A + GE F+ NP + + ++ GIT DM
Sbjct: 416 TYVVFDVETTGLSAVYNKIIELAAVKIHNGEIIDRFEAFANPHEPLSDTTINLTGITDDM 475
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V + P +ED++ ++ G VAHNA SFD+ FL F +CS N
Sbjct: 476 V--QNAPEIEDVLKDFHTFI-------GDDTLVAHNA-SFDMGFLNEGFRKCSIPEAKNP 525
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ +DTL LAR ++ ++ L L + + I L HRA+ D +L +L
Sbjct: 526 V-VDTLELARFILPELKNH-----RLNTLCKKFDIELT-QHHRAIYDAEATGYLLWKL 576
>gi|300856800|ref|YP_003781784.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
gi|300436915|gb|ADK16682.1| predicted DNA polymerase III [Clostridium ljungdahlii DSM 13528]
Length = 362
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 27/174 (15%)
Query: 130 IVFDIETTGFSRENERIIEIA---FQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDM 184
+ D ETTG N++I+EI ++D E F L+NP +P ++GI M
Sbjct: 62 VALDFETTGLDYRNDKIVEIGAVKYKD--EKETDKFHFLINPHIHIPEKITKINGIEDSM 119
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P + ++IP L+ ++ G + V HNAR FD+ FL S Y +
Sbjct: 120 V--KDSPSINEVIPKLIDFM-------GNLPIVVHNAR-FDIDFLDENMSDNKYRGNS-- 167
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLI 298
+DTL+++R++ ++ ++ LQ +++Y I L ++HRA+ D + I
Sbjct: 168 -VIDTLSISRKMFENIDNH-----RLQTIKDYLKIDL--NSHRAIDDAKVAAEI 213
>gi|423389875|ref|ZP_17367101.1| DNA polymerase III polC-type [Bacillus cereus BAG1X1-3]
gi|401641966|gb|EJS59683.1| DNA polymerase III polC-type [Bacillus cereus BAG1X1-3]
Length = 1433
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|423448323|ref|ZP_17425202.1| DNA polymerase III polC-type [Bacillus cereus BAG5O-1]
gi|423540864|ref|ZP_17517255.1| DNA polymerase III polC-type [Bacillus cereus HuB4-10]
gi|401128917|gb|EJQ36600.1| DNA polymerase III polC-type [Bacillus cereus BAG5O-1]
gi|401172052|gb|EJQ79273.1| DNA polymerase III polC-type [Bacillus cereus HuB4-10]
Length = 1433
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLAKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|379746989|ref|YP_005337810.1| hypothetical protein OCU_22700 [Mycobacterium intracellulare ATCC
13950]
gi|378799353|gb|AFC43489.1| hypothetical protein OCU_22700 [Mycobacterium intracellulare ATCC
13950]
Length = 620
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 29/223 (13%)
Query: 128 TAIVFDIETTG------FSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH-- 178
T +V D+ETTG E + I EI + GG F TL++P+R +P V
Sbjct: 16 TFVVVDLETTGGRTKSAAGTEPDAITEIGAVKVRGGVVLGEFATLIDPQRSIPPQVVRLT 75
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GITT MV D P ++ ++P+ L + + Q G +L VAHNA FD+ F+ RC
Sbjct: 76 GITTAMVS--DAPTIDAVLPMFLEFARLDQ---GAVL-VAHNA-GFDIGFVRAAAQRCDI 128
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNC 294
P + T+ LAR ++ PS V L +L + + HRA+ D V+
Sbjct: 129 AWPRPQVLC-TVRLARRVLSR--EEAPS-VRLASLARLFAV-TTQPTHRALDDARATVDV 183
Query: 295 LSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L +++R+ + DL R + P + P +++K L
Sbjct: 184 LHALIERVGNQGVHTYADL--RSYLPD--VAPAQRRKRVLADG 222
>gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1]
gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum
Rt17-B1]
Length = 1390
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 19/177 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEI-AFQDLLGGENSTFQTLVNP-KRQVPNAHVHGITTDMV 185
T +V D+ETTG + ++ I+EI A + G F T V P K + ++ GIT DM+
Sbjct: 382 TYVVLDLETTGLNPRSDEIMEIGAVKTRDGKVIDEFHTFVRPNKLNKKSLNITGITEDML 441
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
D P + ++P LL ++K + VAHNA FD+ FL N S+ E N
Sbjct: 442 --KDAPDIMQVLPKLLEFIKDS-------ILVAHNA-DFDMTFLKNILSKSGIEF--NPP 489
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
++DTL L++ L++ N SL L +++G+ HRA+ D + +L
Sbjct: 490 YIDTLRLSQALLR----NKIKSFSLDKLVDHFGLGAF-QHHRALDDARVTVNVFWKL 541
>gi|350562772|ref|ZP_08931595.1| DNA polymerase III, epsilon subunit [Thioalkalimicrobium aerophilum
AL3]
gi|349779638|gb|EGZ33979.1| DNA polymerase III, epsilon subunit [Thioalkalimicrobium aerophilum
AL3]
Length = 490
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 25/179 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVC 186
++ DIETTG + IIEIA Q GE ++Q L+ P+R +P + GIT MV
Sbjct: 21 VLVDIETTGGKPGRDEIIEIAVQRFHEGEWVQSWQQLIRPQRTIPPWITRLTGITNAMVA 80
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW-- 244
D PR +++ L + + +FVAHNAR FD F+ ++F + NW
Sbjct: 81 --DAPRFDEIADELAALLADK-------VFVAHNAR-FDYGFIKHQFKQLGL----NWRA 126
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+ T+ L+++L + L L Y +P V HRAM DV + L +L+
Sbjct: 127 TTLCTVKLSKQLFPQYPRH-----GLDHLVARYDLPQVDR-HRAMGDVELMVAFLAKLS 179
>gi|46445870|ref|YP_007235.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia
amoebophila UWE25]
gi|46399511|emb|CAF22960.1| putative DNA polymerase III epsilon chain [Candidatus
Protochlamydia amoebophila UWE25]
Length = 249
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 25/169 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAH--VHGITTDMVC 186
I D ETTG + +RIIE+A G + + ++L+NP+ +P +H IT DMV
Sbjct: 10 ICIDCETTGLDPQQDRIIEVAVMCFDGNQVYAQMESLINPECPIPETSIAIHHITQDMV- 68
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP---NN 243
D P + ++P +L + + + H FD+ L R + +P
Sbjct: 69 -KDKPTINHVLPQILELISDH-------IIIGHGV-GFDIEILAVAAER--HGIPCKIRK 117
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
F+DTL +AR +S + SL+ LR+++ IPL G AHRAM+DV
Sbjct: 118 NRFLDTLRMARLYGESPVN------SLEYLRKHFNIPLEG-AHRAMSDV 159
>gi|423385126|ref|ZP_17362382.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1X1-2]
gi|423528518|ref|ZP_17504963.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB1-1]
gi|401638222|gb|EJS55973.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1X1-2]
gi|402450857|gb|EJV82683.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB1-1]
Length = 315
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNKV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ L ++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLVKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|347542459|ref|YP_004857096.1| DNA polymerase III PolC [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346985495|dbj|BAK81170.1| DNA polymerase III PolC [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 1398
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 93/193 (48%), Gaps = 25/193 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +VFDIETTGFS +E+IIEI + GE F T VNP++ +P + I+ +M
Sbjct: 381 TFVVFDIETTGFSNVSEKIIEIGAVKIKNGEIIDEFSTFVNPEKVIPFNITELTSISNEM 440
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V P +ED+I + G +L VAHN FD+ F+ + Y N+
Sbjct: 441 VAS--APVIEDIIGKFYDFC------SGAVL-VAHNI-DFDMSFIRRNGDKFGYSFKNSL 490
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
L DT+ + + L + L + ++ IPL + HRA+ D ++IL +
Sbjct: 491 L--DTIDICKLLFPE-----LKRYRLNVVAKHLAIPL-DNHHRAVDDARATAIILIKCFE 542
Query: 305 DLK----LSLCDL 313
LK LSL DL
Sbjct: 543 ILKSREILSLDDL 555
>gi|307243534|ref|ZP_07525682.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptostreptococcus stomatis DSM 17678]
gi|306493090|gb|EFM65095.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptostreptococcus stomatis DSM 17678]
Length = 1202
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 81/181 (44%), Gaps = 21/181 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS + I EI L G+ F T VNPK +P + IT DMV
Sbjct: 188 VVFDIETTGFSVTGDNITEIGAVLLEDGQIKDRFSTFVNPKMDIPYEVQELTNITNDMV- 246
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+ + + + K + VAHNA FD F+ + S + + L
Sbjct: 247 -EDAPGIEEALNKFMDFAKDS-------ILVAHNAY-FDTGFIAQKCSEVGLDYKHEKL- 296
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
DTL LAR LM + L L + I L G HRA+ D + + R +
Sbjct: 297 -DTLLLARVLMPH-----MKRFGLDRLTKALSINLSGH-HRAVNDAEATAQLFLRFIAMM 349
Query: 307 K 307
K
Sbjct: 350 K 350
>gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
gi|423441451|ref|ZP_17418357.1| DNA polymerase III polC-type [Bacillus cereus BAG4X2-1]
gi|423464525|ref|ZP_17441293.1| DNA polymerase III polC-type [Bacillus cereus BAG6O-1]
gi|423533867|ref|ZP_17510285.1| DNA polymerase III polC-type [Bacillus cereus HuB2-9]
gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
gi|402418112|gb|EJV50412.1| DNA polymerase III polC-type [Bacillus cereus BAG4X2-1]
gi|402420792|gb|EJV53063.1| DNA polymerase III polC-type [Bacillus cereus BAG6O-1]
gi|402464086|gb|EJV95786.1| DNA polymerase III polC-type [Bacillus cereus HuB2-9]
Length = 1433
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLAKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|348031040|ref|YP_004873726.1| DNA polymerase III subunit epsilon [Glaciecola nitratireducens
FR1064]
gi|347948383|gb|AEP31733.1| DNA polymerase III, epsilon subunit [Glaciecola nitratireducens
FR1064]
Length = 713
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 25/167 (14%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
V DIETTG ++ RI E+ ++GGE + +Q+L+NP+R++P+ + GI DMV
Sbjct: 546 VIDIETTGGRAQHHRITEVGIVKMIGGEVVAEWQSLINPERRIPHNITSLTGIDNDMVA- 604
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCS--YEVPNNWL 245
D P ++ + + +FVAHN +FD F+ EF+R Y P
Sbjct: 605 -DAPLFAEVADDIDEFTDG-------CVFVAHNV-NFDYGFIKEEFNRLERHYRRPK--- 652
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
L RE+ K S SL L +++GI + HRAM+D
Sbjct: 653 ----LCTVREMRKHYKG--LSSYSLANLTKHFGIDM-QRHHRAMSDA 692
>gi|340058634|emb|CCC52994.1| mitochondrial DNA polymerase I protein B,putative, (fragment),
partial [Trypanosoma vivax Y486]
Length = 1225
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVP--NAHVHGITTDMVCK 187
+VFDIE+TG + + I+EIA D + E S+F +LVNP+R +P + +H IT MV
Sbjct: 570 VVFDIESTGLNAATDSIVEIAAFDPV--EGSSFCSLVNPERPIPKQSTAIHHITDSMV-- 625
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGG--YILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
P++ ++ Y++ ++ I+ + HN S D P L F+R + +
Sbjct: 626 KAAPKLPEVTQAFARYLRLGEQSDSDEVIVMIGHNVFSLDEPLLRRAFNRENVSM-ERLF 684
Query: 246 FMDTLTLARELMK--------SGGSN-----LPSKVSLQALREYYGIPLVGSAHRAMADV 292
F D+L L + L + S G L + + L +L + + G++HRA D
Sbjct: 685 FCDSLALLKALKQELKGTLDDSKGERSILDILTTSLRLPSLVQGLRVEAEGASHRADTDS 744
Query: 293 NCLSLIL 299
L +L
Sbjct: 745 KTLWFVL 751
>gi|423418275|ref|ZP_17395364.1| DNA polymerase III polC-type [Bacillus cereus BAG3X2-1]
gi|401106548|gb|EJQ14509.1| DNA polymerase III polC-type [Bacillus cereus BAG3X2-1]
Length = 1433
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGIEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|358461144|ref|ZP_09171314.1| DNA polymerase III, epsilon subunit [Frankia sp. CN3]
gi|357074015|gb|EHI83510.1| DNA polymerase III, epsilon subunit [Frankia sp. CN3]
Length = 595
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 100/218 (45%), Gaps = 26/218 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTD 183
VT +VFD+ETTG I E + GGE + F TLV VP + GIT
Sbjct: 28 VTFVVFDLETTGTGPAESEITEFGAVKVRGGEVVAEFATLVRTSDGVPPLITVLTGITDA 87
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ P + +++P L + + + VAHNA FD+ FL R Y VP
Sbjct: 88 MLAT--APALAEVLPAFLEFSRD-------AVLVAHNA-PFDLSFLKAACERVGYPVP-A 136
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
W +DT LAR ++ S P+ L +L + +G HRA++D V+ L +
Sbjct: 137 WEHLDTARLARRIVTRDES--PNN-KLSSLAQLFGA-RTEPCHRALSDARATVDVLHGLF 192
Query: 300 QRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
+RL +L D+ E S ++P +++K L +
Sbjct: 193 ERLGNLGVTTLEDVHEY----SARVSPAQRRKRTLADD 226
>gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
Length = 483
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 26/215 (12%)
Query: 117 IAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN- 174
+ +N + T DIETTG + ++RI EI + G +QTLVNP+ ++
Sbjct: 1 MTKNTQILGSATFAFLDIETTGGNPSHDRITEIGIRFWRAGAVVGEWQTLVNPETRISPF 60
Query: 175 -AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEF 233
+ GIT DMV D P ED+ +L +K +FVAHNAR FD F+ EF
Sbjct: 61 IESLTGITNDMVA--DAPVFEDIAEVLEKQLKD-------TIFVAHNAR-FDYGFIKAEF 110
Query: 234 SRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN 293
R L T+ L+R+L + ++ AL E +G+ V HRA+ DV
Sbjct: 111 RRLGLLFSAKVLC--TVKLSRKLYPG-----FRRHNMDALIERHGLEQV-QRHRALGDVA 162
Query: 294 CL-----SLILQRLTFDLKLSLCDLIERGFTPSDL 323
+ ++++ + ++ ++ +L+++ PS+L
Sbjct: 163 AMMAFFEHALVEKGSGAMEAAIRNLLQKPSIPSNL 197
>gi|418576352|ref|ZP_13140498.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|379325414|gb|EHY92546.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 1442
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ I+
Sbjct: 422 KTATYVVFDVETTGLSNQYDKIIELAAVKVKDGEIIDKFERFSNPHERLSETIKNLTHIS 481
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ +
Sbjct: 482 DDMLV--DAPEIEEVLTEFKSWV-------GDAIFVAHNA-SFDMGFIDTGYEHVGIGAS 531
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + + +
Sbjct: 532 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYMFIK 584
Query: 302 L 302
+
Sbjct: 585 M 585
>gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621]
gi|423592186|ref|ZP_17568217.1| DNA polymerase III polC-type [Bacillus cereus VD048]
gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621]
gi|401232319|gb|EJR38821.1| DNA polymerase III polC-type [Bacillus cereus VD048]
Length = 1433
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGIEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123642441|sp|Q49X49.1|DPO3_STAS1 RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 1438
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ I+
Sbjct: 418 KTATYVVFDVETTGLSNQYDKIIELAAVKVKDGEIIDKFERFSNPHERLSETIKNLTHIS 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKSWV-------GDAIFVAHNA-SFDMGFIDTGYEHVGIGAS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + + +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYMFIK 580
Query: 302 L 302
+
Sbjct: 581 M 581
>gi|423592479|ref|ZP_17568510.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD048]
gi|401229855|gb|EJR36364.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD048]
Length = 315
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P + +++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIAEVLPLFLAFLDTN-------IIVAHNA-SFDMRFLKSNVNMLGLPEPKNNV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|423470032|ref|ZP_17446776.1| DNA polymerase III polC-type [Bacillus cereus BAG6O-2]
gi|402437284|gb|EJV69308.1| DNA polymerase III polC-type [Bacillus cereus BAG6O-2]
Length = 1433
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGIEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|423598871|ref|ZP_17574871.1| DNA polymerase III polC-type [Bacillus cereus VD078]
gi|401237141|gb|EJR43598.1| DNA polymerase III polC-type [Bacillus cereus VD078]
Length = 1433
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGIEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|423452881|ref|ZP_17429734.1| DNA polymerase III polC-type [Bacillus cereus BAG5X1-1]
gi|401139440|gb|EJQ47002.1| DNA polymerase III polC-type [Bacillus cereus BAG5X1-1]
Length = 1433
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGIEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|311742833|ref|ZP_07716641.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM
15272]
gi|311313513|gb|EFQ83422.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM
15272]
Length = 569
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 100/221 (45%), Gaps = 22/221 (9%)
Query: 122 DLAKL---VTAIVFDIETTGFS-RENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN-- 174
DL +L VT V D+ETTG S ++ RI EI + GGE FQTLVNP +P
Sbjct: 22 DLGRLLVDVTFCVVDLETTGGSPQKGSRITEIGAVLVRGGEVLGEFQTLVNPDESIPAFI 81
Query: 175 AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFS 234
+ GIT MV + PR+ + +P L + + G +L VAHNA FD FL + +
Sbjct: 82 TVLTGITDQMVVQ--APRIAEALPSFLEFAR------GSVL-VAHNA-PFDTGFLRHAAA 131
Query: 235 RCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNC 294
P + +DT LAR ++ +G L L + G + HRA++D
Sbjct: 132 ELQIPWP-RFEVLDTALLARRVLLAGEVR---NCKLGTLAAHVGATTTPN-HRALSDARA 186
Query: 295 LSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLV 335
+L L L +E + + P +++K L
Sbjct: 187 TVDVLHHLFERLGPLGVHSLEEARAYTSTVTPAQRRKRHLA 227
>gi|269219422|ref|ZP_06163276.1| exonuclease, DNA polymerase III, epsilon subunit family
[Actinomyces sp. oral taxon 848 str. F0332]
gi|269211118|gb|EEZ77458.1| exonuclease, DNA polymerase III, epsilon subunit family
[Actinomyces sp. oral taxon 848 str. F0332]
Length = 206
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 131 VFDIETTGFSRENERIIEIA--FQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKP 188
V D+ETTG S +RI+EI D G +Q+LVNP R + VHG+T V
Sbjct: 5 VVDVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSLVNPLRGMGAVFVHGLTDADVA-- 62
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
D P + DL+P + R VAHNA +FDV FL F+R Y
Sbjct: 63 DAPTLADLLPQIRGLFSGRA-------LVAHNA-TFDVGFLNASFARAGY 104
>gi|167037626|ref|YP_001665204.1| DNA polymerase III PolC [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320116041|ref|YP_004186200.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166856460|gb|ABY94868.1| DNA polymerase III, alpha subunit [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929132|gb|ADV79817.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 1407
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
VFDIETTG S N+ IIEI + G+ TF+T VNPK + + + GI MV
Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESMV-- 453
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P +E+++P L + + + VAHNA +FDV F+ ++ + + V N L
Sbjct: 454 KDAPSIEEILPKFLEFASNS-------VLVAHNA-NFDVSFIKSKAKKFNLNVNNAVL-- 503
Query: 248 DTLTLARELMKS 259
DTL L+R L K
Sbjct: 504 DTLELSRHLYKD 515
>gi|289424040|ref|ZP_06425828.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptostreptococcus anaerobius 653-L]
gi|289155559|gb|EFD04236.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptostreptococcus anaerobius 653-L]
Length = 1440
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 24/192 (12%)
Query: 112 DIEQII-AENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPK 169
D + I+ A ++DL + T +VFDIETTG S ++ + EI + E +F T VNPK
Sbjct: 410 DTDTIVNANDRDLDQ--TFVVFDIETTGLSPHSDNLTEIGAVKVQNCEIVDSFSTFVNPK 467
Query: 170 RQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVP 227
+ + IT +MV D P +E+ +P L + K + VAHNA FD
Sbjct: 468 MDISYQIQELTRITNEMV--KDAPSLEEALPEFLEFAKDS-------VLVAHNA-DFDTG 517
Query: 228 FLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHR 287
F+ + + E N+ +DTLTLAR + +NL + SL + + G+ L G HR
Sbjct: 518 FIYQKCQQLGLEY--NFEKVDTLTLARII----NTNL-KRFSLDKVCKEMGVVLAGH-HR 569
Query: 288 AMADVNCLSLIL 299
A+ D + +
Sbjct: 570 AVNDAQATAEVF 581
>gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10]
gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10]
Length = 1433
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 97/213 (45%), Gaps = 31/213 (14%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S IIE+A + GGE F++ NP + + GIT DM
Sbjct: 418 TYVVFDVETTGLSAVYNTIIELAAVKVQGGEIIDRFESFANPHEPLSPTIIDLTGITDDM 477
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P + D++ K + G + VAHNA +FD+ FL + + + N
Sbjct: 478 VA--DAPEIHDVL-------KDFKAWCGNDILVAHNA-AFDMAFLDAGYQKAGMDKAANP 527
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL + R L + L L + + I LV S HRA+ D +L ++
Sbjct: 528 V-IDTLEMGRMLYPTF-----KNYRLNTLCKKFNIELV-SHHRAIYDAEATGHLLWKM-- 578
Query: 305 DLKLSLCDLIERGFTPSDLIN----PKKKKKSK 333
+ D +E+G T +N P KK +
Sbjct: 579 -----VRDAVEKGITTHSALNDQSSPDDYKKQR 606
>gi|423669181|ref|ZP_17644210.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM034]
gi|423674690|ref|ZP_17649629.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM062]
gi|401299738|gb|EJS05334.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM034]
gi|401309272|gb|EJS14637.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM062]
Length = 315
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYCNHELVDQFVSYVNPERPIPSRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P + +++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIAEVLPLFLAFLDTN-------IIVAHNA-SFDMRFLKSNVNMLGLPEPKNNV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|421470763|ref|ZP_15919119.1| exonuclease [Burkholderia multivorans ATCC BAA-247]
gi|400227002|gb|EJO57027.1| exonuclease [Burkholderia multivorans ATCC BAA-247]
Length = 375
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG + RI EI ++ ST+ TLVNP + +P + GI+ MV
Sbjct: 16 VFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVR- 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P +L P L + + LFVAHNA SFD FL EF R + N +
Sbjct: 75 -DAPSFAELAPALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAGFAF--NPDVL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL 295
T+ L+R L S+ L AL +G+ + + HRA+AD + L
Sbjct: 124 CTVRLSRALFPR-----ESRHGLDALIARHGL-VPAARHRALADADLL 165
>gi|355670185|ref|ZP_09057040.1| hypothetical protein HMPREF9469_00077 [Clostridium citroniae
WAL-17108]
gi|354816257|gb|EHF00845.1| hypothetical protein HMPREF9469_00077 [Clostridium citroniae
WAL-17108]
Length = 1539
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 21/191 (10%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D +Q++ +K + + +VFDIETTGFS + +IIEI ++ G+ F VNP
Sbjct: 499 DTKQLVENSKGQSFEDSFVVFDIETTGFSPKKNKIIEIGAVKVVDGKITDRFSAFVNPDV 558
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + GI MV P+++ ++P L +V G + VAHNA FDV F
Sbjct: 559 PIPFDIEKLTGINDAMVLPH--PKIDVILPQFLEFV-------GDSVLVAHNA-GFDVGF 608
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
I+ F+ +P N +DT+T+AR L+ NL ++ L + + I L + HRA
Sbjct: 609 -ISHFAE-EQGLPFNPTVLDTVTIARLLL----PNL-NRFKLDTVAKALNISLA-NHHRA 660
Query: 289 MADVNCLSLIL 299
+ D + I
Sbjct: 661 VDDAGATAEIF 671
>gi|326389440|ref|ZP_08211007.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
JW 200]
gi|325994445|gb|EGD52870.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
JW 200]
Length = 1407
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
VFDIETTG S N+ IIEI + G+ TF+T VNPK + + + GI MV
Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESMV-- 453
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P +E+++P L + + + VAHNA +FDV F+ ++ + + V N L
Sbjct: 454 KDAPSIEEILPKFLEFASNS-------VLVAHNA-NFDVSFIKSKAKKFNLNVNNAVL-- 503
Query: 248 DTLTLARELMKS 259
DTL L+R L K
Sbjct: 504 DTLELSRHLYKD 515
>gi|347526390|ref|YP_004833137.1| DNA polymerase III subunit epsilon [Sphingobium sp. SYK-6]
gi|345135071|dbj|BAK64680.1| DNA polymerase III epsilon subunit [Sphingobium sp. SYK-6]
Length = 233
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 22/187 (11%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLG--GENSTFQTLVNPKRQVPNAH--VHGITTDM 184
IVFD ETTG +R++EI +L+ +T+ NP+R +P+A VHG++
Sbjct: 4 IVFDTETTGLDPLTGDRLVEIGCVELVNRIPTGATYHCYFNPERAMPSAAEAVHGLSDRF 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D PR + LL ++ + VAHNAR FD FL E RC + +
Sbjct: 64 LA--DKPRFAEKAAELLDFLGDDK-------LVAHNAR-FDFGFLNAELERCRLPLVDLE 113
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLILQRLT 303
+D+LT+AR L +K SL AL YGI H A+ D L+ + LT
Sbjct: 114 RMIDSLTIARTLHPG------AKHSLDALCSRYGIDRSHRVKHGALLDAELLAQLYIELT 167
Query: 304 FDLKLSL 310
++ L
Sbjct: 168 GGRQIGL 174
>gi|288959104|ref|YP_003449445.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
gi|288911412|dbj|BAI72901.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
sp. B510]
Length = 702
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 28/181 (15%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLGGE---NSTFQTLVNPKRQVPNAHV--HGITTD 183
+VFD ETTG S + I++IA ++GG TF LV+PKR +P + HGIT
Sbjct: 510 VVFDTETTGLSPSAGDEIVQIAAVRIVGGRILTGETFNMLVDPKRPIPPESIPFHGITDA 569
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFL--INEFSRCSYEVP 241
MV P ++ ++P +V G +L VAHNA +FD+ FL + +++ P
Sbjct: 570 MVAGK--PTIDTVLPQFRSFVS------GAVL-VAHNA-AFDLKFLKMKERAAGVTFDCP 619
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ L+R L+ + G + +L + + GI +V H A+ D + + R
Sbjct: 620 ----VLDTMLLSRMLLGNDGDH-----TLDGIAQRLGIAVV-DRHTALGDSLVTAAVFLR 669
Query: 302 L 302
+
Sbjct: 670 M 670
>gi|390454031|ref|ZP_10239559.1| DNA polymerase III polC-type (PolIII) [Paenibacillus peoriae KCTC
3763]
Length = 1438
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 87/184 (47%), Gaps = 20/184 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLL-GGENSTFQTLVNPKRQVPN--AHVHGIT 181
K T +VFDIETTG S +IIEIA + G E + T VNP ++P + I
Sbjct: 417 KAATYVVFDIETTGLSVTQNKIIEIAAVKIYEGKEIDRYATFVNPHERIPYNIQQLTNIN 476
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
+MV D P +E P++ +V G + VAHNAR FDV F+ +
Sbjct: 477 DEMV--KDAPDVE---PVMKEFVAF----AGDAVLVAHNAR-FDVGFIQAMLRKMGLPEM 526
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL LAR L + ++ L L Y + L S HRA+ D L+ +L
Sbjct: 527 TNPV-LDTLELARLLFPTMKNH-----RLNTLTTKYKVAL-ESHHRAIDDTVALTEVLNG 579
Query: 302 LTFD 305
L D
Sbjct: 580 LLND 583
>gi|372270650|ref|ZP_09506698.1| DNA polymerase III subunit epsilon [Marinobacterium stanieri S30]
Length = 674
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 33/207 (15%)
Query: 100 TEISKIQ---RIQHYDIEQIIAENKDLAK----LVTAIVFDIETTGFS-RENERIIEIAF 151
T ++K++ + I Q+ ++DLA + +VFD ETTG R +RII +A
Sbjct: 451 TPVAKVRSRPEFHDFSIAQLAPPDEDLASRPLDQLELVVFDTETTGLDLRGGDRIISLAG 510
Query: 152 QDLLGGE---NSTFQTLVNPKRQVPNAH--VHGITTDMVCKPDVPRMEDLIPILLHYVKS 206
+L G + +F LVNP R +P A +HG+T + V + P +E ++P Y
Sbjct: 511 CRILNGRLLADDSFDQLVNPGRSIPQASTAIHGLTDEDVAQ--APPIEVVLPNFHRYA-- 566
Query: 207 RQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPS 266
G + VAHNA +FDV L + + S E N +DTL L+R L + +
Sbjct: 567 -----GNAVLVAHNA-AFDV--LALQLAGPSIEFTNP--VLDTLFLSRALDPTLDGH--- 613
Query: 267 KVSLQALREYYGIPL-VGSAHRAMADV 292
L AL E + + G+ H A+ D
Sbjct: 614 --GLDALAERFELQFPPGTRHTALGDA 638
>gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
17616]
gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
17616]
Length = 375
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG + RI EI ++ ST+ TLVNP + +P + GI+ MV
Sbjct: 16 VFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVR- 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P +L P L + + LFVAHNA SFD FL EF R + N +
Sbjct: 75 -DAPSFAELAPALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAGFAF--NPDVL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL 295
T+ L+R L S+ L AL +G+ + + HRA+AD + L
Sbjct: 124 CTVRLSRALFPR-----ESRHGLDALIARHGL-VPAARHRALADADLL 165
>gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1]
gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum
reducens MI-1]
Length = 1426
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 22/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVP--NAHVHGITTDMVC 186
++ D ETTGFS + + IIEI L GE F TLVNPK+++P + GIT +MV
Sbjct: 415 VIIDFETTGFSPQTDEIIEIGAVKYLNGEEVGRFGTLVNPKKEIPFEVTKLTGITDEMV- 473
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFL-INEFSRCSYEVPNNWL 245
D P ++ + L ++ G + VAHNA SFD+ FL + EV N +
Sbjct: 474 -KDAPDGKEALTALSEFM-------GEAVLVAHNA-SFDLSFLRVGLRKYLKQEVTNPAI 524
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
DTL +AR L NL + L L + + I L + HRA+ D + + + Q
Sbjct: 525 --DTLGVARVLF----PNLKNH-KLNTLVKEFKIELT-NHHRAVDDASATAKLWQ 571
>gi|423522352|ref|ZP_17498825.1| DNA polymerase III polC-type [Bacillus cereus HuA4-10]
gi|401175046|gb|EJQ82249.1| DNA polymerase III polC-type [Bacillus cereus HuA4-10]
Length = 1433
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGIEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|423367861|ref|ZP_17345293.1| DNA polymerase III polC-type [Bacillus cereus VD142]
gi|401082722|gb|EJP90987.1| DNA polymerase III polC-type [Bacillus cereus VD142]
Length = 1433
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGIEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4]
gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis
KBAB4]
Length = 1433
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGIEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|357973976|ref|ZP_09137947.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. KC8]
Length = 234
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLG--GENSTFQTLVNPKRQVPNAH--VHGITTDM 184
IVFD ETTG S ++ R++EI +L+ T NP R +P+ VHG++
Sbjct: 4 IVFDTETTGLSPKDGHRLVEIGCVELVNRVETGRTHHVYFNPNRSMPSEAEAVHGLSAIF 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P D LL ++ G VAHNA +FD FL E +C E +
Sbjct: 64 LS--DKPSFADEAGALLDFI-------GDAPLVAHNA-TFDFTFLNAELEQCGLETISLT 113
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLILQRLT 303
+DTL +AR+ +K SL AL YGI H A+ D LS + LT
Sbjct: 114 RMIDTLAIARQRHPG------AKHSLDALCSRYGIDRSHRVKHGALLDAQLLSQLYVELT 167
Query: 304 FDLKLSLCDLIERGF-TPSDL 323
++ L E TPSD+
Sbjct: 168 GGRQIGLSLRSEPAAETPSDM 188
>gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
gi|423488993|ref|ZP_17465675.1| DNA polymerase III polC-type [Bacillus cereus BtB2-4]
gi|423494718|ref|ZP_17471362.1| DNA polymerase III polC-type [Bacillus cereus CER057]
gi|423498490|ref|ZP_17475107.1| DNA polymerase III polC-type [Bacillus cereus CER074]
gi|423511852|ref|ZP_17488383.1| DNA polymerase III polC-type [Bacillus cereus HuA2-1]
gi|423518508|ref|ZP_17494989.1| DNA polymerase III polC-type [Bacillus cereus HuA2-4]
gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
gi|401150811|gb|EJQ58263.1| DNA polymerase III polC-type [Bacillus cereus CER057]
gi|401160539|gb|EJQ67917.1| DNA polymerase III polC-type [Bacillus cereus CER074]
gi|401160716|gb|EJQ68091.1| DNA polymerase III polC-type [Bacillus cereus HuA2-4]
gi|402432241|gb|EJV64300.1| DNA polymerase III polC-type [Bacillus cereus BtB2-4]
gi|402450113|gb|EJV81947.1| DNA polymerase III polC-type [Bacillus cereus HuA2-1]
Length = 1433
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGIEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|221201212|ref|ZP_03574252.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
CGD2M]
gi|221179062|gb|EEE11469.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
CGD2M]
Length = 398
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG + RI EI ++ ST+ TLVNP + +P + GI+ MV
Sbjct: 39 VFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVR- 97
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P +L P L + + LFVAHNA SFD FL EF R + + +
Sbjct: 98 -DAPSFAELAPALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAGFAFNPD--VL 146
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL 295
T+ L+R L S+ L AL +G+ + + HRA+AD + L
Sbjct: 147 CTVRLSRALFPR-----ESRHGLDALIARHGL-VPAARHRALADADLL 188
>gi|423661343|ref|ZP_17636512.1| DNA polymerase III polC-type [Bacillus cereus VDM022]
gi|401301384|gb|EJS06973.1| DNA polymerase III polC-type [Bacillus cereus VDM022]
Length = 1433
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGIEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|334143935|ref|YP_004537091.1| DNA polymerase III subunit epsilon [Thioalkalimicrobium cyclicum
ALM1]
gi|333964846|gb|AEG31612.1| DNA polymerase III, epsilon subunit [Thioalkalimicrobium cyclicum
ALM1]
Length = 490
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 26/202 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVC 186
++ DIETTG + IIEIA Q GE ++Q L+ P R +P + GI+ MV
Sbjct: 21 VLVDIETTGGKPGLDEIIEIAVQRFHQGEWVQSWQQLIRPHRTIPPWITRLTGISNAMVA 80
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ P E++ L + + +FVAHNAR FD F+ ++F R +
Sbjct: 81 --EAPLFEEIAEDLAALLADK-------VFVAHNAR-FDYGFIKHQFKRIGIDWRAT--T 128
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+ T+ L+R+L + L L Y +P V HRAM DV+ ++ L +LT ++
Sbjct: 129 LCTVKLSRQLFPEH-----KRHGLDHLVTRYALPQV-DRHRAMGDVDLVAAFLAQLTHEV 182
Query: 307 KLS-----LCDLIERGFTPSDL 323
L +L+ + P++L
Sbjct: 183 SADRIWSLLAELLAQPSLPANL 204
>gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
Length = 1435
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 419 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 478
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 479 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGIEKTKNP 528
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 529 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 579
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 580 -----LKDVIEKGFEYHDQLN 595
>gi|414160570|ref|ZP_11416836.1| DNA polymerase III polC-type [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410878090|gb|EKS25979.1| DNA polymerase III polC-type [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 1437
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 20/181 (11%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ I+
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHDGEIIDKFERFSNPHERLSETIKNLTHIS 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
+M+ D P ++D++ +V G +FVAHNA SFD+ F+ + R
Sbjct: 478 DEMLV--DAPEIDDVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERAGLGHY 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEFG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 L 302
+
Sbjct: 581 M 581
>gi|354559119|ref|ZP_08978371.1| DNA polymerase III, alpha subunit [Desulfitobacterium
metallireducens DSM 15288]
gi|353544289|gb|EHC13744.1| DNA polymerase III, alpha subunit [Desulfitobacterium
metallireducens DSM 15288]
Length = 1449
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 21/191 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T V D+ETTGFS E+I EI G+ F VNP++ +P V IT +M
Sbjct: 426 TYCVLDLETTGFSAVTEKITEIGIMKFQRGKVIDEFSCFVNPEKSIPARVVEVTNITDEM 485
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V + ++ + P +L +++ + VAHNA FD+ FL + Y+ ++
Sbjct: 486 V--KNAETIDKVFPKMLDFIEGS-------VLVAHNAE-FDIGFLKHNAKVLGYDF--DY 533
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
++DTL+LA+E+ + L + + GI V AHRA+ DV+ + + +
Sbjct: 534 TYLDTLSLAKEIFPDFKT-----YKLGRIAKNLGIK-VEVAHRALDDVDTTVKVFKAMLE 587
Query: 305 DLKLSLCDLIE 315
LK + +E
Sbjct: 588 KLKQRGAETLE 598
>gi|423483408|ref|ZP_17460098.1| DNA polymerase III polC-type [Bacillus cereus BAG6X1-2]
gi|401140959|gb|EJQ48514.1| DNA polymerase III polC-type [Bacillus cereus BAG6X1-2]
Length = 1433
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGIEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|381164959|ref|ZP_09874189.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora azurea NA-128]
gi|379256864|gb|EHY90790.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora azurea NA-128]
Length = 566
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTD 183
VT ++ D+ETTG + + I EI + GGE F TLV+P + +P V GITT
Sbjct: 15 VTFVIVDLETTGGAPDGGNITEIGAVKVRGGEVLGEFATLVDPGQPIPPQIVALTGITTA 74
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV PR+E ++P L + + + VAHNA FD FL Y P
Sbjct: 75 MVRS--APRIEHVLPAFLAFAEG-------AVLVAHNA-GFDTSFLKAACRAHGYAWPTP 124
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVS-LQALREYYGIPLVGSAHRAMAD----VNCLSLI 298
+ + TL LAR +++ G ++S L AL P HRA+ D V+ L +
Sbjct: 125 -VVLCTLKLARRVLR--GEVRSHRLSTLAALFGASTTP----THRALDDARATVDVLHGL 177
Query: 299 LQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L+R+ SL +L++ + P + P +++K L +
Sbjct: 178 LERVGPLGVQSLEELLD--YLPD--VTPAQRRKRDLAKD 212
>gi|333923687|ref|YP_004497267.1| DNA polymerase III subunit alpha [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333749248|gb|AEF94355.1| DNA polymerase III, alpha subunit [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 1421
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 100/214 (46%), Gaps = 29/214 (13%)
Query: 99 KTEISKIQRIQHYDIEQII------AENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQ 152
K+ I I ++ Y I+ I ++N L L T +V D ETTGFS + + IIEI
Sbjct: 374 KSGIKLIYGVEGYLIDDGITTVMHLSDNGKLTDL-TYVVLDFETTGFSPQTDEIIEIGAV 432
Query: 153 DLLGG-ENSTFQTLVNPKRQVP--NAHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQK 209
+ G E F TLV P +++P + + GIT DMV D P + L ++
Sbjct: 433 KFINGMEVDRFGTLVKPDKEIPFEVSKLTGITLDMV--KDAPDARQALAALREFI----- 485
Query: 210 PGGYILFVAHNARSFDVPFLINEFSR-CSYEVPNNWLFMDTLTLARELMKSGGSNLPSKV 268
G + VAHNA +FD+ FL F + EV N +DTL AR L+ ++
Sbjct: 486 --GDAVLVAHNA-AFDLSFLKVGFRKYLQVEVTNQ--VVDTLGTARVLLPHLKNH----- 535
Query: 269 SLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
L L + + I L + HRA+ D + Q L
Sbjct: 536 KLDTLVKEFKIEL-ANHHRAVDDAAATGKLWQVL 568
>gi|126437831|ref|YP_001073522.1| DNA polymerase III subunit epsilon [Mycobacterium sp. JLS]
gi|126237631|gb|ABO01032.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS]
Length = 330
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 19/172 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLL--GGENSTFQTLVNPKRQVPNAHVHGITTDMVCKP 188
V D+ET+GF RI+ +A + G + TL+NP HVHG+T +M+
Sbjct: 19 VVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPGVDPGPTHVHGLTAEML--E 76
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
PR D++ L ++ R VAHN FD FL E E+P + + M
Sbjct: 77 GAPRFGDIVADLAELLRGRT-------LVAHNV-GFDYSFLTAEAELVGAELPIDSV-MC 127
Query: 249 TLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
T+ LAR L G NL L+ L ++G+P + H A+ D L+ IL+
Sbjct: 128 TVELARRL-DLGTENL----RLETLAAHWGVPQL-KPHDALDDAQVLAQILK 173
>gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
17616]
gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
17616]
Length = 398
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG + RI EI ++ ST+ TLVNP + +P + GI+ MV
Sbjct: 39 VFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVR- 97
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P +L P L + + LFVAHNA SFD FL EF R + N +
Sbjct: 98 -DAPSFAELAPALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAGFAF--NPDVL 146
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL 295
T+ L+R L S+ L AL +G+ + + HRA+AD + L
Sbjct: 147 CTVRLSRALFPR-----ESRHGLDALIARHGL-VPAARHRALADADLL 188
>gi|416938773|ref|ZP_11934332.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49]
gi|325524698|gb|EGD02688.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49]
Length = 374
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG S RI EI ++ ST+ +LVNP + +P + GI+ MV
Sbjct: 16 VFVDLETTGGSSVEHRITEIGVVEIGPLGVSTWTSLVNPGQSIPPFIQQLTGISEAMVR- 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P L P L + + LFVAHNA SFD FL EF R + +
