BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019538
(339 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q895K2|DPO3_CLOTE DNA polymerase III PolC-type OS=Clostridium tetani (strain
Massachusetts / E88) GN=polC PE=3 SV=1
Length = 1427
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 27/202 (13%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDMVC 186
+VFDIETTGFS +N++IIEI + G+ + T VNP+R +P + GI MV
Sbjct: 414 VVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYMV- 472
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC-SYEVPNNWL 245
D P++E+++P + +++ + VAHNA +FDV F+ C + + N
Sbjct: 473 -KDAPKIEEVLPKFIDFIEDS-------ILVAHNA-NFDVSFIK---KNCKDFGIHFNNP 520
Query: 246 FMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
+DT+ L + L + L + ++ GIPL+ + HRA+ D IL + D
Sbjct: 521 ILDTIPLCKFLYPE-----LKRYKLNVVAKHLGIPLL-NHHRAVEDAKTTGDILLKAFED 574
Query: 306 LK----LSLCDLIERGFTPSDL 323
LK ++L L E F D+
Sbjct: 575 LKDKEIMNLNMLNEEYFKNQDI 596
>sp|Q8XJR3|DPO3_CLOPE DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13
/ Type A) GN=polC PE=3 SV=1
Length = 1449
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 89/174 (51%), Gaps = 21/174 (12%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPN--AHVHGITTDMVC 186
+VFDIETTGFS +N++IIEI L GE +F T V+PK +P + IT +MV
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMVN 495
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P +++++P + +V G + VAHNA +FDV F+ + N
Sbjct: 496 GQ--PTIDEVLPKFMEFV-------GNSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP--V 543
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
MDT+ LAR L KV L + ++ GI L + HRA+ D + IL+
Sbjct: 544 MDTVPLARYLYPD-----LKKVKLNLVAKHLGISL-ENHHRAVDDAKATAEILK 591
>sp|Q4L5W6|DPO3_STAHJ DNA polymerase III PolC-type OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=polC PE=3 SV=1
Length = 1438
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 28/211 (13%)
Query: 120 NKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH 178
++DL K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++
Sbjct: 414 DRDL-KEATYVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDKFERFSNPHEKLSETIIN 472
Query: 179 --GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC 236
IT DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R
Sbjct: 473 LTHITDDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERL 522
Query: 237 SYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLS 296
+ N + +DTL L+R + G K L L + YG+ L HRA+ D +
Sbjct: 523 GFGPSTNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTESTA 575
Query: 297 LILQRLTFDLKLSLCDLIERGFTPSDLINPK 327
I ++ +K E G T IN K
Sbjct: 576 YIFIKMVQQMK-------ELGVTNHKDINQK 599
>sp|P0C1P9|DPO3_STAAU DNA polymerase III PolC-type OS=Staphylococcus aureus GN=polC PE=3
SV=1
Length = 1435
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LTFDLK 307
+ +K
Sbjct: 579 MVQQMK 584
>sp|Q5HPS7|DPO3_STAEQ DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=polC PE=3 SV=2
Length = 1438
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>sp|Q6GHH1|DPO3_STAAR DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
MRSA252) GN=polC PE=3 SV=1
Length = 1438
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>sp|P68852|DPO3_STAAW DNA polymerase III PolC-type OS=Staphylococcus aureus (strain MW2)
GN=polC PE=3 SV=1
Length = 1436
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LTFDLK 307
+ +K
Sbjct: 579 MVQQMK 584
>sp|Q2G1Z8|DPO3_STAA8 DNA polymerase III PolC-type OS=Staphylococcus aureus (strain NCTC
8325) GN=polC PE=3 SV=1
Length = 1436
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LTFDLK 307
+ +K
Sbjct: 579 MVQQMK 584
>sp|Q2FHH4|DPO3_STAA3 DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
USA300) GN=polC PE=3 SV=1
Length = 1436
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 416 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 475
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 476 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 525
