Query 019538
Match_columns 339
No_of_seqs 225 out of 1374
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1j_A POLIII, DNA polymerase 100.0 4.6E-32 1.6E-36 239.5 16.8 171 118-307 4-177 (186)
2 2gui_A DNA polymerase III epsi 100.0 1.2E-31 4E-36 237.9 18.5 165 127-307 9-186 (194)
3 1w0h_A 3'-5' exonuclease ERI1; 100.0 4.5E-31 1.5E-35 235.6 18.8 174 127-307 10-196 (204)
4 3mxm_B Three prime repair exon 100.0 2.9E-31 9.9E-36 244.1 14.1 173 127-306 12-215 (242)
5 1y97_A Three prime repair exon 100.0 4.7E-30 1.6E-34 234.5 17.4 175 127-306 10-210 (238)
6 3u3y_B Three prime repair exon 100.0 2.7E-30 9.1E-35 245.1 15.6 172 127-306 12-215 (314)
7 1zbh_A 3'-5' exonuclease ERI1; 100.0 8.1E-29 2.8E-33 234.5 20.7 183 127-316 78-274 (299)
8 2f96_A Ribonuclease T; RNAse, 100.0 3.2E-29 1.1E-33 227.4 16.8 174 122-307 25-214 (224)
9 3v9w_A Ribonuclease T; DEDD nu 100.0 1.4E-28 4.7E-33 224.7 18.4 173 123-307 34-222 (235)
10 2xri_A ERI1 exoribonuclease 3; 100.0 1.6E-28 5.3E-33 223.1 16.6 166 127-306 31-214 (224)
11 1zbu_A ERI-1 homolog, 3'-5' ex 100.0 3.2E-28 1.1E-32 234.8 17.1 184 127-317 128-325 (349)
12 3cg7_A CRN-4, cell death-relat 100.0 3.2E-27 1.1E-31 224.4 19.2 187 127-317 19-221 (308)
13 1wlj_A Interferon stimulated g 99.9 1.2E-27 4.2E-32 211.7 9.5 160 127-307 5-170 (189)
14 2igi_A Oligoribonuclease; RNAs 99.9 2.9E-27 1E-31 207.2 11.3 158 127-306 5-177 (180)
15 3tr8_A Oligoribonuclease; tran 99.9 1.6E-26 5.5E-31 204.3 12.0 158 127-306 9-181 (186)
16 2qxf_A Exodeoxyribonuclease I; 99.9 6.9E-26 2.3E-30 226.6 17.7 170 127-306 9-201 (482)
17 2gbz_A Oligoribonuclease; ORN, 99.9 1.6E-25 5.4E-30 199.0 11.0 159 127-307 9-182 (194)
18 2kfn_A Klenow fragment of DNA 99.2 1.1E-10 3.8E-15 120.0 15.0 158 127-318 26-207 (605)
19 1x9m_A DNA polymerase; DNA plo 98.9 8.8E-10 3E-14 115.0 8.0 141 129-307 1-184 (698)
20 4hec_A Putative uncharacterize 98.9 1.4E-08 5E-13 89.2 11.2 153 127-306 22-182 (190)
21 1qht_A Protein (DNA polymerase 98.8 5.5E-08 1.9E-12 102.6 15.4 150 127-303 135-327 (775)
22 4gmj_B CCR4-NOT transcription 98.7 8.3E-08 2.8E-12 89.5 12.4 180 113-306 20-245 (285)
23 1noy_A Protein (DNA polymerase 98.5 1.2E-06 3.9E-11 85.3 14.6 163 127-302 106-335 (388)
24 2d5r_A CCR4-NOT transcription 98.4 5.8E-06 2E-10 75.7 14.9 166 127-306 24-235 (252)
25 3iay_A DNA polymerase delta ca 98.4 6.9E-06 2.4E-10 88.0 17.4 156 127-302 249-465 (919)
26 4dfk_A DNA polymerase I, therm 98.3 2.3E-07 7.7E-12 94.0 4.3 131 128-319 11-143 (540)
27 2p51_A SPCC18.06C protein; DED 98.3 1.3E-05 4.3E-10 75.9 15.9 181 112-306 30-256 (333)
28 1uoc_A POP2; hydrolase, DEDD n 98.3 1.9E-05 6.6E-10 73.5 16.9 189 111-306 22-265 (289)
29 2gv9_A DNA polymerase; polymer 98.2 1.6E-05 5.5E-10 87.1 15.1 161 127-302 320-550 (1193)
30 3pv8_A DNA polymerase I; DNA p 98.2 1.6E-06 5.5E-11 88.6 6.4 145 128-318 30-194 (592)
31 1s5j_A DNA polymerase I; repli 98.0 3.6E-05 1.2E-09 81.9 13.1 157 127-299 190-386 (847)
32 3qex_A DNA polymerase, GP43; d 97.9 8.6E-05 2.9E-09 79.1 13.1 166 127-301 108-337 (903)
33 1yt3_A Ribonuclease D, RNAse D 97.8 0.00011 3.6E-09 71.0 11.4 134 127-307 22-171 (375)
34 3saf_A Exosome component 10; e 97.8 0.00016 5.6E-09 71.0 12.4 134 127-307 129-278 (428)
35 3k59_A POL II, DNA polymerase 97.7 0.00044 1.5E-08 72.8 15.4 150 127-302 153-349 (786)