Sbjct: 75 -DAPSFASLAPALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAGLAFNPD--VL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL 295
T+ L+R L S+ L AL E +G+ + + HRA+AD + L
Sbjct: 124 CTVRLSRALFPR-----ESRHGLDALIERHGL-VPAARHRALADADLL 165
>gi|310827165|ref|YP_003959522.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
gi|308738899|gb|ADO36559.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
Length = 1369
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 21/176 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+ FD+ETTG + IIEIA + TF +VNP R +P ++ GIT MV
Sbjct: 355 VFFDLETTGLIPGKDNIIEIAAVKIKNKHIVDTFSKIVNPHRPIPPFITNLTGITNQMV- 413
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D E + + G ++ VAHNA+ FD+ F+ E + ++ + NN +
Sbjct: 414 -EDGEEEEAAVKAFCEFC-------GDLILVAHNAK-FDMGFM--EIALNAHHLENNITY 462
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL ++R L+ + +K +L+ L Y+ + + G HRA+ D C + I +L
Sbjct: 463 IDTLAMSRTLIPT-----INKHNLKKLASYFKVDM-GHHHRALDDSVCSAKIFVKL 512
>gi|221206334|ref|ZP_03579347.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
gi|221173643|gb|EEE06077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
Length = 375
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG + RI EI ++ ST+ TLVNP + +P + GI+ MV
Sbjct: 16 VFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVR- 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P +L P L + + LFVAHNA SFD FL EF R + + +
Sbjct: 75 -DAPSFAELAPALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAGFAFNPD--VL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL 295
T+ L+R L S+ L AL +G+ + + HRA+AD + L
Sbjct: 124 CTVRLSRALFPR-----ESRHGLDALIARHGL-VPAARHRALADADLL 165
>gi|114328806|ref|YP_745963.1| DNA polymerase III subunit epsilon [Granulibacter bethesdensis
CGDNIH1]
gi|114316980|gb|ABI63040.1| DNA polymerase III, epsilon chain [Granulibacter bethesdensis
CGDNIH1]
Length = 225
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 89/183 (48%), Gaps = 26/183 (14%)
Query: 129 AIVFDIETTGFSR-ENERIIEIA----FQDLLGGENSTFQTLVNPKRQVPN--AHVHGIT 181
+++FD ETTGF +RI+EIA F DL G +TF TLV+P R VP VHG T
Sbjct: 4 SVLFDTETTGFDPLTGDRILEIAALELFNDLPTG--NTFHTLVDPCRDVPEEATRVHGFT 61
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
+M+ P D++ LL + G +AHNA FD FL EF+R
Sbjct: 62 AEMLRG--KPLFADIVEDLLAFF-------GRDPLIAHNA-PFDFNFLNAEFARLGKPKL 111
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQ 300
+ +DTL +A K+ +P+ SL AL + I L + H A+ D L+ +
Sbjct: 112 DPARMIDTLVMA----KARFPGMPN--SLDALCRRFSIDLSQRTTHNALLDCKLLAEVYI 165
Query: 301 RLT 303
LT
Sbjct: 166 ELT 168
>gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
574]
gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
574]
Length = 1421
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 100/214 (46%), Gaps = 29/214 (13%)
Query: 99 KTEISKIQRIQHYDIEQII------AENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQ 152
K+ I I ++ Y I+ I ++N L L T +V D ETTGFS + + IIEI
Sbjct: 374 KSGIKLIYGVEGYLIDDGITTVMHLSDNGKLTDL-TYVVLDFETTGFSPQTDEIIEIGAV 432
Query: 153 DLLGG-ENSTFQTLVNPKRQVP--NAHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQK 209
+ G E F TLV P +++P + + GIT DMV D P + L ++
Sbjct: 433 KFINGMEVDRFGTLVKPDKEIPFEVSKLTGITLDMV--KDAPDARQALAALREFI----- 485
Query: 210 PGGYILFVAHNARSFDVPFLINEFSR-CSYEVPNNWLFMDTLTLARELMKSGGSNLPSKV 268
G + VAHNA +FD+ FL F + EV N +DTL AR L+ ++
Sbjct: 486 --GDAVLVAHNA-AFDLSFLKVGFRKYLQVEVTNQ--VVDTLGTARVLLPHLKNH----- 535
Query: 269 SLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
L L + + I L + HRA+ D + Q L
Sbjct: 536 KLDTLVKEFKIEL-ANHHRAVDDAAATGKLWQVL 568
>gi|221213616|ref|ZP_03586590.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
gi|221166405|gb|EED98877.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
Length = 375
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ D+ETTG + RI EI ++ ST+ TLVNP + +P + GI+ MV
Sbjct: 16 VFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVR- 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P +L P L + + LFVAHNA SFD FL EF R + + +
Sbjct: 75 -DAPSFAELAPALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAGFAFNPD--VL 123
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL 295
T+ L+R L S+ L AL +G+ + + HRA+AD + L
Sbjct: 124 CTVRLSRALFPR-----ESRHGLDALIARHGL-VPAARHRALADADLL 165
>gi|423669392|ref|ZP_17644421.1| DNA polymerase III polC-type [Bacillus cereus VDM034]
gi|423674429|ref|ZP_17649368.1| DNA polymerase III polC-type [Bacillus cereus VDM062]
gi|401298519|gb|EJS04119.1| DNA polymerase III polC-type [Bacillus cereus VDM034]
gi|401309980|gb|EJS15313.1| DNA polymerase III polC-type [Bacillus cereus VDM062]
Length = 1433
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGIEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDKLN 593
>gi|331269632|ref|YP_004396124.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
gi|329126182|gb|AEB76127.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum BKT015925]
Length = 1443
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 24/197 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +VFD+ETTGFS ++IIEI + G +F T VNP+ +VP + IT D
Sbjct: 429 TFVVFDLETTGFSSAYDKIIEIGAVKIKNGNIIDSFSTFVNPEIKVPYNITELTSITNDD 488
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D ++ ++P + + G + VAHNA +FD+ F+ + + ++ N+
Sbjct: 489 VKNADT--IDSILPKFIEFC-------GDSVLVAHNA-NFDMSFIRKNCNDLNIDI--NY 536
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ---R 301
MDT+ LA+ L + L + ++ G+ L + HRA+ D IL +
Sbjct: 537 TVMDTVPLAKFLFPE-----LKRYKLNTIAKHLGVSL-ENHHRAVDDAKATGDILLCCFK 590
Query: 302 LTFDLKLSLCDLIERGF 318
L D+K++ D + + F
Sbjct: 591 LLDDMKITSLDSLNKEF 607
>gi|157866092|ref|XP_001681752.1| putative mitochondrial DNA polymerase I protein B [Leishmania major
strain Friedlin]
gi|68125051|emb|CAJ02395.1| putative mitochondrial DNA polymerase I protein B [Leishmania major
strain Friedlin]
Length = 1429
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 23/189 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVP--NAHVHGITTDMVCK 187
+ FDIETTG + + I+E+A D + ENSTF TLVNP+R + +H IT MV
Sbjct: 765 VFFDIETTGLNPSTDAIVEVAMFDPI--ENSTFHTLVNPQRPITPRTVGIHHITNAMV-- 820
Query: 188 PDVPRMEDLIPILLHYV---KSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP-NN 243
D P ++ + + Y+ K+ P ++ V HN S D P L + E +
Sbjct: 821 RDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRALECHAPECQLDG 880
Query: 244 WLFMDTLTL-------ARELMKSGGSNLP------SKVSLQALREYYGIPLVGSAHRAMA 290
LF D+L L R M++ +N P S + L L + G HRA
Sbjct: 881 ILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLITALNVRPEGDLHRADT 940
Query: 291 DVNCLSLIL 299
D L +L
Sbjct: 941 DTKALWYVL 949
>gi|433772240|ref|YP_007302707.1| DNA polymerase III, epsilon subunit [Mesorhizobium australicum
WSM2073]
gi|433664255|gb|AGB43331.1| DNA polymerase III, epsilon subunit [Mesorhizobium australicum
WSM2073]
Length = 242
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 76/156 (48%), Gaps = 23/156 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLG--GENSTFQTLVNPKRQVPNAH---VHGITT-D 183
I+FD ETTG ++R+IE+ +L+ TF +NP+ + +A VHGI+ D
Sbjct: 4 IIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHAEAQSVHGISAAD 63
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
+ KP + + L + + + VAHNA +FD+ FL EF R + +N
Sbjct: 64 LAGKPSFAEIAEE---WLKFTEGAK-------LVAHNA-TFDIGFLNVEFGRLGHPPVDN 112
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGI 279
L +DTL LAR G + SL AL YGI
Sbjct: 113 GLVVDTLALARRKHPMGPN------SLDALCRRYGI 142
>gi|359411557|ref|ZP_09204022.1| DNA polymerase III polC-type [Clostridium sp. DL-VIII]
gi|357170441|gb|EHI98615.1| DNA polymerase III polC-type [Clostridium sp. DL-VIII]
Length = 1447
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 93/182 (51%), Gaps = 25/182 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T V D+ETTGFS + E+I EI + G+ F T VNP++ +P + IT +M
Sbjct: 423 TYCVLDLETTGFSPKTEKITEIGIMKIKDGKVIDKFSTFVNPEKSIPMRVVEITNITDEM 482
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D + ++ P +L +++ + VAHNA FD+ FL + ++ ++
Sbjct: 483 V--RDAETIGEVFPKMLEFIEG-------CVLVAHNAE-FDINFLKHNARVLGHDF--DF 530
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN----CLSLILQ 300
++DTL+LA+++ S L + + GI V AHRA+ DV+ +++L+
Sbjct: 531 TYLDTLSLAQDIFPEFKS-----YKLGRIAKNLGIK-VEVAHRALDDVDTTVKVFNIMLE 584
Query: 301 RL 302
+L
Sbjct: 585 KL 586
>gi|335047366|ref|ZP_08540387.1| exonuclease, DNA polymerase III, epsilon subunit family [Parvimonas
sp. oral taxon 110 str. F0139]
gi|333761174|gb|EGL38729.1| exonuclease, DNA polymerase III, epsilon subunit family [Parvimonas
sp. oral taxon 110 str. F0139]
Length = 307
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 21/194 (10%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D +I+ K+ T +VFDIETTG S I EI + G+ F LVNP++
Sbjct: 91 DNPRILYNYKNGVNFDTFVVFDIETTGLSHLKNNITEIGAVRVENGKVVEYFNELVNPEQ 150
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
++ + GIT +MV D P + +++P L + K+ +FVAHNA FD+ F
Sbjct: 151 EITKEITEITGITNEMVA--DKPLIGEIMPKFLEFSKNA-------VFVAHNAE-FDISF 200
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ R + E + F+DT+ AR ++ NL + L L + G+ L+ + HRA
Sbjct: 201 IKTNCKRLNLEF--DPTFIDTMGFARAVL----PNLKNH-KLNTLCKELGVKLL-NHHRA 252
Query: 289 MADVNCLSLILQRL 302
D S IL L
Sbjct: 253 SFDAEACSGILLEL 266
>gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603]
gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603]
Length = 1433
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKVGIEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|210622608|ref|ZP_03293268.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
gi|210154109|gb|EEA85115.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
Length = 1426
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 21/181 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFD+ETTGFS N++I EI + E F LVNP++ + + GIT +MV
Sbjct: 413 VVFDLETTGFSNINDKITEIGAVKIRDFEIVDRFSELVNPEKDISYRVQELTGITNEMV- 471
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P + +V G + VAHNA FD F++ + E N +
Sbjct: 472 -KDKPTIEEILPKFMEFV-------GDDVLVAHNA-DFDTGFIMQKCKEQGLEYKNKKV- 521
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
DTL LAR ++ NL + L + + G+ L+ + HRA+ D + I + L
Sbjct: 522 -DTLMLARIML----PNL-KRYKLDKVAKEVGVQLL-NHHRAVDDAEATANIFIKFLGML 574
Query: 307 K 307
K
Sbjct: 575 K 575
>gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13]
Length = 1437
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + IIE+A + GGE F++ NP + ++ GIT DM
Sbjct: 421 TYVVFDVETTGLSAMYDTIIELAAVKVKGGEIIDRFESFANPHHPLSATTINLTGITDDM 480
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V + P + D++ +++ + VAHNA SFD+ FL F R N
Sbjct: 481 V--QNAPEVGDVLKQFSEWMQDD-------ILVAHNA-SFDMGFLNIGFQRIGLGKAKNP 530
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL L R L S ++ L L + + I L HRA+ D +L ++
Sbjct: 531 V-IDTLELGRLLFPSLKNH-----RLNTLCKKFDIELT-QHHRAIYDAEATGYLLVKM-- 581
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D E+G T D +N
Sbjct: 582 -----LKDAFEKGITFHDELN 597
>gi|424842457|ref|ZP_18267082.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Saprospira grandis DSM 2844]
gi|395320655|gb|EJF53576.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Saprospira grandis DSM 2844]
Length = 248
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 22/176 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLL-GGENSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+ FD+ETTG S N+RI++I L G LVNP+ +P + VHGI V
Sbjct: 10 VFFDLETTGTSIVNDRIVQIGAIKLFPDGRTEVKNRLVNPQMPIPEGASAVHGIYDKDVV 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN-NWL 245
+ P+ L ++K G +N+ +FD+P L EF+R E P +
Sbjct: 70 --NAPKFRQLAKAFYGWLKDSDLAG-------YNSDNFDIPMLAEEFARAGMEYPTPDTH 120
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
F+D + L R ++ S + Y G L+ AH A+AD+ IL++
Sbjct: 121 FVDVIKLER--------HVNSHKLGHTYQRYTGEELL-DAHDAIADIEATKTILEK 167
>gi|418461449|ref|ZP_13032522.1| hypothetical protein SZMC14600_10868 [Saccharomonospora azurea SZMC
14600]
gi|359738445|gb|EHK87332.1| hypothetical protein SZMC14600_10868 [Saccharomonospora azurea SZMC
14600]
Length = 566
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTD 183
VT ++ D+ETTG + + I EI + GGE F TLV+P + +P V GITT
Sbjct: 15 VTFVIVDLETTGGAPDGGDITEIGAVKVRGGEVLGEFATLVDPGQPIPPQIVALTGITTA 74
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV PR+E ++P L + + + VAHNA FD FL Y P
Sbjct: 75 MVRS--APRIEHVLPAFLAFAEG-------AVLVAHNA-GFDTSFLKAACRAHGYAWPTP 124
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVS-LQALREYYGIPLVGSAHRAMAD----VNCLSLI 298
+ + TL LAR +++ G ++S L AL P HRA+ D V+ L +
Sbjct: 125 -VVLCTLKLARRVLR--GEVRSHRLSTLAALFGASTTP----THRALDDARATVDVLHGL 177
Query: 299 LQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L+R+ SL +L++ + P + P +++K L +
Sbjct: 178 LERVGPLGVQSLEELLD--YLPD--VTPAQRRKRDLAKD 212
>gi|310641590|ref|YP_003946348.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2]
gi|309246540|gb|ADO56107.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2]
Length = 1438
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 87/184 (47%), Gaps = 20/184 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDL-LGGENSTFQTLVNPKRQVPN--AHVHGIT 181
K T +VFDIETTG S +IIEIA + G E + T VNP ++P + I
Sbjct: 417 KTATYVVFDIETTGLSVTQNKIIEIAAVKMHEGKEIDRYATFVNPHERIPYNIQQLTNIN 476
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
+MV D P +E P++ +V G + VAHNAR FD+ F+ +
Sbjct: 477 DEMV--KDAPDVE---PVMKEFVAF----AGDAVLVAHNAR-FDIGFIQATLRKMGLPEM 526
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL LAR L + ++ L L Y + L S HRA+ D L+ +L
Sbjct: 527 TNPV-LDTLELARLLFPTMKNH-----RLNTLTSKYKVAL-ESHHRAIDDTVALTEVLNG 579
Query: 302 LTFD 305
L D
Sbjct: 580 LLND 583
>gi|296536098|ref|ZP_06898231.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC
49957]
gi|296263574|gb|EFH10066.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC
49957]
Length = 241
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 22/180 (12%)
Query: 129 AIVFDIETTGFSR-ENERIIEIAFQDL--LGGENSTFQTLVNPKRQVPN--AHVHGITTD 183
A+V D ETTGF +R++E+A ++ L F L++P+R VP VHG T +
Sbjct: 4 ALVLDTETTGFDPLTGDRVLEVAAVEIVNLVPTGRHFHMLIDPERDVPEEATKVHGFTRE 63
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ P+ ++ P +L ++ G +AHNA FD FL E + ++ +
Sbjct: 64 MLIG--KPKFAEIAPAMLDFL-------GDDPIIAHNA-PFDFGFLDWELKKAGHKALDR 113
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIP-LVGSAHRAMADVNCLSLILQRL 302
+DTL LA++ LP+ SL AL YGI + +AH A+ DV L+ + L
Sbjct: 114 ARMVDTLALAKKRF----PGLPN--SLDALCRRYGIDNSMRTAHNALLDVQLLAQVYLEL 167
>gi|386040617|ref|YP_005959571.1| DNA polymerase III subunit alpha [Paenibacillus polymyxa M1]
gi|343096655|emb|CCC84864.1| DNA polymerase III alpha subunit [Paenibacillus polymyxa M1]
Length = 1438
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 87/184 (47%), Gaps = 20/184 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDL-LGGENSTFQTLVNPKRQVPN--AHVHGIT 181
K T +VFDIETTG S +IIEIA + G E + T VNP ++P + I
Sbjct: 417 KTATYVVFDIETTGLSVTQNKIIEIAAVKMHEGKEIDRYATFVNPHERIPYNIQQLTNIN 476
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
+MV D P +E P++ +V G + VAHNAR FD+ F+ +
Sbjct: 477 DEMV--KDAPDVE---PVMKEFVAF----AGDAVLVAHNAR-FDIGFIQATLRKMGLPEM 526
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL LAR L + ++ L L Y + L S HRA+ D L+ +L
Sbjct: 527 TNPV-LDTLELARLLFPTMKNH-----RLNTLTSKYKVAL-ESHHRAIDDTVALTEVLNG 579
Query: 302 LTFD 305
L D
Sbjct: 580 LLND 583
>gi|108801863|ref|YP_642060.1| DNA polymerase III subunit epsilon [Mycobacterium sp. MCS]
gi|119871016|ref|YP_940968.1| DNA polymerase III subunit epsilon [Mycobacterium sp. KMS]
gi|108772282|gb|ABG11004.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
gi|119697105|gb|ABL94178.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
Length = 330
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 19/172 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLL--GGENSTFQTLVNPKRQVPNAHVHGITTDMVCKP 188
V D+ET+GF RI+ +A + G + TL+NP HVHG+T +M+
Sbjct: 19 VVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPGVDPGPTHVHGLTAEML--E 76
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
PR D++ L ++ R VAHN FD FL E E+P + + M
Sbjct: 77 GAPRFGDVVADLAELLRGRT-------LVAHNV-GFDYSFLTAEAELVGAELPIDSV-MC 127
Query: 249 TLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
T+ LAR L G NL L+ L ++G+P + H A+ D L+ IL+
Sbjct: 128 TVELARRL-DLGTENL----RLETLAAHWGVPQL-KPHDALDDAQVLAQILK 173
>gi|363889343|ref|ZP_09316706.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium CM5]
gi|361966766|gb|EHL19653.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium CM5]
Length = 1402
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 25/183 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS +N+ I EI + E TF L+NPKR +P + GIT ++V
Sbjct: 389 VVFDIETTGFSNKNDAITEIGAVKIKNCEIVGTFSQLINPKRPIPEKIQKLTGITDELVA 448
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P L + + VAHN+ FD F+ S+E ++ F
Sbjct: 449 --DKPFIEEVLPNFLEFCSGS-------VLVAHNS-DFDTGFI----REKSFEQKLDYDF 494
Query: 247 --MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DTL L+R +M ++ L + + I L + HRA+ D + I +
Sbjct: 495 DAIDTLVLSRLIMTELKNH-----KLNTIAKELDISL-ENHHRAVDDATATAHIFLKFIE 548
Query: 305 DLK 307
LK
Sbjct: 549 KLK 551
>gi|288922213|ref|ZP_06416412.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f]
gi|288346447|gb|EFC80777.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f]
Length = 565
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 18/214 (8%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
+T +V D+ETTG S I EI + GG+ +LV +P + + GIT
Sbjct: 27 LTFVVVDLETTGGSPATSEITEIGAVKVRGGQVLGEMSSLVRASTPIPPVVSVLTGITDS 86
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ P +++++P L + + G +L VAHNA +FD+ FL C Y VP
Sbjct: 87 MLAT--APTLDEVVPTFLEFSR------GAVL-VAHNA-AFDLGFLRAAAQACGYPVP-A 135
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
W +DT+ +AR ++ + L +L +G P + HRA+AD +L L
Sbjct: 136 WEHLDTVLIARRVVT---RDEAPNCRLASLATLFGSPTEPN-HRALADARATVAVLHGLF 191
Query: 304 FDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L +E S ++P +++K L +
Sbjct: 192 ERLGNLGVTTLEDVREYSARVSPAQRRKRHLADD 225
>gi|288574409|ref|ZP_06392766.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570150|gb|EFC91707.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 193
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 91/195 (46%), Gaps = 29/195 (14%)
Query: 130 IVFDIETTGFSRENERIIEI-AFQDLLGGENSTFQTLVNPKRQVPNAHV--HGITTDMVC 186
+ D+ETTG S +RI+EI A + G E +FQT V+P R +P+ V HGIT +MV
Sbjct: 11 VAIDVETTGLSNRWDRIVEIGAIRFTPGSETESFQTFVSPGRPIPSEAVAIHGITDEMV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P + + L ++K + V HN SFD+ FL + +W
Sbjct: 70 -EGAPGLSEASIALASFLKDEEP------MVFHNP-SFDLGFLDANMR----AIKGSWNV 117
Query: 247 M---DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
M DT LAR+ SL AL ++G+ G HRA+ D + +LIL
Sbjct: 118 MPVFDTCGLARKAFPG-----IKGYSLVALARHFGLS-GGGHHRALEDCRYSASLFNLIL 171
Query: 300 QRLTFDLKLSLCDLI 314
+ + +SL DLI
Sbjct: 172 EAIDGFRCMSLKDLI 186
>gi|319941413|ref|ZP_08015741.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B]
gi|319805033|gb|EFW01863.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B]
Length = 246
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 28/185 (15%)
Query: 130 IVFDIETTGFSREN-ERIIEIAFQDLLG-----GENSTFQTLVNPKRQVPNAHV--HGIT 181
I D ETTG +N +RIIEI + G + Q VNP+R+VP V HGIT
Sbjct: 8 ITLDTETTGLDAQNGDRIIEIGCVAIEGRMMRSTDEHHLQIFVNPEREVPEEAVAIHGIT 67
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY-EV 240
T+ + D P+ ++ + +VK V HNA +FD FL E RC ++
Sbjct: 68 TEYL--QDKPKFAEIADKFIDFVKGST-------LVIHNA-AFDTGFLDMELGRCGRGKI 117
Query: 241 PNNWLFMDTLTLARELMKSGGSNLPSK-VSLQALREYYGIPLVG-SAHRAMADVNCLSLI 298
+ +DT+ LA++L LP + VSL +L YY I + H A+ D L+ +
Sbjct: 118 SDYCQVIDTVKLAKKL-------LPGRAVSLDSLCRYYEIDNSNRTLHGALLDAELLAEV 170
Query: 299 LQRLT 303
L+
Sbjct: 171 YLSLS 175
>gi|359767262|ref|ZP_09271053.1| DNA polymerase III epsilon subunit [Gordonia polyisoprenivorans
NBRC 16320]
gi|359315377|dbj|GAB23886.1| DNA polymerase III epsilon subunit [Gordonia polyisoprenivorans
NBRC 16320]
Length = 609
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG + I EI + GGE F TLV+P+R +P V GIT+ M
Sbjct: 33 TIVVVDLETTGGDPARDAITEIGAVKVRGGEVLGEFATLVDPQRSIPPQIVALTGITSAM 92
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P++ +++ + + + L VAHNAR FD+ FL + +R W
Sbjct: 93 VY--DAPQIGEVLSSFVEFARG-------CLLVAHNAR-FDMGFLRHNAARLDLA----W 138
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
F +L R + + V L AL + + + V HRA+ D +L RL
Sbjct: 139 PFHTSLCTVRLARRVLTRDEAPTVRLGALADLFDVS-VRPTHRALDDARATVEVLHRL 195
>gi|227536604|ref|ZP_03966653.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
ATCC 33300]
gi|227243681|gb|EEI93696.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
ATCC 33300]
Length = 469
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 26/181 (14%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN--STFQTLVNPKRQVPNAHVH---GIT 181
+ AIV DIETTG N I EIA L G ++QTL+NP +++P H+ GIT
Sbjct: 12 IYAIV-DIETTGGYAANSGITEIAIY-LHDGHQVIDSYQTLINPHKEIP-YHIQMLTGIT 68
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
+M+ D P ED+ + +++++ +FVAHN +FD F+ C Y+
Sbjct: 69 PEMLT--DAPSFEDVAADIYSFLENK-------VFVAHNV-NFDYSFIYAHLKACGYQWK 118
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ L T+ LAR + K S SL L + IP + HRA D ++ +R
Sbjct: 119 SPKLC--TVRLARNIFKGFSS-----YSLGNLCQRLDIP-ISDRHRAAGDAKATVILFER 170
Query: 302 L 302
+
Sbjct: 171 I 171
>gi|227499278|ref|ZP_03929390.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
gi|227218629|gb|EEI83863.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
Length = 1358
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 84/176 (47%), Gaps = 21/176 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFD+ETTG SR +RI EI ++ G+ + LVNP+ +P + GIT MV
Sbjct: 343 VVFDLETTGLSRYRDRITEIGACKVIDGKICEIYNELVNPEMLIPEKITEITGITNQMV- 401
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P++E+++P L + + G IL V N FDV F+ +R + N L+
Sbjct: 402 -ESCPKIEEVLPGFLEFCQ------GSIL-VGQNT-DFDVGFVRENCTRLGLDF--NPLY 450
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL +AR L K SL + IP + HRA D + I ++
Sbjct: 451 LDTLPMARALFAD-----MKKFSLDKIARKLEIPAF-NHHRASDDARATAQIFIKM 500
>gi|325676936|ref|ZP_08156608.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707]
gi|325552236|gb|EGD21926.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707]
Length = 577
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 70/133 (52%), Gaps = 14/133 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG S E++ I EI + GGE TLV+P R +P + GITT M
Sbjct: 28 TFVVVDLETTGGSSESDAITEIGAVKVRGGEVLGELGTLVDPGRAIPPYIVELTGITTAM 87
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V PR++ ++P L + GG +L VAHNA FDV FL +R P +
Sbjct: 88 VRT--APRIDTVLPAFLEFA------GGAVL-VAHNA-GFDVGFLKAAAARQGLPWP-KF 136
Query: 245 LFMDTLTLARELM 257
+ T+ LAR ++
Sbjct: 137 QVLCTVKLARRVL 149
>gi|312140182|ref|YP_004007518.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
gi|311889521|emb|CBH48838.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
Length = 577
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 70/133 (52%), Gaps = 14/133 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG S E++ I EI + GGE TLV+P R +P + GITT M
Sbjct: 28 TFVVVDLETTGGSSESDAITEIGAVKVRGGEVLGELGTLVDPGRAIPPYIVELTGITTAM 87
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V PR++ ++P L + GG +L VAHNA FDV FL +R P +
Sbjct: 88 VRT--APRIDTVLPAFLEFA------GGAVL-VAHNA-GFDVGFLKAAAARQGLPWP-KF 136
Query: 245 LFMDTLTLARELM 257
+ T+ LAR ++
Sbjct: 137 QVLCTVKLARRVL 149
>gi|308068695|ref|YP_003870300.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
gi|305857974|gb|ADM69762.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
Length = 1438
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 86/184 (46%), Gaps = 20/184 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGG-ENSTFQTLVNPKRQVPN--AHVHGIT 181
K T +VFDIETTG S +IIEIA + G E + T VNP ++P + I
Sbjct: 417 KTATYVVFDIETTGLSVTQNKIIEIAAVKMHDGKEVDRYATFVNPHERIPYNIQQLTNIN 476
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
+MV D P +E P++ +V G + VAHNAR FDV F+
Sbjct: 477 DEMV--KDAPDVE---PVMKEFVAF----AGDAVLVAHNAR-FDVGFIQATLRNMGLPEM 526
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL LAR L + ++ L L Y + L S HRA+ D L+ +L
Sbjct: 527 TNPV-LDTLELARLLFPTMKNH-----RLNTLTTKYKVAL-ESHHRAIDDTVALTEVLNG 579
Query: 302 LTFD 305
L D
Sbjct: 580 LLND 583
>gi|42782909|ref|NP_980156.1| DNA polymerase III subunit alpha, partial [Bacillus cereus ATCC
10987]
gi|42738836|gb|AAS42764.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus ATCC 10987]
Length = 970
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L ++IE+GF D +N
Sbjct: 578 -----LKEVIEKGFEYHDQLN 593
>gi|308177615|ref|YP_003917021.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
Re117]
gi|307745078|emb|CBT76050.1| putative DNA polymerase III subunit epsilon [Arthrobacter
arilaitensis Re117]
Length = 412
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 86/176 (48%), Gaps = 22/176 (12%)
Query: 131 VFDIETTG-FSRENERIIEIAFQDL--LGGENSTFQTLVNPKRQVPNAHVHGITTDMVCK 187
+ D ETTG F N+RI EIA + G +++TL+NP+R + +H I + V
Sbjct: 8 IVDTETTGLFPGGNDRIAEIAIVTMNRQGTIVDSWETLINPQRDLGKQSIHRIQSRDVL- 66
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF- 246
D P +DL LH+ S G +L VAHN SFD FL EF +C VP +L
Sbjct: 67 -DAPSFKDLAE-ELHWRLS-----GTVL-VAHNL-SFDSRFLEAEFRKCGLPVPETFLAQ 117
Query: 247 -MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
M T+ ++ ++ G SLQ + +GI L AH A+ D + +L R
Sbjct: 118 GMCTMRMSHRYLQGAGR------SLQDCCDSFGIDLQ-QAHSAVGDATATATLLSR 166
>gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
Length = 392
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 21/176 (11%)
Query: 130 IVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVF D+ETTG S + RI E+ ++ S++ TLV+P + +P + GIT DMV
Sbjct: 15 IVFVDLETTGGSVGDHRITEVGVVEVGPNGVSSWTTLVDPGQPIPPFIQQLTGITNDMVR 74
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P E + L + + LF+AHNA SFD FL +EF R + N
Sbjct: 75 G--APTFEAIAADLFARLDGK-------LFIAHNA-SFDRGFLRSEFQRAGFAF--NPDV 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ L+R L + + L AL E + + + HRA+AD + L QRL
Sbjct: 123 LCTVRLSRALFPA-----EKRHGLDALVERHAL-MPSDRHRALADADLLWQFWQRL 172
>gi|337265423|ref|YP_004609478.1| DNA polymerase III subunit epsilon [Mesorhizobium opportunistum
WSM2075]
gi|336025733|gb|AEH85384.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
WSM2075]
Length = 241
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 76/156 (48%), Gaps = 23/156 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLG--GENSTFQTLVNPKRQVPNAH---VHGITT-D 183
I+FD ETTG ++R+IE+ +L+ TF +NP+ + +A VHGI+ D
Sbjct: 4 IIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHAEAQAVHGISAAD 63
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
+ KP +++ L + + VAHNA +FD+ FL EF R + V +
Sbjct: 64 LAGKPT---FAEIVEEWLAFTDGAK-------LVAHNA-TFDIGFLNVEFGRLGHPVIDP 112
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGI 279
L +DTL LAR G + SL AL YGI
Sbjct: 113 GLVVDTLALARRKHPMGPN------SLDALCRRYGI 142
>gi|310658999|ref|YP_003936720.1| DNA polymerase III PolC [[Clostridium] sticklandii]
gi|308825777|emb|CBH21815.1| DNA polymerase III PolC [[Clostridium] sticklandii]
Length = 1417
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 38/219 (17%)
Query: 122 DLAKLVTA----------IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D++K+VT +VFDIETTGFS ++ I EI + E +F L+NP
Sbjct: 389 DMSKIVTIDTEGDFEDEYVVFDIETTGFSNTSDEITEIGAVKIRNKEIIDSFGELINPHM 448
Query: 171 QVP--NAHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + GIT D++ D P +++++P L +V S + VAHN+ FD+ F
Sbjct: 449 PIPLKVQELTGITNDLI--KDKPSIDEVLPRFLEFVGSS-------ILVAHNS-DFDMGF 498
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ + R + N + DTL L+R L+ NL + L + + GI L + HRA
Sbjct: 499 IRAKAKRLNLAFENKDI--DTLKLSRILL----PNL-KRHKLNLITNHLGISL-ENHHRA 550
Query: 289 MADVNCLSLILQRLTFDLKLSLCDLIERGFTPSDLINPK 327
+ D +L+ + + LI++ +++N K
Sbjct: 551 VDDAKATALVFIKF-------MEMLIDKDINTFEMVNDK 582
>gi|429728368|ref|ZP_19263094.1| DNA polymerase III, alpha subunit [Peptostreptococcus anaerobius
VPI 4330]
gi|429149867|gb|EKX92829.1| DNA polymerase III, alpha subunit [Peptostreptococcus anaerobius
VPI 4330]
Length = 1440
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 24/192 (12%)
Query: 112 DIEQII-AENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPK 169
D + I+ A ++DL + T +VFDIETTG S ++ + EI + E +F T VNPK
Sbjct: 410 DTDTIVNANDRDLDQ--TFVVFDIETTGLSPHSDNLTEIGAVKVQNCEIVDSFSTFVNPK 467
Query: 170 RQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVP 227
+ + IT +MV D P +E+ +P L + K + VAHNA FD
Sbjct: 468 MDISYQIQELTRITNEMV--KDAPSLEEALPEFLEFAKDS-------VLVAHNA-DFDTG 517
Query: 228 FLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHR 287
F+ + + E N+ +DTLTLAR + +NL + SL + + G+ L G HR
Sbjct: 518 FIYQKCQQLGLEY--NFEKVDTLTLARII----NTNL-KRFSLDKVCKEMGVVLSGH-HR 569
Query: 288 AMADVNCLSLIL 299
A+ D + +
Sbjct: 570 AVNDAQATAEVF 581
>gi|410624035|ref|ZP_11334843.1| DNA polymerase III subunit epsilon [Glaciecola pallidula DSM 14239
= ACAM 615]
gi|410156375|dbj|GAC30217.1| DNA polymerase III subunit epsilon [Glaciecola pallidula DSM 14239
= ACAM 615]
Length = 725
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 26/210 (12%)
Query: 89 EATSTTINVNKTEISKIQRIQHYDIE-QIIAENKDLAKLVTAIVFDIETTGFSRENERII 147
E S + + ++ IQ+++ + + +I N + + V DIETTG ++ RI
Sbjct: 516 EVKSEGDQLRRNQLLSIQKLRSFGFDVRITNVNWTVDPMQPYAVIDIETTGGKAQHHRIT 575
Query: 148 EIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYV 204
E+ ++GGE + +Q+L+NP+R++P+ + GI DMV + P+
Sbjct: 576 EVGIVKMIGGEVVAQWQSLINPQRRIPHNITSLTGIDNDMVAEA---------PLFAEVA 626
Query: 205 KSRQKPGGYILFVAHNARSFDVPFLINEFSRCS--YEVPNNWLFMDTLTLARELMKSGGS 262
+ +FVAHN +FD F+ EF+R + P L RE M+
Sbjct: 627 DDIDEFTQGCVFVAHNV-NFDYGFIKEEFNRLERHFRRPK-------LCTVRE-MRKHYK 677
Query: 263 NLPSKVSLQALREYYGIPLVGSAHRAMADV 292
LPS SL L +++ I + HRAM+D
Sbjct: 678 GLPS-YSLANLTKHFSIDM-QRHHRAMSDA 705
>gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
Length = 1151
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 92/191 (48%), Gaps = 24/191 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGF N++IIEI + G E F VNP+ +P + IT +MV
Sbjct: 118 VVFDIETTGFDPFNDKIIEIGAVKMRGREIIGEFSEFVNPEIPIPPKITELTTITDEMVA 177
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ ++E ++P L + VAHNA+ FDV F+ + E +
Sbjct: 178 NAE--KIETVLPRFLEFCTD-------TTVVAHNAK-FDVGFIKQKTIEQGLEYSPS--V 225
Query: 247 MDTLTLARELM-KSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR-LTF 304
+DTL LAR L+ S G L + L +Y+GI L + HRA+ D + + Q+ L
Sbjct: 226 IDTLPLARTLLPDSRGYGLAN------LVKYFGITL-ETHHRAVDDAKATAEVFQKFLNM 278
Query: 305 DLKLSLCDLIE 315
L + LIE
Sbjct: 279 ILSKGILKLIE 289
>gi|402838038|ref|ZP_10886553.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium OBRC8]
gi|402274469|gb|EJU23653.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium OBRC8]
Length = 1402
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 25/183 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS +N+ I EI + E TF L+NPKR +P + GIT ++V
Sbjct: 389 VVFDIETTGFSNKNDAITEIGAVKIKNCEIVGTFSQLINPKRPIPEKIQKLTGITDELVA 448
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P L + + VAHN+ FD F+ S+E ++ F
Sbjct: 449 --DKPFIEEVLPNFLEFCSGS-------VLVAHNS-DFDTGFI----REKSFEQKLDYDF 494
Query: 247 --MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DTL L+R +M ++ L + + I L + HRA+ D + I +
Sbjct: 495 DAIDTLVLSRLIMTELKNH-----KLNTIAKELDISL-ENHHRAVDDATATAHIFLKFIE 548
Query: 305 DLK 307
LK
Sbjct: 549 KLK 551
>gi|343472189|emb|CCD15590.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 732
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 82/186 (44%), Gaps = 19/186 (10%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVP--NAHVHGITTDMV-C 186
+VFDIE+TG + + IIEIA D + E ++F +LVNP+R +P + +H IT MV
Sbjct: 340 VVFDIESTGLNTATDAIIEIAAFDPV--EGTSFSSLVNPQRPIPQQSMDIHHITDSMVQG 397
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P + + L +++ + V HN S D P L F R + LF
Sbjct: 398 APHISEVTQAFARYLRLTHAQRDEDEVTVLVGHNVFSLDEPLLRRAF-RSENIDAESLLF 456
Query: 247 MDTLTLARELMKS-GGSNLPSKVSLQALR------------EYYGIPLVGSAHRAMADVN 293
D+LTL + L + G+ SKV L E + G HRA D
Sbjct: 457 CDSLTLLKGLKQELRGAKDVSKVDRGVLEILTSSLRLSSLVEGLRVEAEGDLHRADTDAK 516
Query: 294 CLSLIL 299
L +L
Sbjct: 517 LLWFVL 522
>gi|291561902|emb|CBL40706.1| exonuclease, DNA polymerase III, epsilon subunit family
[butyrate-producing bacterium SS3/4]
Length = 247
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 21/176 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENS-TFQTLVNPKRQVPNAHVH--GITTDMVC 186
+ D+ETTG +E+I EI ++ GE + T+ T+VNP R++P V GIT DMV
Sbjct: 10 VALDLETTGIGARHEKITEIGMVKVIDGETTDTYHTMVNPHREIPKRIVELTGITDDMV- 68
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++ +L + + G I+ FD FL+ + + +
Sbjct: 69 -KDAPGIEEILDEVLAFTEDLPLLGHQII--------FDYGFLVQ--AAVNQKRKFEKYG 117
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL L R LM K +L A Y+ + +AHRA++D + Q L
Sbjct: 118 VDTLKLCRYLMPG-----EEKKNLSAACAYFEVTQ-DTAHRALSDAYAAHNLYQEL 167
>gi|378718306|ref|YP_005283195.1| DNA polymerase III subunit epsilon [Gordonia polyisoprenivorans
VH2]
gi|375753009|gb|AFA73829.1| DNA polymerase III epsilon subunit [Gordonia polyisoprenivorans
VH2]
Length = 622
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +V D+ETTG + I EI + GGE F TLV+P+R +P V GIT+ M
Sbjct: 44 TIVVVDLETTGGDPARDAITEIGAVKVRGGEVLGEFATLVDPQRSIPPQIVALTGITSAM 103
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P++ +++ + + + L VAHNAR FD+ FL + +R W
Sbjct: 104 VY--DAPQIGEVLSSFVEFARG-------CLLVAHNAR-FDMGFLRHNAARLDLA----W 149
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
F +L R + + V L AL + + + V HRA+ D +L RL
Sbjct: 150 PFHTSLCTVRLARRVLTRDEAPTVRLGALADLFDVS-VRPTHRALDDARATVEVLHRL 206
>gi|300773503|ref|ZP_07083372.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
ATCC 33861]
gi|300759674|gb|EFK56501.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
ATCC 33861]
Length = 469
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 26/181 (14%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN--STFQTLVNPKRQVPNAHVH---GIT 181
+ AIV DIETTG N I EIA L G ++QTL+NP +++P H+ GIT
Sbjct: 12 IYAIV-DIETTGGYAANSGITEIAIY-LHDGHQIIDSYQTLINPHKEIP-YHIQMLTGIT 68
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
+M+ D P ED+ + +++++ +FVAHN +FD F+ C Y+
Sbjct: 69 PEMLT--DAPSFEDVAADIYSFLENK-------VFVAHNV-NFDYSFVYAHLKACGYQWK 118
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ L T+ LAR + K S SL L + IP + HRA D ++ +R
Sbjct: 119 SPKLC--TVRLARNIFKGFSS-----YSLGNLCQRLDIP-ISDRHRAAGDAKATVILFER 170
Query: 302 L 302
+
Sbjct: 171 I 171
>gi|403507612|ref|YP_006639250.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Nocardiopsis alba ATCC BAA-2165]
gi|402800627|gb|AFR08037.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Nocardiopsis alba ATCC BAA-2165]
Length = 570
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 86/186 (46%), Gaps = 21/186 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG S RI E+ + GE + TLV+P +P + GIT
Sbjct: 20 VTFVVVDLETTGTSASRSRITEVGAVRVRDGEILDEYTTLVDPDTLIPAEVTLLTGITQS 79
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV PR+E ++P LL ++ + P + VAHNA FD FL R + E P
Sbjct: 80 MVAT--APRIEKVLPELLAFLT--EDPDS--VLVAHNA-PFDTGFLKAACEREALEWPAP 132
Query: 244 WLFMDTLTLARELMKSGGSNLPSKV---SLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
+DTL LAR L+ KV L L YYG V HRA+ D +L
Sbjct: 133 -PVVDTLRLARALLPV------PKVRNHRLGTLAAYYGAS-VTPDHRALDDARATVDVLG 184
Query: 301 RLTFDL 306
L +L
Sbjct: 185 GLISEL 190
>gi|423488700|ref|ZP_17465382.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BtB2-4]
gi|423494425|ref|ZP_17471069.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
CER057]
gi|423498785|ref|ZP_17475402.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
CER074]
gi|423661559|ref|ZP_17636728.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM022]
gi|401152039|gb|EJQ59480.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
CER057]
gi|401158867|gb|EJQ66256.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
CER074]
gi|401299932|gb|EJS05527.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM022]
gi|402433707|gb|EJV65757.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BtB2-4]
Length = 315
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+ +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPELSIPDRITSLTGITNYRV- 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 70 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNNV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 167
>gi|320535302|ref|ZP_08035422.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Treponema phagedenis F0421]
gi|320147834|gb|EFW39330.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Treponema phagedenis F0421]
Length = 216
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 18/163 (11%)
Query: 132 FDIETTGFSRENERIIEIAFQDLLG-GENSTFQTLVNPKRQVPN--AHVHGITTDMVCKP 188
FD ETTG +E + ++EI G + F L+NP + +P V+ IT M+
Sbjct: 18 FDTETTGLKQEEDSVVEIGGIKFDHRGVIARFNILINPGKPMPEDVTAVNNITDAMLA-- 75
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
D P +IP L ++K + VAHNA FD+ F+ NE RC N + +D
Sbjct: 76 DKPPFNAVIPDFLRFIKK-------TVLVAHNA-PFDIGFINNELKRCKKPPLTNKV-ID 126
Query: 249 TLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
TL LA+E+ G + + LQ L +GI + AHRA D
Sbjct: 127 TLVLAQEVFPGLGKH---QYRLQNLALQFGITAL-EAHRAEDD 165
>gi|237732820|ref|ZP_04563301.1| DNA polymerase III subunit epsilon [Mollicutes bacterium D7]
gi|229384061|gb|EEO34152.1| DNA polymerase III subunit epsilon [Coprobacillus sp. D7]
Length = 224
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVHGITTDMVCKP 188
+VFD+ETTGF+++ +RIIEI + G F TL P + ++ T++
Sbjct: 42 VVFDLETTGFNKKEDRIIEIGAIKVKNGRVVDRFSTLCAPIKGGKPMYISAKITEVTGIK 101
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILF-------VAHNARSFDVPFLINEFSRCSYEVP 241
+V LL+ + + ++ + VAHN FD+PFL R + E