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 526 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 578
Query: 302 LTFDLK 307
+ +K
Sbjct: 579 MVQQMK 584
>sp|Q6G9U9|DPO3_STAAS DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
MSSA476) GN=polC PE=3 SV=1
Length = 1438
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>sp|A6QGG4|DPO3_STAAE DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
Newman) GN=polC PE=3 SV=1
Length = 1438
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>sp|Q5HGG7|DPO3_STAAC DNA polymerase III PolC-type OS=Staphylococcus aureus (strain COL)
GN=polC PE=3 SV=2
Length = 1438
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>sp|Q8CPG6|DPO3_STAES DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=polC PE=3 SV=1
Length = 1442
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 422 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 481
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 482 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 531
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 532 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 584
Query: 302 LTFDLK 307
+ +K
Sbjct: 585 MVQQMK 590
>sp|P63982|DPO3_STAAN DNA polymerase III PolC-type OS=Staphylococcus aureus (strain N315)
GN=polC PE=1 SV=1
Length = 1438
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>sp|P63981|DPO3_STAAM DNA polymerase III PolC-type OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=polC PE=3 SV=1
Length = 1438
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>sp|A7X1P4|DPO3_STAA1 DNA polymerase III PolC-type OS=Staphylococcus aureus (strain Mu3 /
ATCC 700698) GN=polC PE=3 SV=1
Length = 1438
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>sp|Q8EQU6|DPO3_OCEIH DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=polC PE=3
SV=1
Length = 1428
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 20/179 (11%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + IIE+A + GGE F++ NP + + GIT DM
Sbjct: 413 TFVVFDVETTGLSAVYDTIIELAAVKIKGGEIVDRFESFANPHHALSQTTIDLTGITDDM 472
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P + D++ ++ G + VAHNA SFD+ FL F R YE +N
Sbjct: 473 VN--DAPEVADVLKDFHTWM-------GNDILVAHNA-SFDMGFLNQGFQRIDYEKASNP 522
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+ +DTL LAR L+ ++ L L ++ I L HRA+ D +L +L
Sbjct: 523 V-VDTLELARFLLPELRNH-----RLNTLCKHLDIELT-QHHRAIYDAEATGYLLWKLV 574
>sp|Q2YXK4|DPO3_STAAB DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=polC PE=3 SV=1
Length = 1438
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 20/186 (10%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GIT 181
K T +VFD+ETTG S + +IIE+A + GE F+ NP ++ ++ IT
Sbjct: 418 KDATYVVFDVETTGLSNQYNKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ + R +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFGPS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + I +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIK 580
Query: 302 LTFDLK 307
+ +K
Sbjct: 581 MVQQMK 586
>sp|Q8RA32|DPO3_THETN DNA polymerase III PolC-type OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=polC PE=3 SV=1
Length = 1401
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 25/178 (14%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA----HVHGITTDM 184
+VFDIETTG S N+ IIEI + + TF+T VNP Q+P + + GI M
Sbjct: 389 VVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNP--QIPISSFITKLTGIDESM 446
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
V D P +E+++P L + K G +L VAHNA +FDV F+ ++ + V N
Sbjct: 447 V--KDAPLIEEVLPKFLEFAK------GAVL-VAHNA-NFDVSFIKSKAKKLGLTVENTV 496
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
L DTL L+R L + L L E++ + L+ HRA+ D + I ++
Sbjct: 497 L--DTLELSRHLYQD-----LKNYKLDTLAEFFEVKLL-HHHRAVEDAKATAEIFIKM 546
>sp|Q819Y5|DPO3_BACCR DNA polymerase III PolC-type OS=Bacillus cereus (strain ATCC 14579
/ DSM 31) GN=polC PE=3 SV=1
Length = 1435
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + +IE+A + GGE F++ NP + + + GIT DM