36 2hbj_A Exosome complex exonucl 97.6 0.00058 2E-08 66.7 13.2 134 127-307 106-255 (410)
37 2e6m_A Werner syndrome ATP-dep 97.3 0.0002 6.8E-09 63.0 5.4 92 199-308 87-197 (208)
38 2py5_A DNA polymerase; protein 97.0 0.003 1E-07 64.3 10.6 127 127-304 6-182 (575)
39 3d45_A Poly(A)-specific ribonu 96.7 0.006 2E-07 61.1 9.9 86 213-307 276-393 (507)
40 3cym_A Uncharacterized protein 96.6 0.032 1.1E-06 54.8 14.4 134 128-307 39-188 (440)
41 2a1r_A Poly(A)-specific ribonu 96.0 0.033 1.1E-06 54.6 10.4 102 190-307 267-398 (430)
42 1vk0_A Hypothetical protein; h 95.3 0.034 1.2E-06 49.0 6.9 92 199-305 99-206 (206)
43 1bgx_T TAQ DNA polymerase; DNA 94.7 0.031 1.1E-06 59.2 5.9 92 198-317 340-433 (832)
44 3ikm_A DNA polymerase subunit 40.1 3.4 0.00012 44.6 -1.9 35 214-253 195-229 (1172)
45 3d45_A Poly(A)-specific ribonu 37.9 35 0.0012 33.6 5.2 43 127-169 24-97 (507)
46 2a1r_A Poly(A)-specific ribonu 35.8 67 0.0023 30.9 6.7 43 127-169 22-95 (430)
47 1clv_I Protein (alpha-amylase 23.9 9.5 0.00032 22.2 -1.0 18 23-40 15-32 (32)
No 1
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.98 E-value=4.6e-32 Score=239.52 Aligned_cols=171 Identities=29% Similarity=0.498 Sum_probs=146.7
Q ss_pred hhccCccCCCcEEEEEEecCCCCCCCCcEEEEEEEEEcCCee-eeEEEEEcCCCCCCC--ccccCCcHHhhcCCCCCCHH
Q 019538 118 AENKDLAKLVTAIVFDIETTGFSRENERIIEIAFQDLLGGEN-STFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRME 194 (339)
Q Consensus 118 ~~~~~l~~~~~~vviDiETTGl~p~~~~IIEIgav~v~~g~i-~~f~~lV~P~~~i~~--~~itGIt~e~l~~~~ap~~~ 194 (339)
+.+.++.+ .++|+||+||||++|..++|||||+|.+++|.+ +.|+++|+|..++++ +++|||++++++ ++|++.
T Consensus 4 ~~~~~l~~-~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~--~~~~~~ 80 (186)
T 2p1j_A 4 SDDSTFGD-ATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLE--NKRSIE 80 (186)
T ss_dssp ----------CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHT--TCCBHH
T ss_pred CcCCcCcC-CCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHh--cCCCHH
Confidence 34455665 589999999999999889999999999988876 899999999998887 899999999999 789999
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCCCceeeHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 019538 195 DLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALR 274 (339)
Q Consensus 195 evl~~~~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~ 274 (339)
+|+.+|.+|+.+ .++||||+ .||+.||.+++.++|+.++. +.++||+.+++.++ . .+ +++|++|+
T Consensus 81 ~v~~~~~~~l~~-------~~lv~hn~-~fD~~~L~~~~~~~g~~~~~-~~~iDt~~l~~~~~-~----~~-~~~L~~l~ 145 (186)
T 2p1j_A 81 EVLPEFLGFLED-------SIIVAHNA-NFDYRFLRLWIKKVMGLDWE-RPYIDTLALAKSLL-K----LR-SYSLDSVV 145 (186)
T ss_dssp HHHHHHHHHSSS-------CEEEETTH-HHHHHHHHHHHHHHHCCCCC-CCEEEHHHHHHHHT-C----CS-CCSHHHHH
T ss_pred HHHHHHHHHHCC-------CEEEEECc-HHHHHHHHHHHHHcCCCCCC-CCEEeHHHHHHHHh-h----cC-CCCHHHHH
Confidence 999999999974 48999999 99999999999999988653 47899999999887 2 23 89999999
Q ss_pred HHhCCCCCCCCCChHHHHHHHHHHHHHHHHhhc
Q 019538 275 EYYGIPLVGSAHRAMADVNCLSLILQRLTFDLK 307 (339)
Q Consensus 275 ~~~gI~~~~~aH~Al~DA~~ta~L~~~l~~~l~ 307 (339)
++||++.. .+|+|++||.+|++||.++..+.+
T Consensus 146 ~~~gi~~~-~~H~Al~Da~~t~~l~~~l~~~~~ 177 (186)
T 2p1j_A 146 EKLGLGPF-RHHRALDDARVTAQVFLRFVEMMK 177 (186)