Sbjct: 102 NVD--------LLNQIPESEAVKNFMCWLGESKISVAHNGLKFDIPFLKEACKRSNVEFK 153
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+ +DT+ L++ L N+P+ + L Y+G+ AHRA+ D L I +
Sbjct: 154 FTHI-LDTMLLSKALNYVNNGNIPNN-KQETLARYFGVDY--QAHRAVNDCEALLKIFDK 209
Query: 302 LTFDLK 307
L D K
Sbjct: 210 LKNDAK 215
>gi|363893413|ref|ZP_09320511.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium ACC19a]
gi|361963717|gb|EHL16783.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium ACC19a]
Length = 1402
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 25/183 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS +N+ I EI + E TF L+NPKR +P + GIT ++V
Sbjct: 389 VVFDIETTGFSNKNDAITEIGAVKIKNCEIVDTFSQLINPKRPIPEKIQKLTGITDELVV 448
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P L + + VAHN+ FD F+ S+E ++ F
Sbjct: 449 --DKPFIEEVLPNFLEFCSGS-------VLVAHNS-DFDTGFI----REKSFEQKLDYDF 494
Query: 247 --MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DTL L+R +M ++ L + + I L + HRA+ D + I +
Sbjct: 495 DAIDTLVLSRLIMTELKNH-----KLNTIAKELDISL-ENHHRAVDDATATAHIFLKFIE 548
Query: 305 DLK 307
LK
Sbjct: 549 KLK 551
>gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b]
gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b]
Length = 1459
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 90/192 (46%), Gaps = 26/192 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGF N++IIEI + G E F VNP+ +P + IT +MV
Sbjct: 426 VVFDIETTGFDPFNDKIIEIGAVKMRGREVIGEFSEFVNPEIPIPQKITELTTITDEMVA 485
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ ++E ++P L + VAHNA+ FDV F+ + E +
Sbjct: 486 NAE--KIETVLPRFLEFCTG-------TTVVAHNAK-FDVGFIKQKTIDQGLEYSPS--V 533
Query: 247 MDTLTLARELMKSGGSNLPS--KVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR-LT 303
+DTL LAR L LP L L +Y+GI L + HRA+ D + + Q+ L
Sbjct: 534 IDTLPLARTL-------LPELRGYGLANLVKYFGITL-ETHHRAVDDAKATAEVFQKFLN 585
Query: 304 FDLKLSLCDLIE 315
L + LIE
Sbjct: 586 MILSKGILKLIE 597
>gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
Length = 382
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 21/176 (11%)
Query: 130 IVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVF D+ETTG S RI E+ ++ + + +L++P++ +P+ + GIT DMV
Sbjct: 15 IVFVDLETTGGSTSEHRITEVGVVEVGPTGVTRWSSLIDPQQPIPSFIQQLTGITNDMVH 74
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P E + P L + + LFVAHNA SFD FL +EF R +
Sbjct: 75 --GAPTFESIAPALYERLNGK-------LFVAHNA-SFDRGFLRSEFRRAGLAFDPD--V 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ L+R L + L AL E + + + HRA+AD + + QRL
Sbjct: 123 LCTVRLSRALFPG-----EKRHGLDALVERHAL-VPSDRHRALADADLIWQFWQRL 172
>gi|423612035|ref|ZP_17587896.1| DNA polymerase III polC-type [Bacillus cereus VD107]
gi|401247042|gb|EJR53386.1| DNA polymerase III polC-type [Bacillus cereus VD107]
Length = 1433
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 97/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + ++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVAEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 578 -----LKDVIEKGFEYHDQLN 593
>gi|381199324|ref|ZP_09906474.1| DNA polymerase III, epsilon subunit [Sphingobium yanoikuyae
XLDN2-5]
gi|427409414|ref|ZP_18899616.1| DNA polymerase III, epsilon subunit [Sphingobium yanoikuyae ATCC
51230]
gi|425711547|gb|EKU74562.1| DNA polymerase III, epsilon subunit [Sphingobium yanoikuyae ATCC
51230]
Length = 233
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 22/187 (11%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLG--GENSTFQTLVNPKRQVPNAH--VHGITTDM 184
I+FD ETTGF +R++EI +L+ TF NP+R +P+A VHG+++
Sbjct: 4 IIFDTETTGFDPASGDRLVEIGCIELINRVPTGRTFHAYYNPQRDMPSAAEAVHGLSSQF 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + + L+ +++ VAHNAR FD FL +E C+ + +
Sbjct: 64 LS--DKPLFREGVAELMDFLEDSP-------LVAHNAR-FDFGFLNHELKLCARDAVSMD 113
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLILQRLT 303
+DT+ +AR L +K SL AL YGI H A+ D L+ + LT
Sbjct: 114 RMIDTVAIARTLHPG------AKHSLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELT 167
Query: 304 FDLKLSL 310
++ L
Sbjct: 168 GGRQIGL 174
>gi|342185590|emb|CCC95074.1| DNA polymerase I-like protein B [Trypanosoma congolense IL3000]
Length = 1405
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 19/186 (10%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVP--NAHVHGITTDMV-C 186
+VFDIE+TG + + IIEIA D + E ++F +LVNP+R +P + +H IT MV
Sbjct: 765 VVFDIESTGLNTATDAIIEIAAFDPV--EGTSFSSLVNPQRPIPQQSMDIHHITDSMVQG 822
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P + + L +++ + V HN S D P L F + + + LF
Sbjct: 823 APHISEVTQAFARYLRLTHAQRDEDEVTVLVGHNVFSLDEPLLRRAFRSENIDA-ESLLF 881
Query: 247 MDTLTLARELMKS-GGSNLPSKVSLQALR------------EYYGIPLVGSAHRAMADVN 293
D+LTL + L + G+ SKV L E + G HRA D
Sbjct: 882 CDSLTLLKGLKQELRGAKDVSKVDRGVLEILTSSLRLSSLVEGLRVEAEGDLHRADTDAK 941
Query: 294 CLSLIL 299
L +L
Sbjct: 942 LLWFVL 947
>gi|256370469|ref|YP_003107980.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
gi|256000632|gb|ACU49031.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
Length = 234
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 95/202 (47%), Gaps = 28/202 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLG--GENSTFQTLVNPK-RQV-PNA-HVHGITTDM 184
IVFD ETTG R +R+IEI +L+ TF +NP+ RQV P+A VHGI+ +
Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQ 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P +++ L ++ + VAHNA FD+ F+ E +R +
Sbjct: 64 LL--DKPVFAEILDEFLEFIDGAR-------LVAHNA-MFDLGFINAELARLDQAEITSE 113
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHR----AMADVNCLSLILQ 300
+DTL LAR G + SL AL + YGI ++HR A+ D L+ +
Sbjct: 114 HIVDTLALARRKHPMGPN------SLDALCKRYGIE---NSHRTLHGALLDAQILAEVYI 164
Query: 301 RLTFDLKLSLCDLIERGFTPSD 322
L + +L +E G D
Sbjct: 165 ELIGGKQTALGLTMESGSAGGD 186
>gi|229012784|ref|ZP_04169953.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
gi|228748465|gb|EEL98321.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
Length = 318
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+ +P+ + GIT V
Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPELSIPDRITSLTGITNYRV- 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 73 -SDAPTIEEVLPLFLAFLHTN-------VIVAHNA-SFDMRFLKSNVNMLGLPEPKNNV- 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + + Q+
Sbjct: 123 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAVYQK 170
>gi|425748583|ref|ZP_18866569.1| exonuclease [Acinetobacter baumannii WC-348]
gi|425491043|gb|EKU57332.1| exonuclease [Acinetobacter baumannii WC-348]
Length = 208
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 86/168 (51%), Gaps = 24/168 (14%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMV 185
+V D ETTG S + +RI E+A ++ G+ F +LVN +P + GIT MV
Sbjct: 7 VVLDFETTGISPHKGDRITEVAALRVVNGQITERFVSLVNCGVNIPYFITGLTGITQAMV 66
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
P++E +IP LL ++ G VAHNAR FD FL+ E +R + P +
Sbjct: 67 NH--APQVEKVIPHLLEFI-------GTDPLVAHNAR-FDEKFLLAESARLELQ-PAHRG 115
Query: 246 FMDTLTLARELMKSGGSNLPSKVS--LQALREYYGIPLVGSAHRAMAD 291
+ +L LAR + LP + S L A+ + GI G+AHRA AD
Sbjct: 116 LICSLKLARRI-------LPHQPSYRLGAIADSIGIQFRGTAHRAEAD 156
>gi|403069151|ref|ZP_10910483.1| DNA-directed DNA polymerase III subunit alpha [Oceanobacillus sp.
Ndiop]
Length = 1429
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH 178
N+DL T IVFD+ETTG S + IIE+A + GE F+ NP + +
Sbjct: 407 NRDLEN-DTYIVFDVETTGLSAVYDTIIELAAVKIQKGEIIDRFEAFANPHHPLSQTTIE 465
Query: 179 --GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC 236
GIT DMV D P +E+++ ++ G + VAHNA SFD+ FL R
Sbjct: 466 LTGITDDMV--RDAPEIEEVLKDFHQWM-------GDDILVAHNA-SFDMGFLNQGLKRF 515
Query: 237 SYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
Y+ N + +DTL LAR L ++ L L ++ I L HRA+ D
Sbjct: 516 DYDKAKNPV-VDTLELARFLFPELRNH-----RLNTLCKHLDIELT-QHHRAIYDAEATG 568
Query: 297 LILQRLT 303
+L +L
Sbjct: 569 YLLWKLV 575
>gi|326405243|ref|YP_004285325.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
gi|325052105|dbj|BAJ82443.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
Length = 235
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 28/184 (15%)
Query: 129 AIVFDIETTGFSR-ENERIIEIA----FQDLLGGENSTFQTLVNPKRQVPN--AHVHGIT 181
A++FD ETTG +R+IE+A + DL G+ F TL++P+R +P + VHG+T
Sbjct: 4 AVLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGK--VFHTLIDPERDIPAEASRVHGMT 61
Query: 182 T-DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEV 240
+ D+ KP + ++ LL + + P VAHNA FD FL EF+R
Sbjct: 62 SADVAGKP---KFAEIAAELLEFFA--EDP-----LVAHNA-PFDFGFLDAEFARIGRAA 110
Query: 241 PNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLIL 299
+ +DTL LA++ +P+ SL AL + I L + H A+ D L+ +
Sbjct: 111 LDRARMIDTLALAKQRF----PGMPN--SLDALCRRFDIDLSARTTHNALLDCKLLAEVY 164
Query: 300 QRLT 303
LT
Sbjct: 165 VELT 168
>gi|225626451|ref|ZP_03784490.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
gi|225618108|gb|EEH15151.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
Length = 248
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 95/202 (47%), Gaps = 28/202 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLG--GENSTFQTLVNPK-RQV-PNA-HVHGITTDM 184
IVFD ETTG R +R+IEI +L+ TF +NP+ RQV P+A VHGI+ +
Sbjct: 18 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQ 77
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P +++ L ++ + VAHNA FD+ F+ E +R +
Sbjct: 78 LL--DKPVFAEILDEFLEFIDGAR-------LVAHNA-MFDLGFINAELARLDQAEITSE 127
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHR----AMADVNCLSLILQ 300
+DTL LAR G + SL AL + YGI ++HR A+ D L+ +
Sbjct: 128 HIVDTLALARRKHPMGPN------SLDALCKRYGID---NSHRTLHGALLDAQILAEVYI 178
Query: 301 RLTFDLKLSLCDLIERGFTPSD 322
L + +L +E G D
Sbjct: 179 ELIGGKQTALGLTMESGSAGGD 200
>gi|345017707|ref|YP_004820060.1| DNA polymerase III polC-type [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033050|gb|AEM78776.1| DNA polymerase III polC-type [Thermoanaerobacter wiegelii Rt8.B1]
Length = 1407
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 80/170 (47%), Gaps = 17/170 (10%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVHGITTDMVCKPD 189
VFDIETTG S N+ IIEI + G+ TF+T VNPK + + D D
Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESIVKD 455
Query: 190 VPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDT 249
P +E+++P L + + + VAHNA +FDV F+ ++ + + V N L DT
Sbjct: 456 APSIEEILPNFLEFSSNS-------VLVAHNA-NFDVSFIKSKAKKFNLNVNNAVL--DT 505
Query: 250 LTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
L L+R L K L L E+ + L HRA+ D + I
Sbjct: 506 LELSRHLYKD-----LKNYKLDTLSEHLQVKL-EHHHRAVDDARATAEIF 549
>gi|423511605|ref|ZP_17488136.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA2-1]
gi|402451219|gb|EJV83044.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA2-1]
Length = 315
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 22/172 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHEMIDQFVSYVNPERPIPSRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P + +++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIAEVLPLFLAFLDTN-------IIVAHNA-SFDMRFLKSNVNMLGLPEPKNNV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD-VNCLSL 297
+DT+ LA++ MK ++ L+ L+ GI L S+H A D + C ++
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--SSHNAFDDCITCAAV 164
>gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
Length = 574
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 101/218 (46%), Gaps = 27/218 (12%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
+T +VFD+ETTG S I EI + GGE F TLV+P +P + + GIT
Sbjct: 19 ITFVVFDLETTGVSAGEHAITEIGAVKVRGGEVLGEFGTLVDPGSPIPPFISVLTGITDT 78
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P++E ++P L + + VAHNA FD+ F+ + Y P +
Sbjct: 79 MVVA--APKIESVLPSFLEFAEG-------TTLVAHNA-GFDLGFIKAACAAHGYPPPAH 128
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+ +DT+ LAR+L+ + L L + HRA+AD V+ L +L
Sbjct: 129 PV-VDTVVLARKLLT---RDEAPNCKLSTLARIFS--KTEPRHRALADAQATVDVLHALL 182
Query: 300 QRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
+R +L +L RGF + P++++K L
Sbjct: 183 ERAGSFGVHTLEEL--RGFVRAP--TPEQRRKRHLADG 216
>gi|237816422|ref|ZP_04595415.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A]
gi|237788489|gb|EEP62704.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A]
Length = 248
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 95/202 (47%), Gaps = 28/202 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLG--GENSTFQTLVNPK-RQV-PNA-HVHGITTDM 184
IVFD ETTG R +R+IEI +L+ TF +NP+ RQV P+A VHGI+ +
Sbjct: 18 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQ 77
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P +++ L ++ + VAHNA FD+ F+ E +R +
Sbjct: 78 LL--DKPVFAEILDEFLEFIDGAR-------LVAHNA-MFDLGFINAELARLDQAEITSE 127
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHR----AMADVNCLSLILQ 300
+DTL LAR G + SL AL + YGI ++HR A+ D L+ +
Sbjct: 128 HIVDTLALARRKHPMGPN------SLDALCKRYGID---NSHRTLHGALLDAQILAEVYI 178
Query: 301 RLTFDLKLSLCDLIERGFTPSD 322
L + +L +E G D
Sbjct: 179 ELIGGKQTALGLTMESGSAGGD 200
>gi|402556061|ref|YP_006597332.1| DNA polymerase III PolC [Bacillus cereus FRI-35]
gi|401797271|gb|AFQ11130.1| DNA polymerase III PolC [Bacillus cereus FRI-35]
Length = 1433
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E N
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTKNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTLCKKMDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L ++IE+GF D +N
Sbjct: 578 -----LKEVIEKGFEYHDQLN 593
>gi|365826043|ref|ZP_09367991.1| hypothetical protein HMPREF0045_01627 [Actinomyces graevenitzii
C83]
gi|365257524|gb|EHM87568.1| hypothetical protein HMPREF0045_01627 [Actinomyces graevenitzii
C83]
Length = 335
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 35/190 (18%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTD 183
+T + D+ETTGFS + IIEIA + G+ F+TLVN + + + + GIT
Sbjct: 44 MTFVAVDLETTGFSNDQNDIIEIAALKIKDGQIVDKFETLVNVGYGLKSEISELTGITDS 103
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY----E 239
M+ + P + +IP ++ K L +AHNA SFDV FL C+Y +
Sbjct: 104 ML--ENAPSIYAVIPKFENFAKDS-------LLLAHNA-SFDVDFLY-----CAYKKVLD 148
Query: 240 VPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCL 295
P ++DT+++AR + GS +L A+ +Y G+ SAHRA +D V C
Sbjct: 149 KPLTNDYVDTISVARRVFT--GSR-----TLSAMCKYLGVT-NKSAHRAASDIAATVECY 200
Query: 296 SLILQRLTFD 305
+++R+ D
Sbjct: 201 -FLMRRIVID 209
>gi|167041229|gb|ABZ05986.1| putative exonuclease [uncultured marine microorganism
HF4000_001N02]
Length = 299
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 25/174 (14%)
Query: 132 FDIETTGFSRENERIIEIAFQDLLG----GENSTFQTLVNPKRQVPNA--HVHGITTDMV 185
FD+ETTG +RI++ A L+G G + +LV+P+R +P A +HGI+ + V
Sbjct: 42 FDLETTGLDARKDRIVQYA---LIGSDVDGSHINLASLVDPRRGIPTAASRIHGISEEDV 98
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
V E + + ++ + V HN +FD FL E R E P
Sbjct: 99 RG--VGSFETHVGAISELIED-------AVIVGHNISNFDWRFLELECMRAGVETPIPRA 149
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
+DT +LAR+L +P + +L L Y I +G AH A AD L+L
Sbjct: 150 IVDTYSLARKL------RIPGRRTLGVLCARYDIS-IGRAHSADADAGASLLLL 196
>gi|23502919|ref|NP_699046.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
gi|62290915|ref|YP_222708.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
9-941]
gi|82700826|ref|YP_415400.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
Abortus 2308]
gi|148559666|ref|YP_001259876.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
gi|161619985|ref|YP_001593872.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
gi|163844089|ref|YP_001628493.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
gi|189025128|ref|YP_001935896.1| DNA polymerase III subunit epsilon [Brucella abortus S19]
gi|260546177|ref|ZP_05821917.1| DNA polymerase III [Brucella abortus NCTC 8038]
gi|260567458|ref|ZP_05837928.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
gi|260755744|ref|ZP_05868092.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
870]
gi|260758968|ref|ZP_05871316.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
292]
gi|260760692|ref|ZP_05873035.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
86/8/59]
gi|260884770|ref|ZP_05896384.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
C68]
gi|261215021|ref|ZP_05929302.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
Tulya]
gi|261217890|ref|ZP_05932171.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
gi|261221121|ref|ZP_05935402.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
gi|261316547|ref|ZP_05955744.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
gi|261321260|ref|ZP_05960457.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
gi|261324012|ref|ZP_05963209.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
gi|261751212|ref|ZP_05994921.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
gi|261755776|ref|ZP_05999485.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
gi|261759005|ref|ZP_06002714.1| DNA polymerase III [Brucella sp. F5/99]
gi|265987621|ref|ZP_06100178.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
M292/94/1]
gi|265997081|ref|ZP_06109638.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
gi|294851300|ref|ZP_06791973.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
gi|297247299|ref|ZP_06931017.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
B3196]
gi|340791653|ref|YP_004757118.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
gi|376272212|ref|YP_005150790.1| DNA polymerase III subunit epsilon [Brucella abortus A13334]
gi|376275342|ref|YP_005115781.1| DNA polymerase III subunit epsilon [Brucella canis HSK A52141]
gi|376281714|ref|YP_005155720.1| DNA polymerase III subunit epsilon [Brucella suis VBI22]
gi|384225706|ref|YP_005616870.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
gi|423167965|ref|ZP_17154668.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str.
NI435a]
gi|423169659|ref|ZP_17156334.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str.
NI474]
gi|423175351|ref|ZP_17162020.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str.
NI486]
gi|423177799|ref|ZP_17164444.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str.
NI488]
gi|423179092|ref|ZP_17165733.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str.
NI010]
gi|423182223|ref|ZP_17168860.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str.
NI016]
gi|423186835|ref|ZP_17173449.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str.
NI021]
gi|423190729|ref|ZP_17177337.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str.
NI259]
gi|23348951|gb|AAN30961.1| DNA polymerase III, epsilon subunit [Brucella suis 1330]
gi|62197047|gb|AAX75347.1| DnaQ, DNA polymerase III, epsilon subunit [Brucella abortus bv. 1
str. 9-941]
gi|82616927|emb|CAJ12028.1| Beta tubulin:DNA polymerase III, epsilon subunit:Exonuclease:DNA
polymerase 3, epsilon subunit [Brucella melitensis
biovar Abortus 2308]
gi|148370923|gb|ABQ60902.1| DNA polymerase III, epsilon subunit [Brucella ovis ATCC 25840]
gi|161336796|gb|ABX63101.1| DNA polymerase III, epsilon subunit [Brucella canis ATCC 23365]
gi|163674812|gb|ABY38923.1| DNA polymerase III, epsilon subunit [Brucella suis ATCC 23445]
gi|189020700|gb|ACD73422.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
gi|260096284|gb|EEW80160.1| DNA polymerase III [Brucella abortus NCTC 8038]
gi|260156976|gb|EEW92056.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
gi|260669286|gb|EEX56226.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
292]
gi|260671124|gb|EEX57945.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
86/8/59]
gi|260675852|gb|EEX62673.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
870]
gi|260874298|gb|EEX81367.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
C68]
gi|260916628|gb|EEX83489.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
Tulya]
gi|260919705|gb|EEX86358.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
gi|260922979|gb|EEX89547.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
gi|261293950|gb|EEX97446.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
gi|261295770|gb|EEX99266.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
gi|261299992|gb|EEY03489.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
gi|261738989|gb|EEY26985.1| DNA polymerase III [Brucella sp. F5/99]
gi|261740965|gb|EEY28891.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
gi|261745529|gb|EEY33455.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
gi|262551549|gb|EEZ07539.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
gi|264659818|gb|EEZ30079.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
M292/94/1]
gi|294819889|gb|EFG36888.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
gi|297174468|gb|EFH33815.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
B3196]
gi|340560112|gb|AEK55350.1| DNA polymerase III, epsilon subunit [Brucella pinnipedialis B2/94]
gi|343383886|gb|AEM19378.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
gi|358259313|gb|AEU07048.1| DNA polymerase III subunit epsilon [Brucella suis VBI22]
gi|363399818|gb|AEW16788.1| DNA polymerase III, epsilon subunit [Brucella abortus A13334]
gi|363403909|gb|AEW14204.1| DNA polymerase III, epsilon subunit [Brucella canis HSK A52141]
gi|374535795|gb|EHR07316.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str.
NI486]
gi|374539714|gb|EHR11217.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str.
NI435a]
gi|374543338|gb|EHR14821.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str.
NI474]
gi|374549001|gb|EHR20447.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str.
NI488]
gi|374552036|gb|EHR23465.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str.
NI016]
gi|374552408|gb|EHR23836.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str.
NI010]
gi|374554499|gb|EHR25910.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str.
NI259]
gi|374557547|gb|EHR28943.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str.
NI021]
Length = 234
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 95/202 (47%), Gaps = 28/202 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLG--GENSTFQTLVNPK-RQV-PNA-HVHGITTDM 184
IVFD ETTG R +R+IEI +L+ TF +NP+ RQV P+A VHGI+ +
Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQ 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P +++ L ++ + VAHNA FD+ F+ E +R +
Sbjct: 64 LL--DKPVFAEILDEFLEFIDGAR-------LVAHNA-MFDLGFINAELARLDQAEITSE 113
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHR----AMADVNCLSLILQ 300
+DTL LAR G + SL AL + YGI ++HR A+ D L+ +
Sbjct: 114 HIVDTLALARRKHPMGPN------SLDALCKRYGID---NSHRTLHGALLDAQILAEVYI 164
Query: 301 RLTFDLKLSLCDLIERGFTPSD 322
L + +L +E G D
Sbjct: 165 ELIGGKQTALGLTMESGSAGGD 186
>gi|381395756|ref|ZP_09921451.1| DNA polymerase III subunit epsilon [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379328635|dbj|GAB56584.1| DNA polymerase III subunit epsilon [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 714
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 28/230 (12%)
Query: 77 TIQSHKLKNIKFEATSTTINVNKTEISKIQRIQHYDIE-QIIAENKDLAKLVTAIVFDIE 135
++++KL+ + +A T+ N ++ ++Q ++ + I+ I L + V DIE
Sbjct: 500 VLENNKLRFEEVKAQGDTLRRN--QLMQLQSLRGFGIDVGITTVGWTLDPMQAYAVIDIE 557
Query: 136 TTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPR 192
TTG +I EI ++ GE +Q+L+NP+R++P+ + GIT DMV D P
Sbjct: 558 TTGGRAGTHKITEIGMVKMVNGEIVDQWQSLINPQRRIPSMITSLTGITNDMVA--DAPL 615
Query: 193 MEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCS--YEVPNNWLFMDTL 250
D+ L + ++ +FVAHN +FD F+ EF+R + Y+ P
Sbjct: 616 FADIADELEAFTEN-------CIFVAHNV-NFDYGFIREEFARINRHYKRPK-------- 659
Query: 251 TLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
+ M++ LPS SL L ++ I + HRA++D S +L+
Sbjct: 660 LCTVQQMRTHYKGLPS-YSLANLTRHFDIGM-QRHHRALSDAVAASELLK 707
>gi|403383304|ref|ZP_10925361.1| DNA polymerase III polC-type [Kurthia sp. JC30]
Length = 981
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 20/179 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTD 183
T +VFD+ETTG S + IIE+A ++ GE F++ NP + + + GIT D
Sbjct: 426 ATFVVFDVETTGLSAAYDTIIELAAVKIIDGEVVDKFESFSNPHHPLSSTTIELTGITDD 485
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV D P + D+I ++ G + VAHNA SFD+ FL + + + ++
Sbjct: 486 MV--KDAPEVVDMIAKFHDFI-------GDSIVVAHNA-SFDIGFLYEAYKKAGIDHFDH 535
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ +DTL LAR L + ++ L L + + I L HRA+ D +L L
Sbjct: 536 SV-IDTLELARMLYPTMKNH-----RLNTLCKKFNIELT-QHHRAIYDTEATGYLLLHL 587
>gi|403667581|ref|ZP_10932886.1| DNA polymerase III polC-type [Kurthia sp. JC8E]
Length = 1444
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 20/179 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTD 183
T +VFD+ETTG S + IIE+A ++ GE TF++ NP + + GIT D
Sbjct: 426 ATFVVFDVETTGLSAAYDTIIELAAVKIVDGEVVDTFESFSNPHHPLSATTIELTGITDD 485
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P +E++I ++ G + VAHNA SFD+ FL + + + N+
Sbjct: 486 MVRT--APEVEEMITKFHEFI-------GDGIVVAHNA-SFDIGFLYEAYKKADIDCFNH 535
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ +DTL LAR L + ++ L L + + I L HRA+ D +L L
Sbjct: 536 PV-IDTLELARLLYPTMKNH-----RLNTLCKKFNIDLT-QHHRAIYDTEATGYLLLHL 587
>gi|226186195|dbj|BAH34299.1| putative DNA polymerase III epsilon subunit [Rhodococcus
erythropolis PR4]
Length = 586
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG S + + I EI + GGE TLV+P R +P + GITT M
Sbjct: 40 TFVVVDLETTGGSADQDSITEIGAVKIRGGEVLGEMATLVDPGRSIPPYIVELTGITTAM 99
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ P +E ++P L + + G +L VAHNA FD+ FL SR + P ++
Sbjct: 100 LIG--APPIERVLPAFLEFAE------GAVL-VAHNA-PFDIGFLKAAASRSARPWP-SF 148
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ LAR ++ PS V L AL + + HRA+ D +L L
Sbjct: 149 RVLCTVKLARRVLTR--DEAPS-VKLSALAHLFQV-TTQPTHRALDDARATVDVLHGL 202
>gi|56477410|ref|YP_158999.1| excinuclease complex nuclease subunit Cho [Aromatoleum aromaticum
EbN1]
gi|56313453|emb|CAI08098.1| Nuclease subunit Cho of the excinuclease complex (UvrC homolog
protein) [Aromatoleum aromaticum EbN1]
Length = 469
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 21/169 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
++ D+ETTG + ++R+ EIA + GE +++LVNP+R +P + GIT +MV
Sbjct: 8 VLIDVETTGANPVSDRVTEIAVLRIERGEIVGRWESLVNPERPIPALIQRLVGITDEMVA 67
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P +L + ++ +FVAHNAR FD F+ NEFSR + +
Sbjct: 68 G--APTFAELADSVRGHLDG-------AVFVAHNAR-FDYGFIRNEFSRLGQQFEAS--V 115
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL 295
+ T+ L+R L + L AL E +G G+ HRAM D + L
Sbjct: 116 LCTVKLSRALYPEH-----HRHGLDALIERHGF-TCGARHRAMGDTDVL 158
>gi|306835084|ref|ZP_07468126.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC
49726]
gi|304569032|gb|EFM44555.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC
49726]
Length = 231
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 16/142 (11%)
Query: 131 VFDIETTGFSRENERIIEIAF--QDLLGGENSTFQTLVNPK-RQVPNAHVHGITTDMVCK 187
V D ETTG ++ +RIIE+A D ++ TL++P + + N+H+HGIT DMV
Sbjct: 33 VIDTETTGVNKRYDRIIELAAVRADAHFNPVDSWHTLLSPDGKAIKNSHIHGITNDMVAT 92
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCS--YEVPNNWL 245
P D+ Y+ Q +AHNA FD +I E R + + + +
Sbjct: 93 --APTFSDVYGDFTSYIDGMQ-------LLAHNA-PFDSKMIIAEVDRMTGVGDSEDEYF 142
Query: 246 -FMDTLTLARELMKSGGSNLPS 266
F+DT+ LA++++ G NLP+
Sbjct: 143 PFIDTIDLAKQMLDHGPYNLPA 164
>gi|293115337|ref|ZP_05790986.2| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
gi|292810483|gb|EFF69688.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
Length = 1476
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR 170
D+ +II ++K T +VFD+ETTG S N+ IIEI + + F T VNPK
Sbjct: 434 DLRKIIFDSKGQKFDDTYVVFDLETTGLSPVNDSIIEIGAVKIQNKKVVDRFSTFVNPKI 493
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + GI MV D +E+++P L + + VAHNA FDV F
Sbjct: 494 PIPYNIEQLTGIDDSMVVDADT--IENILPEFLKFCDGA-------VMVAHNAE-FDVTF 543
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
I E ++ +DT++LAR L+ + G K +L + + + L+ HRA
Sbjct: 544 -IREKTKTILGKAFECTVVDTVSLARALIPNLG-----KFTLDHVAKALNVSLL-HHHRA 596
Query: 289 MADVNCLSLILQRLTFDLKL 308
+ D C + I L L++
Sbjct: 597 VDDAECCADIFLALVARLEM 616
>gi|320449814|ref|YP_004201910.1| DNA polymerase III subunit epsilon [Thermus scotoductus SA-01]
gi|320149983|gb|ADW21361.1| DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01]
Length = 637
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 28/167 (16%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGG---ENSTFQTLVNPKRQVPNA--HVHGITTDMV 185
FD+ETTG E + II + +LG + F+ LVNP R +P A VHG+T +M+
Sbjct: 455 AFDLETTGLDPEKDAIIALGAVHILGKTVLRHEVFEALVNPGRPIPKASTEVHGLTWEML 514
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
+ P++E+++P +++ + +AHN +FD+ FL R + P
Sbjct: 515 K--EKPKLEEVLPGFRLFLED-------TVLLAHNG-AFDMAFL----RRVGIDQPP--- 557
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
+DTL L+ L + L+ L E +G+P++G H A+ D
Sbjct: 558 LVDTLLLSYLLFPDLQDH-----RLETLAERFGVPVIGR-HTALGDA 598
>gi|29839853|ref|NP_828959.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC]
gi|29834200|gb|AAP04837.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC]
Length = 249
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 27/177 (15%)
Query: 123 LAKLVTAIVFDIETTGFSRENERIIEIA-----FQDLLGGENSTFQTLVNPKRQVP--NA 175
L K + D E TG + +RIIE A F ++ + +TL+NP R + +
Sbjct: 3 LLKDTIFVCLDCEMTGLDVKKDRIIEFAAMRFTFDKVI----DSMETLINPDRVISAESQ 58
Query: 176 HVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSR 235
+H I+ M+ D PR+ ++ P +KS K G YI V H+ FD+ L E R
Sbjct: 59 RIHRISDAML--KDQPRIAEVFP----KIKSFLKEGDYI--VGHSV-GFDLQVLTQEAER 109
Query: 236 CSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
+ + +DTL LA+E S + SL+AL ++ +P G+ HRAM DV
Sbjct: 110 IGESFLSKYYIIDTLRLAKEYGDSPNN------SLEALAVHFNVPYDGN-HRAMKDV 159
>gi|357008006|ref|ZP_09073005.1| PolC [Paenibacillus elgii B69]
Length = 1437
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 22/177 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLL-GGENSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
++FDIETTG S + +IIE+A + G E F T ++P ++P + IT DMV
Sbjct: 424 VIFDIETTGLSVTSNKIIELAGVRMKEGKEIDRFATFIDPHERIPYNIQQLTNITDDMV- 482
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY-EVPNNWL 245
P +E+++P + +V G + VAHNAR FD+ F+ R EV N L
Sbjct: 483 -KGAPELEEMLPKFIEFV-------GDSVLVAHNAR-FDIGFIQANCKRLGLPEVTNPVL 533
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
DTL LAR L + ++ L L + + + L + HRA+ D L +L L
Sbjct: 534 --DTLELARLLFPTLKNH-----RLNTLSDKFKVSL-DNHHRAIDDSIALGHVLFHL 582
>gi|407985473|ref|ZP_11166069.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Mycobacterium hassiacum DSM 44199]
gi|407372970|gb|EKF21990.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Mycobacterium hassiacum DSM 44199]
Length = 338
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLL--GGENSTFQTLVNPKRQVPNAHVHGITTDMVCKP 188
V D+ET+GF + R++ IA L G T +L++P HVHG+T +M+
Sbjct: 28 VVDVETSGFHPGHARVVSIAALALSDDGNVEQTLYSLLDPGVDPGPTHVHGLTAEMLAGQ 87
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
PR D++ L+ ++ R VAHN +FD FL+ E E+P + M
Sbjct: 88 --PRFADIVAPLIELLRGRT-------LVAHNV-AFDYSFLVAEAEMIGAELPID-SAMC 136
Query: 249 TLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
T+ LAR L G NL L+ L ++GI + H A+ D L+ IL+
Sbjct: 137 TVELARRL-ALGTENL----RLETLAAHWGITQL-KPHDALDDALVLAQILK 182
>gi|410623347|ref|ZP_11334164.1| DNA polymerase III subunit epsilon [Glaciecola pallidula DSM 14239
= ACAM 615]
gi|410157269|dbj|GAC29538.1| DNA polymerase III subunit epsilon [Glaciecola pallidula DSM 14239
= ACAM 615]
Length = 233
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLGGE--NSTFQTLVNPKRQVPNAH--VHGITTDM 184
IV D ETTG + +E RIIEI +++ + +T+ +NP R + VHGIT +
Sbjct: 4 IVLDTETTGINPKEGHRIIEIGCVEMVNRKLTGNTYHVYINPHRDIEEEAIAVHGITNEF 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN- 243
+ D+P + + + ++K Q + HNA FD+ F+ NEF+ + + N
Sbjct: 64 L--KDMPAFKQIAQEFIDFIKGAQ-------LIIHNA-PFDIGFMDNEFALNNSSIRNTS 113
Query: 244 --WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHR-AMADVNCLSLILQ 300
+DTL LARE M+ G N +L AL YG+ H A+ D L+ +
Sbjct: 114 QICTVLDTLALARE-MRPGQKN-----NLNALCRVYGVDNTHRTHHGALLDSEILAEVYL 167
Query: 301 RLT 303
+T
Sbjct: 168 WMT 170
>gi|413963291|ref|ZP_11402518.1| DNA polymerase III subunit epsilon [Burkholderia sp. SJ98]
gi|413929123|gb|EKS68411.1| DNA polymerase III subunit epsilon [Burkholderia sp. SJ98]
Length = 381
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 21/176 (11%)
Query: 130 IVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVF D+ETTG + +RI EI ++ S + +LVNP+R +P+ + GIT MV
Sbjct: 16 IVFVDLETTGGTFGVDRITEIGVVEVGPAGVSQWTSLVNPQRPIPSFVQQLTGITDAMVR 75
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ P E L LL +K R LF+AHNA FD FL +EF R +
Sbjct: 76 --EAPTFEQLASGLLDRMKGR-------LFIAHNAH-FDHSFLKDEFRRVDLRFAPD--V 123
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ L+R + + S+ L AL + + + + HRA+AD + L Q L
Sbjct: 124 LCTVQLSRAVYPA-----ESRHGLDALVARHAL-VPAARHRALADADLLWQFWQHL 173
>gi|260587424|ref|ZP_05853337.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
20583]
gi|331083705|ref|ZP_08332816.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542291|gb|EEX22860.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
20583]
gi|330403916|gb|EGG83468.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 236
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 35/213 (16%)
Query: 126 LVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITT 182
++ + D+ETTG +RIIEI + E + TL+NP+ ++P+ + GI+
Sbjct: 1 MMEYVALDLETTGLEPSKDRIIEIGAVKVRNKEVVGEYGTLINPQMEIPDRITELTGISN 60
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
DMV P + + LL + + + + HN L+ ++S ++ N
Sbjct: 61 DMVQGK--PLIAQALGELLDFCEE-------LPLLGHN--------LMFDYSFVKHQAVN 103
Query: 243 NWLF-----MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSL 297
+ MDTL LAR L+ LPS+ SLQ LR +Y IP AHRA+ D L
Sbjct: 104 AGMVFEKKGMDTLKLARALL----PELPSR-SLQNLRMHYEIP-QKDAHRALEDARTTYL 157
Query: 298 ILQRLTFDLKLSLCDLIERGFTPSDLINPKKKK 330
+ +RL + + L F P+ LI KK+
Sbjct: 158 LYERLREEFEEKQPKL----FVPNALIYKVKKQ 186
>gi|441164056|ref|ZP_20968400.1| DNA polymerase III subunit epsilon [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440616245|gb|ELQ79393.1| DNA polymerase III subunit epsilon [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 344
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 20/168 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQ--DLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKP 188
V D+ETTG +R++ RI+ A D G + TLVNP+R +HG+T+DM+
Sbjct: 41 VVDVETTGLARDD-RIVSAAVYRLDTHGEVEDHWYTLVNPQRDPGPVWIHGLTSDMLST- 98
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
P +++P L ++ R + VAHNA FD + E++R E P
Sbjct: 99 -APLFPEIVPELSRRLEGR-------VLVAHNA-MFDWSMIAREYARAEAEAPVRQRLC- 148
Query: 249 TLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
T+ L++EL LP+ L++L +YG+ AH A+ D L+
Sbjct: 149 TIALSKELRLP----LPNH-KLESLAAHYGV-KQEHAHHALDDARVLA 190
>gi|68172041|ref|ZP_00545326.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
subunit [Ehrlichia chaffeensis str. Sapulpa]
gi|67998534|gb|EAM85303.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
subunit [Ehrlichia chaffeensis str. Sapulpa]
Length = 239
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 22/192 (11%)
Query: 125 KLVTAIVFDIETTGFSREN-ERIIEIAFQDLLGG--ENSTFQTLVNPKRQVP--NAHVHG 179
K V +V D ETTG + +R+IEI +L+ F +NP+R +P +HG
Sbjct: 5 KGVREVVLDTETTGLDPDGGDRVIEIGCVELIDRVFTGKVFHEYINPERDIPYYATKIHG 64
Query: 180 ITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
IT DM+ D P+ ++ L ++ + + V HNA FD+ F+ E R +
Sbjct: 65 ITIDML--KDKPKFSEIADKFLEFIDNG-------ILVIHNA-GFDIKFIKMELDRINKS 114
Query: 240 VPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLI 298
+++ +DTL LAR+ S +L AL + I L H A+ D L +
Sbjct: 115 YNSDFQVVDTLVLARKKFPGVSS------TLDALCRRFNISLQDRKFHGALLDATLLGKV 168
Query: 299 LQRLTFDLKLSL 310
+L L+ SL
Sbjct: 169 YVQLMGGLQRSL 180
>gi|383787519|ref|YP_005472088.1| DNA polymerase III subunit alpha [Fervidobacterium pennivorans DSM
9078]
gi|383110366|gb|AFG35969.1| DNA polymerase III, alpha chain [Fervidobacterium pennivorans DSM
9078]
Length = 1395
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 100/202 (49%), Gaps = 28/202 (13%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGENS-TFQTLVNPKR-QVPNAHVHGITTDM 184
T +V D+ETTG + + I+EI ++ G+ S F TLV P + + + GIT +M
Sbjct: 386 ATYVVLDLETTGLNPRLDEIMEIGAVKIVEGKISDEFHTLVKPTTLKEKSLQITGITEEM 445
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + ++I L ++K + VAHNA FD+ FL + F+R E N
Sbjct: 446 L--KDAPEIGEVIDKLWQFLKDA-------VLVAHNA-DFDISFLKHTFARFGREF--NP 493
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
++DTL L++ L++ N SL L E++ + HRA+ D R+T
Sbjct: 494 PYIDTLRLSQALLR----NQMKAFSLDKLVEHFKLGKF-QHHRALDDA--------RVTA 540
Query: 305 DLKLSLCDLIER-GFTPSDLIN 325
+ L L +L++R T D IN
Sbjct: 541 RVFLELVELLKRKSITTFDRIN 562
>gi|398382520|ref|ZP_10540605.1| DNA polymerase III, epsilon subunit [Sphingobium sp. AP49]
gi|397726626|gb|EJK87059.1| DNA polymerase III, epsilon subunit [Sphingobium sp. AP49]
Length = 233
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 29/223 (13%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLG--GENSTFQTLVNPKRQVPNA--HVHGITTDM 184
I+FD ETTGF +R++EI +L+ TF NP+R +P+A VHG+++
Sbjct: 4 IIFDTETTGFDPASGDRLVEIGCIELINRVPTGRTFHAYYNPQRDMPSAAEAVHGLSSQF 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + + L+ +++ VAHNAR FD FL +E C+ + +
Sbjct: 64 LS--DKPLFREGVAELMDFLEDSP-------LVAHNAR-FDFGFLNHELKLCARDGVSMD 113
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLILQRLT 303
+DT+ +AR L +K SL AL YGI H A+ D L+ + LT
Sbjct: 114 RMIDTVAIARTLHPG------AKHSLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELT 167
Query: 304 FDLKLSLC-------DLIERGFTPSDLINPKKKKKSKLVSNQE 339
++ L +++ T + ++ P + + S +E
Sbjct: 168 GGRQIGLGLAQEEEKEIVRAELTETAVVRPVRPARVFTASAEE 210
>gi|17988339|ref|NP_540973.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
16M]
gi|17984115|gb|AAL53237.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str.