Sbjct: 419 TYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITDDM 478
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNW 244
+ D P ++++ + K + G + L VAHNA SFD+ F+ F + E NN
Sbjct: 479 LT--DAPEVDEV------FKKFEEWMGDHTL-VAHNA-SFDMGFINVGFKKAGLEKTNNP 528
Query: 245 LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTF 304
+ +DTL LAR L ++ L + + I L HRA+ D +L ++
Sbjct: 529 V-IDTLELARFLFPEMKNH-----RLNTMCKKLDIELT-QHHRAIYDTEATGYLLVKM-- 579
Query: 305 DLKLSLCDLIERGFTPSDLIN 325
L D+IE+GF D +N
Sbjct: 580 -----LKDVIEKGFEYHDQLN 595
>sp|Q49X49|DPO3_STAS1 DNA polymerase III PolC-type OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=polC
PE=3 SV=1
Length = 1438
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 125 KLVTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNA--HVHGIT 181
K T +VFD+ETTG S + ++IIE+A + GE F+ NP ++ ++ I+
Sbjct: 418 KTATYVVFDVETTGLSNQYDKIIELAAVKVKDGEIIDKFERFSNPHERLSETIKNLTHIS 477
Query: 182 TDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
DM+ D P +E+++ +V G +FVAHNA SFD+ F+ +
Sbjct: 478 DDMLV--DAPEIEEVLTEFKSWV-------GDAIFVAHNA-SFDMGFIDTGYEHVGIGAS 527
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
N + +DTL L+R + G K L L + YG+ L HRA+ D + + +
Sbjct: 528 TNGV-IDTLELSRTINTEYG-----KHGLNFLAKKYGVELT-QHHRAIYDTEATAYMFIK 580
Query: 302 L 302
+
Sbjct: 581 M 581
>sp|O83649|DPO3E_TREPA DNA polymerase III subunit epsilon OS=Treponema pallidum (strain
Nichols) GN=dnaQ PE=3 SV=1
Length = 215
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 87/175 (49%), Gaps = 19/175 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEI-AFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTD 183
V FD ETTG E +RIIEI A G + F TL+ P R +P + ++ IT D
Sbjct: 13 VAFTAFDTETTGLKAEEDRIIEIGAVTFDRKGIIARFSTLIFPDRAIPPDVSKINHITDD 72
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
M+ PR +++ ++K G +L VAHNA +FDV FL E S C + P +
Sbjct: 73 MLVNK--PRFCEIVSDFSRFIK------GTVL-VAHNA-NFDVEFLNAELSLCKKQ-PLS 121
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN-CLSL 297
+DT +A+ + G + + LQ L +G+ V +AHRA D C+ L
Sbjct: 122 HKVVDTYAMAQAVFPGLGRH---QYRLQNLALQFGLT-VHAAHRAEDDARVCMEL 172
>sp|P13267|DPO3_BACSU DNA polymerase III PolC-type OS=Bacillus subtilis (strain 168)
GN=polC PE=1 SV=2
Length = 1437
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 93/202 (46%), Gaps = 28/202 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDM 184
T +VFD+ETTG S + IIE+A + GGE F+ NP R + + GIT DM
Sbjct: 420 TYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATIIELTGITDDM 479
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSR-CSYEVPNN 243
+ D P + D+I ++ G + VAHNA SFD+ FL + + E N
Sbjct: 480 L--QDAPDVVDVIRDFREWI-------GDDILVAHNA-SFDMGFLNVAYKKLLEVEKAKN 529
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+ +DTL L R L ++ L L + + I L HRA+ D + +L ++
Sbjct: 530 PV-IDTLELGRFLYPEFKNH-----RLNTLCKKFDIELT-QHHRAIYDTEATAYLLLKM- 581
Query: 304 FDLKLSLCDLIERGFTPSDLIN 325
L D E+G D +N
Sbjct: 582 ------LKDAAEKGIQYHDELN 597
>sp|Q10384|Y2191_MYCTU Uncharacterized protein Rv2191/MT2247 OS=Mycobacterium tuberculosis
GN=Rv2191 PE=4 SV=1
Length = 645
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 28/188 (14%)
Query: 128 TAIVFDIETTGF------SRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH-- 178
T +V D+ETTG + + I EI + GG F TLVNP+ +P V
Sbjct: 42 TFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLT 101
Query: 179 GITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSY 238
GITT MV + P ++ ++P+ + G + VAHNA FD+ FL RC
Sbjct: 102 GITTAMVG--NAPTIDAVLPMFFEFA-------GDSVLVAHNA-GFDIGFLRAAARRCDI 151
Query: 239 EVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD----VNC 294
P + T+ LAR ++ PS V L AL + + HRA+ D V+
Sbjct: 152 TWPQPQVLC-TMRLARRVLSR--DEAPS-VRLAALARLFAV-ASNPTHRALDDARATVDV 206
Query: 295 LSLILQRL 302
L +++R+
Sbjct: 207 LHALIERV 214
>sp|Q92C34|DPO3_LISIN DNA polymerase III PolC-type OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=polC PE=3 SV=1
Length = 1444