16M]
Length = 248
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 95/202 (47%), Gaps = 28/202 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLG--GENSTFQTLVNPK-RQV-PNA-HVHGITTDM 184
IVFD ETTG R +R+IEI +L+ TF +NP+ RQV P+A VHGI+ +
Sbjct: 18 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQ 77
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P +++ L ++ + VAHNA FD+ F+ E +R +
Sbjct: 78 LL--DKPVFAEILDEFLEFIDGAR-------LVAHNA-MFDLGFINAELARLDQAEITSE 127
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHR----AMADVNCLSLILQ 300
+DTL LAR G + SL AL + YGI ++HR A+ D L+ +
Sbjct: 128 HIVDTLALARRKHPIGPN------SLDALCKRYGID---NSHRTLHGALLDAQILAEVYI 178
Query: 301 RLTFDLKLSLCDLIERGFTPSD 322
L + +L +E G D
Sbjct: 179 ELIGGKQTALGLTMESGSAGGD 200
>gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec]
gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
Length = 389
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 91/201 (45%), Gaps = 32/201 (15%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGENST----FQTLVNPKRQVPNAHVHGITTD-MV 185
V D+ETTG S +R++ +A +L + T + TL++P H+HG+T +
Sbjct: 79 VVDVETTGLSPTRDRVLSVAV--VLTAADGTVEHRWSTLLDPGCDPGPVHIHGLTRQRLA 136
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
P + D + LL G +L VAHNA +FD L E R +P W
Sbjct: 137 GSPTFAAVADEVAGLL---------AGRVL-VAHNA-AFDWRMLAGEAMRIGTTIPVEWR 185
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT-- 303
TLTLA L G LPS + L +L Y+G+ + AH A D L+ +L R+
Sbjct: 186 LC-TLTLASRL----GLELPS-LRLASLAAYWGV-VQRRAHDAQDDAEVLAALLPRILQR 238
Query: 304 -----FDLKLSLCDLIERGFT 319
+L L+ C + G T
Sbjct: 239 AADQYLELPLTRCGVDHDGVT 259
>gi|374599995|ref|ZP_09672997.1| Exonuclease RNase T and DNA polymerase III [Myroides odoratus DSM
2801]
gi|423325158|ref|ZP_17302999.1| hypothetical protein HMPREF9716_02356 [Myroides odoratimimus CIP
103059]
gi|373911465|gb|EHQ43314.1| Exonuclease RNase T and DNA polymerase III [Myroides odoratus DSM
2801]
gi|404607167|gb|EKB06701.1| hypothetical protein HMPREF9716_02356 [Myroides odoratimimus CIP
103059]
Length = 257
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 22/173 (12%)
Query: 132 FDIETTGFSRENERIIEIAFQDLLGGENSTFQT-LVNPKRQVPNA--HVHGITTDMVCKP 188
FD+ETTG +RI+EIA + N +T LVNP+R +P A +HGIT + V
Sbjct: 12 FDLETTGVDVARDRIVEIAILKVFPNGNKESKTWLVNPERPIPEASSKIHGITDEKVANE 71
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP-NNWLFM 247
P ++L P++ +K G N+ FD+P L E R + N + +
Sbjct: 72 --PTFKELAPLVYQMIKDSDLAG-------FNSDRFDIPLLAEELLRAGVDFDLGNRVTV 122
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
D T+ + + +L A ++Y + +AH A AD N IL+
Sbjct: 123 DIQTIFHK---------KEERTLSAAYKFYCNESLENAHSAAADTNATYEILK 166
>gi|291280248|ref|YP_003497083.1| hypothetical protein DEFDS_1873 [Deferribacter desulfuricans SSM1]
gi|290754950|dbj|BAI81327.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 200
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 26/182 (14%)
Query: 131 VFDIETTGFS-RENERIIEIAFQDLLGGEN----STFQTLVNPKRQVP--NAHVHGITTD 183
V D ETTG S + R++EIA L G N F TL+NPK+ +P +H I+ +
Sbjct: 14 VVDTETTGLSPYKGARLVEIAAVRLDEGLNIRLDRGFSTLINPKKPIPFQAYKIHKISDE 73
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV D P +E+++P YV++ +FVAHNA FD F+ + + P
Sbjct: 74 MV--KDAPTIEEVLPHFSKYVENT-------VFVAHNA-PFDFKFIDYFYKKTGMNCPLI 123
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLV--GSA-HRAMADVNCLSLILQ 300
+ +DTL L+R ++ S SL +L +++ I L GS HRA+ D ++I +
Sbjct: 124 AV-IDTLKLSRRIIPGLKS-----YSLDSLIQHFNIKLKINGSYRHRAIYDALHTAIIFK 177
Query: 301 RL 302
+L
Sbjct: 178 KL 179
>gi|451936675|ref|YP_007460529.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777598|gb|AGF48573.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 227
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 24/182 (13%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLGGE--NSTFQTLVNPKRQV-PNA-HVHGITTDM 184
I+FD ETTG + R+IEI +++ ++ F +NP R + P A VHG+T D
Sbjct: 4 IIFDTETTGIDPVKGHRVIEIGCVEVIDRTITDNYFHVYINPDRDIDPGALSVHGLTVDF 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D PR + ++ + ++K + +AHNA SFDV F+ NE S +E ++
Sbjct: 64 LS--DKPRFKSVVNDFIEFIKDAE-------LIAHNA-SFDVKFINNELSMVGFESLISY 113
Query: 245 L--FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLILQR 301
+D+L AR+L + G N SL AL ++Y I H A+ D L+ +
Sbjct: 114 CSKIIDSLDHARKL-RPGKRN-----SLDALCDFYNISNKDRVLHGALLDAKLLANVWLS 167
Query: 302 LT 303
+T
Sbjct: 168 MT 169
>gi|56416800|ref|YP_153874.1| DNA polymerase III subunit epsilon [Anaplasma marginale str. St.
Maries]
gi|222475164|ref|YP_002563580.1| DNA polymerase III subunit epsilon [Anaplasma marginale str.
Florida]
gi|254995002|ref|ZP_05277192.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
Mississippi]
gi|255003148|ref|ZP_05278112.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
Puerto Rico]
gi|255004274|ref|ZP_05279075.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
Virginia]
gi|56388032|gb|AAV86619.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St.
Maries]
gi|222419301|gb|ACM49324.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
Florida]
Length = 232
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 130 IVFDIETTGF-SRENERIIEIAFQDLLG--GENSTFQTLVNPKRQVPNA--HVHGITTDM 184
IV D ETTG + +RIIEI +L+ F +NP+R +P A +HGITTDM
Sbjct: 6 IVLDTETTGLDAASGDRIIEIGCVELVDFVMTGQVFHKYINPERDIPIAATKIHGITTDM 65
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V ++P+ ++ L++V+ + V HNA FD+ F+ E R N
Sbjct: 66 V--KNMPKFAEMADQFLNFVQDS-------VLVIHNA-GFDLKFIETEMERIGKTKLYNP 115
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLILQRLT 303
+ +DTL +AR +P+ SL AL + + I H A+ D L+ +
Sbjct: 116 V-VDTLEVARRKF----PGMPA--SLDALCKRFDISTSSRRFHGALKDATLLARVY---- 164
Query: 304 FDLKLSLCDLIER--GFTPSDLINPKKKKKS 332
+ LC I+R GF DL + K+
Sbjct: 165 ----VELCGGIQRSLGFVSGDLTQSTRASKA 191
>gi|395216281|ref|ZP_10401257.1| DNA polymerase III subunit epsilon [Pontibacter sp. BAB1700]
gi|394455433|gb|EJF09903.1| DNA polymerase III subunit epsilon [Pontibacter sp. BAB1700]
Length = 469
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 21/175 (12%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ DIETTG +RI EIA G E + TL+NP+R +P + + GIT DMV
Sbjct: 4 IIDIETTGSQPTQDRITEIAIFIHDGKEIVDKYSTLINPQRPIPYYISQLTGITDDMV-- 61
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P+ ++ ++ + + ++FVAHN R FD F+ EF+ + L
Sbjct: 62 QDAPKFYEVAKEIVQFTEG-------MVFVAHNVR-FDYSFIKKEFADLGFTFQRKTLC- 112
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
T+ L+R L+ LPS SL L + IPL HRA+ D + + +L
Sbjct: 113 -TVRLSRSLI----PGLPS-YSLGKLCKSIDIPL-QMRHRAIGDAEATAKLFDKL 160
>gi|182419729|ref|ZP_02950970.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
butyricum 5521]
gi|237665534|ref|ZP_04525522.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182376466|gb|EDT74047.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
butyricum 5521]
gi|237658481|gb|EEP56033.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 1472
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 21/166 (12%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVCK 187
V D+ETTGFS + E+I EI + G+ F T VNP++ +P V IT DMV
Sbjct: 448 VLDLETTGFSPKLEKITEIGIMKVKDGKVIDKFSTFVNPEKPIPPRVVEVTNITDDMVRN 507
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
+ ++ + P +L +++ G IL VAHNA FD+ FL + ++ ++ ++
Sbjct: 508 AET--IDKVFPKMLEFIE------GSIL-VAHNAE-FDIGFLRHYAKVLGHDF--DFTYL 555
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN 293
DTL+LA++L S L + + GI V AHRA+ DV+
Sbjct: 556 DTLSLAQDLFPQYKS-----YKLGRIAKNLGIK-VEVAHRALDDVD 595
>gi|110638081|ref|YP_678290.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC
33406]
gi|110280762|gb|ABG58948.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC
33406]
Length = 449
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 95/208 (45%), Gaps = 32/208 (15%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ DIETTG RIIEIA G + T+QTL+NP+R++P + GI T+MV
Sbjct: 5 IIDIETTGGHASGNRIIEIAIYKFDGEKITDTYQTLINPERRIPVFITSLTGIDTEMVA- 63
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
D P D+ + + + +FVAHN +FD F+ E + +P N +
Sbjct: 64 -DAPVFADVAREITDFTRDS-------VFVAHNV-NFDYTFVKKELQ--ALNMPYNLPKL 112
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLK 307
T+ L+R++ LPS SL L GI V + HRA D +L K
Sbjct: 113 CTVRLSRKIF----PGLPS-YSLGNLCGSLGID-VQNRHRAAGDAEATVRLLN------K 160
Query: 308 LSLCDLIERGFTPSDLINPKKKKKSKLV 335
L L D GF P L KK K L+
Sbjct: 161 LLLND--TEGFIPKSL---KKNSKETLL 183
>gi|298369304|ref|ZP_06980622.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
sp. oral taxon 014 str. F0314]
gi|298283307|gb|EFI24794.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
sp. oral taxon 014 str. F0314]
Length = 463
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 96/206 (46%), Gaps = 39/206 (18%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCKP 188
V D+E+TG + +RI E+A G ++ LVNP++ +P A + GIT + V
Sbjct: 23 VVDLESTGGNFYRDRITEVAVLRFERGAAKRYEWLVNPQQPIPKFVADLTGITDEAVSGA 82
Query: 189 DV--PRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
V DL+P+L V VAHN+R FD FL +EF R + L
Sbjct: 83 PVFSDIAADLLPLLHGAV-----------VVAHNSR-FDYTFLRHEFRRAGMDFAAPALC 130
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
T+ L+R L + +L ++ E +GI V S HRAMADV LS L+R
Sbjct: 131 --TVQLSRRLYPQF-----YRHNLDSIIERFGI-AVESRHRAMADVAALSDFLER----- 177
Query: 307 KLSLCDLIERGFTPSD-----LINPK 327
L+E+G + L+NPK
Sbjct: 178 -----SLVEKGAEEWERHCRSLMNPK 198
>gi|265983066|ref|ZP_06095801.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
gi|306839740|ref|ZP_07472542.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
gi|306842813|ref|ZP_07475453.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
gi|306843489|ref|ZP_07476090.1| DNA polymerase III, epsilon subunit [Brucella inopinata BO1]
gi|264661658|gb|EEZ31919.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
gi|306276180|gb|EFM57880.1| DNA polymerase III, epsilon subunit [Brucella inopinata BO1]
gi|306287007|gb|EFM58518.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
gi|306405200|gb|EFM61477.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
Length = 234
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 95/202 (47%), Gaps = 28/202 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLG--GENSTFQTLVNPK-RQV-PNA-HVHGITTDM 184
IVFD ETTG R +R+IEI +L+ TF +NP+ RQV P+A VHGI+ +
Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQ 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P +++ L ++ + VAHNA FD+ F+ E +R +
Sbjct: 64 LL--DKPVFAEILDEFLEFIDGAR-------LVAHNA-MFDLGFINAELARLDQAEIASE 113
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHR----AMADVNCLSLILQ 300
+DTL LAR G + SL AL + YGI ++HR A+ D L+ +
Sbjct: 114 HIVDTLALARRKHPMGPN------SLDALCKRYGID---NSHRTLHGALLDAQILAEVYI 164
Query: 301 RLTFDLKLSLCDLIERGFTPSD 322
L + +L +E G D
Sbjct: 165 ELIGGKQTALGLTMESGSAGGD 186
>gi|225853502|ref|YP_002733735.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457]
gi|256263016|ref|ZP_05465548.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
gi|260562976|ref|ZP_05833462.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
gi|265992096|ref|ZP_06104653.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
Rev.1]
gi|384212419|ref|YP_005601503.1| DNA polymerase III subunit epsilon [Brucella melitensis M5-90]
gi|384409521|ref|YP_005598142.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
gi|384446059|ref|YP_005604778.1| DNA polymerase iii, epsilon chain [Brucella melitensis NI]
gi|225641867|gb|ACO01781.1| DNA polymerase III, epsilon subunit [Brucella melitensis ATCC
23457]
gi|260152992|gb|EEW88084.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
gi|263003162|gb|EEZ15455.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
Rev.1]
gi|263092889|gb|EEZ17064.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
gi|326410068|gb|ADZ67133.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
gi|326539784|gb|ADZ87999.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90]
gi|349744048|gb|AEQ09591.1| DNA polymerase iii, epsilon chain [Brucella melitensis NI]
Length = 234
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 95/202 (47%), Gaps = 28/202 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLG--GENSTFQTLVNPK-RQV-PNA-HVHGITTDM 184
IVFD ETTG R +R+IEI +L+ TF +NP+ RQV P+A VHGI+ +
Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQ 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P +++ L ++ + VAHNA FD+ F+ E +R +
Sbjct: 64 LL--DKPVFAEILDEFLEFIDGAR-------LVAHNA-MFDLGFINAELARLDQAEITSE 113
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHR----AMADVNCLSLILQ 300
+DTL LAR G + SL AL + YGI ++HR A+ D L+ +
Sbjct: 114 HIVDTLALARRKHPIGPN------SLDALCKRYGID---NSHRTLHGALLDAQILAEVYI 164
Query: 301 RLTFDLKLSLCDLIERGFTPSD 322
L + +L +E G D
Sbjct: 165 ELIGGKQTALGLTMESGSAGGD 186
>gi|389576460|ref|ZP_10166488.1| DNA polymerase III, alpha chain [Eubacterium cellulosolvens 6]
gi|389311945|gb|EIM56878.1| DNA polymerase III, alpha chain [Eubacterium cellulosolvens 6]
Length = 1536
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTG S +IIEI + GE S F +NP+ +P + IT MV
Sbjct: 503 VVFDIETTGLSNLTCKIIEIGAVRVEHGEVVSRFSEFINPEVPIPFKITELTSITDAMV- 561
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E+++P K R+ G +L VAHNA FD F+ E R +W F
Sbjct: 562 -EDAPVIEEILP------KFREFCGDAVL-VAHNA-DFDTGFIKMECERQKL----DWEF 608
Query: 247 --MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DT+ +A+ L+ S+ L + + G+PL HRA+ D C + I +
Sbjct: 609 TYVDTVAMAQMLLPG-----LSRFKLDTVAKAVGVPL-EHHHRAVDDAECTAWIFVKFVE 662
Query: 305 DLK 307
LK
Sbjct: 663 MLK 665
>gi|227486439|ref|ZP_03916755.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
gi|227235620|gb|EEI85635.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
Length = 1463
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 21/176 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTG + + I EI + GE T+ L+NP+R +P + GIT M+
Sbjct: 449 VVFDIETTGLLKYRDAITEIGAVRVENGEITETYNQLINPERILPEKIVEITGITDAMLA 508
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P++++++P L + G L V N FDV F+ R + + ++
Sbjct: 509 --DKPKIDEVLPGFLDFC-------GDSLIVGQNT-DFDVGFIRENAKRLGLKF--DPIY 556
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL +AR L G K SL + IP + HRA D + I ++
Sbjct: 557 LDTLPMARALFDDMG-----KFSLDKIARKLDIPAF-NHHRASDDARATAQIFIKM 606
>gi|385682020|ref|ZP_10055948.1| hypothetical protein AATC3_39113 [Amycolatopsis sp. ATCC 39116]
Length = 573
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG + I EI + GGE F TLV+P VP V GIT+ M
Sbjct: 26 TFVVFDLETTGTKPGPDGITEIGAVKVRGGEVLGEFATLVDPGMPVPPQIVALTGITSAM 85
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P+++ ++P L + + VAHNA FD F+ Y P
Sbjct: 86 LH--DAPKIDRVLPAFLEFASG-------AVLVAHNA-PFDTSFMRAACLHHGYPWPKPA 135
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQ 300
+ T+ LAR ++ + PS L AL +G P+ + HRA+ D V+ L +L+
Sbjct: 136 VVC-TVRLARRVLTR--QDSPS-FRLSALAALFGSPVTPN-HRALDDARATVHVLHALLE 190
Query: 301 RLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
R+ SL +L++ + P + P +++K + ++
Sbjct: 191 RVGNVGVQSLEELLD--YLPE--VTPAQRRKRGMAAH 223
>gi|443293084|ref|ZP_21032178.1| DNA polymerase III polC-type [Micromonospora lupini str. Lupac 08]
gi|385882942|emb|CCH20329.1| DNA polymerase III polC-type [Micromonospora lupini str. Lupac 08]
Length = 584
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 18/213 (8%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG + + I EI + GGE TLVNP + +P + GIT M
Sbjct: 31 TFVVVDLETTGGAPDGGGITEIGAVKVRGGEQLGELATLVNPGQPIPPFITVLTGITQAM 90
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ P +E ++P L ++ + VAHNA +DV FL ++ + PN
Sbjct: 91 LVP--APPIEQVLPSFLEFIAD-------AVLVAHNA-PYDVGFLKAACAKHGHRWPNPR 140
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DT LAR ++ +P++ L L Y+ HRA+ D +L L
Sbjct: 141 V-LDTAALARRVLTR--DEVPNR-KLGTLAAYFRT-ATQPTHRALDDAKATVDVLHGLIG 195
Query: 305 DLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L D + + + P +++K L
Sbjct: 196 RLGGHRVDTVGDAIEFARAVTPTQRRKRHLAEG 228
>gi|73667124|ref|YP_303140.1| DNA polymerase III subunit epsilon [Ehrlichia canis str. Jake]
gi|72394265|gb|AAZ68542.1| DNA polymerase III, epsilon subunit :DNA polymerase 3, epsilon
subunit [Ehrlichia canis str. Jake]
Length = 239
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 22/192 (11%)
Query: 125 KLVTAIVFDIETTGFSREN-ERIIEIAFQDLLGG--ENSTFQTLVNPKRQVP--NAHVHG 179
K V +V D ETTG + +RIIEI +L+ F +NP+R +P +HG
Sbjct: 5 KGVREVVLDTETTGLDPDGGDRIIEIGCVELIDRVFTGKVFHEYINPERDIPYYATKIHG 64
Query: 180 ITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
IT DM+ D P+ ++ L +V + + V HNA FD+ F+ E + +
Sbjct: 65 ITIDML--KDKPKFSEIADKFLEFVNNS-------VLVIHNA-GFDIKFIKMELDKIQKD 114
Query: 240 VPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLI 298
+++ +DTL LAR+ S +L AL + I L H A+ D L +
Sbjct: 115 YDSDFQVVDTLILARKKFPGVSS------TLDALCRRFNISLQDRKFHGALLDATLLGKV 168
Query: 299 LQRLTFDLKLSL 310
+L L+ SL
Sbjct: 169 YVQLMGGLQRSL 180
>gi|315497200|ref|YP_004086004.1| DNA polymerase III subunit epsilon [Asticcacaulis excentricus CB
48]
gi|315415212|gb|ADU11853.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
48]
Length = 232
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 92/194 (47%), Gaps = 34/194 (17%)
Query: 130 IVFDIETTGFS-RENERIIEIA---FQDLLGGENSTFQTLVNPKRQV-PNA-HVHGITTD 183
IV D ETTG ++ R+IE+ +DLL TF NP+R + P+A VHGIT +
Sbjct: 4 IVLDTETTGIDPKKGHRLIEVGCIEIEDLLP-TGKTFHHYFNPERLIEPDAIRVHGITDE 62
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEV--P 241
MV D P+ DL + +V G +AHNA SFD F+ E R + P
Sbjct: 63 MVA--DKPKFADLAQAFIDFV-------GDAPIIAHNA-SFDRGFINMELERLGLDPTDP 112
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQ 300
+ W+ DTL LAR G +N SL AL + Y I L H A+ D L+ +
Sbjct: 113 DRWV--DTLELARYKF-PGMAN-----SLDALCKRYNISLAERDKHGALLDARLLAGVYL 164
Query: 301 RLT------FDLKL 308
L+ DLK+
Sbjct: 165 ELSGGKERGLDLKM 178
>gi|291300433|ref|YP_003511711.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia
nassauensis DSM 44728]
gi|290569653|gb|ADD42618.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia
nassauensis DSM 44728]
Length = 410
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 131 VFDIETTGF-SRENERIIEIA--FQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCK 187
VFD ETTG + RIIEIA D G +T+ TL+NP R + H+HGI V
Sbjct: 4 VFDTETTGIIPGMHHRIIEIAVVLADDEGSIENTWSTLLNPDRDLGPQHIHGIKARQVI- 62
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP-NNWLF 246
D P+ D+ L+ + R VAHN FD+ FL EF R +++ N+ L
Sbjct: 63 -DAPKFGDIAGQLIQMLSGRT-------LVAHNL-PFDLRFLSAEFERLGHQLTYNHHLG 113
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
+ T+ + ++ +LP + G+ L G H A++D + +L+
Sbjct: 114 VCTMNWSTTFLEGASRSLPECC------KAAGVQLTGW-HSALSDAEATAALLK 160
>gi|390954807|ref|YP_006418565.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Aequorivita sublithincola DSM 14238]
gi|390420793|gb|AFL81550.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Aequorivita sublithincola DSM 14238]
Length = 257
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 22/173 (12%)
Query: 132 FDIETTGFSRENERIIEIAFQDLLGGENSTFQTL-VNPKRQVP--NAHVHGITTDMVCKP 188
FD+ETTG + +RI+EIA Q + N T VNP+ +P ++ +HGIT +MV
Sbjct: 12 FDLETTGVNVAKDRIVEIAIQKVFPNGNEESHTWRVNPEMSIPAESSAIHGITDEMVA-- 69
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP-NNWLFM 247
D P ++L + +K GG+ N+ FD+P L E R + L +
Sbjct: 70 DEPTFKELAAKVYALIKDSD-LGGF------NSNRFDIPLLAEELLRAEIDFDLKKSLSV 122
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
D T+ ++ K +L+A ++Y + AH A AD N +L+
Sbjct: 123 DVQTIFHKM---------EKRTLEAAYKFYCDKDLKDAHSAAADTNATYEVLK 166
>gi|408376144|ref|ZP_11173749.1| DNA polymerase III subunit epsilon [Agrobacterium albertimagni
AOL15]
gi|407749611|gb|EKF61122.1| DNA polymerase III subunit epsilon [Agrobacterium albertimagni
AOL15]
Length = 233
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 81/156 (51%), Gaps = 23/156 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGG--ENSTFQTLVNP-KRQV-PNA-HVHGITTDM 184
I+FD ETTG + +R+IEI +LL TF +NP R+V P+A VHGIT +
Sbjct: 4 IIFDTETTGLDNKADRVIEIGGIELLNHFPTGRTFHVYINPGDRKVHPDALAVHGITDEF 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE-VPNN 243
+ D P +++ L + + ++AHNA SFD+ F+ EF R S VP++
Sbjct: 64 L--KDKPVFAEIVSDLQEFFDGAK-------WIAHNA-SFDMGFINAEFERLSLAPVPSD 113
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGI 279
+ +DTL LAR G + SL AL YGI
Sbjct: 114 -MVIDTLALARRKHPMGPN------SLDALCRRYGI 142
>gi|405981060|ref|ZP_11039389.1| exonuclease, DNA polymerase III, epsilon subunit [Actinomyces neuii
BVS029A5]
gi|404393079|gb|EJZ88136.1| exonuclease, DNA polymerase III, epsilon subunit [Actinomyces neuii
BVS029A5]
Length = 581
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 100/218 (45%), Gaps = 24/218 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG I EI + GGE F TLVNP++ +P + GIT
Sbjct: 35 VTFVVVDLETTGMG-AGAAITEIGAVKVRGGEVLGEFSTLVNPEQYIPPKITALTGITNA 93
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
V + P + + P L + + + VAHNA +FDV FL SR +Y P+
Sbjct: 94 AVSR--APVIASVFPTFLEFAYFSDQ----TVLVAHNA-AFDVGFLKRAASRLAYPWPSP 146
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ +L L IP HRA++D V+ L +L
Sbjct: 147 -TVLDTLALARLVLPRPQVRNHKLGTLAGLFSTSTIP----DHRALSDARATVDVLYGLL 201
Query: 300 QRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
++ L L L E T S + K+++K LV N
Sbjct: 202 EKAA---PLGLTHL-EDVRTISKPVPLKRRRKVALVQN 235
>gi|423378343|ref|ZP_17355627.1| DNA polymerase III polC-type [Bacillus cereus BAG1O-2]
gi|423547102|ref|ZP_17523460.1| DNA polymerase III polC-type [Bacillus cereus HuB5-5]
gi|423623106|ref|ZP_17598884.1| DNA polymerase III polC-type [Bacillus cereus VD148]
gi|401178823|gb|EJQ85996.1| DNA polymerase III polC-type [Bacillus cereus HuB5-5]
gi|401259879|gb|EJR66053.1| DNA polymerase III polC-type [Bacillus cereus VD148]
gi|401636609|gb|EJS54363.1| DNA polymerase III polC-type [Bacillus cereus BAG1O-2]
Length = 1433
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 417 TYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGITDDM 476
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + NN
Sbjct: 477 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLAKTNNP 526
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 527 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 577
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF + +N
Sbjct: 578 -----LKDVIEKGFEYHNQLN 593
>gi|117928176|ref|YP_872727.1| hypothetical protein Acel_0968 [Acidothermus cellulolyticus 11B]
gi|117648639|gb|ABK52741.1| DNA polymerase III, epsilon subunit [Acidothermus cellulolyticus
11B]
Length = 566
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 92/194 (47%), Gaps = 22/194 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG + I E+A + GGE QTLVNP R +P + GIT
Sbjct: 24 VTFVVVDLETTGGAPGTGAITELAAVKVRGGEVLGELQTLVNPGRPIPPFITVLTGITDA 83
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P ++ ++P L + G +L VAHNA FDV FL + Y+ P
Sbjct: 84 MVAP--APPIDAVLPTFLEFAT------GSVL-VAHNA-PFDVGFLRAACAAAGYDWP-E 132
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV----NCLSLIL 299
+ +DT LAR ++ + + +L + P HRA+ADV + L +L
Sbjct: 133 FEVLDTARLARRVLTREEAPNCTLATLARVFRAKTTP----NHRALADVYATIDVLHGLL 188
Query: 300 QRLTFDLKLSLCDL 313
+RL SL D+
Sbjct: 189 ERLGSFGVGSLADV 202
>gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
Length = 1435
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 419 TYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGITDDM 478
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + NN
Sbjct: 479 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLAKTNNP 528
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 529 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 579
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF + +N
Sbjct: 580 -----LKDVIEKGFEYHNQLN 595
>gi|423367558|ref|ZP_17344990.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD142]
gi|401084108|gb|EJP92358.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD142]
Length = 315
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D ETTGF+ N++II++A E F + VNP+R +P+ + GIT V
Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGITNYRVS 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P + +++P+ L ++ + + VAHNA SFD+ FL + + P N +
Sbjct: 71 --DAPTIAEVLPLFLAFLDTN-------IIVAHNA-SFDMRFLKSNVNMLGLPEPKNNV- 119
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
+DT+ LA++ MK ++ L+ L+ GI L ++H A D + + Q+
Sbjct: 120 IDTVFLAKKYMKHAPNH-----KLETLKRMLGIRL--NSHNAFDDCITCAAVYQK 167
>gi|238062933|ref|ZP_04607642.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
gi|237884744|gb|EEP73572.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
Length = 286
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 20/184 (10%)
Query: 119 ENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHV 177
E DL + V +V D+ETTG S ++RI+EIA + GG + TLV+P R V
Sbjct: 28 EGVDLGE-VPFVVVDVETTGLSSTSDRIVEIALVRIEGGRVVDEWATLVDPGRDPDPTFV 86
Query: 178 HGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCS 237
H IT +M+ P D+ +L + + VAHNAR F+ F+ EF+R
Sbjct: 87 HHITAEMLSG--APTFADVAGEILSRLDG-------AVVVAHNAR-FEEGFIAQEFARVG 136
Query: 238 YEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSL 297
+ TL LAR+++ + L S ++ YGI L AH A+ D +
Sbjct: 137 ISTA-PLPAVCTLRLARQVLAAPNFQLVSCCTV------YGIEL-HDAHTALGDTRATAQ 188
Query: 298 ILQR 301
+L R
Sbjct: 189 LLPR 192
>gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010]
gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010]
Length = 488
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
+ ++ D ETTG +R+ EIA ++ G +QTL+NP R +P + GIT
Sbjct: 10 SMVILDCETTGGRASRDRLTEIALIEVEDGHVVKRWQTLLNPLRPIPPWITRLTGITDAT 69
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P +++ L + + + VAHNAR FD FL F RC Y + N
Sbjct: 70 VA--DAPTFDEIADELFACLDGK-------VIVAHNAR-FDYSFLRQSFQRCGYTLGNKT 119
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
L ++ L+R+L S+ L + E G+ + + HRAMAD L + ++
Sbjct: 120 LC--SVKLSRQLFPEHRSH-----GLDRIIERLGL-TIDNRHRAMADTEVLLAFFEHIS 170
>gi|398830724|ref|ZP_10588905.1| DNA polymerase III, epsilon subunit [Phyllobacterium sp. YR531]
gi|398213304|gb|EJM99897.1| DNA polymerase III, epsilon subunit [Phyllobacterium sp. YR531]
Length = 235
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLG--GENSTFQTLVNPKRQVPNAH---VHGITTDM 184
I+FD ETTG R ++RIIEI +L+ TF +NP+ + N VHGI+ +
Sbjct: 4 IIFDTETTGLDRLDDRIIEIGGVELINRFPTGRTFHVFINPEGRTVNPEALAVHGISNEQ 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ P ++ L ++ + +AHNA +FD+ F+ E +R + +N
Sbjct: 64 LVNE--PLFAGILQEFLDFIDGAK-------LIAHNA-TFDMGFINAELNRLGHPPIHND 113
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DTL LAR G + SL AL YGI ++HR M S +L +
Sbjct: 114 RVIDTLALARRKHPMGPN------SLDALCRRYGID---NSHRTMHGALLDSQLLAEVYI 164
Query: 305 DL 306
+L
Sbjct: 165 EL 166
>gi|193213751|ref|YP_001994950.1| hypothetical protein Ctha_0031 [Chloroherpeton thalassium ATCC
35110]
gi|193087228|gb|ACF12503.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC
35110]
Length = 578
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 22/180 (12%)
Query: 127 VTAIVFDIETTGFSRENERIIEI-AFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTD 183
T V D+ETTG + RIIEI A + G E ++LVNP++Q+ + GIT
Sbjct: 22 ATFAVVDLETTGGLKPENRIIEICAIKCRNGQEVGMLESLVNPEQQISYFISQYTGITNS 81
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY-EVPN 242
MV + P ++ L+ + + + +FVAHN FD+ F+ E R Y ++ N
Sbjct: 82 MV--DNAPVIQSLLTKVSEFFQE-------TIFVAHNV-PFDMGFINMELERNGYAKLTN 131
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
WL T LAR L+ + K +L L +Y+GI +V + HRA D +L L
Sbjct: 132 RWLC--TFRLARRLLPT-----QQKKNLGDLAKYFGI-IVENRHRARGDCEATIKLLAEL 183
>gi|451334729|ref|ZP_21905301.1| DNA polymerase III epsilon subunit [Amycolatopsis azurea DSM 43854]
gi|449422722|gb|EMD28091.1| DNA polymerase III epsilon subunit [Amycolatopsis azurea DSM 43854]
Length = 572
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 26/218 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTD 183
+T +VFD+ETTG + I EI + GE F T VNP +P V GIT
Sbjct: 24 ITFVVFDLETTGTKPGPDGITEIGAVKIRAGEIVGEFATFVNPGMPIPPQIVELTGITGA 83
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV D PR++ ++P L ++ + VAHNA FD F+ Y P
Sbjct: 84 MVY--DAPRIDRVLPAFLEFISG-------AVLVAHNA-PFDTGFMRAACEGHGYHWPKT 133
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+ T+ LAR ++ PS L AL +G + HRA+AD V+ L +L
Sbjct: 134 AVVC-TVRLARRVISR--DETPS-YRLSALAALFGARTTPN-HRALADARATVDVLHALL 188
Query: 300 QRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
+R+ +L +L++ + P + P +++K L +
Sbjct: 189 ERVGNLGVHTLEELLD--YLPE--VTPAQRRKRSLAEH 222
>gi|239626437|ref|ZP_04669468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516583|gb|EEQ56449.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 1554
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 28/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +VFDIETTGFS + +IIEI ++ G+ F + VNP +P + GI M
Sbjct: 530 TFVVFDIETTGFSPKKNKIIEIGAVKVVDGKITDRFSSFVNPDVPIPFDIEKLTGINDSM 589
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V P+++ ++P L +V G + VAHNA SFDV F I+ F+ + N
Sbjct: 590 VLP--YPKIDVILPQFLDFV-------GDAVLVAHNA-SFDVGF-ISHFAE-EQGLHFNP 637
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DT+T+AR L+ NL ++ L + + I L + HRA+ D + I
Sbjct: 638 TVLDTVTIARLLL----PNL-NRFKLDTVAKALNISLA-NHHRAVDDAGATAEIFAAFVR 691
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L+ +RG T + +N
Sbjct: 692 MLR-------DRGVTDLEALN 705
>gi|62184729|ref|YP_219514.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3]
gi|424824778|ref|ZP_18249765.1| DNA polymerase III subunit epsilon chain [Chlamydophila abortus
LLG]
gi|62147796|emb|CAH63542.1| putative DNA polymerase III epsilon chain [Chlamydophila abortus
S26/3]
gi|333409877|gb|EGK68864.1| DNA polymerase III subunit epsilon chain [Chlamydophila abortus
LLG]
Length = 249
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 27/177 (15%)
Query: 123 LAKLVTAIVFDIETTGFSRENERIIEIA-----FQDLLGGENSTFQTLVNPKRQVP--NA 175
L K + D E TG + +RIIE A F ++ + +TL+NP R + +
Sbjct: 3 LLKDTVFVCLDCEMTGLDVKKDRIIEFAAIRFTFDSVI----DSMETLINPDRVISAESQ 58
Query: 176 HVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSR 235
+H I+ M+ D PR+ ++ P +KS K G YI V H+ FD+ L E R
Sbjct: 59 RIHHISDAML--KDQPRIAEVFP----KIKSFLKEGDYI--VGHSV-GFDLQVLSQEAER 109
Query: 236 CSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
+ + +DTL LA+E S + SL+AL ++ +P G+ HRAM DV
Sbjct: 110 IGETFLSKYYIIDTLRLAKEYGDSPNN------SLEALAVHFNVPYDGN-HRAMKDV 159
>gi|417552583|ref|ZP_12203653.1| exonuclease [Acinetobacter baumannii Naval-81]
gi|417561775|ref|ZP_12212654.1| exonuclease [Acinetobacter baumannii OIFC137]
gi|421200236|ref|ZP_15657396.1| exonuclease [Acinetobacter baumannii OIFC109]
gi|421453815|ref|ZP_15903166.1| exonuclease [Acinetobacter baumannii IS-123]
gi|421633889|ref|ZP_16074514.1| exonuclease [Acinetobacter baumannii Naval-13]
gi|421803309|ref|ZP_16239236.1| exonuclease [Acinetobacter baumannii WC-A-694]
gi|395524357|gb|EJG12446.1| exonuclease [Acinetobacter baumannii OIFC137]
gi|395563837|gb|EJG25489.1| exonuclease [Acinetobacter baumannii OIFC109]
gi|400213223|gb|EJO44178.1| exonuclease [Acinetobacter baumannii IS-123]
gi|400392842|gb|EJP59888.1| exonuclease [Acinetobacter baumannii Naval-81]
gi|408705531|gb|EKL50867.1| exonuclease [Acinetobacter baumannii Naval-13]
gi|410413295|gb|EKP65127.1| exonuclease [Acinetobacter baumannii WC-A-694]
Length = 211
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 130 IVFDIETTGFSRE-NERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMV 185
IV D ETTG S E +RI E+A ++ GE F +L+N VP + GIT DMV
Sbjct: 7 IVLDFETTGASPEAGDRITEVAALRIVEGEITERFVSLINCGVNVPYYITKLTGITQDMV 66
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
P +E++IP LL ++ + +AHNA FD FL E R +N L
Sbjct: 67 NH--APLVEEVIPSLLDFIGTDP-------LLAHNA-GFDEKFLKAESIRQELTPSHNGL 116
Query: 246 FMDTLTLARELMKSGGSNLPSKVS--LQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+L LAR + LP ++S L A+ + + I G+AHRA AD + + L
Sbjct: 117 IC-SLKLARRI-------LPHQLSYRLGAMADLFNIKFNGTAHRAEADAEVTAQLFNYLC 168
Query: 304 FDL 306
++
Sbjct: 169 MNI 171
>gi|453069251|ref|ZP_21972517.1| hypothetical protein G418_11428 [Rhodococcus qingshengii BKS 20-40]
gi|452764003|gb|EME22277.1| hypothetical protein G418_11428 [Rhodococcus qingshengii BKS 20-40]
Length = 608
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 85/178 (47%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG S + + I EI + GGE TLV+P R +P + GITT M
Sbjct: 62 TFVVVDLETTGGSADQDSITEIGAVKIRGGEVLGEMATLVDPGRSIPPYIVELTGITTAM 121
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ P +E ++P L + + G +L VAHNA FD+ FL SR + P +
Sbjct: 122 LIG--APPIERVLPAFLEFAE------GAVL-VAHNA-PFDIGFLKAAASRSARPWP-AF 170
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ LAR ++ PS V L AL + + HRA+ D +L L
Sbjct: 171 RVLCTVKLARRVLTR--DEAPS-VKLSALAHLFQV-TTQPTHRALDDARATVDVLHGL 224
>gi|374613138|ref|ZP_09685909.1| DNA polymerase III, epsilon subunit [Mycobacterium tusciae JS617]
gi|373546493|gb|EHP73255.1| DNA polymerase III, epsilon subunit [Mycobacterium tusciae JS617]
Length = 339
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 19/172 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLL--GGENSTFQTLVNPKRQVPNAHVHGITTDMVCKP 188
V D+ET+GF + R+I IA L G + TL+NP HVHG+T +M+
Sbjct: 28 VVDVETSGFHPGHARVISIAALALGDDGNVEKSLYTLLNPGVDPGPTHVHGLTAEML--E 85
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
PR D++ L+ ++ R VAHN FD FL E E+P + M
Sbjct: 86 GQPRFGDIVDDLIDLLRGRT-------LVAHNV-GFDYSFLTAEAEMVDAELPID-TAMC 136
Query: 249 TLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
T+ LAR L + G NL L+ L ++GI + H A+ D L+ IL+
Sbjct: 137 TVELARRL-ELGTENL----RLETLAAHWGITQL-KPHDALDDAMVLAQILK 182
>gi|224826335|ref|ZP_03699437.1| DNA polymerase III, epsilon subunit [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601436|gb|EEG07617.1| DNA polymerase III, epsilon subunit [Pseudogulbenkiania
ferrooxidans 2002]
Length = 476
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 20/178 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCKP 188
+ D+ETTG +RI EI + G ++TLVNP + +P ++ GI+ MV
Sbjct: 9 IVDLETTGGHITRDRITEIGILLIDGERIERYETLVNPGQPIPPFIENMTGISDAMVA-- 66
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
+ P L+ LL ++ R L +AHNAR FD FL NEF R + + L
Sbjct: 67 EAPPFAALVETLLEKLQGR-------LLLAHNAR-FDYGFLKNEFKRAGHVFQSEVLC-- 116
Query: 249 TLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
T+ L+R L K SL +L +GI ++ HRAMAD + ++ T +L
Sbjct: 117 TVKLSRRLYPQ-----HFKHSLDSLIARHGI-VLADRHRAMADALAVYHFIEAATAEL 168
>gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
Length = 653
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 19/172 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLL--GGENSTFQTLVNPKRQVPNAHVHGITTDMVCKP 188
+ D+ET+G +RI+ IA G + + TLVNP H+HG+T + +
Sbjct: 21 LVDVETSGLIARRDRILSIAVLTFGPDGTQTGEYSTLVNPGCDPGPVHIHGLTAERLR-- 78
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
D P E + + ++ R + VAHNA+ FD FL +EF+R +P N
Sbjct: 79 DAPAFEQVAGRIGALLQDR-------VMVAHNAQ-FDYDFLAHEFARARLCLPVNQRLC- 129
Query: 249 TLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
TL L R + + +SL +L +YG+P AH A+ D L+ I +
Sbjct: 130 TLALNRRVEPPA-----ADLSLASLAAHYGVPQT-RAHDALDDTRVLAGIFR 175
>gi|229490475|ref|ZP_04384316.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis
SK121]
gi|229322765|gb|EEN88545.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis
SK121]
Length = 608
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 85/178 (47%), Gaps = 18/178 (10%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG S + + I EI + GGE TLV+P R +P + GITT M
Sbjct: 62 TFVVVDLETTGGSADQDSITEIGAVKIRGGEVLGEMATLVDPGRSIPPYIVELTGITTAM 121
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ P +E ++P L + + G +L VAHNA FD+ FL SR + P +
Sbjct: 122 LIG--APPIERVLPAFLEFAE------GAVL-VAHNA-PFDIGFLKAAASRSARPWP-AF 170
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ LAR ++ PS V L AL + + HRA+ D +L L
Sbjct: 171 RVLCTVKLARRVLTR--DEAPS-VKLSALAHLFQV-TTQPTHRALDDARATVDVLHGL 224
>gi|350569712|ref|ZP_08938108.1| hypothetical protein HMPREF9153_2193 [Propionibacterium avidum ATCC
25577]
gi|348660530|gb|EGY77240.1| hypothetical protein HMPREF9153_2193 [Propionibacterium avidum ATCC
25577]
Length = 641
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 116/258 (44%), Gaps = 42/258 (16%)
Query: 84 KNIKFEATSTTINVNKTEISKIQRIQHYDIEQIIAENKDLAKLVTAI------------- 130
+N A ++I+V T ++++ I ++ I+++ +++A
Sbjct: 12 ENAHTSARPSSISVRATALTRLFSIGLAHVQHILSQGVSTVPIMSAAPLQPSFDDLGTPL 71
Query: 131 ------VFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVHGIT-- 181
V D+ETTG + +N +I EI + GG FQTLV P +P A V +T
Sbjct: 72 PDVTFCVVDLETTG-TGDNAQITEIGAVKVCGGHVEGEFQTLVRPSEPIP-ASVQVLTGI 129
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
TD + +P P ++ ++P + + + VAHNAR FDV FL ++ Y
Sbjct: 130 TDTMVRP-APPLDAVLPSWSEFSRG-------TVLVAHNAR-FDVGFLKRAYAEHDYSWE 180
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSL 297
N +DTL LAR ++ +L L P +HRA+AD V+ L
Sbjct: 181 NP-AVVDTLALARSVLPRDEVRNYRLGTLSQLFRTTTTP----SHRALADARATVDVLHG 235
Query: 298 ILQRLTFDLKLSLCDLIE 315
+++R+ +L DL+E
Sbjct: 236 LIERVGNLGVTTLEDLLE 253
>gi|404370940|ref|ZP_10976255.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
gi|226912938|gb|EEH98139.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
Length = 1442
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 21/175 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T IVFDIETTGFS +N++IIEI + G E TF V PK ++P + GIT ++
Sbjct: 428 TFIVFDIETTGFSAKNDKIIEIGAVKIKGREVIDTFSEFVYPKCRIPYKITELTGITDEI 487
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D +E ++P + ++ VAHNA +FD F+ + E N
Sbjct: 488 V--QDADPIEVVLPKFIEFIDG-------CAVVAHNA-AFDTGFIKKNCNDLGLEF--NS 535
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
+DT+ LAR L +V L + ++ G+ L + HRA+ D + I
Sbjct: 536 TIVDTVPLARFLYPE-----LKRVKLNLVAKHLGVSL-ENHHRAVDDAKATAEIF 584
>gi|31747869|gb|AAN10194.1| DNA polymerase III epsilon subunit [Candidatus Fritschea bemisiae]
Length = 249
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 33/173 (19%)
Query: 130 IVFDIETTGFSRENERIIEIA-----FQDLLGGENSTFQTLVNPKRQVPN--AHVHGITT 182
+ FD E+TG E +RIIEIA F ++ + + L+NP+ +P +H IT
Sbjct: 10 VCFDCESTGLDPEKDRIIEIAAIKFSFNAII----DSIEDLINPETLIPQETTRIHHITD 65
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
+MV K P++ ++I L ++ G + V H FD+ L E R VP+
Sbjct: 66 EMVQKS--PKINEVIQSYLDFI-------GESIVVGHGI-PFDLALLEAEAKRAG--VPS 113
Query: 243 NWL---FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
L ++DTL LAR L +N SL++LR+++ I + +AHRAM+DV
Sbjct: 114 RLLNQRYLDTLRLAR-LYGESPTN-----SLESLRKHFNIQGI-NAHRAMSDV 159
>gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147]
Length = 405
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 84/179 (46%), Gaps = 23/179 (12%)
Query: 128 TAIVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDM 184
T + F D+ETTG S RI EI + ST+ TLVNP++ +P + GIT DM
Sbjct: 13 TPLAFVDLETTGGSAVEHRITEIGVVVVSADHVSTWTTLVNPRQAIPPFIQQLTGITDDM 72
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V P D+ L + + LFVAHNA SFD FL EF R + N
Sbjct: 73 VRG--APTFADVASALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAGFAF--NP 120
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLILQRL 302
+ T+ L+R L S+ L AL + L SA HRA+AD + + Q+L
Sbjct: 121 DVLCTVRLSRVLFPR-----ESRHGLDALIARHA--LTPSARHRALADADLIWQFWQKL 172
>gi|291519550|emb|CBK74771.1| DNA polymerase III catalytic subunit, PolC type [Butyrivibrio
fibrisolvens 16/4]
Length = 1480
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 25/183 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGF+ +N +IIEI GE F +NP+ +P + IT DMV
Sbjct: 449 VVFDIETTGFNPKNNKIIEIGAVKFKDGEIVDHFSEFINPEVPIPYRITELTSITDDMVL 508
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P ++ ++P + + K + VAHNA FD F+ + E ++
Sbjct: 509 --DAPTIDVILPKFMEFCKG-------TVLVAHNA-GFDTSFIRYNCKQLGLEY--DYTH 556
Query: 247 MDTLTLARELMKSGGS-NLPSKVSLQ-ALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DT+ +AR L + NL + L+ + E++ HRA+AD + I ++
Sbjct: 557 VDTVEVARYLHPNNARFNLDAVCKLENVVNEHH--------HRAVADAEVTAKIFEKFIV 608
Query: 305 DLK 307
L+
Sbjct: 609 KLE 611
>gi|347541032|ref|YP_004848458.1| DNA polymerase III subunit epsilon [Pseudogulbenkiania sp. NH8B]
gi|345644211|dbj|BAK78044.1| DNA polymerase III, epsilon subunit [Pseudogulbenkiania sp. NH8B]
Length = 476
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 20/178 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCKP 188
+ D+ETTG +RI EI + G ++TLVNP + +P ++ GI+ MV
Sbjct: 9 IVDLETTGGHITRDRITEIGILLIDGERIERYETLVNPGQPIPPFIENMTGISDAMVA-- 66
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
+ P L+ LL ++ R L +AHNAR FD FL NEF R + + L
Sbjct: 67 EAPPFAALVETLLEKLQGR-------LLLAHNAR-FDYGFLKNEFKRAGHVFQSEVLC-- 116
Query: 249 TLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
T+ L+R L K SL +L +GI ++ HRAMAD + ++ T +L
Sbjct: 117 TVKLSRRLYPQ-----HFKHSLDSLIARHGI-VLADRHRAMADALAVYHFIEAATAEL 168
>gi|448824608|ref|YP_007415868.1| putative exonuclease, RNase T and DNA polymerase III
[Corynebacterium urealyticum DSM 7111]
gi|448278105|gb|AGE37529.1| putative exonuclease, RNase T and DNA polymerase III
[Corynebacterium urealyticum DSM 7111]
Length = 633
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 31/178 (17%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGENS---TFQTLVNPKRQVPNAHVHGIT-TDMVC 186
V D+ETTG S ++ RI+EI LL + S T++TL+ P+R +PN+++H +T TD+V
Sbjct: 9 VVDLETTGLSNQD-RIVEIGVV-LLRPDFSVERTWETLIQPERDIPNSYIHKVTATDVV- 65
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL- 245
D P D+ L + R VAHNA SF+ FL NEF+R E N L
Sbjct: 66 --DAPLFCDVARHLGSLLNGRT-------LVAHNA-SFEHRFLTNEFARAGAE---NGLC 112
Query: 246 -FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
++DT+ L ++ + G + L + + + S H A+AD + +L+ L
Sbjct: 113 EWLDTMRLTKQYL--GVAKLSEALDIAKISNR-------SVHSALADAEATAELLRYL 161
>gi|390567572|ref|ZP_10247900.1| DNA polymerase III subunit epsilon [Burkholderia terrae BS001]
gi|389940473|gb|EIN02274.1| DNA polymerase III subunit epsilon [Burkholderia terrae BS001]
Length = 392
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 85/176 (48%), Gaps = 21/176 (11%)
Query: 130 IVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVF D+ETTG S + RI EI +L ST+ TLV+P + +P + GIT MV
Sbjct: 15 IVFVDLETTGGSVGDHRITEIGVVELGPDGASTWTTLVDPGQPIPPFIQQLTGITNAMVR 74
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P E + L + + LF+AHNA +FD FL +EF R + + L
Sbjct: 75 G--APTFESIAADLFARLDGK-------LFIAHNA-NFDRGFLRSEFQRVGFTFNPDMLC 124
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
T+ L+R L + + L AL E + + + HRA+AD + L QRL
Sbjct: 125 --TVRLSRALFPA-----EKRHGLDALVERHAL-VPSDRHRALADADLLWQFWQRL 172
>gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
Length = 395
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 90/192 (46%), Gaps = 25/192 (13%)
Query: 114 EQIIAENKDLAKLVTAIVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQV 172
EQ ++E L IVF D+ETTG S RI E+ ++ S + +LV+P++ +
Sbjct: 15 EQFLSEPA----LDGPIVFVDLETTGGSTAEHRITEVGVVEVGPAGVSRWSSLVDPQQPI 70
Query: 173 PN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLI 230
P+ + GIT MV P E + P L + + LFVAHNA SFD FL
Sbjct: 71 PSFIQQLTGITNAMVR--GAPTFEAIAPALFERLNGK-------LFVAHNA-SFDRGFLR 120
Query: 231 NEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMA 290
EF R + + T+ L+R L + + L AL E + + + HRA+A
Sbjct: 121 GEFRRAGLAFDPD--VLCTVRLSRALFPA-----EKRHGLDALVERHTL-VPSDRHRALA 172
Query: 291 DVNCLSLILQRL 302
D + + QRL
Sbjct: 173 DADLIWQFWQRL 184
>gi|420247887|ref|ZP_14751271.1| exonuclease, DNA polymerase III, epsilon subunit family
[Burkholderia sp. BT03]
gi|398069942|gb|EJL61268.1| exonuclease, DNA polymerase III, epsilon subunit family
[Burkholderia sp. BT03]
Length = 392
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 85/176 (48%), Gaps = 21/176 (11%)
Query: 130 IVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVF D+ETTG S + RI EI +L ST+ TLV+P + +P + GIT MV
Sbjct: 15 IVFVDLETTGGSVGDHRITEIGVVELGPDGASTWTTLVDPGQPIPPFIQQLTGITNAMVR 74
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P E + L + + LF+AHNA +FD FL +EF R + + L
Sbjct: 75 G--APTFESIAADLFARLDGK-------LFIAHNA-NFDRGFLRSEFQRVGFTFNPDMLC 124
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
T+ L+R L + + L AL E + + + HRA+AD + L QRL
Sbjct: 125 --TVRLSRALFPA-----EKRHGLDALVERHAL-VPSDRHRALADADLLWQFWQRL 172
>gi|319937397|ref|ZP_08011804.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
gi|319807763|gb|EFW04356.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
Length = 1438
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 117/264 (44%), Gaps = 40/264 (15%)
Query: 62 WSRRRITTGTEGSKKTIQSHKLKNIKFEATSTTINVNKTEISKIQRIQHYDIE---QIIA 118
W + I G+ ++ ++ +IK +I I ++ Y I+ ++
Sbjct: 338 WGHQAIAITDHGNVQSFPEAQMASIK------------NKIKMIYGVEMYMIDPEFTVVF 385
Query: 119 ENKDLA-KLVTAIVFDIETTGFSRENERIIEIAFQDLLGG-ENSTFQTLVNPKRQVPN-- 174
KD++ K +T I FD+ETTG S ++ I E + G E Q+L+ P +++
Sbjct: 386 NEKDISLKDLTFISFDLETTGLSVMDDDITEFGAVKIKNGQEIGRLQSLIKPNKRISQKI 445
Query: 175 AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFS 234
++ IT + V D P +++ IP +L + G + VAHNA +FDV FL
Sbjct: 446 TNLTHITNEDV--KDAPTIQEYIPKILEFF-------GDDVIVAHNA-TFDVGFLNEILQ 495
Query: 235 RCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVN 293
R YE N +D+L LA +L+ L + YY I G AHRA D
Sbjct: 496 RHGYEKLKNPA-IDSLALAWKLLPQ-----LKGFRLGNVARYYRIAYDGDDAHRADYDAE 549
Query: 294 CLSLILQRLTFDL----KLSLCDL 313
L+ + + D+ + SL D+
Sbjct: 550 VLAGVFNMMLHDMMQNQQYSLLDM 573
>gi|210608497|ref|ZP_03287873.1| hypothetical protein CLONEX_00052, partial [Clostridium nexile DSM
1787]
gi|210152988|gb|EEA83994.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
Length = 1269
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 17/181 (9%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVHGITTDMVC 186
T +VFDIETTGFS + IIEI + G+ + T VNP+ +P + D
Sbjct: 455 TYVVFDIETTGFSAVEDHIIEIGAVKVENGKITDKYSTFVNPEVPIPFEITQLTSIDDSM 514
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P+++ ++P L +V G VAHNA FDV F+ E + + + ++
Sbjct: 515 VMDAPKIDVILPQFLEFV-------GDASLVAHNA-GFDVGFI--EQNCKNLNIEQEFVS 564
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+DT+ LAR L+ + SK L + + I L + HRA+ D + I + L
Sbjct: 565 VDTVALARVLLPT-----LSKYKLNIVAKALNISL-ENHHRAVDDAGATAEIFVKFVEML 618
Query: 307 K 307
K
Sbjct: 619 K 619
>gi|340360259|ref|ZP_08682729.1| hypothetical protein HMPREF9062_1854 [Actinomyces sp. oral taxon
448 str. F0400]
gi|339883460|gb|EGQ73303.1| hypothetical protein HMPREF9062_1854 [Actinomyces sp. oral taxon
448 str. F0400]
Length = 543
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 96/218 (44%), Gaps = 28/218 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+V D+ETTG + I EI + GG F TLV+P R +P + GIT MV
Sbjct: 11 VVVDLETTGGAAGAHAITEIGAVRVRGGTVEEEFSTLVDPGRAIPAQITVLTGITNAMVA 70
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW-- 244
P + + + L + + + + VAHNAR FDV R S E+ W
Sbjct: 71 G--APSVGEALVSFLEWARWSEA---DTVLVAHNAR-FDV----GHLRRASRELALPWRE 120
Query: 245 -LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR G S++P+ L L + G P HRA+ D V+ L L
Sbjct: 121 PTVLDTLALARRTW--GRSDVPNH-RLGTLASFVGSP-TRPTHRALDDARATVDVLHAAL 176
Query: 300 QRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
Q L L DL T +D + +++ KS++
Sbjct: 177 QVLAPQGVTHLEDLA----TATDPVPARRRIKSRMADG 210
>gi|121998681|ref|YP_001003468.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1]
gi|121590086|gb|ABM62666.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1]
Length = 707
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 105/217 (48%), Gaps = 33/217 (15%)
Query: 120 NKDLAKLVTAIVFDIETTGFS-RENERIIEIAFQDLLGG---ENSTFQTLVNPKRQVPNA 175
++ LA+L + ++FD ETTG + E + II IA ++ G E F+ LVNP R +P A
Sbjct: 506 DRPLAQL-SFVIFDTETTGLAPSEGDEIISIAGVRMVNGRILEGECFEQLVNPGRPIPKA 564
Query: 176 HV--HGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEF 233
+ HGI +MV D P + ++P +V G + VAHNA +FD+ F+ +
Sbjct: 565 SIKFHGIRDEMVA--DKPGIATVLPQFSAFV-------GDSVLVAHNA-AFDMKFIRLKE 614
Query: 234 SRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN 293
+C + N +DTL L+ L + P +L+A+ G+ + G H A+ D
Sbjct: 615 GQCGLKFENP--VLDTLLLSVFLH----DHTPEH-TLEAIANRLGVEISGR-HTALGDTL 666
Query: 294 CLSLILQRLTFDLKLSLCDLIERGFTP-SDLINPKKK 329
I ++ L L ERG T D IN ++
Sbjct: 667 VTGEIFAQM-------LPLLEERGVTTLRDAINASEQ 696
>gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces
hygroscopicus ATCC 53653]
gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces
himastatinicus ATCC 53653]
Length = 335
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 20/168 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQ-DLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPD 189
V D+ETTG +R++ + +Q D G + TLVNP+R +HG+T + + D
Sbjct: 28 VVDVETTGLARDDRIVSAAVYQLDARGAVQDRWYTLVNPQRDPGPVWIHGLTRETLS--D 85
Query: 190 VPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDT 249
P D+ + R + VAHNA +FD + EF+R E P T
Sbjct: 86 APLFPDIATAFAERLDGR-------VLVAHNA-AFDWSMIAREFARSKTEAPVRQRLC-T 136
Query: 250 LTLARELMKSGGSNLP-SKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
+ L++EL LP + L+ L +YG+ + AH A+ D L+
Sbjct: 137 IALSKEL------GLPLANHKLETLAAHYGV-VQERAHHALDDARVLA 177
>gi|160893350|ref|ZP_02074137.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
gi|156865042|gb|EDO58473.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. L2-50]
Length = 1514
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 32/201 (15%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNA--HVHGITTDMVC 186
IVFDIETTG S++ +IIEI + GE F +NP+ +P + + IT +MV
Sbjct: 459 IVFDIETTGLSQKKNKIIEIGAVKVKDGEEIDRFSEFINPEEPIPYSIEQLTSITDEMVM 518
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P ++ ++P L + G + VAHNA +FD F+ + N
Sbjct: 519 H--APTVDVILPKFLEFC-------GDDIVVAHNA-AFDTGFIKKNAKDLGMKFDNT--I 566
Query: 247 MDTLTLARELMKSGGSNLPSKV--SLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
MDT+TL+ L+ G +V +L E++ HRA+ D N + I +L +
Sbjct: 567 MDTMTLSHVLLPELGKFTLDRVCKALNVKNEHH--------HRAVDDANATAKIFVKL-Y 617
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
++ L+ERG + +N
Sbjct: 618 EM------LVERGVKTVEDVN 632
>gi|302869008|ref|YP_003837645.1| DNA polymerase III subunit epsilon [Micromonospora aurantiaca ATCC
27029]
gi|302571867|gb|ADL48069.1| DNA polymerase III, epsilon subunit [Micromonospora aurantiaca ATCC
27029]
Length = 584
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 91/213 (42%), Gaps = 18/213 (8%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG + + I EI + GGE TLVNP +P + GIT M
Sbjct: 31 TFVVVDLETTGGAPDGGGITEIGAVKVRGGEELGVLATLVNPGVPIPPFITVLTGITQAM 90
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ P +E ++P L +V + VAHNA +DV FL ++ Y PN
Sbjct: 91 LLP--APPIEQVLPSFLEFVSD-------AVLVAHNA-PYDVGFLKAACAKHGYRWPNPR 140
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DT LAR ++ +P++ L L Y+ HRA+ D +L L
Sbjct: 141 V-LDTAALARRVLTR--DEVPNR-KLGTLAAYFRT-ATQPTHRALDDAKATVDVLHGLIG 195
Query: 305 DLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L + + + P +++K L
Sbjct: 196 RLGGHRVGTVGEAIEFARAVTPTQRRKRHLADG 228
>gi|168334980|ref|ZP_02693097.1| DNA polymerase III, alpha subunit [Epulopiscium sp. 'N.t.
morphotype B']
Length = 1454
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 29/180 (16%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
++FD+ETTG S + +IIEI + G+ TF + VNP+ +P + GITT +
Sbjct: 437 VIFDLETTGLSSSSNKIIEIGAVKIRNGKIIDTFSSFVNPETDIPEHITELTGITTTDIA 496
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P + ++P + + S + VAHNA FD+ F+++ + E N +
Sbjct: 497 --DAPTIAAVLPQFVEFCASA-------ILVAHNA-DFDMGFILHNTRDLAIEF--NKTY 544
Query: 247 MDTLTLARELMKSGG----SNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DT+++AR L+ + G SN+ +K+ + +L+ + HRA+ D + + I +
Sbjct: 545 IDTVSMARILLPNLGNAKLSNIANKLKV-SLKNH---------HRAVDDASATAEIFLKF 594
>gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386]
gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC
33386]
Length = 1421
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 25/178 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGEN--STFQTLVNPKRQVPNAHVH--GITTDMV 185
I+FDIETTGF ++IIEI L G N F VNP+ +P + IT DMV
Sbjct: 400 IIFDIETTGFDPYKDKIIEIGAVK-LKGRNIIDRFSAFVNPEVPIPEEIIKLTNITDDMV 458
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE-VPNNW 244
D ++ ++P L + G VAHNA+ FDV FL + + E +P+
Sbjct: 459 --KDAELIDTVLPRFLEFC-------GDCTMVAHNAK-FDVGFLTQKARQLELEFLPS-- 506
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL AR L+ + +L+AL Y+ I L + HRA+ D + I ++
Sbjct: 507 -VIDTLYWARVLITD-----LKRFNLKALANYFNISL-DNHHRAVDDAEATASIFIKM 557
>gi|71907536|ref|YP_285123.1| DNA polymerase III subunit epsilon [Dechloromonas aromatica RCB]
gi|71847157|gb|AAZ46653.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
Length = 453
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 23/184 (12%)
Query: 133 DIETTGFSRENERIIEIAFQDL-LGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCKPD 189
D+ETTG + ++RI EI ++ G +Q LVNP ++P + GI+ +MV D
Sbjct: 8 DLETTGATATHDRITEIGIVEVDADGSVREWQQLVNPGMRIPPFIEQLTGISDEMVA--D 65
Query: 190 VPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDT 249
P E + ++ ++ R LF+AHNAR FD FL NEF R V + T
Sbjct: 66 APPFEAIAGEVMKRLEGR-------LFIAHNAR-FDYGFLKNEFKRLG--VTFRAAVLCT 115
Query: 250 LTLARELM-KSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLKL 308
+ L+R L + NL S + LR + HRA+AD + Q++ + L
Sbjct: 116 VKLSRTLFPEHKRHNLDSLIERHELR-------AEARHRALADAQLIHQFWQKIHLERSL 168
Query: 309 SLCD 312
D
Sbjct: 169 EAID 172
>gi|167570838|ref|ZP_02363712.1| possible DNA polymerase/helicase [Burkholderia oklahomensis C6786]
Length = 408
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 81/173 (46%), Gaps = 22/173 (12%)
Query: 133 DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDV 190
D+ETTG S RI EI + ST+ TLVNP++ +P + GIT DMV
Sbjct: 19 DLETTGGSAVEHRITEIGVVVVSADHVSTWTTLVNPRQAIPPFIQQLTGITDDMVRG--A 76
Query: 191 PRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTL 250
P D+ L + + LFVAHNA SFD FL EF R + N + T+
Sbjct: 77 PTFADVASALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAGFAF--NPDVLCTV 126
Query: 251 TLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLILQRL 302
L+R L S+ L AL + L SA HRA+AD + + Q+L
Sbjct: 127 RLSRVLFPR-----ESRHGLDALIARHA--LTPSARHRALADADLIWQFWQKL 172
>gi|417746555|ref|ZP_12395051.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium avium subsp. paratuberculosis S397]
gi|440777544|ref|ZP_20956344.1| hypothetical protein D522_12244 [Mycobacterium avium subsp.
paratuberculosis S5]
gi|336461914|gb|EGO40767.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium avium subsp. paratuberculosis S397]
gi|436722202|gb|ELP46201.1| hypothetical protein D522_12244 [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 648
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 29/223 (13%)
Query: 128 TAIVFDIETTGFSREN------ERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVH 178
T +V D+ETTG + + I EI + GG F TLV+P+R +P +
Sbjct: 44 TFVVVDLETTGGRSTSTEETAPDAITEIGAVKVRGGVVLGEFATLVDPQRSIPPQIMRLT 103
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GITT MV D P ++ ++P+ L + + G +L VAHNA FDV FL +C
Sbjct: 104 GITTAMVS--DAPAIDAVLPMFLEFAGLDR---GAVL-VAHNA-GFDVGFLRAAAQQCDI 156
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNC 294
P + T+ LAR ++ PS V L +L + + HRA+ D V+
Sbjct: 157 AWPRPRVLC-TVRLARRVLSR--EEAPS-VRLASLARLFAV-TTQPTHRALDDARATVDV 211
Query: 295 LSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L +++R+ + DL RG+ P + P +++K L
Sbjct: 212 LHALIERVGNQGVHTYADL--RGYLPD--VTPTQRRKRVLAEG 250
>gi|89898728|ref|YP_515838.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56]
gi|89332100|dbj|BAE81693.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56]
Length = 249
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 123 LAKLVTAIVFDIETTGFSRENERIIEIAFQDL-LGGENSTFQTLVNPKRQVP--NAHVHG 179
L K + D E TG + +RIIE A + + +TL+NP R + + +H
Sbjct: 3 LLKDTIFVCLDCEMTGLDVKKDRIIEFAAKRFTFDNVIDSMETLINPDRVISAESQRIHR 62
Query: 180 ITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
I+ M+ D PR+ ++ P + ++K G YI V H+ FD+ L E R
Sbjct: 63 ISDAML--KDQPRISEVFPKIQAFLKE----GDYI--VGHSV-GFDLQVLTQEAERIGET 113
Query: 240 VPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
+ + +DTL LA+E S + SL+AL ++ +P G+ HRAM DV
Sbjct: 114 FLSKYCIIDTLRLAKEYGDSPNN------SLEALAVHFNVPYDGN-HRAMKDV 159
>gi|410863476|ref|YP_006978710.1| DNA polymerase III subunit epsilon [Alteromonas macleodii AltDE1]
gi|410820738|gb|AFV87355.1| DNA polymerase III subunit epsilon [Alteromonas macleodii AltDE1]
Length = 715
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 109/215 (50%), Gaps = 27/215 (12%)
Query: 97 VNKTEISKIQRIQH--YDIE-QIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQD 153
+ + ++ IQR+Q +D+ + +D A+ +V DIETTG + RI EI
Sbjct: 510 LRRNQLVSIQRLQQAGFDVAVTTVNWVRDPAQ--PYVVVDIETTGGNNSYNRITEIGMVK 567
Query: 154 LLGG-ENSTFQTLVNPKRQVPNA--HVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKP 210
L+GG E FQTL+NP+R++P++ + I+ DMV D P ++ + + +
Sbjct: 568 LVGGKEVDRFQTLLNPQRRIPSSITRLTDISDDMVA--DAPLFAEVADHIASFTED---- 621
Query: 211 GGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSL 270
+FVAHN +FD F+ EF+R E P M T+ RE+ ++ S SL
Sbjct: 622 ---AVFVAHNV-NFDYGFIKQEFARL--EQPFRRPKMCTV---REMRRTHPG--LSSYSL 670
Query: 271 QALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
L +++ I + HRA++D + +L +L F+
Sbjct: 671 ANLTKHFHIDM-EQHHRALSDAKAAAELL-KLAFE 703
>gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70]
gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70]
Length = 1435
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 95/207 (45%), Gaps = 27/207 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKR--QVPNAHVHGITTDM 184
T +VFD+ETTG S IIE+A + GE F + NP + + GIT DM
Sbjct: 419 TYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFTSFANPHHPLSITTIELTGITDDM 478
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P +E+++ ++ G + VAHNA SFD+ FL F++ N
Sbjct: 479 L--KDAPDVEEVLRQFYDWM-------GDSILVAHNA-SFDIGFLNVGFTKLGLGKVTNP 528
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + + I L HRA+ D +L RL
Sbjct: 529 V-IDTLELARFLYPELKNH-----RLNTLCKKFDIELT-QHHRAIYDAEATGYLLMRL-- 579
Query: 305 DLKLSLCDLIERGFTPSDLINPKKKKK 331
L D ERG D +N + K++
Sbjct: 580 -----LKDAQERGILYHDELNERSKEE 601
>gi|452956071|gb|EME61464.1| hypothetical protein H074_09845 [Amycolatopsis decaplanina DSM
44594]
Length = 573
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG + I EI + GE F T VNP +P V GIT M
Sbjct: 25 TFVVFDLETTGTKPGPDGITEIGAVKIRAGEVVGEFATFVNPGMPIPPQIVELTGITGAM 84
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D PR+E ++P L ++ + VAHNA +FD F+ Y P
Sbjct: 85 VY--DAPRIERVLPAFLEFISG-------AVLVAHNA-AFDTGFMRAACEGHGYHWPKTA 134
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLILQ 300
+ T+ LAR ++ PS L AL +G + HRA+AD V+ L +L+
Sbjct: 135 VVC-TVRLARRVISR--DETPS-YRLSALAALFGARTTPN-HRALADARATVDVLHALLE 189
Query: 301 RL 302
R+
Sbjct: 190 RV 191
>gi|260906794|ref|ZP_05915116.1| hypothetical protein BlinB_15797 [Brevibacterium linens BL2]
Length = 581
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 19/180 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN---AHVHGITT 182
VT ++ D+ETTG + I EI GGE FQ+LV P+ V + A + GIT
Sbjct: 29 VTFVIVDLETTGTTAGKSEITEIGAVKTRGGEVLGEFQSLVKPEESVISPFVARLTGITH 88
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
MV D P + ++P L + G +L VAHNA FD+ F+ + + Y P
Sbjct: 89 AMV--DDAPSIRSVLPSFLEFCV------GAVL-VAHNA-PFDIGFIRSACEKLDYHWPQ 138
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DT+TL+R ++ + L L ++G V HRA++D +L R+
Sbjct: 139 P-TVLDTVTLSRRVVS---RDEVRNHKLSTLAAHFGTE-VSPDHRALSDAKATGEVLHRV 193
>gi|41408028|ref|NP_960864.1| hypothetical protein MAP1930 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41396383|gb|AAS04247.1| hypothetical protein MAP_1930 [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 643
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 29/223 (13%)
Query: 128 TAIVFDIETTGFSREN------ERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVH 178
T +V D+ETTG + + I EI + GG F TLV+P+R +P +
Sbjct: 39 TFVVVDLETTGGRSTSTEETAPDAITEIGAVKVRGGVVLGEFATLVDPQRSIPPQIMRLT 98
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GITT MV D P ++ ++P+ L + + G +L VAHNA FDV FL +C
Sbjct: 99 GITTAMVS--DAPAIDAVLPMFLEFAGLDR---GAVL-VAHNA-GFDVGFLRAAAQQCDI 151
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNC 294
P + T+ LAR ++ PS V L +L + + HRA+ D V+
Sbjct: 152 AWPRPRVLC-TVRLARRVLSR--EEAPS-VRLASLARLFAV-TTQPTHRALDDARATVDV 206
Query: 295 LSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L +++R+ + DL RG+ P + P +++K L
Sbjct: 207 LHALIERVGNQGVHTYADL--RGYLPD--VTPTQRRKRVLAEG 245
>gi|357020105|ref|ZP_09082340.1| DNA polymerase III subunit epsilon [Mycobacterium thermoresistibile
ATCC 19527]
gi|356480141|gb|EHI13274.1| DNA polymerase III subunit epsilon [Mycobacterium thermoresistibile
ATCC 19527]
Length = 309
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 23/171 (13%)
Query: 134 IETTGFSRENERIIEIAFQDLLGGENSTFQ----TLVNPKRQVPNAHVHGITTDMVCKPD 189
+ETTGF RI+ IA L G++ + TL+NP H+HG+T DM+
Sbjct: 1 METTGFRPGQARIVSIAA--LAVGDDGNVERSVATLLNPGVDPGPTHIHGLTADMLAGQ- 57
Query: 190 VPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDT 249
P+ D++ L+ ++ R VAHN +FD FL+ E E+P + + M T
Sbjct: 58 -PQFADIVDDLIDILRGRT-------LVAHNV-AFDYAFLVAEAELIDAELPIDSV-MCT 107
Query: 250 LTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
+ LAR M+ G NL L+ L ++G+ + AH A+ D L+ IL+
Sbjct: 108 IELARR-MQLGTENL----RLETLAAHWGVTQL-RAHDALDDALVLTQILK 152
>gi|229918664|ref|YP_002887310.1| DNA polymerase III subunit alpha [Exiguobacterium sp. AT1b]
gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
Length = 1430
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 22/180 (12%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTD 183
T +VFD+ETTG S +IIE+A + GE F+ +PK + + GIT D
Sbjct: 408 ATYVVFDVETTGLSAVYNKIIELAGVKIKDGEIIDRFEAFADPKHALSATTIELTGITDD 467
Query: 184 MV-CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
MV +PD P + I +V G + VAHNA SFD+ FL +E P+
Sbjct: 468 MVQGQPD-PEV-----ITKRFVDW----CGDSILVAHNA-SFDMGFLEATLRSGGHE-PD 515
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
++ +DTL LAR LM + ++ L L + + I L HRA+ D + +L +L
Sbjct: 516 DYPVIDTLELARTLMPTLKNH-----RLNTLAKRFDIELT-QHHRAIYDAEATAYLLMKL 569
>gi|443672721|ref|ZP_21137801.1| putative DNA polymerase III epsilon subunit [Rhodococcus sp.