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 20/184 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTD 183
T VFD+ETTG S + IIE+A + GE F+ ++P + ++ GIT D
Sbjct: 426 ATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV D PI + + R+ G IL VAHNA SFD+ F+ + + E N
Sbjct: 486 MVKGSD--------PIDVVLKQFREWSGDDIL-VAHNA-SFDMGFINTAYEKVGLEKAKN 535
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+ +DTL LAR L ++ L L + + I ++ HRA+ D + + +L
Sbjct: 536 AV-VDTLELARFLYPHFKNH-----RLNTLTKKFNI-ILEQHHRAVFDAEATAYLAWKLI 588
Query: 304 FDLK 307
D K
Sbjct: 589 KDAK 592
>sp|A0AIC1|DPO3_LISW6 DNA polymerase III PolC-type OS=Listeria welshimeri serovar 6b
(strain ATCC 35897 / DSM 20650 / SLCC5334) GN=polC PE=3
SV=1
Length = 1444
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 20/184 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTD 183
T VFD+ETTG S + IIE+A + GE F+ ++P + ++ GIT D
Sbjct: 426 ATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV D PI + + ++ G IL VAHNA SFD+ F+ + + E +N
Sbjct: 486 MVKGSD--------PIDVVLKRFKEWSGDDIL-VAHNA-SFDMGFINTAYEKVGLEKADN 535
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+ +DTL LAR L ++ L L + + I ++ HRA+ D + + +L
Sbjct: 536 AV-VDTLELARFLYPHFKNH-----RLNTLTKKFNI-ILEQHHRAVFDAEATAYLAWKLI 588
Query: 304 FDLK 307
D K
Sbjct: 589 KDAK 592
>sp|A5IJJ8|DPO3_THEP1 DNA polymerase III PolC-type OS=Thermotoga petrophila (strain RKU-1
/ ATCC BAA-488 / DSM 13995) GN=polC PE=3 SV=1
Length = 1367
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 27/182 (14%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVP--NAHVHGITTDM 184
T +V D ETTG + + IIEI + G+ + TL+ P R++ ++ + GIT +M
Sbjct: 357 TFVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDEYHTLIKPSREISRRSSEITGITQEM 416
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFL---INEFSRCSYEVP 241
+ + +E+++P L ++++ + VAHNA +FD FL I + +E P
Sbjct: 417 L--ENKRSIEEVLPEFLGFLENS-------IIVAHNA-NFDYRFLRLWIKKVMGLDWERP 466
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQR 301
++DTL LA+ L+K +L S V L + HRA+ D + + R
Sbjct: 467 ----YIDTLALAKSLLKMRSYSLDSVVEKLGLGPF-------RHHRALDDARVTAQVFLR 515
Query: 302 LT 303
Sbjct: 516 FV 517
>sp|Q8Y7G1|DPO3_LISMO DNA polymerase III PolC-type OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=polC PE=3 SV=1
Length = 1444
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 20/184 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTD 183
T VFD+ETTG S + IIE+A + GE F+ ++P + ++ GIT D
Sbjct: 426 ATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV D PI + + ++ G IL VAHNA SFD+ F+ + + E N
Sbjct: 486 MVKGSD--------PIDVVLKRFKEWSGDDIL-VAHNA-SFDMGFINTAYEKVGLEKAEN 535
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+ +DTL LAR L ++ L L + + I ++ HRA+ D + + +L
Sbjct: 536 AV-VDTLELARFLYPHFKNH-----RLNTLTKKFNI-ILEQHHRAVFDAEATAYLAWKLI 588
Query: 304 FDLK 307
D K
Sbjct: 589 KDAK 592
>sp|Q720A2|DPO3_LISMF DNA polymerase III PolC-type OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=polC PE=3 SV=1
Length = 1444
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 20/184 (10%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTD 183
T VFD+ETTG S + IIE+A + GE F+ ++P + ++ GIT D
Sbjct: 426 ATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN 243
MV D PI + + ++ G IL VAHNA SFD+ F+ + + E N
Sbjct: 486 MVKGSD--------PIDVVLKRFKEWSGDDIL-VAHNA-SFDMGFINTAYEKVGLEKAEN 535
Query: 244 WLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
+ +DTL LAR L ++ L L + + I ++ HRA+ D + + +L
Sbjct: 536 AV-VDTLELARFLYPHFKNH-----RLNTLTKKFNI-ILEQHHRAVFDAEATAYLAWKLI 588
Query: 304 FDLK 307
D K
Sbjct: 589 KDAK 592
>sp|Q9KA72|DPO3_BACHD DNA polymerase III PolC-type OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=polC PE=3 SV=1
Length = 1433
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 20/179 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVH--GITTDMVC 186
+VFD+ETTG S +IIE+A + GE F+ +P + N + GIT DM+
Sbjct: 420 VVFDVETTGLSAVYNKIIELAAVKVKNGEIIDRFERFADPHEPLTNTIIELTGITDDML- 478
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
P +E ++ ++ G + VAHNA SFD+ FL F + N +
Sbjct: 479 -KGQPEVEQVLNEFHAFI-------GDAVLVAHNA-SFDMGFLNTGFQKMGLGEAKNPV- 528
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305
+DTL L R L + ++ L L + + I LV S HRA+ D +L R+ D
Sbjct: 529 IDTLELGRFLYPTLKNH-----RLNTLCKKFDIELV-SHHRAIYDAEATGHLLWRMVKD 581
>sp|O68045|DPO3E_RHOCB DNA polymerase III subunit epsilon-like protein OS=Rhodobacter
capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
GN=dnaQ PE=3 SV=1
Length = 704
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 93/220 (42%), Gaps = 35/220 (15%)
Query: 127 VTAIVFDIETTG-FSRENERIIEIAFQDLLGGE---NSTFQTLVNPKRQVPNAH--VHGI 180
+T +VFD ETTG F + I++IA ++ G F TLVNP R +P A VHGI
Sbjct: 508 LTFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGRPIPAASTAVHGI 567
Query: 181 TTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEV 240
T MV P + + K + VAHNA FD+ FL R +
Sbjct: 568 TEAMVATA---------PAIAEVGRRFHKFAEGAVLVAHNA-PFDLEFL----RRKELLI 613
Query: 241 PNNW--LFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSA-HRAMADVNCLSL 297
N+ +DT+ L+ + + + SL AL GI + A H A+ D +
Sbjct: 614 GKNFDNPVLDTVLLSAVVFGAAEGH-----SLDALTHRLGITIPEEARHTALGDTVATAE 668
Query: 298 ILQRLTFDLKLSLCDLIERGFTPSDLINPKKKKKSKLVSN 337
RL LK RG T + + +K +L+ +
Sbjct: 669 AFLRLLPALK-------ARGLTTFGAVLTEVRKHGRLMRD 701
>sp|O67074|DPO3E_AQUAE DNA polymerase III subunit epsilon OS=Aquifex aeolicus (strain VF5)
GN=dnaQ PE=3 SV=1
Length = 202
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 28/186 (15%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGG-ENSTFQTLVNPKRQVPN--AHVHGITTDM 184
T +V D+E TGF E +I++A + GG F TLV P +P + GIT M
Sbjct: 18 TFVVIDLEATGFDVEKSEVIDLAAVRVEGGIITEKFSTLVYPGYFIPERIKKLTGITNAM 77
Query: 185 VCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRC----SYEV 240
+ P +E+++P L +V G + V H D+ F IN++++ +
Sbjct: 78 LVGQ--PTIEEVLPEFLEFV-------GDNIVVGHFVEQ-DIKF-INKYTKQYRGKKFRN 126
Query: 241 PNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQ 300
P+ + TL LAR++ K SL+ + E +G G HRA+ D + I
Sbjct: 127 PS----LCTLKLARKVFPG-----LKKYSLKEIAENFGFETNG-VHRALKDATLTAEIFI 176
Query: 301 RLTFDL 306
++ +L
Sbjct: 177 KILEEL 182
>sp|Q9ZHF6|DPO3_THEMA DNA polymerase III PolC-type OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=polC PE=1 SV=1
Length = 1367
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 32/213 (15%)
Query: 102 ISKIQRIQHY---DIEQIIAENKDLAKL--VTAIVFDIETTGFSRENERIIEIAFQDLLG 156
I I I+ Y D+E +I D + T +V D ETTG + + IIEI + G
Sbjct: 326 IKPIFGIEAYLVSDVEPVIRNLSDDSTFGDATFVVLDFETTGLDPQVDEIIEIGAVKIQG 385
Query: 157 GE-NSTFQTLVNPKRQVP--NAHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQKPGGY 213
G+ + TL+ P R++ ++ + GIT +M+ + +E+++P L +++
Sbjct: 386 GQIVDEYHTLIKPSREISRKSSEITGITQEML--ENKRSIEEVLPEFLGFLEDS------ 437
Query: 214 ILFVAHNARSFDVPFL---INEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSL 270
+ VAHNA +FD FL I + +E P ++DTL LA+ L+K +L S V
Sbjct: 438 -IIVAHNA-NFDYRFLRLWIKKVMGLDWERP----YIDTLALAKSLLKLRSYSLDSVVEK 491
Query: 271 QALREYYGIPLVGSAHRAMADVNCLSLILQRLT 303
L + HRA+ D + + R
Sbjct: 492 LGLGPF-------RHHRALDDARVTAQVFLRFV 517
>sp|Q38W73|DPO3_LACSS DNA polymerase III PolC-type OS=Lactobacillus sakei subsp. sakei
(strain 23K) GN=polC PE=3 SV=1
Length = 1446
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 20/176 (11%)
Query: 130 IVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVP--NAHVHGITTDMVC 186
++FD+ETTG S + IIE+A + GE ++F ++P+R + + IT +MV
Sbjct: 426 VIFDVETTGLSAVYDSIIELAAVKMRDGEVVASFDEFIDPERPLSAFTTQLTSITNEMVH 485
Query: 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLF 246
+ +++ + + G + HN SFD+ FL + R ++ +N +
Sbjct: 486 G--AKKEAEVLAMFKEFT-------GDAVLAGHNV-SFDMGFLNAGYERNDIDLIDNPV- 534
Query: 247 MDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRL 302
+DTL L+R L ++ L +L + Y I L HRA AD +L +L
Sbjct: 535 IDTLELSRMLHPEYKNH-----KLDSLTKRYKINL-EHHHRANADAESTGYLLYKL 584
>sp|Q1WUF9|DPO3_LACS1 DNA polymerase III PolC-type OS=Lactobacillus salivarius (strain
UCC118) GN=polC PE=3 SV=1