AW25M09]
gi|443414567|emb|CCQ16139.1| putative DNA polymerase III epsilon subunit [Rhodococcus sp.
AW25M09]
Length = 582
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 18/213 (8%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG S + E I EI + GGE F TLV+P R +P + GIT+ M
Sbjct: 20 TFVVVDLETTGGSADTEAITEIGAVKVRGGEILGEFATLVDPGRSIPPYIVELTGITSAM 79
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ PR+E ++P L + + G +L VAHNA FD FL SR P +
Sbjct: 80 LIG--APRIERVLPGFLEFAR------GSVL-VAHNA-GFDTGFLKAAASRLDIAWP-RF 128
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ T+ LAR ++ + ++L L P + A A V+ L +++R+
Sbjct: 129 QVLCTVKLARRVLTRDEAPSVKLLALSTLFRSGTRPTHRALDDARATVDVLHGLIERVGN 188
Query: 305 DLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
S +L++ + P+ ++ ++ K L ++
Sbjct: 189 QGVHSYAELVD--YLPA--VSAGQRAKRGLAAH 217
>gi|329942403|ref|ZP_08291213.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydophila psittaci Cal10]
gi|332287044|ref|YP_004421945.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|384450183|ref|YP_005662783.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|384451191|ref|YP_005663789.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 01DC11]
gi|384452167|ref|YP_005664764.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 08DC60]
gi|384453141|ref|YP_005665737.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci C19/98]
gi|384454119|ref|YP_005666714.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 02DC15]
gi|392376297|ref|YP_004064075.1| putative DNA polymerase III epsilon chain [Chlamydophila psittaci
RD1]
gi|406593012|ref|YP_006740191.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci NJ1]
gi|406594042|ref|YP_006741235.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci MN]
gi|407453571|ref|YP_006732679.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci 84/55]
gi|407454905|ref|YP_006733796.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci GR9]
gi|407456269|ref|YP_006734842.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci VS225]
gi|407457638|ref|YP_006735943.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci WS/RT/E30]
gi|407458884|ref|YP_006736987.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci M56]
gi|407460256|ref|YP_006738031.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci WC]
gi|410858072|ref|YP_006974012.1| putative DNA polymerase III epsilon chain [Chlamydia psittaci
01DC12]
gi|449070728|ref|YP_007437808.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci Mat116]
gi|313847640|emb|CBY16628.1| putative DNA polymerase III epsilon chain [Chlamydophila psittaci
RD1]
gi|325507354|gb|ADZ18992.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|328815313|gb|EGF85301.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydophila psittaci Cal10]
gi|328914277|gb|AEB55110.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC]
gi|334691922|gb|AEG85141.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci C19/98]
gi|334692901|gb|AEG86119.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 01DC11]
gi|334693876|gb|AEG87093.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 02DC15]
gi|334694856|gb|AEG88072.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 08DC60]
gi|405780330|gb|AFS19080.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci 84/55]
gi|405781448|gb|AFS20197.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci GR9]
gi|405782474|gb|AFS21222.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci MN]
gi|405783530|gb|AFS22277.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci VS225]
gi|405784818|gb|AFS23564.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci WS/RT/E30]
gi|405786202|gb|AFS24947.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci M56]
gi|405787407|gb|AFS26151.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci WC]
gi|405788884|gb|AFS27626.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci NJ1]
gi|410810967|emb|CCO01610.1| putative DNA polymerase III epsilon chain [Chlamydia psittaci
01DC12]
gi|449039236|gb|AGE74660.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci Mat116]
Length = 249
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 27/177 (15%)
Query: 123 LAKLVTAIVFDIETTGFSRENERIIEIA-----FQDLLGGENSTFQTLVNPKRQVP--NA 175
L K + D E TG + +RIIE A F ++ + +TL+NP R + +
Sbjct: 3 LLKDTVFVCLDCEMTGLDVKKDRIIEFAAIRFTFDRVI----DSMETLINPDRVISAESQ 58
Query: 176 HVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSR 235
+H I+ M+ D PR+ ++ P +KS K G YI V H+ FD+ L E R
Sbjct: 59 RIHHISDAML--KDQPRIAEVFP----KIKSFLKEGDYI--VGHSV-GFDLQVLSQEAER 109
Query: 236 CSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
+ + +DTL LA+E S + SL+AL ++ +P G+ HRAM DV
Sbjct: 110 IGESFLSKYYVIDTLRLAKEYGDSPNN------SLEALAVHFNVPYDGN-HRAMKDV 159
>gi|74316845|ref|YP_314585.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
25259]
gi|74056340|gb|AAZ96780.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
ATCC 25259]
Length = 470
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 19/165 (11%)
Query: 133 DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDV 190
D+ETTG + +R+ EI + G T+ TLVNP+R +P + GI+ +MV D
Sbjct: 14 DLETTGANAARDRVTEIGVVVVDGDRVETWSTLVNPERAIPQFIQQLTGISNEMVA--DA 71
Query: 191 PRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTL 250
P + L + R LF+AHNAR FD FL +E+ R + L T+
Sbjct: 72 PTFARVADELAERLDGR-------LFIAHNAR-FDYGFLKHEYQRLGRRFRADVLC--TV 121
Query: 251 TLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL 295
L+R L + +L +L +G+ G HRA+AD + +
Sbjct: 122 RLSRRLFPEH-----YRHNLDSLIARHGLATEGDRHRALADADLI 161
>gi|84684641|ref|ZP_01012542.1| putative DNA polymerase III, epsilon subunit and related
3'-5'exonuclease [Maritimibacter alkaliphilus HTCC2654]
gi|84667620|gb|EAQ14089.1| putative DNA polymerase III, epsilon subunit and related
3'-5'exonuclease [Maritimibacter alkaliphilus HTCC2654]
Length = 230
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 26/183 (14%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLG--GENSTFQTLVNPKRQVPNAH--VHGITTDM 184
IV D ETTGF + +R++EI +L T+ +NP+R +P VHG++ +
Sbjct: 4 IVLDTETTGFDPKTGDRMVEIGAVELFNHMPTGRTYHQYINPQRDMPEGAFAVHGLSEEF 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCS-YEVPNN 243
+ D P D+ L ++ G V HNA SFDVPFL E C ++P +
Sbjct: 64 L--KDYPVFADIADAFLEFI-------GDAKLVIHNA-SFDVPFLNAELGWCKRRQIPMD 113
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+DTL +AR+ G+ SL AL +GI ++HR + S IL +
Sbjct: 114 -QSIDTLLIARKKFPGAGN------SLDALCRRFGI---DNSHRTLHGALLDSEILAEVY 163
Query: 304 FDL 306
+L
Sbjct: 164 LEL 166
>gi|326335468|ref|ZP_08201655.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp.
oral taxon 338 str. F0234]
gi|325692234|gb|EGD34186.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp.
oral taxon 338 str. F0234]
Length = 453
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 27/198 (13%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+ DIETTG E I EIA G E F +L+NP++++ + AH+ GI+ MV
Sbjct: 4 ILDIETTGGKLNEESITEIAIYRFDGNEVTDRFISLINPEKKIDDFVAHLTGISNKMV-- 61
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
+ P+ ++ ++ + VAHNA +FD L EF R ++ N +
Sbjct: 62 RNAPKFYEVAKRIIEITDG-------CIIVAHNA-AFDYRILRLEFRRLGFDFHRNTIC- 112
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHR----AMADVNCLSLILQRLT 303
T+ +++ L+ S SL L GIPL+G HR AMA V+ L+L + T
Sbjct: 113 -TVEMSQRLLPQ-----ESSYSLGKLTRSLGIPLLGR-HRANGDAMATVHLFKLLLTKDT 165
Query: 304 FDLKLSLCDLIERGFTPS 321
K +L + +++ PS
Sbjct: 166 --QKTALTEFVKQNLHPS 181
>gi|296129915|ref|YP_003637165.1| DNA polymerase III subunit epsilon [Cellulomonas flavigena DSM
20109]
gi|296021730|gb|ADG74966.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM
20109]
Length = 631
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 101/218 (46%), Gaps = 26/218 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG + I EI + GGE FQTLV+P VP + GITT
Sbjct: 62 VTFVVVDLETTGGRAAEDAITEIGAVKVRGGEVLGEFQTLVDPGGPVPPFIQVLTGITTS 121
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ P + +++P L + + G +L VAHNA FDV FL +R P
Sbjct: 122 MLVG--APTIGEVLPSFLEFAR------GAVL-VAHNA-PFDVGFLRAAAARSERAWP-G 170
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+ +DT+ LAR ++ P+ L L +G V HRA+AD V+ L +L
Sbjct: 171 FQVVDTVRLARRVVLR--DEAPNH-KLSTLAALFGA-TVTPNHRALADARATVDVLHALL 226
Query: 300 QRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
RL L DL T +D + +++S L
Sbjct: 227 GRLAPLGVTHLEDLA----TATDPVPADVRRRSTLADG 260
>gi|385208477|ref|ZP_10035345.1| exonuclease, DNA polymerase III, epsilon subunit family
[Burkholderia sp. Ch1-1]
gi|385180815|gb|EIF30091.1| exonuclease, DNA polymerase III, epsilon subunit family
[Burkholderia sp. Ch1-1]
Length = 383
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 21/176 (11%)
Query: 130 IVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVF D+ETTG S RI E+ ++ S + +LV+P++ +P+ + GIT MV
Sbjct: 15 IVFVDLETTGGSTAEHRITEVGVVEVGPAGVSRWSSLVDPQQPIPSFIQQLTGITNAMVR 74
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P E + P L + + LFVAHNA SFD FL EF R +
Sbjct: 75 --GAPTFEAIAPALFERLNGK-------LFVAHNA-SFDRGFLRGEFRRVGLAFDPD--V 122
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ L+R L + + L AL E + + + HRA+AD + + QRL
Sbjct: 123 LCTVRLSRALFPA-----EKRHGLDALVERHTL-VPSDRHRALADADLIWQFWQRL 172
>gi|269127278|ref|YP_003300648.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
43183]
gi|268312236|gb|ACY98610.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
43183]
Length = 605
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 102/220 (46%), Gaps = 30/220 (13%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG S + I E+ + GGE F TLV+P +P + GIT
Sbjct: 42 VTFVVVDLETTGGSPADSAITEVGAVKVRGGERLGEFATLVDPGVPIPPFITALTGITQQ 101
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV + P M ++P L + + + VAHNA FD+ FL + + P
Sbjct: 102 MVT--NAPPMSAVLPAFLEFARG-------CVLVAHNA-PFDIGFLRAACTAHDHPWP-A 150
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGS--AHRAMAD----VNCLSL 297
+ +DT LAR ++ +P+ L L Y+ G+ HRA+AD V+ L
Sbjct: 151 FPVVDTADLARRVLTR--EEVPN-CKLATLARYF---RTGTEPCHRALADARATVDVLHG 204
Query: 298 ILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
+++RL SL +L TP+ P++++K L
Sbjct: 205 LIERLGSYGVHSLEELRAFAKTPT----PEQRRKRHLADG 240
>gi|429744041|ref|ZP_19277561.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
sp. oral taxon 020 str. F0370]
gi|429163924|gb|EKY06103.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
sp. oral taxon 020 str. F0370]
Length = 461
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 28/184 (15%)
Query: 129 AIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
A+V D+ETTG + +++R+ EIA G + + LVNP+R +P A + GI MV
Sbjct: 21 AVVIDLETTGGNPDSDRVTEIALLRFDDGGVTRYTHLVNPQRGIPAFIAALTGIDDGMVA 80
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCS--YEVPNNW 244
P + +AHN++ FD FL EF+RC + VP
Sbjct: 81 G---------APPFAALAGELLLLLRGCVLLAHNSK-FDYTFLRREFARCGLHFAVPT-- 128
Query: 245 LFMDTLTLARELMKSGGSNLPS--KVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ L+R L P K SL+++ E +GI HRAM+DV L+ L+
Sbjct: 129 --LCTVQLSRRLY-------PQFFKHSLESIIERHGIA-AAPRHRAMSDVLALADYLETA 178
Query: 303 TFDL 306
DL
Sbjct: 179 AADL 182
>gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
goodfellowii F0264]
gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
goodfellowii F0264]
Length = 1438
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 21/176 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTG ++IIEI L G E F +NP+ +P + IT DMV
Sbjct: 413 VVFDIETTGLDPYKDKIIEIGAIKLKGKEIIDEFSVFINPEIDIPEEITALTNITNDMV- 471
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D ++E ++P L + K VAHNA+ FDV F+ + E +
Sbjct: 472 -KDAEKVETVLPKFLEFCKDTT-------VVAHNAK-FDVGFINQKAKNLGLEYSPS--V 520
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL AR L+ + L+ + Y+ + L + HRA+ D + I Q+
Sbjct: 521 IDTLHWARILLPE-----QKRFGLKYIANYFNVVL-DNHHRAVDDAKATAEIFQKF 570
>gi|226360268|ref|YP_002778046.1| hypothetical protein ROP_08540 [Rhodococcus opacus B4]
gi|226238753|dbj|BAH49101.1| putative DNA polymerase III epsilon subunit [Rhodococcus opacus B4]
Length = 588
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 18/213 (8%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG + I EI + GGE + TLV+P R +P + GITT M
Sbjct: 23 TFVVVDLETTGARPGEDAITEIGAVKIRGGEVIAEMATLVDPGRSIPPHIVEITGITTAM 82
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D PR+E ++P L + + G +L VAHNA FD FL + P +
Sbjct: 83 VI--DAPRIERVLPAFLEFAR------GAVL-VAHNA-PFDTGFLKAAAAATDTPWP-KF 131
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ T+ LAR ++ + SL L + P + A A V+ L ++ R+
Sbjct: 132 TVLCTVKLARRVLTRDEAPSVKLSSLARLLDVGTTPTHRALDDARATVDVLHALIARVGN 191
Query: 305 DLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
SL +L++ + P ++ ++ K L S+
Sbjct: 192 QGVHSLTELVD--YLPD--VSSHQRAKRTLASH 220
>gi|406591901|ref|YP_006739081.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci CP3]
gi|405787773|gb|AFS26516.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci CP3]
Length = 249
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 27/177 (15%)
Query: 123 LAKLVTAIVFDIETTGFSRENERIIEIA-----FQDLLGGENSTFQTLVNPKRQVP--NA 175
L K + D E TG + +RIIE A F ++ + +TL+NP R + +
Sbjct: 3 LLKDTVFVCLDCEMTGLDVKKDRIIEFAAIRFTFDRVI----DSMETLINPDRVISAESQ 58
Query: 176 HVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSR 235
+H I+ M+ D PR+ ++ P +KS K G YI V H+ FD+ L E R
Sbjct: 59 RIHHISDAML--KDQPRIAEVFP----KIKSFLKEGDYI--VGHSV-GFDLQVLSQEAER 109
Query: 236 CSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
+ + +DTL LA+E S + SL+AL ++ +P G+ HRAM DV
Sbjct: 110 IGESFLSKYYVIDTLRLAKEYGDSPNN------SLEALAVHFNVPYDGN-HRAMKDV 159
>gi|374366509|ref|ZP_09624588.1| DNA polymerase III, epsilon subunit [Cupriavidus basilensis OR16]
gi|373101979|gb|EHP43021.1| DNA polymerase III, epsilon subunit [Cupriavidus basilensis OR16]
Length = 532
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 94/202 (46%), Gaps = 26/202 (12%)
Query: 130 IVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVF D+ETTG +RI EI ++ + TLV+P +P + GIT DMV
Sbjct: 33 IVFVDLETTGADGTRDRITEIGVVEVGPDGIVEWDTLVDPGIGIPPFIQQLTGITDDMVR 92
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P E L L ++ + LFVAHNAR FD FL NEF R +
Sbjct: 93 --GQPTFESLAQTLAEQLQGK-------LFVAHNAR-FDYGFLKNEFRRVGITFRAD--V 140
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL---- 302
+ TL L+R L S ++ L AL + + G HRA+AD L Q++
Sbjct: 141 LCTLRLSRSLFPSA-----ARHGLDALIARFELQPKGR-HRALADAELLWQFWQKIHELY 194
Query: 303 TFDL-KLSLCDLIERGFTPSDL 323
T DL + ++ L++R P+ L
Sbjct: 195 TVDLVESAVQSLVKRASLPAGL 216
>gi|310779125|ref|YP_003967458.1| DNA polymerase III subunit alpha [Ilyobacter polytropus DSM 2926]
gi|309748448|gb|ADO83110.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
Length = 1442
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 23/169 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +V+D+ET G + IIEI L G + L+NP + +P+ + GIT DM
Sbjct: 414 TYVVYDLETMGLNSHENEIIEIGAIKLKGTRIVDKYSQLINPGKSIPSKIQELTGITDDM 473
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P +E+++P L + G VAHNAR FD+ FL + + +
Sbjct: 474 V--KDEPSIEEVLPGFLEF-------AGDATLVAHNAR-FDIGFLTRDVKKYTNIKDYKP 523
Query: 245 LFMDTLTLARELMKSGGSNLPS--KVSLQALREYYGIPLVGSAHRAMAD 291
+DTL AR+L LP L+++ + G+ L + HRA+ D
Sbjct: 524 SVIDTLQWARDL-------LPDLRGYGLKSVTKKLGVAL-ENHHRAVDD 564
>gi|365867336|ref|ZP_09406919.1| DNA polymerase III subunit epsilon [Streptomyces sp. W007]
gi|364003202|gb|EHM24359.1| DNA polymerase III subunit epsilon [Streptomyces sp. W007]
Length = 340
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 20/168 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQ--DLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKP 188
V D+ETTG +R++ RII A D LG + TLVNP+R +HG+T+D++
Sbjct: 23 VVDVETTGLARDD-RIISAAVYRLDALGNVEDHWYTLVNPERDPGPVWIHGLTSDVLEG- 80
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
P D+ L +K R + VAHNA +FD + E++R S P
Sbjct: 81 -APLFPDVAAELSERLKDR-------VLVAHNA-AFDWSMIAREYARASVIAPVEHRLC- 130
Query: 249 TLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
T+ LA+EL LP+ L +L ++G+ + AH A+ D L+
Sbjct: 131 TIALAKELRLP----LPNH-KLASLAAHFGV-VQQQAHHALDDARVLA 172
>gi|398310752|ref|ZP_10514226.1| DNA polymerase III PolC [Bacillus mojavensis RO-H-1]
Length = 1437
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + IIE+A + GGE F++ NP R + + GIT DM
Sbjct: 420 TYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDKFESFANPHRPLSATIIELTGITDDM 479
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + D+I ++ G + VAHNA SFD+ FL F +
Sbjct: 480 LV--DAPDVIDVIRDFREWI-------GDDILVAHNA-SFDMGFLNVAFKKLLQVEKAKN 529
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DTL L R L ++ L L + + I L HRA+ D + +L ++
Sbjct: 530 PVIDTLELGRFLYPEFKNH-----RLNTLCKKFNIELT-QHHRAIYDTEATAYLLMKM-- 581
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D E+G D +N
Sbjct: 582 -----LEDAAEKGIQYHDQLN 597
>gi|284991755|ref|YP_003410309.1| DNA polymerase III subunit epsilon [Geodermatophilus obscurus DSM
43160]
gi|284065000|gb|ADB75938.1| DNA polymerase III, epsilon subunit [Geodermatophilus obscurus DSM
43160]
Length = 609
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 90/183 (49%), Gaps = 22/183 (12%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG S ++ I EI + GGE FQTLV+P ++P + + GIT+
Sbjct: 37 VTFVVVDLETTGGSPKDSAITEIGAVKVRGGEVLGEFQTLVDPGCEIPPYISVLTGITST 96
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV PR+ ++P L + + G +L VAHNA FD+ FL + P
Sbjct: 97 MVAA--APRIGAVLPHFLEFAR------GAVL-VAHNA-PFDLGFLKAACAANGIPWPAT 146
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DT LAR L+ +P+ L L Y+ HRA+AD V+ L +
Sbjct: 147 -ASVDTAVLARRLLSR--DEVPN-CKLATLAPYFRTS-TEPCHRALADARATVDVLHGLF 201
Query: 300 QRL 302
+RL
Sbjct: 202 ERL 204
>gi|338706598|ref|YP_004673366.1| DNA-directed DNA polymerase III subunit epsilon [Treponema
paraluiscuniculi Cuniculi A]
gi|335344659|gb|AEH40575.1| DNA-directed DNA polymerase III epsilon subunit [Treponema
paraluiscuniculi Cuniculi A]
Length = 215
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 88/175 (50%), Gaps = 19/175 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEI-AFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTD 183
V FD ETTG E +RIIEI A + G + F TL+ P R +P + ++ IT D
Sbjct: 13 VAFTAFDTETTGLKAEEDRIIEIGAVKFDQKGIIARFSTLIFPDRAIPPDVSKINHITDD 72
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ PR +++ ++K G +L VAHNA +FDV FL E S C + P +
Sbjct: 73 MLVNK--PRFCEIVLDFSRFIK------GTVL-VAHNA-NFDVEFLNAELSLCKKQ-PLS 121
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN-CLSL 297
+DT +A+ + G + + LQ L +G+ V +AHRA D C+ L
Sbjct: 122 HKVVDTYAMAQAVFPGLGRH---QYRLQNLALQFGLT-VHAAHRAEDDARVCMEL 172
>gi|121607002|ref|YP_984331.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
gi|120595971|gb|ABM39410.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
Length = 203
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 23/182 (12%)
Query: 131 VFDIETTGFSRE-NERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVC 186
V D ETTG S +R E+A L GG FQ+L+N ++P+ + GIT MV
Sbjct: 6 VIDFETTGISPGCGDRATEVAIVLLEGGRVVDRFQSLMNAGVRIPSFITQLTGITNAMVA 65
Query: 187 -KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
PD ++ + + G VAHNA +FD F E R P
Sbjct: 66 GAPDAAQV----------MTQASRFVGDAPLVAHNA-AFDRKFWQAELDRAGLAAPQP-- 112
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
F+ TL L+R L ++ L +L +++G+P G AHRA+AD +L ++ D
Sbjct: 113 FICTLLLSRRLYPQAPNH-----KLGSLVDFHGLPRTGQAHRALADAEMAVELLGQIQHD 167
Query: 306 LK 307
L+
Sbjct: 168 LR 169
>gi|291542732|emb|CBL15842.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus
bromii L2-63]
Length = 1452
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 100/240 (41%), Gaps = 30/240 (12%)
Query: 95 INVNKTEISKIQRIQHY---DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAF 151
IN ++ +I I ++ Y D+ + + + D T I FDIETTG S ++I EI
Sbjct: 398 INKDEEKIKIIYGVEAYFMDDLVESVKGDADTGFDGTFICFDIETTGLSAARDKITEIGA 457
Query: 152 QDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQ 208
+ G TF T NP+ +P + GIT DMV D P + + L +
Sbjct: 458 VKVENGVITDTFSTFANPEMPIPQKITQLTGITDDMV--KDAPSQSEAVGAFLEF----- 510
Query: 209 KPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKS-GGSNLPSK 267
G + VAHNA FD F+ E N+ +DT+ ++R ++ L +
Sbjct: 511 --AGDNVLVAHNA-PFDTSFIAKACEDMGREY--NYTSIDTVAISRAILTDIKNCKLDTV 565
Query: 268 VSLQALREYYGIPLVGSAHRAMADVNCLSLIL----QRLTFDLKLSLCDLIERGFTPSDL 323
L ++ + HRA D L+ I QRLT D ++ + I D
Sbjct: 566 AKFLRLGDF-------NHHRATDDAEMLARIFINLCQRLTDDYGITKTNDINTKIAGGDF 618
>gi|282890349|ref|ZP_06298877.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338176757|ref|YP_004653567.1| hypothetical protein PUV_27630 [Parachlamydia acanthamoebae UV-7]
gi|281499731|gb|EFB42022.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336481115|emb|CCB87713.1| putative uncharacterized protein [Parachlamydia acanthamoebae UV-7]
Length = 249
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 35/181 (19%)
Query: 123 LAKLVTAIVFDIETTGFSRENERIIEIA-----FQDLLGGENSTFQTLVNPKRQVPNA-- 175
L + T + D ETTG +RIIE+A F +L F++L+NP+ +P +
Sbjct: 3 LLEKATFVCIDCETTGLDVHADRIIEVAVARFTFDQIL----EQFESLINPECPIPESSI 58
Query: 176 HVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILF----VAHNARSFDVPFLIN 231
+H IT +MV D P + +IP +L V+S G +LF +A A +P I
Sbjct: 59 QIHHITAEMVA--DKPPITQVIPQILDAVRSHTIVGHGVLFDIELIAVAAERAGIPCSIR 116
Query: 232 EFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
+ ++DTL LAR +S + SL+ LR ++ I G AHRAM+D
Sbjct: 117 QNP-----------YLDTLRLARLYGESPIN------SLEQLRMHFNIQFEG-AHRAMSD 158
Query: 292 V 292
V
Sbjct: 159 V 159
>gi|384439226|ref|YP_005653950.1| PAS/PAC sensor protein [Thermus sp. CCB_US3_UF1]
gi|359290359|gb|AEV15876.1| PAS/PAC sensor protein [Thermus sp. CCB_US3_UF1]
Length = 629
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 35/194 (18%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGG---ENSTFQTLVNPKRQVPNA--HVHGITTDMV 185
FD+ETTG E + II + LLG F+ L++P R + A VHG+T +M+
Sbjct: 447 AFDLETTGLDPEKDAIIALGAVHLLGRRVLRQEVFEALLDPGRPIAPAATEVHGLTWEML 506
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
PR+E+++P +V+ + +AHN +FD+ FL R + P
Sbjct: 507 Q--GKPRLEEVLPAFRAFVED-------TVLLAHNG-AFDMAFL----RRAGLDQPP--- 549
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
+DTL L+ L + L+ L E +G+P++G H A+ D + + R+
Sbjct: 550 LVDTLLLSHLLFPDLKDH-----RLEHLAERFGVPVLGR-HTALGDALMTAEVFARMVPL 603
Query: 306 LKLSLCDLIERGFT 319
LK ERG+
Sbjct: 604 LK-------ERGYA 610
>gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular
protein) [Cupriavidus taiwanensis LMG 19424]
gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular
protein) [Cupriavidus taiwanensis LMG 19424]
Length = 532
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 97/208 (46%), Gaps = 26/208 (12%)
Query: 124 AKLVTAIVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGI 180
A L IVF D+ETTG + +RI EI ++ ++TL++P +P + GI
Sbjct: 27 AALSRPIVFVDLETTGADAQRDRITEIGVVEVGPDGIVEWETLLDPGMSIPPFIQRMTGI 86
Query: 181 TTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEV 240
+ DMV P E L L ++ R LFVAHNAR FD FL N F R
Sbjct: 87 SDDMVRG--QPTFESLAESLAERLQGR-------LFVAHNAR-FDYGFLKNAFRRAGVTF 136
Query: 241 PNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
+ + T+ L+R L S + L AL +G+ G HRA+AD L Q
Sbjct: 137 RAD--VLCTVRLSRSLFPS-----VERHGLDALIARFGLTPKGR-HRALADAELLWQFWQ 188
Query: 301 RL--TFDLKL---SLCDLIERGFTPSDL 323
++ T+ ++L ++ L+ R P+ L
Sbjct: 189 KIHATYSVELVEAAVRTLVRRASLPAGL 216
>gi|326333554|ref|ZP_08199794.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae
bacterium Broad-1]
gi|325948663|gb|EGD40763.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae
bacterium Broad-1]
Length = 580
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 127 VTAIVFDIETTGFSRENERII-EIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITT 182
+T V D+ETTG S +N +I EI + GGE FQTLVNP +P A + GIT
Sbjct: 42 LTFCVVDLETTGNSPDNGGMITEIGAVKVRGGEVLGEFQTLVNPHTGIPPSIAVLTGITN 101
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
MV P +E ++P L + + + VAHNA FDV FL + ++ P
Sbjct: 102 SMVAS--SPTIESVLPAFLEFAEG-------CVLVAHNA-PFDVGFLKHFAAKQERPWP- 150
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLI 298
+ +DT+ +AR ++ P+ L +L +G P + HRA+ D V+ L +
Sbjct: 151 RFEVLDTVKIARRVITR--DEAPNH-KLGSLARVFGSPTTPN-HRALQDARATVDVLHGM 206
Query: 299 LQRLTFDLKLSLCDL 313
++RL L+L DL
Sbjct: 207 MERLGNLGVLTLEDL 221
>gi|29374711|ref|NP_813863.1| DNA polymerase III subunit epsilon [Enterococcus faecalis V583]
gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|422713135|ref|ZP_16769891.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Enterococcus faecalis TX0309A]
gi|422717758|ref|ZP_16774432.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Enterococcus faecalis TX0309B]
gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Enterococcus faecalis TX0309B]
gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Enterococcus faecalis TX0309A]
Length = 289
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGG-ENSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
I FDIETTG + +I+I+ + G E F TLVN +P+ + GIT D V
Sbjct: 9 IAFDIETTGLDFHQDAVIQISAARYVDGIEVDYFDTLVNSDY-IPDEITKLTGITNDQVL 67
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ P +++++P L Y+ G + V HN +SFD PFL Y +
Sbjct: 68 --NAPTLDEVMPYLFDYL-------GDTILVGHNIKSFDFPFL----KAKGYNIAEGHEI 114
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
DT A K G N L L+ +GI + +H A+ DV +++ L
Sbjct: 115 YDTRYFAA-TRKHGAVN----NQLTTLKLLFGIDAI--SHNALNDVRISAIVFMEL 163
>gi|148261748|ref|YP_001235875.1| DNA polymerase III subunit epsilon [Acidiphilium cryptum JF-5]
gi|146403429|gb|ABQ31956.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5]
Length = 225
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 28/184 (15%)
Query: 129 AIVFDIETTGFSR-ENERIIEIA----FQDLLGGENSTFQTLVNPKRQVPN--AHVHGIT 181
A++FD ETTG +R+IE+A + DL G+ F TL++P+R +P + VHG+T
Sbjct: 4 AVLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGK--VFHTLIDPERDIPAEASRVHGMT 61
Query: 182 T-DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEV 240
+ D+ KP + ++ LL + + P VAHNA FD FL EF+R
Sbjct: 62 SADVAGKP---KFAEIAAELLEFFA--EDP-----LVAHNA-PFDFGFLDAEFARIGRAA 110
Query: 241 PNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLIL 299
+ +DTL LA++ +P+ SL AL + I + H A+ D L+ +
Sbjct: 111 LDRARMIDTLALAKQRF----PGMPN--SLDALCRRFDIDFSARTTHNALLDCKLLAEVY 164
Query: 300 QRLT 303
LT
Sbjct: 165 VELT 168
>gi|170693649|ref|ZP_02884807.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
gi|170141431|gb|EDT09601.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
Length = 423
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 89/192 (46%), Gaps = 25/192 (13%)
Query: 114 EQIIAENKDLAKLVTAIVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQV 172
EQ +AE IVF D+ETTG S RI E+ ++ + + +LV+P++ +
Sbjct: 42 EQFLAE----PAFAEPIVFVDLETTGGSTSEHRITEVGVVEVGPAGVTRWSSLVDPQQPI 97
Query: 173 PN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLI 230
P+ + GIT MV P + + P L + + LFVAHNA SFD FL
Sbjct: 98 PSFIQQLTGITNAMVR--GAPTFDAIAPELFARLNGK-------LFVAHNA-SFDRGFLR 147
Query: 231 NEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMA 290
EF R + + T+ L+R L S + L AL E + + + HRA+A
Sbjct: 148 GEFRRAGISFDPD--VLCTVRLSRALFPS-----EKRHGLDALVERHSL-VPSDRHRALA 199
Query: 291 DVNCLSLILQRL 302
D + + QRL
Sbjct: 200 DADLIWQFWQRL 211
>gi|311740325|ref|ZP_07714155.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC
33035]
gi|311304608|gb|EFQ80681.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC
33035]
Length = 229
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 23/177 (12%)
Query: 131 VFDIETTGFSRENERIIEIAFQ--DLLGGENSTFQTLVNPK-RQVPNAHVHGIT-TDMVC 186
V D ETTGF++ +RIIE+A D + TL+NP +Q+ N+H+HGIT D+
Sbjct: 33 VIDTETTGFNKRYDRIIELAVARFDESFRLVDQWHTLINPDGKQIKNSHIHGITNADVAH 92
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL- 245
P P + Y + + G +L +AHNA FD ++ E R + + + +
Sbjct: 93 APTFPEV---------YTEFAARVDGMVL-MAHNA-PFDSKMILAEAERITPDGEDVYFP 141
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
F+DT+ LA++++ L AL ++ G+ S H A+AD +L +L
Sbjct: 142 FVDTIALAKQMVSL------RSYKLSALLDHVGLHNPQS-HAAIADATATGQMLNKL 191
>gi|358063664|ref|ZP_09150270.1| hypothetical protein HMPREF9473_02333 [Clostridium hathewayi
WAL-18680]
gi|356698099|gb|EHI59653.1| hypothetical protein HMPREF9473_02333 [Clostridium hathewayi
WAL-18680]
Length = 1522
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 90/191 (47%), Gaps = 21/191 (10%)
Query: 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEI-AFQDLLGGENSTFQTLVNPKR 170
D++Q++ +++ +VFDIETTGFS N RIIEI A + G F + VNP
Sbjct: 482 DMKQLVDNSRNQNFDDAYVVFDIETTGFSPLNNRIIEIGAVKVERGVITDKFSSFVNPDV 541
Query: 171 QVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPF 228
+P + GI +MV P+++ ++P L + + VAHNA SFDV F
Sbjct: 542 PIPFRIEQLTGINDNMVLT--APKIDKVLPEFLAFCEGAS-------LVAHNA-SFDVSF 591
Query: 229 LINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRA 288
+ E L DT+TLAR L+ ++ L + + G+ L + HRA
Sbjct: 592 IARNAELLGLEFEPTVL--DTVTLARLLLPQ-----LNRYKLDTVAKALGVSL-ENHHRA 643
Query: 289 MADVNCLSLIL 299
+ D + I
Sbjct: 644 VDDAGATAEIF 654
>gi|339441774|ref|YP_004707779.1| hypothetical protein CXIVA_07100 [Clostridium sp. SY8519]
gi|338901175|dbj|BAK46677.1| hypothetical protein CXIVA_07100 [Clostridium sp. SY8519]
Length = 623
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 23/180 (12%)
Query: 130 IVFDIETTGFSRENERIIEIA---FQDLLGGENSTFQTLVNPKRQVPNA--HVHGITTDM 184
I FD+ETTG S E +RIIE+ F++ G F TLVN ++P+A V+ IT M
Sbjct: 64 IAFDVETTGLSAERDRIIEVGAVIFEN--GIPVDKFGTLVNAMVRIPSAATAVNHITDQM 121
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ + P ++ L+ ++ G AHNAR FD+ FL R Y+
Sbjct: 122 IA--NAPLEREVYAKLIEFLGD--ALTGTTAICAHNAR-FDMDFLSETLERLGYDAE--I 174
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVN-CLSLILQRL 302
++DTL+L+R ++K + + V+ LV +AHRA +D C SL+ L
Sbjct: 175 YYIDTLSLSRNMVKGLENYKQNTVAAH-------FDLVNQNAHRAESDAEICGSLLWNLL 227
>gi|402497000|ref|YP_006556260.1| DNA polymerase III subunit epsilon [Wolbachia endosymbiont of
Onchocerca ochengi]
gi|398650273|emb|CCF78443.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont of
Onchocerca ochengi]
Length = 231
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 90/189 (47%), Gaps = 22/189 (11%)
Query: 130 IVFDIETTGFSRE-NERIIEIAFQDLLG--GENSTFQTLVNPKRQVP--NAHVHGITTDM 184
IV DIETTG E RIIEI +L+ F NP+R VP + +HGI+ +
Sbjct: 8 IVLDIETTGLDIEFGHRIIEIGCIELINRVPTGKVFHQYFNPERDVPYHSFKIHGISEEF 67
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P D++ L ++ + + + HNA FD+ FL E S+ + + ++
Sbjct: 68 L--EDKPLFSDVVLEFLDFISTD-------ILIIHNA-EFDIKFLNMELSKLNTGLISSD 117
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQRLT 303
+DTL LAR+ K G S SL AL + + I L H A+ D L+ + LT
Sbjct: 118 RVLDTLPLARK--KFAG----SPASLSALCKRFNISLKDRELHGALIDAQLLAKVYVELT 171
Query: 304 FDLKLSLCD 312
L+ L D
Sbjct: 172 GGLQTFLFD 180
>gi|315504521|ref|YP_004083408.1| DNA polymerase III, subunit epsilon [Micromonospora sp. L5]
gi|315411140|gb|ADU09257.1| DNA polymerase III, epsilon subunit [Micromonospora sp. L5]
Length = 584
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 18/213 (8%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+ETTG + + I EI + GGE TLVNP +P + GIT M
Sbjct: 31 TFVVVDLETTGGAPDGGGITEIGAVKVRGGEELGVLATLVNPGVPIPPFITVLTGITQAM 90
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ P +E ++P L ++ + VAHNA +DV FL ++ Y PN
Sbjct: 91 LLP--APPIEQVLPSFLEFISD-------AVLVAHNA-PYDVGFLKAACAKHGYRWPNPR 140
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DT LAR ++ +P++ L L Y+ HRA+ D +L L
Sbjct: 141 V-LDTAALARRVLTR--DEVPNR-KLGTLAAYFRT-ATQPTHRALDDAKATVDVLHGLIG 195
Query: 305 DLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
L + + + P +++K L
Sbjct: 196 RLGGHRVGTVGEAIEFARAVTPTQRRKRHLADG 228
>gi|15639630|ref|NP_219080.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189025868|ref|YP_001933640.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
pallidum SS14]
gi|378973151|ref|YP_005221756.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. SamoaD]
gi|378974218|ref|YP_005222825.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. Gauthier]
gi|378975276|ref|YP_005223885.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pallidum DAL-1]
gi|378982127|ref|YP_005230433.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. CDC2]
gi|384422147|ref|YP_005631506.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp.