Length = 1444
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 16/134 (11%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVH--GITTD 183
T ++FD ETTG S + +++IE+A + G TF+ ++P + ++ IT D
Sbjct: 424 ATYVIFDTETTGLSAQYDKVIELAAVKMEKGNVIDTFEEFIDPGHPLSQTTINLTSITDD 483
Query: 184 MVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYE-VPN 242
MV E++ + + K + V HNA +FDV F+ + R + E +
Sbjct: 484 MVRGS--KSEEEVFRLFKEFCKD-------CIIVGHNA-TFDVDFMNTGYERHNMEMIQE 533
Query: 243 NWLFMDTLTLAREL 256
W+ DTL LAR L
Sbjct: 534 PWI--DTLPLARYL 545
>sp|Q8DRA5|DPO3_STRR6 DNA polymerase III PolC-type OS=Streptococcus pneumoniae (strain
ATCC BAA-255 / R6) GN=polC PE=3 SV=1
Length = 1463
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 106/246 (43%), Gaps = 50/246 (20%)
Query: 111 YDIEQIIAENK----------DLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN- 159
Y IE I E++ DL++ T +VFD+ETTG S +I++A + G
Sbjct: 398 YGIEANIVEDRVPIVYNEVEMDLSE-ATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVI 456
Query: 160 STFQTLVNPKRQVP--NAHVHGITTDMV--CKPDVPRMEDLIPILLHYVKSRQKPGGYIL 215
+ F +NP + + GIT D V KP +E ++ + K +
Sbjct: 457 AEFDEFINPGHPLSAFTTELTGITDDHVKNAKP----LEQVLQEFQEFCKD-------TV 505
Query: 216 FVAHNARSFDVPFLINEFSRCSYEVPN-NWLFMDTLTLARELMKSGGSNLPSKVSLQALR 274
VAHNA +FDV F+ + R +++P + +DTL AR L + L L
Sbjct: 506 LVAHNA-TFDVGFMNANYER--HDLPKISQPVIDTLEFARNLYPE-----YKRHGLGPLT 557
Query: 275 EYYGIPLVGSAHRAMADVNCLSLILQRLTFDL------KLSLCDLIERGFTPSDLINPKK 328
+ +G+ L H MA+ + + RL F K + DL DLI+P
Sbjct: 558 KRFGVAL---EHHHMANYDAEA--TGRLLFIFIKEVAEKHGVTDLARLNI---DLISPDS 609
Query: 329 KKKSKL 334
KK+++
Sbjct: 610 YKKARI 615
>sp|Q04MH6|DPO3_STRP2 DNA polymerase III PolC-type OS=Streptococcus pneumoniae serotype 2
(strain D39 / NCTC 7466) GN=polC PE=3 SV=1
Length = 1463
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 106/246 (43%), Gaps = 50/246 (20%)
Query: 111 YDIEQIIAENK----------DLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN- 159
Y IE I E++ DL++ T +VFD+ETTG S +I++A + G
Sbjct: 398 YGIEANIVEDRVPIVYNEVEMDLSE-ATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVI 456
Query: 160 STFQTLVNPKRQVP--NAHVHGITTDMV--CKPDVPRMEDLIPILLHYVKSRQKPGGYIL 215
+ F +NP + + GIT D V KP +E ++ + K +
Sbjct: 457 AEFDEFINPGHPLSAFTTELTGITDDHVKNAKP----LEQVLQEFQEFCKD-------TV 505
Query: 216 FVAHNARSFDVPFLINEFSRCSYEVPN-NWLFMDTLTLARELMKSGGSNLPSKVSLQALR 274
VAHNA +FDV F+ + R +++P + +DTL AR L + L L
Sbjct: 506 LVAHNA-TFDVGFMNANYER--HDLPKISQPVIDTLEFARNLYPE-----YKRHGLGPLT 557
Query: 275 EYYGIPLVGSAHRAMADVNCLSLILQRLTFDL------KLSLCDLIERGFTPSDLINPKK 328
+ +G+ L H MA+ + + RL F K + DL DLI+P
Sbjct: 558 KRFGVAL---EHHHMANYDAEA--TGRLLFIFIKEVAEKHGVTDLARLNI---DLISPDS 609
Query: 329 KKKSKL 334
KK+++
Sbjct: 610 YKKARI 615
>sp|Q038M0|DPO3_LACC3 DNA polymerase III PolC-type OS=Lactobacillus casei (strain ATCC
334) GN=polC PE=3 SV=1
Length = 1444
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 25/189 (13%)
Query: 119 ENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHV 177
E +DLA +VFD+ETTG S +++IE+A + G+ F+ +++P + +
Sbjct: 412 EPRDLAS-AEYVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQFEEMIDPGFPLSELTI 470
Query: 178 H--GITTDMV--CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEF 233
+ IT DMV K +V D+ + + + V HN +FDV FL N +
Sbjct: 471 NLTHITDDMVHGSKSEV----DVFKLFQQFCDG-------AIMVGHNV-TFDVGFLDNGY 518
Query: 234 SRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVN 293
R +N + +DTL L+R L ++ L L + Y + L HRA AD
Sbjct: 519 ERHGLADIDNPV-IDTLELSRMLHPERKNH-----KLDTLAKQYKVSL-EHHHRANADAE 571
Query: 294 CLSLILQRL 302
+L L
Sbjct: 572 ATGYLLYAL 580
>sp|Q97SQ2|DPO3_STRPN DNA polymerase III PolC-type OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=polC PE=3 SV=1
Length = 1463
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 116/286 (40%), Gaps = 47/286 (16%)
Query: 61 RWSRRRITTGTEGSKKTIQSHKLKNIKFEATSTTINVNKTEISKIQRIQHYDIEQIIAEN 120
+W + + G+ ++ H K K + + I + ++E ++E
Sbjct: 365 KWGHKAVAITDHGNVQSF-PHGYKAAKKAGIQLIYGMEANIVEDRVPIVYNEVEMDLSE- 422
Query: 121 KDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVP--NAHV 177
T +VFD+ETTG S +I++A + G + F +NP + +
Sbjct: 423 ------ATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAEFDEFINPGHPLSAFTTEL 476
Query: 178 HGITTDMV--CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSR 235
GIT D V KP +E ++ + K + VAHNA +FDV F+ + R
Sbjct: 477 TGITDDHVKNAKP----LEQVLQEFQEFCKD-------TVLVAHNA-TFDVGFMNANYER 524
Query: 236 CSYEVPN-NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNC 294
+++P + +DTL AR L + L L + +G+ L H MA+ +
Sbjct: 525 --HDLPKISQPVIDTLEFARNLYPE-----YKRHGLGPLTKRFGVAL---EHHHMANYDA 574
Query: 295 LSLILQRLTFDL------KLSLCDLIERGFTPSDLINPKKKKKSKL 334
+ RL F K + DL DLI+P KK+++
Sbjct: 575 EA--TGRLLFIFIKEVAEKHGVTDLARLNI---DLISPDSYKKARI 615
>sp|Q48R90|DPO3_STRPM DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M28
(strain MGAS6180) GN=polC PE=3 SV=1
Length = 1465
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVHGITTDMV 185
T +VFD+ETTG S N +I+IA + G F ++P + TT++
Sbjct: 425 ATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLS-----AFTTELT 479
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN-NW 244
D ++D P L+ +K+ Q + VAHNA SFDV F+ + R +++P
Sbjct: 480 GITD-KHLQDAKP-LVTVLKAFQDFCKDSILVAHNA-SFDVGFMNANYER--HDLPKITQ 534
Query: 245 LFMDTLTLAREL 256
+DTL AR L
Sbjct: 535 PVIDTLEFARNL 546
>sp|Q1JEV4|DPO3_STRPD DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M2
(strain MGAS10270) GN=polC PE=3 SV=1
Length = 1465
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVHGITTDMV 185
T +VFD+ETTG S N +I+IA + G F ++P + TT++
Sbjct: 425 ATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLS-----AFTTELT 479
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN-NW 244
D ++D P L+ +K+ Q + VAHNA SFDV F+ + R +++P
Sbjct: 480 GITD-KHLQDAKP-LVTVLKAFQDFCKDSILVAHNA-SFDVGFMNANYER--HDLPKITQ 534
Query: 245 LFMDTLTLAREL 256
+DTL AR L
Sbjct: 535 PVIDTLEFARNL 546
>sp|Q9CDT7|DPO3_LACLA DNA polymerase III PolC-type OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=polC PE=3 SV=1
Length = 1638
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 18/134 (13%)
Query: 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVP--NAHVHGITTDM 184
T +VFD+ETTG S + +I+IA + G F +NP ++ + GIT D
Sbjct: 595 TYVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDEFDEFINPGYRLSEFTTELTGITDDH 654
Query: 185 V--CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN 242
V KP L +L + K + G IL VAHNA +FDV F+ +SR +
Sbjct: 655 VKNAKP-------LYEVLTKFQKFCE---GTIL-VAHNA-TFDVGFMNMNYSRNGLPIIT 702
Query: 243 NWLFMDTLTLAREL 256
+ +DTL AR L
Sbjct: 703 QPV-VDTLEFARNL 715
>sp|Q9R1A9|TREX2_MOUSE Three prime repair exonuclease 2 OS=Mus musculus GN=Trex2 PE=2 SV=1
Length = 236
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 206 SRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMK--SGGSN 263
SRQ+ G I VAHN +D P L E R +P + + +DTL R L + S G+
Sbjct: 106 SRQE--GPICLVAHNGFDYDFPLLCTELQRLGAHLPQDTVCLDTLPALRGLDRAHSHGTR 163
Query: 264 LPSK--VSLQALREYYGIPLVGSAHRAMADVNCLSLIL 299
+ SL +L Y +AH A DV+ L LI
Sbjct: 164 AQGRKSYSLASLFHRYFQAEPSAAHSAEGDVHTLLLIF 201
>sp|P0DA77|DPO3_STRPQ DNA polymerase III polC-type OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=polC PE=3 SV=1
Length = 1465
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVHGITTDMV 185
T +VFD+ETTG S N +I+IA + G F ++P + TT++
Sbjct: 425 ATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLS-----AFTTELT 479
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN-NW 244
D ++ P L+ +K+ Q + VAHNA SFDV F+ + R +++P
Sbjct: 480 GITD-KHLQGAKP-LVTVLKAFQDFCKDSILVAHNA-SFDVGFMNANYER--HDLPKITQ 534
Query: 245 LFMDTLTLAREL 256
+DTL AR L
Sbjct: 535 PVIDTLEFARNL 546
>sp|P0DA76|DPO3_STRP3 DNA polymerase III polC-type OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=polC PE=3 SV=1
Length = 1465
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVHGITTDMV 185
T +VFD+ETTG S N +I+IA + G F ++P + TT++
Sbjct: 425 ATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLS-----AFTTELT 479