pallidum str. Chicago]
gi|408502505|ref|YP_006869949.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pallidum str. Mexico A]
gi|6014996|sp|O83649.1|DPO3E_TREPA RecName: Full=DNA polymerase III subunit epsilon
gi|3322942|gb|AAC65617.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189018443|gb|ACD71061.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
pallidum SS14]
gi|291060013|gb|ADD72748.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp.
pallidum str. Chicago]
gi|374677475|gb|AEZ57768.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. SamoaD]
gi|374678545|gb|AEZ58837.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. CDC2]
gi|374679614|gb|AEZ59905.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. Gauthier]
gi|374680675|gb|AEZ60965.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pallidum DAL-1]
gi|408475868|gb|AFU66633.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pallidum str. Mexico A]
Length = 215
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 87/175 (49%), Gaps = 19/175 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEI-AFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTD 183
V FD ETTG E +RIIEI A G + F TL+ P R +P + ++ IT D
Sbjct: 13 VAFTAFDTETTGLKAEEDRIIEIGAVTFDRKGIIARFSTLIFPDRAIPPDVSKINHITDD 72
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ PR +++ ++K G +L VAHNA +FDV FL E S C + P +
Sbjct: 73 MLVNK--PRFCEIVSDFSRFIK------GTVL-VAHNA-NFDVEFLNAELSLCKKQ-PLS 121
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN-CLSL 297
+DT +A+ + G + + LQ L +G+ V +AHRA D C+ L
Sbjct: 122 HKVVDTYAMAQAVFPGLGRH---QYRLQNLALQFGLT-VHAAHRAEDDARVCMEL 172
>gi|419797504|ref|ZP_14322977.1| exonuclease [Neisseria sicca VK64]
gi|385697941|gb|EIG28341.1| exonuclease [Neisseria sicca VK64]
Length = 470
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 22/174 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+V D+E+TG + +R+ EIAF G ++ L+NP + +P + GIT +MV +
Sbjct: 22 VVVDLESTGGNLYQDRVTEIAFLRFENGRVEHYEQLINPGKPIPEFVVQLTGITNEMVAQ 81
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
P + + P +L ++ L VAHN+R FD FL +EF R + L
Sbjct: 82 --APAFDQIAPDILPLLRGS-------LIVAHNSR-FDYTFLRHEFCRAGIDFAAPALC- 130
Query: 248 DTLTLARELMKS-GGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
T+ L+R L NL S +S ++ HRA+ADV L+ L+
Sbjct: 131 -TVQLSRRLYPQFYKHNLDSIISRMGIQ-------TDDRHRALADVLALADYLE 176
>gi|153008185|ref|YP_001369400.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
49188]
gi|151560073|gb|ABS13571.1| DNA polymerase III, epsilon subunit [Ochrobactrum anthropi ATCC
49188]
Length = 231
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 24/182 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGG--ENSTFQTLVNPK-RQV-PNA-HVHGITTDM 184
IVFD ETTG R +R+IEI +L+ TF +NP+ RQV P A VHGI+ +
Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELINKFPTGRTFHKYINPQGRQVHPEALAVHGISNEQ 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P +++ L + + VAHNA FD+ F+ E +R +
Sbjct: 64 LL--DKPTFAEVLDEFLEFFDGAK-------LVAHNA-MFDLGFINAELARLGQAEIQSE 113
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DTL LAR G P+ SL AL + YGI + HR + S IL +
Sbjct: 114 RIIDTLALARRKHPMG----PN--SLDALCKRYGIE---NGHRTLHGALLDSEILAEVYI 164
Query: 305 DL 306
+L
Sbjct: 165 EL 166
>gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10]
gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
Length = 1433
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 21/185 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTG + + +RI EI + G+ F VNP +P+ + GIT DMV
Sbjct: 423 VVFDIETTGLNPQQDRITEIGAVKVRNGQIVDRFSAFVNPGVSIPSFIVKLTGITNDMV- 481
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P +E ++ + +++ + VAHNA +FDV F+ + +V N +L
Sbjct: 482 -KDAPPIEQVLNEFMEFIQGS-------VLVAHNA-NFDVGFIKHNAKIIGEKVKNPYL- 531
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
DTL L R++ G + L + ++ I L + HRA+ D + I +L
Sbjct: 532 -DTLELCRKMFPELG-----RYKLNIVAKHLKIEL-ENHHRAVDDSMATAKIFIHCLNEL 584
Query: 307 KLSLC 311
K C
Sbjct: 585 KEKGC 589
>gi|379729757|ref|YP_005321953.1| putative DNA polymerase III subunit epsilon [Saprospira grandis
str. Lewin]
gi|378575368|gb|AFC24369.1| putative DNA polymerase III epsilon chain [Saprospira grandis str.
Lewin]
Length = 248
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 22/176 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLL-GGENSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+ FD+ETTG S N+RI++I L G LVNP+ +P + VHGI V
Sbjct: 10 VFFDLETTGTSIVNDRIVQIGAIKLFPDGRTEVKNRLVNPQMPIPEGASAVHGIYDKDVV 69
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN-NWL 245
P+ L ++K G +N+ +FD+P L EF+R E P +
Sbjct: 70 NE--PKFRQLAKAFYGWLKDSDLAG-------YNSDNFDIPMLAEEFARAGIEYPTPDTH 120
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
F+D + L R + S + Y G L+ AH A+AD+ IL++
Sbjct: 121 FVDVIKLER--------YVNSHKLGDTYQRYTGEELL-DAHDAIADIEATKTILEK 167
>gi|404316698|ref|ZP_10964631.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi CTS-325]
Length = 231
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 24/182 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGG--ENSTFQTLVNPK-RQV-PNA-HVHGITTDM 184
IVFD ETTG R +R+IEI +L+ TF +NP+ RQV P A VHGI+ +
Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELINKFPTGRTFHKYINPQGRQVHPEALAVHGISNEQ 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P +++ L + + VAHNA FD+ F+ E +R +
Sbjct: 64 LL--DKPTFAEVLDEFLEFFDGAK-------LVAHNA-MFDLGFINAELARLGQAEIQSE 113
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DTL LAR G P+ SL AL + YGI + HR + S IL +
Sbjct: 114 RIIDTLALARRKHPMG----PN--SLDALCKRYGIE---NGHRTLHGALLDSEILAEVYI 164
Query: 305 DL 306
+L
Sbjct: 165 EL 166
>gi|160934103|ref|ZP_02081490.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
gi|156866776|gb|EDO60148.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
leptum DSM 753]
Length = 1451
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 95/215 (44%), Gaps = 24/215 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
I FD+ETTG S N+RI EI + GE F T VNP+R +P + GI MV
Sbjct: 435 ISFDLETTGLSAANDRITEIGAVRIHNGEITDVFNTFVNPERPIPAKITELTGINDSMVI 494
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P+ ++ + L + G + +AHNA FD F+ +R + + N +L
Sbjct: 495 --DAPKEKEAVEAFLEFC------GKEPVLLAHNA-PFDTSFIQAVAARHNLDFSNTYL- 544
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS----LILQRL 302
DT+ + R ++ G N + L+ P + HRA D L+ ++LQRL
Sbjct: 545 -DTVPMCRAML-PGIKNHKLDTVAKHLKL---APF--NHHRASDDAMVLANIFLVLLQRL 597
Query: 303 TFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
D ++ I D+ + + LV N
Sbjct: 598 QEDYQIGKVSQINTALAGGDIKKLRSYHQIILVKN 632
>gi|375146288|ref|YP_005008729.1| DNA polymerase III subunit epsilon [Niastella koreensis GR20-10]
gi|361060334|gb|AEV99325.1| DNA polymerase III, epsilon subunit [Niastella koreensis GR20-10]
Length = 455
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 93/192 (48%), Gaps = 24/192 (12%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGEN--STFQTLVNPKRQVPN--AHVHGITTDMVC 186
+ DIETTG N I EIA L G++ + F+TLV P R +P + GI+ DMV
Sbjct: 4 IVDIETTGGYAANNDITEIAIV-LHDGQSVINRFETLVRPVRTIPYYIQVLTGISNDMVA 62
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ P E++ P + + + +FVAHN +FD FL + FS YE L
Sbjct: 63 --EAPTFEEVAPQIFELLTGK-------IFVAHNV-NFDYSFLKHHFSAAGYE-----LN 107
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF-D 305
++ L R L K LPS SL L ++GI V + HRA D + +L+ L +
Sbjct: 108 LNKLCTVR-LTKKVFPGLPS-YSLGNLCNHFGIA-VYNRHRAGGDTDATVRLLEHLLLHN 164
Query: 306 LKLSLCDLIERG 317
+ + I+RG
Sbjct: 165 AEPHIQQFIKRG 176
>gi|224540943|ref|ZP_03681482.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
15897]
gi|224526094|gb|EEF95199.1| DNA polymerase III, alpha subunit, Gram-positive type
[Catenibacterium mitsuokai DSM 15897]
Length = 1444
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 29/204 (14%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGG-ENSTFQTLVNPKRQVPN--AHVHGITTD 183
+T + FD+ETTG S+ ++ I EI + G E QT + + + + IT +
Sbjct: 402 LTYVSFDLETTGLSQIDDYITEIGAVKIKNGLEVGRLQTFIKSPKPISKKITELTSITNE 461
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE-VPN 242
+ + P +E+ +P L+ + G L +AHN R FD+ L R + N
Sbjct: 462 DI--RNAPTIEEFMPRLMEFF-------GDDLLIAHNGR-FDIGMLDKALERMGKSPISN 511
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPL-VGSAHRAMADVNCLSLILQR 301
W+ DTL L+R L+ L L A+ +Y IP +AHRA D LS
Sbjct: 512 PWI--DTLPLSRRLIP-----LQRSYRLGAVCRFYHIPYDTEAAHRADYDAEVLS----- 559
Query: 302 LTFDLKLSLCDLIERGFTPSDLIN 325
+ L DLI++GF D +N
Sbjct: 560 --HSFNVMLQDLIKKGFKTIDEVN 581
>gi|119717352|ref|YP_924317.1| hypothetical protein Noca_3128 [Nocardioides sp. JS614]
gi|119538013|gb|ABL82630.1| DNA polymerase III, epsilon subunit [Nocardioides sp. JS614]
Length = 601
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 93/184 (50%), Gaps = 23/184 (12%)
Query: 127 VTAIVFDIETTGFSRENERII-EIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITT 182
+T V D+ETTG S E +I EI + GGE FQTLVNP+ ++P A + GI+
Sbjct: 28 ITFCVVDLETTGGSAEGGAMITEIGAVKVRGGEVLGEFQTLVNPRTEIPAFIAVLTGISN 87
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
MV D P +E +P L + G +L VAHNA FDV FL F+
Sbjct: 88 SMVA--DAPPVEAALPAFLEFA------AGSVL-VAHNA-PFDVGFL-RYFAEQQGRPWP 136
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLI 298
+ +DT LAR ++ + P+ L +L + +G + HRA++D V+ L +
Sbjct: 137 GFEVVDTARLARRVVSR--DDAPN-CKLSSLAKAFGSTTTPN-HRALSDARATVDVLHGL 192
Query: 299 LQRL 302
++RL
Sbjct: 193 MERL 196
>gi|420155213|ref|ZP_14662078.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. MSTE9]
gi|394759506|gb|EJF42251.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. MSTE9]
Length = 1450
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
I FDIETTG S E +R+ EI + GE +F VNP +P + GIT +MV
Sbjct: 434 ISFDIETTGLSAEQDRMTEIGAVRIKNGEIADSFDIFVNPGMHIPAKITELTGITDEMV- 492
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P E+ + + +KP + +AHNA +FD F+ R + P + +
Sbjct: 493 -KDAPSEEEALRQFYEFCG--EKP----VLLAHNA-AFDTSFMHAAAERHGMDFP--YPY 542
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGI-PLVGSAHRAMADVNCLSLILQRLTFD 305
+DTL + R ++K L + +Y + P + HRA D L+ I Q L
Sbjct: 543 IDTLPMCRSMLKD-----IKNYKLDTVAKYLKLDPF--NHHRACDDAAVLAKIFQNLLQR 595
Query: 306 LK 307
LK
Sbjct: 596 LK 597
>gi|146329568|ref|YP_001209798.1| DNA polymerase III subunit epsilon [Dichelobacter nodosus VCS1703A]
gi|146233038|gb|ABQ14016.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus
VCS1703A]
Length = 233
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 28/188 (14%)
Query: 129 AIVFDIETTGFSRENE------RIIEIAFQDLLG--GENSTFQTLVNPKRQV-PNA-HVH 178
+++FD ETTG + E++ RIIEI +L+ F +NP++ V P A VH
Sbjct: 5 SVIFDTETTGMNFESDNKAEGHRIIEIGCVELIDRVPTEHYFHCYLNPEQPVDPQAFKVH 64
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEF--SRC 236
GI+ + + D P +D++P Y+ S + VAHN +FD F+ E + C
Sbjct: 65 GISDEFLA--DKPFFKDVLPEFEAYLASADE------LVAHNI-AFDRQFIDRELQLAGC 115
Query: 237 SYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCL 295
Y + + + +D+L +ARE +N L AL + +G+ G H A+ D L
Sbjct: 116 DYRLGDKFTLVDSLKIAREKFAGARNN------LDALCKRFGVDNTGRELHGALLDAQLL 169
Query: 296 SLILQRLT 303
+ + +LT
Sbjct: 170 AEVYLKLT 177
>gi|397690897|ref|YP_006528151.1| DNA polymerase III epsilon subunit [Melioribacter roseus P3M]
gi|395812389|gb|AFN75138.1| DNA polymerase III epsilon subunit [Melioribacter roseus P3M]
Length = 549
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
VFD ETTG S NER+IEI + + T+ + +NP RQVP + GIT D V +
Sbjct: 15 VFDFETTGVSARNERVIEIGIVKIRNKKIIDTYSSYINPGRQVPPFITRLTGITDDDVAQ 74
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
P ED+ +L + G + VAHN + FD FL E + E+P N
Sbjct: 75 --APYFEDVYNDILDFF-------GDSVLVAHNLK-FDYSFLKYECLKTGLEMPENPAVC 124
Query: 248 DTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
TL LA+ + LPSK +L +L + I H + D + IL ++ FDL
Sbjct: 125 -TLQLAKRIY----PELPSK-ALGSLTRHLKIRH-RKVHTGLGDAMATAKILIKM-FDL 175
>gi|291530449|emb|CBK96034.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium
siraeum 70/3]
Length = 1605
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 83/181 (45%), Gaps = 21/181 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVFDIETTG NERI EI L E F T VNP +P+ + GIT DMV
Sbjct: 592 IVFDIETTGLHPANERITEIGAVKLRNMEIVDRFSTFVNPMMPIPSNITELTGITDDMVA 651
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P + + + + G AHNA+ FDV F+ + +R N
Sbjct: 652 --DAPTEDVAVSDFMAFC-------GNSPVCAHNAK-FDVSFIRSAATRMGKSFDNP--V 699
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+DTL++A+ +K G N L + +Y+ + HRA+AD L +I + D
Sbjct: 700 VDTLSIAKAALK-GIKNY----KLDTIAKYFKLGDF-DHHRAVADAEMLCMIYMHIVNDT 753
Query: 307 K 307
+
Sbjct: 754 R 754
>gi|291557938|emb|CBL35055.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium
siraeum V10Sc8a]
Length = 1605
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 86/183 (46%), Gaps = 25/183 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVFDIETTG NERI EI L E F T VNP +P+ + GIT DMV
Sbjct: 592 IVFDIETTGLHPANERITEIGAVKLRNMEIVDRFSTFVNPMMPIPSNITELTGITDDMVA 651
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC--SYEVPNNW 244
D P + + + + G AHNA+ FDV F+ + +R S++ P
Sbjct: 652 --DAPTEDVAVSDFMAFC-------GNSPVCAHNAK-FDVSFIRSAAARMEKSFDNP--- 698
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DTL++A+ +K G N L + +Y+ + HRA+AD L +I +
Sbjct: 699 -VVDTLSIAKAALK-GIKNY----KLDTIAKYFKLGDF-DHHRAVADAEMLCMIYMHIVN 751
Query: 305 DLK 307
D +
Sbjct: 752 DTR 754
>gi|254000498|ref|YP_003052561.1| DNA polymerase III subunit epsilon [Methylovorus glucosetrophus
SIP3-4]
gi|253987177|gb|ACT52034.1| DNA polymerase III, epsilon subunit [Methylovorus glucosetrophus
SIP3-4]
Length = 470
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 89/171 (52%), Gaps = 25/171 (14%)
Query: 130 IVFDIETTGFSRENERIIEIA---FQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDM 184
++ D+ETTG + +RI EIA F++ G E S +QTLVNP+ +P + GI M
Sbjct: 6 VLLDLETTGATPLVDRITEIALIRFEN--GQEVSRWQTLVNPETAIPPFIQRLTGIDDGM 63
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V PR ++ LL++++ G +L AHN R FD FL NEF R ++
Sbjct: 64 VAT--APRFREVAGELLNHLE------GAVL-CAHNVR-FDHGFLKNEFKRIGIDLRQKV 113
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL 295
L T+ L+R+L S+ SL ++ E + + G+ HRAM DV L
Sbjct: 114 LC--TVKLSRKLYPQHRSH-----SLDSIIERHSLQ-CGARHRAMGDVVAL 156
>gi|435853447|ref|YP_007314766.1| DNA polymerase III, alpha chain [Halobacteroides halobius DSM 5150]
gi|433669858|gb|AGB40673.1| DNA polymerase III, alpha chain [Halobacteroides halobius DSM 5150]
Length = 1432
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 15/141 (10%)
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AH 176
++D++K T IVFD+ETTGF+ + IIEI + G ++QT VNP + +P
Sbjct: 411 DQDISK-ETYIVFDLETTGFNPHHNEIIEIGAAKVEAGTITESYQTFVNPSQDIPAKITE 469
Query: 177 VHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC 236
+ GI +MV D P +++ I L ++ G VAHN SFD+ F+ ++ +
Sbjct: 470 LTGINAEMVA--DAPSLKEAITKFLDFI-------GDATLVAHNL-SFDLGFIEDKLRKL 519
Query: 237 SYEVPNNWLFMDTLTLARELM 257
N +DTL L+R L+
Sbjct: 520 DKPKLTNPA-LDTLNLSRALL 539
>gi|349609568|ref|ZP_08888956.1| hypothetical protein HMPREF1028_00931 [Neisseria sp. GT4A_CT1]
gi|348611653|gb|EGY61294.1| hypothetical protein HMPREF1028_00931 [Neisseria sp. GT4A_CT1]
Length = 470
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 22/174 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+V D+E+TG + +R+ EIAF G ++ L+NP + +P + GIT +MV +
Sbjct: 22 VVVDLESTGGNLYQDRVTEIAFLRFENGRVEHYEQLINPGKPIPEFVVQLTGITNEMVAQ 81
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
P + + P +L ++ L VAHN+R FD FL +EF R + L
Sbjct: 82 --APAFDQIAPDILPLLRGS-------LIVAHNSR-FDYTFLRHEFCRAGIDFAAPALC- 130
Query: 248 DTLTLARELMKS-GGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
T+ L+R L NL S +S ++ HRA+ADV L+ L+
Sbjct: 131 -TVQLSRRLYPQFYKHNLDSIISRMGIQ-------TDERHRALADVLALADYLE 176
>gi|114565211|ref|YP_752725.1| DNA polymerase III subunit epsilon [Shewanella frigidimarina NCIMB
400]
gi|114336504|gb|ABI73886.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
400]
Length = 204
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 83/178 (46%), Gaps = 35/178 (19%)
Query: 130 IVFDIETTGFSREN-ERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH---GITTDM 184
+V D ETTG S +N +R IEI L+ G+ TFQ L+NP R+V N+ + GI+ DM
Sbjct: 8 VVLDFETTGLSPDNGDRAIEIGAVKLVNGQIVDTFQELINPGRRV-NSFIEQYTGISNDM 66
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILF------VAHNARSFDVPFLINEFSRCSY 238
L H S+Q G + F VAHNA SFD FL EFS
Sbjct: 67 ---------------LKHAPTSKQVMGQFAKFIDGFNLVAHNA-SFDKKFLDAEFSHSKL 110
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
F +L L+R + + ++ L L +++ +P G HRA+AD S
Sbjct: 111 HYSGQ--FACSLLLSRRISQDAPNH-----KLGTLVDHHQLPNDGVFHRALADATMTS 161
>gi|289426266|ref|ZP_06428012.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187]
gi|289153431|gb|EFD02146.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187]
Length = 584
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 17 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 75
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 76 MV--RSAPSLSAILPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 125
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ G +L L P +HRA+AD V+ L ++
Sbjct: 126 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGLI 180
Query: 300 QRLTFDLKLSLCDLIE 315
R+ +L DL+E
Sbjct: 181 DRVGNLGVTTLEDLLE 196
>gi|422498827|ref|ZP_16575099.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA3]
gi|315085964|gb|EFT57940.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA3]
Length = 584
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 17 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 75
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 76 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 125
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ G +L L P +HRA+AD V+ L ++
Sbjct: 126 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGLI 180
Query: 300 QRLTFDLKLSLCDLIE 315
R+ +L DL+E
Sbjct: 181 DRVGNLGVTTLEDLLE 196
>gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1]
gi|336236015|ref|YP_004588631.1| DNA polymerase III subunit alpha [Geobacillus thermoglucosidasius
C56-YS93]
gi|423720559|ref|ZP_17694741.1| DNA polymerase III, subunit alpha [Geobacillus thermoglucosidans
TNO-09.020]
gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1]
gi|335362870|gb|AEH48550.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
C56-YS93]
gi|383365912|gb|EID43203.1| DNA polymerase III, subunit alpha [Geobacillus thermoglucosidans
TNO-09.020]
Length = 1436
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 95/207 (45%), Gaps = 27/207 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S IIE+A + GE F + NP + + GIT DM
Sbjct: 420 TYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFTSFANPHHPLSMTTIELTGITDDM 479
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P +E+++ ++ G + VAHNA SFD+ FL F++ N
Sbjct: 480 L--KDAPDVEEVLRQFYDWI-------GDSVLVAHNA-SFDIGFLNVGFAKIGLGKVTNP 529
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L L + + I L HRA+ D +L R+
Sbjct: 530 V-IDTLELARFLYPDLKNH-----RLNTLCKKFDIELT-QHHRAIYDAEATGYLLMRM-- 580
Query: 305 DLKLSLCDLIERGFTPSDLINPKKKKK 331
L D ERG D +N + K++
Sbjct: 581 -----LKDAQERGILYHDELNKRSKEE 602
>gi|422385212|ref|ZP_16465347.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
acnes HL096PA3]
gi|327332247|gb|EGE73984.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
acnes HL096PA3]
Length = 584
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 17 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 75
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 76 MV--RSAPSLSTVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 125
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ G +L L P +HRA+AD V+ L ++
Sbjct: 126 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGLI 180
Query: 300 QRLTFDLKLSLCDLIE 315
R+ +L DL+E
Sbjct: 181 DRVGNLGVTTLEDLLE 196
>gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22]
gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
[Streptomyces scabiei 87.22]
Length = 613
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 19/172 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQ--DLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKP 188
+ D+ET+G +R++ ++ D G + F TL+NP HVHG+T D +
Sbjct: 21 LVDVETSGLRPGRDRVLSLSILTLDAQGNQTGEFSTLLNPDCDPGPVHVHGLTADRLAG- 79
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
P E++ P + + SR + VAHNA+ FD FL +EF++ P +
Sbjct: 80 -APAFEEIAPQVGALLSSR-------VLVAHNAQ-FDYDFLAHEFAQVRSWAPVSRRLC- 129
Query: 249 TLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
TL L R + G P + L L +YG+ AH A DV LS IL+
Sbjct: 130 TLALNRLV----GPATP-DLKLGTLAAHYGV-RQEKAHDAQDDVRVLSGILR 175
>gi|227495535|ref|ZP_03925851.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
gi|226831082|gb|EEH63465.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
Length = 206
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 24/178 (13%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
+T + DIETTG +++ I E+A G+ TF +LVNP RQ+P + GI
Sbjct: 15 LTLVSVDIETTGLG-DSDAITELAAVKYQKGQVVETFSSLVNPGRQIPVFITRLTGIDNQ 73
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
+V D P + +++P+ L + + + +AHNAR FD FL+N ++ E
Sbjct: 74 LVA--DAPTLREVLPVFLEFCDFPRS-----VLLAHNAR-FDTRFLMNACAQLGLE---- 121
Query: 244 WLF---MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV-NCLSL 297
W F +DT+ +R L+ L L ++GI +AHRA+AD CL L
Sbjct: 122 WQFPASIDTVFFSRALLPRPQVQ---NHRLGTLAHHFGIK-NPNAHRALADAYTCLEL 175
>gi|407977554|ref|ZP_11158391.1| DNA polymerase III PolC [Bacillus sp. HYC-10]
gi|407415807|gb|EKF37388.1| DNA polymerase III PolC [Bacillus sp. HYC-10]
Length = 1437
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 96/218 (44%), Gaps = 32/218 (14%)
Query: 111 YDIEQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPK 169
Y+ E ++ E+ T +VFD+ETTG S + IIE+A + GGE F+ NP
Sbjct: 409 YNPEHLLLED------ATFVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDRFEAFANPH 462
Query: 170 RQVPNAHVH--GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVP 227
+ + GIT DMV D P + D++ ++ G + VAHNA SFD+
Sbjct: 463 HPLSATTIELTGITDDMV--RDAPDVVDVVRDFKEWI-------GQDILVAHNA-SFDMG 512
Query: 228 FLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHR 287
FL + R + +DTL L R L ++ L L + + I L HR
Sbjct: 513 FLNAAYKRLLKTDKASNPVIDTLELGRFLYPEFKNH-----RLNTLCKKFDIELT-QHHR 566
Query: 288 AMADVNCLSLILQRLTFDLKLSLCDLIERGFTPSDLIN 325
A+ D ++ ++ L D ERG D +N
Sbjct: 567 AIYDAEATGYLMLKM-------LKDAAERGIVYHDQLN 597
>gi|167750041|ref|ZP_02422168.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
gi|167657062|gb|EDS01192.1| DNA polymerase III, alpha subunit, Gram-positive type [Eubacterium
siraeum DSM 15702]
Length = 1605
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 86/183 (46%), Gaps = 25/183 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVFDIETTG NERI EI L E F T VNP +P+ + GIT DMV
Sbjct: 592 IVFDIETTGLHPANERITEIGAVKLRNMEIVERFSTFVNPMMPIPSNITELTGITDDMVA 651
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC--SYEVPNNW 244
D P + + + + G AHNA+ FDV F+ + +R S++ P
Sbjct: 652 --DAPTEDVAVSDFMAFC-------GNSPVCAHNAK-FDVSFIRSAAARMEKSFDNP--- 698
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DTL++A+ +K G N L + +Y+ + HRA+AD L +I +
Sbjct: 699 -VVDTLSIAKAALK-GIKNY----KLDTIAKYFKLGDF-DHHRAVADAEMLCMIYMHIVN 751
Query: 305 DLK 307
D +
Sbjct: 752 DTR 754
>gi|422437763|ref|ZP_16514607.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL092PA1]
gi|327452827|gb|EGE99481.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL092PA1]
Length = 587
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 20 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 78
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 79 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 128
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ G +L L P +HRA+AD V+ L ++
Sbjct: 129 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGLI 183
Query: 300 QRLTFDLKLSLCDLIE 315
R+ +L DL+E
Sbjct: 184 DRVGNLGVTTLEDLLE 199
>gi|225850145|ref|YP_002730379.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
gi|225645024|gb|ACO03210.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
Length = 205
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 28/182 (15%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH---GITTDMVC 186
+ DIETTGF+ E+ IIEIA G F +L+ P+ ++ H+ GITT MV
Sbjct: 13 IIDIETTGFNPESNDIIEIAAIKYQGNIILDRFWSLIKPEIELIPEHISKLTGITTAMVI 72
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL- 245
D P ++ ++P L+++++ + V HN R FD+ FL ++ + E+ N +
Sbjct: 73 --DQPTVDKVLPDFLNFIENT-------ILVGHNIR-FDLAFL----NKKAKEILNKTIK 118
Query: 246 --FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNC-LSLILQRL 302
F+ T LAR+++ S++ SK SL ++ +++ IP HRAM D L + ++ L
Sbjct: 119 NPFICTDHLARKIL----SDIDSK-SLASIAQHFNIPF-SRQHRAMYDAEVNLEIFIKML 172
Query: 303 TF 304
F
Sbjct: 173 RF 174
>gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4]
Length = 1436
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 20/178 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T IVFD+ETTG S + IIE+A + GE F+ NP + ++ GIT DM
Sbjct: 420 TYIVFDVETTGLSANYDTIIELAAVKVFDGEIIDRFERFANPHHPLSATTINLTGITDDM 479
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P + +++ + + + VAHNA SFD+ FL + R + +N
Sbjct: 480 V--KDAPEVSEVVTDFKKWAEDG-------ILVAHNA-SFDMGFLNISYQRAGLKKASNP 529
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ +DTL LAR L S ++ L L + + L HRA+ D IL +L
Sbjct: 530 V-IDTLELARFLYPSMKNH-----RLNTLAKKLDVELT-QHHRAIYDAEATGYILAKL 580
>gi|329119491|ref|ZP_08248176.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464424|gb|EGF10724.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
BAA-1200]
Length = 484
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 24/168 (14%)
Query: 129 AIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMV- 185
A + D+ETTG S + +RI EIAF GG + + +LV+P+R +P + GI + V
Sbjct: 43 AAIVDLETTGGSFDTDRITEIAFLRFDGGTVTPYHSLVHPERPIPPFIRRLTGIGDETVA 102
Query: 186 -CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
P +L+P+L G IL +AHN++ FD FL F+RC +P
Sbjct: 103 GAPPFSALAHELLPLLR----------GCIL-LAHNSK-FDYTFLRRAFARCG--LPFAA 148
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
+ T+ L+R L K SL+++ E +GI S HRA DV
Sbjct: 149 PTLCTVQLSRRLYPQF-----YKHSLESIIERHGI-AAASRHRATDDV 190
>gi|289426896|ref|ZP_06428622.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165]
gi|295130296|ref|YP_003580959.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Propionibacterium acnes SK137]
gi|335051814|ref|ZP_08544722.1| GIY-YIG catalytic domain protein [Propionibacterium sp. 409-HC1]
gi|342211299|ref|ZP_08704024.1| exonuclease [Propionibacterium sp. CC003-HC2]
gi|365973613|ref|YP_004955172.1| hypothetical protein TIA2EST2_03570 [Propionibacterium acnes
TypeIA2 P.acn33]
gi|407935102|ref|YP_006850744.1| hypothetical protein PAC1_03745 [Propionibacterium acnes C1]
gi|417929334|ref|ZP_12572718.1| exonuclease [Propionibacterium acnes SK182]
gi|419420932|ref|ZP_13961160.1| hypothetical protein TICEST70_07027 [Propionibacterium acnes
PRP-38]
gi|422424170|ref|ZP_16501120.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA1]
gi|422435423|ref|ZP_16512280.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA2]
gi|422448757|ref|ZP_16525482.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA3]
gi|422492989|ref|ZP_16569289.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL086PA1]
gi|422502640|ref|ZP_16578885.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA2]
gi|422515935|ref|ZP_16592044.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA2]
gi|422518294|ref|ZP_16594362.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL074PA1]
gi|422524714|ref|ZP_16600723.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA2]
gi|422529392|ref|ZP_16605358.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA1]
gi|422545743|ref|ZP_16621573.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA1]
gi|422549361|ref|ZP_16625161.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA1]
gi|289159985|gb|EFD08163.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165]
gi|291376452|gb|ADE00307.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Propionibacterium acnes SK137]
gi|313772552|gb|EFS38518.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL074PA1]
gi|313802090|gb|EFS43322.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA2]
gi|313838422|gb|EFS76136.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL086PA1]
gi|314918505|gb|EFS82336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA1]
gi|314925502|gb|EFS89333.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA3]
gi|314963121|gb|EFT07221.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA1]
gi|314973624|gb|EFT17720.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA1]
gi|315077585|gb|EFT49643.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA2]
gi|315084628|gb|EFT56604.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA2]
gi|327447777|gb|EGE94431.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA1]
gi|327453554|gb|EGF00209.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA2]
gi|333765718|gb|EGL43053.1| GIY-YIG catalytic domain protein [Propionibacterium sp. 409-HC1]
gi|340766843|gb|EGR89368.1| exonuclease [Propionibacterium sp. CC003-HC2]
gi|340773457|gb|EGR95949.1| exonuclease [Propionibacterium acnes SK182]
gi|365743612|gb|AEW78809.1| hypothetical protein TIA2EST2_03570 [Propionibacterium acnes
TypeIA2 P.acn33]
gi|379977423|gb|EIA10748.1| hypothetical protein TICEST70_07027 [Propionibacterium acnes
PRP-38]
gi|407903683|gb|AFU40513.1| hypothetical protein PAC1_03745 [Propionibacterium acnes C1]
Length = 584
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 17 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 75
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 76 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 125
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ G +L L P +HRA+AD V+ L ++
Sbjct: 126 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGLI 180
Query: 300 QRLTFDLKLSLCDLIE 315
R+ +L DL+E
Sbjct: 181 DRVGNLGVTTLEDLLE 196
>gi|455647715|gb|EMF26647.1| DNA polymerase III subunit epsilon [Streptomyces gancidicus BKS
13-15]
Length = 641
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 29/207 (14%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLL--GGENSTFQTLVNPKRQVPNAHVHGITTDMVCKP 188
+ D+ET+G +R++ +A + G + F TLVNP VHG+T D++
Sbjct: 26 LVDVETSGLVPRRDRVLSVAVITVGPDGEQTGEFSTLVNPGCDPGPVEVHGLTPDVLAG- 84
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
P E + + ++ R + VAHNA+ FD FL +EF+R +P +
Sbjct: 85 -APTFEQVAGRIGAMLQDR-------VLVAHNAQ-FDYDFLAHEFARARMWLPVSQRLC- 134
Query: 249 TLTLARELMKSGGSNLPS-KVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ------- 300
TL L R++ + P+ + L L +YG+P AH A+ D L+ +L+
Sbjct: 135 TLALNRQV------DPPTDDMKLGTLAAHYGVPQQ-RAHDALDDTRVLAGVLRASLREAA 187
Query: 301 RLTFDLKLSLCDL-IERGFTPSDLINP 326
RL L L C E FTPS P
Sbjct: 188 RLDLPLPLVSCPPRAESQFTPSPPKTP 214
>gi|381210021|ref|ZP_09917092.1| DNA-directed DNA polymerase III subunit alpha [Lentibacillus sp.