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN-NW 244
D ++ P L+ +K+ Q + VAHNA SFDV F+ + R +++P
Sbjct: 480 GITD-KHLQGAKP-LVTVLKAFQDFCKDSILVAHNA-SFDVGFMNANYER--HDLPKITQ 534
Query: 245 LFMDTLTLAREL 256
+DTL AR L
Sbjct: 535 PVIDTLEFARNL 546
>sp|Q8CP71|DING_STAES Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=dinG PE=3 SV=1
Length = 902
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 22/170 (12%)
Query: 126 LVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVHGITT-- 182
+ T V D+ETTG + + II+I + + T+ +++ ++P + +T+
Sbjct: 3 IATFAVVDLETTGNQLDYDEIIQIGITFVRQNQVIDTYHSMIRTDLEIP-PFIQALTSIE 61
Query: 183 -DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
+M+ + P ++ + +K +FVAHN SFD+ F+ F +C+ +
Sbjct: 62 EEMLVQA--PYFNEVADDIYQLIKD-------CVFVAHNI-SFDLNFIKKAFEKCNIQFK 111
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
+ MDTL L + + S L AL E + IPL +AHRA D
Sbjct: 112 PKRV-MDTLELFKIAFPTDKS-----YQLSALAESHHIPL-NNAHRADED 154
>sp|Q5HP88|DING_STAEQ Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=dinG PE=3
SV=1
Length = 902
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 22/170 (12%)
Query: 126 LVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPNAHVHGITT-- 182
+ T V D+ETTG + + II+I + + T+ +++ ++P + +T+
Sbjct: 3 IATFAVVDLETTGNQLDYDEIIQIGITFVRQNQVIDTYHSMIRTDLEIP-PFIQALTSIE 61
Query: 183 -DMVCKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP 241
+M+ + P ++ + +K +FVAHN SFD+ F+ F +C+ +
Sbjct: 62 EEMLVQA--PYFNEVADDIYQLIKD-------CVFVAHNI-SFDLNFIKKAFEKCNIQFK 111
Query: 242 NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMAD 291
+ MDTL L + + S L AL E + IPL +AHRA D
Sbjct: 112 PKRV-MDTLELFKIAFPTDKS-----YQLSALAESHHIPL-NNAHRADED 154
>sp|Q1J4M0|DPO3_STRPF DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M4
(strain MGAS10750) GN=polC PE=3 SV=1
Length = 1465
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVHGITTDMV 185
T +VFD+ETTG S N +I+IA + G F ++P + TT++
Sbjct: 425 ATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLS-----AFTTELT 479
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN-NW 244
D ++ P L+ +K+ Q + VAHNA SFDV F+ + R +++P
Sbjct: 480 GITD-KHLQGAKP-LVTVLKAFQDFCKDSILVAHNA-SFDVGFMNANYER--HDLPKITQ 534
Query: 245 LFMDTLTLAREL 256
+DTL AR L
Sbjct: 535 PVIDTLEFARNL 546
>sp|A2RGI3|DPO3_STRPG DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M5
(strain Manfredo) GN=polC PE=3 SV=1
Length = 1465
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVHGITTDMV 185
T +VFD+ETTG S N +I+IA + G F ++P + TT++
Sbjct: 425 ATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLS-----AFTTELT 479
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN-NW 244
D ++ P L+ +K+ Q + VAHNA SFDV F+ + R +++P
Sbjct: 480 GITD-KHLQGAKP-LVTVLKAFQDFCKDSILVAHNA-SFDVGFMNANYER--HDLPKITQ 534
Query: 245 LFMDTLTLAREL 256
+DTL AR L
Sbjct: 535 PVIDTLEFARNL 546
>sp|Q1JJW3|DPO3_STRPC DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M12
(strain MGAS9429) GN=polC PE=3 SV=1
Length = 1465
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGE-NSTFQTLVNPKRQVPNAHVHGITTDMV 185
T +VFD+ETTG S N +I+IA + G F ++P + TT++
Sbjct: 425 ATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLS-----AFTTELT 479
Query: 186 CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN-NW 244
D ++ P L+ +K+ Q + VAHNA SFDV F+ + R +++P
Sbjct: 480 GITD-KHLQGAKP-LVTVLKAFQDFCKDSILVAHNA-SFDVGFMNANYER--HDLPKITQ 534
Query: 245 LFMDTLTLAREL 256
+DTL AR L
Sbjct: 535 PVIDTLEFARNL 546
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,920,485
Number of Sequences: 539616
Number of extensions: 5062807
Number of successful extensions: 12325
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 12273
Number of HSP's gapped (non-prelim): 110
length of query: 339
length of database: 191,569,459
effective HSP length: 118
effective length of query: 221
effective length of database: 127,894,771
effective search space: 28264744391
effective search space used: 28264744391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)