Grbi]
Length = 1430
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 20/179 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + IIE+A + GE F++ NP + + GIT DM
Sbjct: 415 TYVVFDVETTGLSAVYDTIIELAAVKIHQGEVVDRFESFANPHHPLSQTTIDLTGITDDM 474
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P ++ ++ +++ + VAHNA SFD+ FL F R Y+ N
Sbjct: 475 V--KDAPEIDKVLKDFHEWMEDS-------ILVAHNA-SFDIGFLNQGFQRIDYDKTANP 524
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+ +DTL L+R L ++ L + ++ I L HRA+ D +L +L
Sbjct: 525 V-IDTLELSRFLYPELKNH-----RLNTMCKHLDIELT-QHHRAIYDAEATGYLLWKLV 576
>gi|297625374|ref|YP_003687137.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296921139|emb|CBL55686.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 203
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 131 VFDIETTGFS-RENERIIEIAFQ--DLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCK 187
V D+ETTGFS +RIIEI D G + + TLVNP+R V VH IT+ V
Sbjct: 6 VLDLETTGFSPARGDRIIEIGLVRLDPQGHVDDEWSTLVNPRRTVRATRVHHITSADVAA 65
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
P M +L P L+ ++ R + VAHN+ SFDV FL E +P
Sbjct: 66 --APTMAELAPGLVDKLRDR-------VVVAHNS-SFDVGFLTAELRTAGMTIP 109
>gi|456739492|gb|EMF64031.1| hypothetical protein TIA1EST31_03737 [Propionibacterium acnes
FZ1/2/0]
Length = 584
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 17 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 75
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 76 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 125
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ G +L L P +HRA+AD V+ L ++
Sbjct: 126 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGLI 180
Query: 300 QRLTFDLKLSLCDLIE 315
R+ +L DL+E
Sbjct: 181 DRVGNLGVTTLEDLLE 196
>gi|421860625|ref|ZP_16292731.1| DNA polymerase III [Paenibacillus popilliae ATCC 14706]
gi|410829811|dbj|GAC43168.1| DNA polymerase III [Paenibacillus popilliae ATCC 14706]
Length = 1442
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 27/212 (12%)
Query: 112 DIEQII-AENKDLAKLVTAIVFDIETTGFSRENERIIEIA---FQDLLGGENSTFQTLVN 167
D+E ++ AE ++L K T +VFDIETTG S N ++ EIA QD G E + T VN
Sbjct: 408 DLEVVMNAEPRNL-KEATYVVFDIETTGLSVTNTKMTEIAGVKIQD--GKEIGRYATFVN 464
Query: 168 PKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFD 225
P +P + IT +MV D P ++ ++ + +V G + VAHNAR FD
Sbjct: 465 PHEPIPYPIQQLTNITDEMV--KDAPDIDQVLREFMEFV-------GDAILVAHNAR-FD 514
Query: 226 VPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA 285
V ++ + N + +DTL LAR + ++ L L + Y + L +
Sbjct: 515 VGYVQYNLQKLGMPELTNPV-IDTLELARLIHPKLKNH-----RLNTLADKYKVSL-ENH 567
Query: 286 HRAMADVNCLSLILQRLTFD-LKLSLCDLIER 316
HRA+ D L IL L D L + ++++R
Sbjct: 568 HRAIDDTIALFGILNGLMKDALAIYGIEMLDR 599
>gi|317471587|ref|ZP_07930931.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
gi|316900902|gb|EFV22872.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
Length = 1478
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 21/177 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGF+ + +RIIEI ++ GE TF +NP+ +P + IT +MV
Sbjct: 453 VVFDIETTGFNSQTDRIIEIGAVKVIAGEITETFSEFINPQIPIPFKITQLTTITDEMVM 512
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D ++ ++P L + G + VAHNA FD F+ R + +
Sbjct: 513 NADT--IDAVLPRFLEFC-------GDSVLVAHNA-GFDTGFIHENAKRLDLDF--HPTI 560
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+DTL L+R LM ++L +K +L L + I L + HRA+ D I +
Sbjct: 561 VDTLGLSRSLM----THL-AKFTLDNLCKNLNIKL-ETHHRAVDDATATGKIFIKFV 611
>gi|422393413|ref|ZP_16473466.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
acnes HL099PA1]
gi|422443241|ref|ZP_16520039.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA1]
gi|422445403|ref|ZP_16522150.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA1]
gi|422454750|ref|ZP_16531430.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA3]
gi|422491054|ref|ZP_16567369.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL020PA1]
gi|422510959|ref|ZP_16587105.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA1]
gi|422521558|ref|ZP_16597588.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL045PA1]
gi|422534040|ref|ZP_16609964.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA1]
gi|422569632|ref|ZP_16645239.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL067PA1]
gi|313815838|gb|EFS53552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA1]
gi|314931784|gb|EFS95615.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL067PA1]
gi|314956043|gb|EFT00441.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA1]
gi|314958449|gb|EFT02552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA1]
gi|314976217|gb|EFT20312.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL045PA1]
gi|315088618|gb|EFT60594.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA1]
gi|327451091|gb|EGE97745.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA3]
gi|328753779|gb|EGF67395.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL020PA1]
gi|328760388|gb|EGF73957.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
acnes HL099PA1]
Length = 590
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 23 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 81
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 82 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 131
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ G +L L P +HRA+AD V+ L ++
Sbjct: 132 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGLI 186
Query: 300 QRLTFDLKLSLCDLIE 315
R+ +L DL+E
Sbjct: 187 DRVGNLGVTTLEDLLE 202
>gi|148284671|ref|YP_001248761.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
Boryong]
gi|146740110|emb|CAM80283.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
Boryong]
Length = 222
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 23/190 (12%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLGGEN---STFQTLVNPKRQVPNA--HVHGITTD 183
IV D ET+G ++ RIIEI +L +TF +NP+R + VHG++ D
Sbjct: 5 IVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPERDISKEAYKVHGLSRD 64
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
+ D P+ +++ L ++ Q + HNA +FD+ FL +E R N
Sbjct: 65 FL--SDKPKFREIVDEFLQFIDRAQ-------LIMHNA-NFDMQFLNSELFRIRKSAIPN 114
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQRL 302
+DTLTLAR+ +V+L AL + I H A+ D L+L+ R+
Sbjct: 115 TCVIDTLTLARKRFPK------ERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGRM 168
Query: 303 TFDLKLSLCD 312
+++ L D
Sbjct: 169 MHGMQVVLLD 178
>gi|422554511|ref|ZP_16630283.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA2]
gi|314987763|gb|EFT31854.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA2]
Length = 587
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 20 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 78
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 79 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 128
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ G +L L P +HRA+AD V+ L ++
Sbjct: 129 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGLI 183
Query: 300 QRLTFDLKLSLCDLIE 315
R+ +L DL+E
Sbjct: 184 DRVGNLGVTTLEDLLE 199
>gi|345874845|ref|ZP_08826644.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
weaveri LMG 5135]
gi|417957217|ref|ZP_12600143.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
weaveri ATCC 51223]
gi|343968797|gb|EGV37020.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
weaveri ATCC 51223]
gi|343969950|gb|EGV38153.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
weaveri LMG 5135]
Length = 463
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 83/170 (48%), Gaps = 24/170 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVC- 186
+V D+ETTG + +RI EIA GE ++ LVNP + +P + + GIT +MV
Sbjct: 22 VVVDLETTGGNMLQDRITEIALLRFEAGEVKAYEWLVNPLQPIPVFISGLTGITDEMVAG 81
Query: 187 KPDVPRM-EDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
P + E+L+P+L L VAHN+R FD FL +EF R +
Sbjct: 82 APTFAEIAEELLPLLRG-----------ALVVAHNSR-FDYTFLCHEFRRAGLDFGTA-- 127
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL 295
+ T+ L+R L K +L ++ E +GI S HRAM DV L
Sbjct: 128 AVCTVQLSRSLYPEF-----FKHNLDSIIERFGIE-ADSRHRAMTDVLAL 171
>gi|354606695|ref|ZP_09024665.1| hypothetical protein HMPREF1003_01232 [Propionibacterium sp.
5_U_42AFAA]
gi|386023682|ref|YP_005941985.1| hypothetical protein PAZ_c07700 [Propionibacterium acnes 266]
gi|422388172|ref|ZP_16468275.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
acnes HL096PA2]
gi|422428399|ref|ZP_16505310.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA1]
gi|422461569|ref|ZP_16538193.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL038PA1]
gi|422477763|ref|ZP_16554186.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL007PA1]
gi|422480318|ref|ZP_16556721.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA1]
gi|422482812|ref|ZP_16559201.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA1]
gi|422496087|ref|ZP_16572374.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA1]
gi|422513063|ref|ZP_16589186.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA2]
gi|422539768|ref|ZP_16615641.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA1]
gi|422556487|ref|ZP_16632241.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA2]
gi|422563382|ref|ZP_16639059.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA1]
gi|313764773|gb|EFS36137.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA1]
gi|313807207|gb|EFS45694.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA2]
gi|313813245|gb|EFS50959.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA1]
gi|313820015|gb|EFS57729.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA1]
gi|313825546|gb|EFS63260.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA1]
gi|313830622|gb|EFS68336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL007PA1]
gi|315096369|gb|EFT68345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL038PA1]
gi|315101083|gb|EFT73059.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA1]
gi|327325880|gb|EGE67670.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
acnes HL096PA2]
gi|328753125|gb|EGF66741.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA1]
gi|328759130|gb|EGF72746.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA2]
gi|332675138|gb|AEE71954.1| hypothetical protein PAZ_c07700 [Propionibacterium acnes 266]
gi|353556810|gb|EHC26179.1| hypothetical protein HMPREF1003_01232 [Propionibacterium sp.
5_U_42AFAA]
Length = 587
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 20 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 78
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 79 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 128
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ G +L L P +HRA+AD V+ L ++
Sbjct: 129 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGLI 183
Query: 300 QRLTFDLKLSLCDLIE 315
R+ +L DL+E
Sbjct: 184 DRVGNLGVTTLEDLLE 199
>gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
Length = 386
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 85/180 (47%), Gaps = 21/180 (11%)
Query: 126 LVTAIVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITT 182
L IVF D+ETTG S RI E+ ++ + + +LV+P++ +P+ + GIT
Sbjct: 11 LAEPIVFVDLETTGGSTNEHRITEVGVVEVGPTGVTRWSSLVDPQQPIPSFIQQLTGITN 70
Query: 183 DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
MV P E + P L + + LFVAHNA SFD FL EF R
Sbjct: 71 AMVRG--APTFEAIAPELFARLDGK-------LFVAHNA-SFDRGFLRGEFRRVGISFDP 120
Query: 243 NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ + T+ L+R L S + L AL E + + + HRA+AD + + QRL
Sbjct: 121 D--VLCTVRLSRALFPS-----EKRHGLDALVERHAL-VPSDRHRALADADLIWQFWQRL 172
>gi|357390290|ref|YP_004905130.1| putative exonuclease [Kitasatospora setae KM-6054]
gi|311896766|dbj|BAJ29174.1| putative exonuclease [Kitasatospora setae KM-6054]
Length = 233
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 19/172 (11%)
Query: 131 VFDIETTGFSRENERIIEIAFQDLLGGENST--FQTLVNPKRQVPNAHVHGITTDMVCKP 188
V D+E TG S R++E+A L G + F TLV+P V HVHGI V
Sbjct: 6 VVDVEATGRSPWRHRVVEVAVVQLDAGLRTEREFATLVDPGGPVGPTHVHGIAQADVL-- 63
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
PR + P LL + R + V H+ + D FL EF+R +P L
Sbjct: 64 GAPRFRQIAPRLLELLAGR-------VLVGHHV-TCDRAFLEREFARIGVALPQVPLLCT 115
Query: 249 TLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
R+L ++GG L + V L + AH A+ D +L+
Sbjct: 116 MRLARRQLPEAGGYGLSACVDAAGLGWF-------PAHTALGDARATVELLR 160
>gi|374710447|ref|ZP_09714881.1| DNA polymerase III PolC [Sporolactobacillus inulinus CASD]
Length = 1436
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + IIE+A + GE F NP +P + IT +M
Sbjct: 422 TYVVFDVETTGLSAVYDTIIELAAVKIKNGEVLEKFDQFANPHHPLPQKIIELTSITDEM 481
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P + ++ H+ G + VAHNA +FD+ FL + + YE +N
Sbjct: 482 LT--DAPDADQVVQEFKHF-------AGDAVLVAHNA-TFDMGFLNTAYQKLGYEKADNP 531
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL L R L ++ L L + + I L HRA+ D + ++
Sbjct: 532 V-IDTLELGRFLYPEFKNH-----KLDTLCKAFNIELT-HHHRAIYDTEATGYLAWKM-- 582
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D E+G D +N
Sbjct: 583 -----LKDAAEKGMQYHDQLN 598
>gi|336320547|ref|YP_004600515.1| DNA polymerase III, epsilon subunit [[Cellvibrio] gilvus ATCC
13127]
gi|336104128|gb|AEI11947.1| DNA polymerase III, epsilon subunit [[Cellvibrio] gilvus ATCC
13127]
Length = 622
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 89/183 (48%), Gaps = 22/183 (12%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG + + I EI + GG+ FQTLV+P VP + GITT
Sbjct: 46 VTFVVVDLETTGGTPADCAITEIGAVKVRGGQVLGEFQTLVDPGGPVPPFIQVLTGITTA 105
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ P +E+++P L + G +L VAHNA FDV FL +R + P
Sbjct: 106 MLI--GAPPIEEVLPAFLEFAH------GAVL-VAHNA-PFDVGFLRAAAARTGHAWPGP 155
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+ +DT+ LAR ++ + +L AL P HRA+ D V+ L +L
Sbjct: 156 RV-VDTVRLARRVVTRDEAPNHKLSTLAALFHAEVTP----THRALDDARATVDVLHALL 210
Query: 300 QRL 302
RL
Sbjct: 211 GRL 213
>gi|302338443|ref|YP_003803649.1| DNA polymerase III subunit epsilon [Spirochaeta smaragdinae DSM
11293]
gi|301635628|gb|ADK81055.1| DNA polymerase III, epsilon subunit [Spirochaeta smaragdinae DSM
11293]
Length = 210
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 96/199 (48%), Gaps = 24/199 (12%)
Query: 123 LAKLVTAIVFDIETTGFSRENERIIEI-AFQDLLGGENSTFQTLVNPKRQVPNAH--VHG 179
L + V + FD ETTG +RI+EI A G TF +LV P VP A VHG
Sbjct: 19 LPQNVEFVSFDFETTGLDSFRDRILEIGAVSWRQGKTKETFSSLVRPGIPVPPASTAVHG 78
Query: 180 ITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE 239
IT D + D P + + L +++ + + VAHN FD FL + R
Sbjct: 79 ITDDDLL--DAPDEKGALVSFLRFIEGK-------VAVAHNL-PFDYGFLESSVDRLGLS 128
Query: 240 VPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV-NCLSLI 298
+ + LF+DTLTL+R + LPS +L L + + AHRA++D +C L
Sbjct: 129 L-GDTLFIDTLTLSRRVYP----GLPS-YALGNLITFLNL-FQEDAHRALSDASDCGRLF 181
Query: 299 LQRLTFD---LKLSLCDLI 314
+ L D LK+++ +LI
Sbjct: 182 FRCLDEDKQMLKMTIDELI 200
>gi|225374652|ref|ZP_03751873.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM
16841]
gi|225213511|gb|EEG95865.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM
16841]
Length = 228
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 19/181 (10%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAH--VHGITTDMVC 186
++FD+ETTG S + +IEI+ + G+ F LVNPKR +P A V+ I+ +MV
Sbjct: 18 VLFDLETTGTSCIYDEVIEISAVKVRSGKVVEEFSQLVNPKRPIPYAASMVNHISDEMV- 76
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ P ++P L + G + V HN ++FD+ FL + R + N +
Sbjct: 77 -ANEPDFGQVLPEFLTF-------AGDDILVGHNIQTFDMKFLYRDCERLFQQKLTN-DY 127
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+DTL +A+ L L E+YGI G AHRA+ D + + L +L
Sbjct: 128 VDTLRVAKLCFPEWRHR-----RLSDLAEHYGISTRG-AHRALTDCKMNQQVFEYLAKEL 181
Query: 307 K 307
+
Sbjct: 182 E 182
>gi|255068237|ref|ZP_05320092.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
sicca ATCC 29256]
gi|255047507|gb|EET42971.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
sicca ATCC 29256]
Length = 449
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 22/175 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCK 187
+V D+E+TG + +R+ EIAF G ++ L+NP + +P + GIT +MV +
Sbjct: 1 MVVDLESTGGNLYQDRVTEIAFLRFENGRVEHYEQLINPGKPIPEFVVQLTGITNEMVAQ 60
Query: 188 PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFM 247
P + + P +L ++ L VAHN+R FD FL +EF R + L
Sbjct: 61 --APAFDQIAPDILPLLRGS-------LIVAHNSR-FDYTFLRHEFYRAGIDFAAPALC- 109
Query: 248 DTLTLARELMKS-GGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
T+ L+R L NL S +S ++ HRA+ADV L+ L+
Sbjct: 110 -TVQLSRRLYPQFYKHNLDSIISRMGIQ-------TDDRHRALADVLALADYLEH 156
>gi|422532683|ref|ZP_16608629.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA1]
gi|313791823|gb|EFS39934.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA1]
Length = 597
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 30 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 88
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 89 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 138
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ G +L L P +HRA+AD V+ L ++
Sbjct: 139 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGLI 193
Query: 300 QRLTFDLKLSLCDLIE 315
R+ +L DL+E
Sbjct: 194 DRVGNLGVTTLEDLLE 209
>gi|259415529|ref|ZP_05739450.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
gi|259348759|gb|EEW60521.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
Length = 473
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 15/105 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGG---ENSTFQTLVNPKRQVPNA--HVHGITTDM 184
+VFD ETTG S E + I++IA Q ++ G + F VNP R +P A +HG+
Sbjct: 271 VVFDTETTGLSVETDAIVQIAAQRVMNGRLVKGEVFDAYVNPGRAIPPASTRIHGVRDAD 330
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFL 229
V D P +E +IP H+ K + VAHNA FD+ L
Sbjct: 331 VA--DAPSIEQVIPAFHHFSKDA-------VLVAHNA-PFDIGLL 365
>gi|419759956|ref|ZP_14286241.1| DNA polymerase III PolC [Thermosipho africanus H17ap60334]
gi|407514995|gb|EKF49781.1| DNA polymerase III PolC [Thermosipho africanus H17ap60334]
Length = 1365
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 25/179 (13%)
Query: 131 VFDIETTGFSRENERIIE---IAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMV 185
VFD+ETTG + + IIE + ++D G TF++ V P + + + + GIT DM+
Sbjct: 350 VFDLETTGTNARFDEIIEFGAVKYKD--GKIIDTFKSFVKPSKDINDFTQKLTGITNDML 407
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWL 245
D P +E+++P L +++ G +L VAHNA FD F I E R Y+
Sbjct: 408 --KDAPGIEEVVPKFLEFIE------GTVL-VAHNA-DFDYGF-IREVYRKMYDKDLIMP 456
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGI-PLVGSAHRAMADVNCLSLILQRLT 303
++DTL L+R ++K + L L EY+ + P HRA D + + + +L
Sbjct: 457 YLDTLKLSRVILKGKVKSF----GLGKLVEYFKLGPF--KHHRAFEDASVTAELFGKLV 509
>gi|401417453|ref|XP_003873219.1| mitochondrial DNA polymerase I protein B,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1429
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 114 EQIIAENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVP 173
+ I A+ K + FDIETTG + + I+E+A D + EN+TF TLVNP+R +
Sbjct: 749 QHIEAQGSQKLKTYRIVFFDIETTGLNPSTDAIVEVAMFDPI--ENTTFHTLVNPQRSIT 806
Query: 174 --NAHVHGITTDMVCKPDVPRMEDLIPILLHYV---KSRQKPGGYILFVAHNARSFDVPF 228
+H IT MV D P ++ + + Y+ K+ P ++ V HN S D P
Sbjct: 807 PRTVGIHHITNAMV--RDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPM 864
Query: 229 LINEFSRCSYEVP-NNWLFMDTLTL 252
L + E + LF D+L L
Sbjct: 865 LRRALECHAPECQLDGILFCDSLAL 889
>gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
Length = 623
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 85/190 (44%), Gaps = 26/190 (13%)
Query: 131 VFDIETTGFSRENERIIEIAFQ--DLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKP 188
+ D+ET+G +R++ +A D G + F TL+NP H+HG+T +
Sbjct: 34 LVDVETSGLRPGRDRVLSLAILTLDARGNQTGEFATLLNPGCDPGPVHIHGLTPARLAG- 92
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
P E++ P + + R + VAHNA+ FD FL +EF+ VP +
Sbjct: 93 -APTFEEIAPQVGALLSGR-------VLVAHNAQ-FDYDFLAHEFAHVRSWVPVSRRLC- 142
Query: 249 TLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLIL-------QR 301
TL L R + GS P + L L +YG+ AH A DV LS IL +R
Sbjct: 143 TLALNRLV----GSATP-DLKLGTLAAHYGV-RQERAHDAQDDVRVLSGILRGSLGAAER 196
Query: 302 LTFDLKLSLC 311
L L L C
Sbjct: 197 LGLSLPLLDC 206
>gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
Length = 334
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 22/169 (13%)
Query: 131 VFDIETTGFSRENERIIEIAFQ--DLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKP 188
V D+ETTG +RE+ RI+ A D G + TLVNP+R +HG+T+DM+
Sbjct: 33 VVDVETTGLARED-RIVSAAVYRLDAQGNVEDHWYTLVNPQRDPGPVWIHGLTSDMLQ-- 89
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
D P +D+ + R + VAHNA FD + E++R P
Sbjct: 90 DAPLFKDIAGEFAGRLADR-------VLVAHNA-IFDWQMIAREYARAEETAPVRQRLC- 140
Query: 249 TLTLARELMKSGGSNLP-SKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
T+ L++EL NLP L++L ++G+ + AH A+ D L+
Sbjct: 141 TIALSKEL------NLPLPNHKLESLAAHFGV-VQQRAHHALDDARVLA 182
>gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
WAL-14163]
gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
gi|355627701|ref|ZP_09049388.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. 7_3_54FAA]
gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
WAL-14163]
gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
gi|354820166|gb|EHF04590.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. 7_3_54FAA]
Length = 1511
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +VFDIETTGFS RIIEI + G F + VNP +P + GI +M
Sbjct: 485 TCVVFDIETTGFSPLKNRIIEIGAVRVEEGRIVDKFSSFVNPDVPIPFEIEKLTGINDNM 544
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P+++ ++P L + + + VAHNA FD+ F+ + E N
Sbjct: 545 VL--DAPKIDRVLPEFLEFCRG-------AVMVAHNA-GFDISFIKENARQQGLEF--NP 592
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+DT++LAR L+ NL ++ L + + I L + HRA+ D + I R
Sbjct: 593 TVLDTVSLARVLL----PNL-NRFKLDTVAKELKINL-ANHHRAVDDAGATAEIFVRFIK 646
Query: 305 DLK 307
LK
Sbjct: 647 MLK 649
>gi|422507802|ref|ZP_16583983.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA2]
gi|313818253|gb|EFS55967.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA2]
Length = 597
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 30 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 88
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 89 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 138
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ G +L L P +HRA+AD V+ L ++
Sbjct: 139 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGLI 193
Query: 300 QRLTFDLKLSLCDLIE 315
R+ +L DL+E
Sbjct: 194 DRVGNLGVTTLEDLLE 209
>gi|269956916|ref|YP_003326705.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM
15894]
gi|269305597|gb|ACZ31147.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica
DSM 15894]
Length = 547
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 131 VFDIETTGFSRENERIIEIAF--QDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKP 188
V D+ETTG S +R+IE+A D G + T +NP+R V +HGIT V
Sbjct: 51 VVDVETTGLSPRYDRVIEVAILRLDTNGRTVDEWSTRLNPQRTVGATWIHGITDADVAH- 109
Query: 189 DVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD 248
P D+ + Q+ G + FV HNAR FD F++ E +R ++ P ++
Sbjct: 110 -APSFADVA------AQVAQRLTGAV-FVGHNAR-FDAGFVLAELTRAGWDAPEPTIWC- 159
Query: 249 TLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
T + + S V+ A GI L AH A+ D + +L R
Sbjct: 160 TQAASHHWLPDASSRRLVDVAAAA-----GISLT-HAHSALGDARATAAMLTR 206
>gi|384135108|ref|YP_005517822.1| DNA polymerase III subunit alpha [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339289193|gb|AEJ43303.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 1440
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDMVC 186
+VFD ETTG + + +IEIA + G T+ TL++P+R + V GIT +MV
Sbjct: 428 VVFDTETTGLNAREDTLIEIAAVKVKAGHIVDTYATLIDPERPLDPKIVELTGITNEMVV 487
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P++++ + RQ G +L VAHNA FDV FL R + P
Sbjct: 488 GQ--PKLKEALDGF------RQFARGAVL-VAHNA-EFDVGFLNQCAERLGLD-PWEEPV 536
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+DTL LAR ++ G N L+ L + + + LV + HRA+AD + + R+ D
Sbjct: 537 IDTLALAR-VLYPGEKNY----KLKTLTQKFSVELV-NHHRALADSEATAKVFVRMLQDA 590
Query: 307 K 307
K
Sbjct: 591 K 591
>gi|422396121|ref|ZP_16476152.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
acnes HL097PA1]
gi|422431317|ref|ZP_16508196.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA2]
gi|422432883|ref|ZP_16509751.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA2]
gi|422485714|ref|ZP_16562076.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA2]
gi|422488960|ref|ZP_16565289.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA2]
gi|422526950|ref|ZP_16602940.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA1]
gi|422561291|ref|ZP_16636978.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA1]
gi|422579002|ref|ZP_16654526.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA4]
gi|313809712|gb|EFS47433.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA1]
gi|314915265|gb|EFS79096.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA4]
gi|314978176|gb|EFT22270.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA2]
gi|314983574|gb|EFT27666.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA1]
gi|315098227|gb|EFT70203.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA2]
gi|327330574|gb|EGE72320.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
acnes HL097PA1]
gi|327442625|gb|EGE89279.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA2]
gi|327445348|gb|EGE92002.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA2]
Length = 597
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 30 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 88
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 89 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 138
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ G +L L P +HRA+AD V+ L ++
Sbjct: 139 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGLI 193
Query: 300 QRLTFDLKLSLCDLIE 315
R+ +L DL+E
Sbjct: 194 DRVGNLGVTTLEDLLE 209
>gi|84496154|ref|ZP_00995008.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649]
gi|84382922|gb|EAP98803.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649]
Length = 572
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 85/179 (47%), Gaps = 14/179 (7%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTD 183
VT +V D+ETTG S I EI + GE FQT VNP + +P + + GIT
Sbjct: 18 VTFVVVDLETTGGSPSECGITEIGAVKVRAGEVLGEFQTFVNPGQPIPAFISVLTGITDA 77
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV D PR+E + L + G +L VAHNA FDV FL R + P +
Sbjct: 78 MVR--DAPRVEPALVAFLEFA------AGSVL-VAHNA-GFDVSFLKAACGRAERDWP-S 126
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ +DT+ LAR+L+ + SL L P + H A A V+ L ++ R+
Sbjct: 127 FPVVDTVHLARQLVTRDEAPNHRLGSLAVLFGATTTPDHRALHDARATVDVLHGLIARV 185
>gi|422568975|ref|ZP_16644593.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA2]
gi|314960311|gb|EFT04413.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA2]
Length = 604
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 37 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 95
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 96 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 145
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ G +L L P +HRA+AD V+ L ++
Sbjct: 146 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGLI 200
Query: 300 QRLTFDLKLSLCDLIE 315
R+ +L DL+E
Sbjct: 201 DRVGNLGVTTLEDLLE 216
>gi|374610301|ref|ZP_09683093.1| DNA polymerase III, epsilon subunit [Mycobacterium tusciae JS617]
gi|373550711|gb|EHP77347.1| DNA polymerase III, epsilon subunit [Mycobacterium tusciae JS617]
Length = 197
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 82/177 (46%), Gaps = 23/177 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLL--GGENSTFQTLVNPKRQVPNAHVHGITTDMVC- 186
+V D+ET+GF E R++ +A + G TL++P ++HG+T M+
Sbjct: 12 VVIDVETSGFDPECARVLSVAALVVTANGAITGLMHTLLDPGVDPGPTNIHGLTAAMLAG 71
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+PD + D + LL + R VAHNA FD FL E RC E+P +
Sbjct: 72 QPDFADVADQLAALL---RGRT-------LVAHNA-GFDYAFLAAEAHRCGTELPVTSVL 120
Query: 247 MDTLTLARELMKSGGSNLP-SKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
TL LA +L NL + L AL +++ IP H A+ D L+ L R+
Sbjct: 121 C-TLELAGQL------NLGLDSLKLGALAQHWNIP-QARPHDALDDARVLAAALPRM 169
>gi|404423233|ref|ZP_11004889.1| hypothetical protein MFORT_22235 [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403654631|gb|EJZ09536.1| hypothetical protein MFORT_22235 [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 626
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 98/222 (44%), Gaps = 33/222 (14%)
Query: 128 TAIVFDIETTGFSREN-------ERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH- 178
T +V D+ETTG + I EI + GGE TLV+P R +P V
Sbjct: 32 TFVVVDLETTGGRATAKSPGDGYDAITEIGAVKIRGGEVLGELATLVDPGRSIPPQIVEL 91
Query: 179 -GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCS 237
GITT MV D PR+E ++P L + + + VAHNA FD+ FL R
Sbjct: 92 TGITTAMVR--DAPRIESVLPAFLEFCRG-------AVLVAHNA-GFDIGFLRAAAQRAG 141
Query: 238 YEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VN 293
P + T+ LAR ++ PS V L AL +G + HRA+ D V+
Sbjct: 142 LGWPRPPVLC-TVKLARRVLTR--DEAPS-VKLSALARLFGASTTPT-HRALDDARATVD 196
Query: 294 CLSLILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLV 335
L +++R+ + DL + + P + P +++ L
Sbjct: 197 VLHGLIERVGNQGIHTFADL--KNYLPD--VTPAQRRNRSLA 234
>gi|422537681|ref|ZP_16613569.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL078PA1]
gi|315080369|gb|EFT52345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL078PA1]
Length = 597
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 30 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 88
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 89 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 138
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ G +L L P +HRA+AD V+ L ++
Sbjct: 139 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGLI 193
Query: 300 QRLTFDLKLSLCDLIE 315
R+ +L DL+E
Sbjct: 194 DRVGNLGVTTLEDLLE 209
>gi|422474440|ref|ZP_16550904.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL056PA1]
gi|422506586|ref|ZP_16582809.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA2]
gi|422547510|ref|ZP_16623326.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA3]
gi|313823175|gb|EFS60889.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA2]
gi|313833843|gb|EFS71557.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL056PA1]
gi|314919771|gb|EFS83602.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA3]
Length = 604
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 37 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 95
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 96 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 145
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ G +L L P +HRA+AD V+ L ++
Sbjct: 146 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGLI 200
Query: 300 QRLTFDLKLSLCDLIE 315
R+ +L DL+E
Sbjct: 201 DRVGNLGVTTLEDLLE 216
>gi|372486800|ref|YP_005026365.1| exonuclease, DNA polymerase III, epsilon subunit family
[Dechlorosoma suillum PS]
gi|359353353|gb|AEV24524.1| exonuclease, DNA polymerase III, epsilon subunit family
[Dechlorosoma suillum PS]
Length = 488
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 22/176 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITT---DMVC 186
+ D+ETTG + +RI EI ++ + + +LVNP +P + G+T +MV
Sbjct: 20 VFVDLETTGANPVRDRITEIGIVEVSAAGVTQWSSLVNPGIPIP-PFIQGLTNISDEMVA 78
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D P DL +L +K R LFVAHNAR FD FL NEF R + +
Sbjct: 79 --DAPPFADLAEEVLGRLKGR-------LFVAHNAR-FDYGFLKNEFRRLGLKF--HATV 126
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+ T+ L+R+L + SL AL E +G+ HRA++D + RL
Sbjct: 127 LCTVKLSRKLEPQH-----HRHSLDALVERHGL-YDEHRHRALSDARLIHQFWDRL 176
>gi|189183653|ref|YP_001937438.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
Ikeda]
gi|189180424|dbj|BAG40204.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
Ikeda]
Length = 222
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 23/190 (12%)
Query: 130 IVFDIETTGFS-RENERIIEIAFQDLLGGEN---STFQTLVNPKRQVPNA--HVHGITTD 183
IV D ET+G ++ RIIEI +L +TF +NP+R + VHG++ D
Sbjct: 5 IVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPERDISKEAYKVHGLSRD 64
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
+ D P+ +++ L ++ Q + HNA +FD+ FL +E R N
Sbjct: 65 FL--SDKPKFREIVDEFLQFIDGAQ-------LIMHNA-NFDMQFLNSELFRIRKSAIPN 114
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQRL 302
+DTLTLAR+ +V+L AL + I H A+ D L+L+ R+
Sbjct: 115 TCVIDTLTLARKRFPK------ERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGRM 168
Query: 303 TFDLKLSLCD 312
+++ L D
Sbjct: 169 MRGMQVVLLD 178
>gi|330816132|ref|YP_004359837.1| DNA polymerase III subunit epsilon [Burkholderia gladioli BSR3]
gi|327368525|gb|AEA59881.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
Length = 203
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 128 TAIVFDIETTGFS-RENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTD 183
T V D ETTG S + +R EIA L GE +Q+L+N R++P+ V GIT D
Sbjct: 3 TVAVLDFETTGLSPAQGDRATEIAIVLLRDGEIVDRYQSLMNAGRRIPSDVVALTGITND 62
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ P + ++ G VAHNA FD F +E VP+
Sbjct: 63 MIASA---------PPVASVMREAAAFVGNHPVVAHNA-GFDRRFWQSELGLLG--VPSA 110
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
F TL +AR + S+ L +L E +P G AHRAM D S + RL
Sbjct: 111 HEFACTLLVARRIYPQAPSH-----RLSSLVEMLSLPKTGRAHRAMVDAEMASHLWCRLQ 165
Query: 304 FDL 306
D+
Sbjct: 166 SDM 168
>gi|422552557|ref|ZP_16628348.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA3]
gi|314990240|gb|EFT34331.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA3]
Length = 604
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 37 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 95
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 96 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 145
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNCLSLIL 299
+DTL LAR ++ G +L L P +HRA+AD V+ L ++
Sbjct: 146 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGLI 200
Query: 300 QRLTFDLKLSLCDLIE 315
R+ +L DL+E
Sbjct: 201 DRVGNLGVTTLEDLLE 216
>gi|15618565|ref|NP_224851.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
CWL029]
gi|15836187|ref|NP_300711.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138]
gi|16752385|ref|NP_444644.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39]
gi|33242012|ref|NP_876953.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
TW-183]
gi|4376954|gb|AAD18794.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029]
gi|8163364|gb|AAF73628.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila
pneumoniae AR39]
gi|8979027|dbj|BAA98862.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138]
gi|33236522|gb|AAP98610.1| DNA polymerase III [Chlamydophila pneumoniae TW-183]
Length = 249
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 27/168 (16%)
Query: 132 FDIETTGFSRENERIIEIA-----FQDLLGGENSTFQTLVNPKRQVP--NAHVHGITTDM 184
D E TG + +RIIEIA F ++ S+ + L+NP+R V + VH I+ M
Sbjct: 12 LDCEMTGLDVKKDRIIEIAAVRFTFDSVI----SSIEFLINPERVVSAESQRVHHISNAM 67
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P++ ++ P +K+ K G YI V H+ FD+ L E R + +
Sbjct: 68 L--RDQPKIAEVFP----QIKAFFKEGDYI--VGHSV-GFDLQVLAQEMERIGETFLSKY 118
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADV 292
+DTL LA+E S + SL++L ++ +P G+ HRAM DV
Sbjct: 119 TIIDTLRLAKEYGDSPNN------SLESLAVHFNVPYDGN-HRAMKDV 159
>gi|167895415|ref|ZP_02482817.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 7894]
Length = 350
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 84/179 (46%), Gaps = 23/179 (12%)
Query: 128 TAIVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDM 184
T + F D+ETTG S RI EI + ST+ TLV+P++ +P + GIT M
Sbjct: 13 TPLAFVDLETTGGSAAEHRITEIGVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGITDAM 72
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V P D+ L + + LFVAHNA SFD FL EF R + N
Sbjct: 73 VRG--APTFADIAGALFERLDGK-------LFVAHNA-SFDRGFLRAEFERAG--IAFNP 120
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSLILQRL 302
+ T+ L+R L S+ L AL E + L SA HRA+AD + + Q+L
Sbjct: 121 DVLCTVRLSRALFPR-----ESRHGLDALIERHA--LAPSARHRALADADLIWQFWQKL 172
>gi|365962435|ref|YP_004944001.1| hypothetical protein TIA2EST36_03615 [Propionibacterium acnes
TypeIA2 P.acn31]
gi|365964677|ref|YP_004946242.1| hypothetical protein TIA2EST22_03650 [Propionibacterium acnes
TypeIA2 P.acn17]
gi|422542566|ref|ZP_16618416.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA1]
gi|314968043|gb|EFT12142.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA1]
gi|365739116|gb|AEW83318.1| hypothetical protein TIA2EST36_03615 [Propionibacterium acnes
TypeIA2 P.acn31]
gi|365741358|gb|AEW81052.1| hypothetical protein TIA2EST22_03650 [Propionibacterium acnes
TypeIA2 P.acn17]
Length = 584
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 82/179 (45%), Gaps = 19/179 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 17 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 75
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 76 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 125
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL LAR ++ G +L L P +HRA+AD +L L
Sbjct: 126 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGL 179
>gi|422500997|ref|ZP_16577251.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA2]
gi|313827785|gb|EFS65499.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA2]
Length = 590
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 82/179 (45%), Gaps = 19/179 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 23 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 81
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 82 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 131
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL LAR ++ G +L L P +HRA+AD +L L
Sbjct: 132 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGL 185
>gi|167746785|ref|ZP_02418912.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662]
gi|167653745|gb|EDR97874.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerostipes
caccae DSM 14662]
Length = 1475
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 21/177 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGF+ + +RIIEI ++ GE TF +NP+ +P + IT +MV
Sbjct: 450 VVFDIETTGFNSQTDRIIEIGAVKVIDGEITETFSEFINPQIPIPFKITQLTTITDEMVM 509
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
D ++ ++P L + G + VAHNA FD F+ R + +
Sbjct: 510 NADT--IDAVLPRFLEFC-------GDSVLVAHNA-GFDTGFIHENAKRLDLDF--HPTI 557
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+DTL L+R LM ++L +K +L L + I L + HRA+ D I +
Sbjct: 558 VDTLGLSRSLM----THL-AKFTLDNLCKNLNIKL-ETHHRAVDDATATGKIFIKFV 608
>gi|42520014|ref|NP_965929.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|99034422|ref|ZP_01314429.1| hypothetical protein Wendoof_01000768 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|42409751|gb|AAS13863.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 231
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 90/189 (47%), Gaps = 22/189 (11%)
Query: 130 IVFDIETTGFSREN-ERIIEIAFQDLLG--GENSTFQTLVNPKRQVP--NAHVHGITTDM 184
IV D ETTG E+ RIIEI +L+ F +NP+R +P + +HGI+ +
Sbjct: 8 IVLDTETTGLDTESGHRIIEIGCVELINRIPTGKVFHRYLNPERDIPYHSFKIHGISEEF 67
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P D+ L ++ + + V HNA FDV FL E S+ + + ++
Sbjct: 68 L--EDKPLFSDVALEFLDFISND-------ILVIHNAE-FDVKFLNMELSKLNARLISSD 117
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQRLT 303
+DTL LAR+ K G S SL AL + + I L H A+ D L+ + LT
Sbjct: 118 RVLDTLPLARK--KFAG----SPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELT 171
Query: 304 FDLKLSLCD 312
L+ L D
Sbjct: 172 GGLQTFLFD 180
>gi|422452161|ref|ZP_16528862.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA2]
gi|315108203|gb|EFT80179.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA2]
Length = 584
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 82/179 (45%), Gaps = 19/179 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGITTD 183
VT V D+ETTG S E +I EI + GG FQTLV P +P + + GIT
Sbjct: 17 VTFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEGEFQTLVCPTGPIPASVQVLTGITHA 75
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV P + ++P L + +S VAHNAR FD+ FL +++ Y +
Sbjct: 76 MV--RSAPSLSAVLPSWLEFSRS-------TALVAHNAR-FDIGFLQRAYAQHDYPWGDP 125
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL LAR ++ G +L L P +HRA+AD +L L
Sbjct: 126 -AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTP----SHRALADARATVDVLHGL 179
>gi|433635258|ref|YP_007268885.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070017]
gi|432166851|emb|CCK64354.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070017]
Length = 645
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 28/188 (14%)
Query: 128 TAIVFDIETTGF------SRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH-- 178
T +V D+ETTG + + I EI + GG F TLVNP+R +P V
Sbjct: 42 TFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQRSIPPQIVRLT 101
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GITT MV + P ++ ++P+ + G + VAHNA FD+ FL RC
Sbjct: 102 GITTAMVG--NAPTIDAVLPMFFEFA-------GDSVLVAHNA-GFDIGFLRAAARRCDI 151
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNC 294
P + T+ LAR ++ PS V L AL + + + HRA+ D V+
Sbjct: 152 TWPQPQVLC-TVRLARRVLSR--DEAPS-VRLAALAQLFAV-ASNPTHRALDDARATVDV 206
Query: 295 LSLILQRL 302
L +++R+
Sbjct: 207 LHALIERV 214
>gi|430808473|ref|ZP_19435588.1| DNA polymerase III, epsilon subunit [Cupriavidus sp. HMR-1]
gi|429499167|gb|EKZ97615.1| DNA polymerase III, epsilon subunit [Cupriavidus sp. HMR-1]
Length = 530
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 88/193 (45%), Gaps = 24/193 (12%)
Query: 130 IVF-DIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
IVF D+ETTG + +RI EI ++ + TLV+P +P + GIT DMV
Sbjct: 35 IVFVDLETTGADAQRDRITEIGVVEVGPDGIQEWDTLVDPLTSIPPFVQGLTGITDDMVR 94
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P + L ++ R LFVAHNAR FD FL NEF R +
Sbjct: 95 G--QPTFALIAEALAEKLQGR-------LFVAHNAR-FDYGFLKNEFRRAGVTFRAD--V 142
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306
+ TL L+R L S + L AL +G+ G HRA+AD L Q++
Sbjct: 143 LCTLRLSRSLFPS-----VERHGLDALIARFGLTPKGR-HRALADAELLWQFWQKIH--- 193
Query: 307 KLSLCDLIERGFT 319
++ DL+E T
Sbjct: 194 EIYSVDLVESAVT 206
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,152,918,039
Number of Sequences: 23463169
Number of extensions: 208518878
Number of successful extensions: 492682
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 4339
Number of HSP's that attempted gapping in prelim test: 490904
Number of HSP's gapped (non-prelim): 4790
length of query: 339
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 196
effective length of database: 9,003,962,200
effective search space: 1764776591200
effective search space used: 1764776591200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)