T ss_dssp HHTTCCST-TCCHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHcCCCCC-CCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 589999999999999999987654
No 2
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.98 E-value=1.2e-31 Score=237.94 Aligned_cols=165 Identities=30% Similarity=0.489 Sum_probs=146.3
Q ss_pred CcEEEEEEecCCCCC-----CCCcEEEEEEEEEcCCee--eeEEEEEcCCCCCCC--ccccCCcHHhhcCCCCCCHHHHH
Q 019538 127 VTAIVFDIETTGFSR-----ENERIIEIAFQDLLGGEN--STFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLI 197 (339)
Q Consensus 127 ~~~vviDiETTGl~p-----~~~~IIEIgav~v~~g~i--~~f~~lV~P~~~i~~--~~itGIt~e~l~~~~ap~~~evl 197 (339)
+++|+||+||||+++ ..++|||||+|.+++|.+ +.|+++|+|..++++ +++|||++++++ ++|++.+|+
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~~~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~--~~~~~~~v~ 86 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLL--DKPTFAEVA 86 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHT--TSCCHHHHH
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeEeccEEEEEECcCCcCCHHHHHhhCcCHHHHh--CCCCHHHHH
Confidence 589999999999998 469999999999998876 479999999998888 899999999999 899999999
Q ss_pred HHHHHHHHhcCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCC-C--CceeeHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 019538 198 PILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN-N--WLFMDTLTLARELMKSGGSNLPSKVSLQALR 274 (339)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~-~--~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~ 274 (339)
.+|.+|+.+ .++||||+ .||+.||.+++.++|+..|. . ..++||+.+++.++|.. +++|++|+
T Consensus 87 ~~~~~~l~~-------~~lv~hn~-~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~------~~~L~~l~ 152 (194)
T 2gui_A 87 DEFMDYIRG-------AELVIHNA-AFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGK------RNSLDALC 152 (194)
T ss_dssp HHHHHHHTT-------SEEEETTH-HHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTS------CCSHHHHH
T ss_pred HHHHHHHCC-------CeEEEEch-HHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCC------CCCHHHHH
Confidence 999999974 38999999 99999999999999998662 2 47999999999988753 67999999
Q ss_pred HHhCCCCCC-CCCChHHHHHHHHHHHHHHHHhhc
Q 019538 275 EYYGIPLVG-SAHRAMADVNCLSLILQRLTFDLK 307 (339)
Q Consensus 275 ~~~gI~~~~-~aH~Al~DA~~ta~L~~~l~~~l~ 307 (339)
++||++..+ .+|+|++||.+|++||.++..+..
T Consensus 153 ~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 186 (194)
T 2gui_A 153 ARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 (194)
T ss_dssp HHTTCCCTTCSSCCHHHHHHHHHHHHHHHTC---
T ss_pred HHcCcCCCCCCCCChHHHHHHHHHHHHHHHhccc
Confidence 999999876 489999999999999999887543
No 3
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.97 E-value=4.5e-31 Score=235.62 Aligned_cols=174 Identities=21% Similarity=0.226 Sum_probs=149.9
Q ss_pred CcEEEEEEecCCCCC----CCCcEEEEEEEEEc--CCee-eeEEEEEcCCC--CCCC--ccccCCcHHhhcCCCCCCHHH
Q 019538 127 VTAIVFDIETTGFSR----ENERIIEIAFQDLL--GGEN-STFQTLVNPKR--QVPN--AHVHGITTDMVCKPDVPRMED 195 (339)
Q Consensus 127 ~~~vviDiETTGl~p----~~~~IIEIgav~v~--~g~i-~~f~~lV~P~~--~i~~--~~itGIt~e~l~~~~ap~~~e 195 (339)
.+||+||+||||+++ ..++|||||+|.++ +|++ +.|+++|+|.. ++++ +++|||++++++ ++|++.+
T Consensus 10 ~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~--~~~~~~~ 87 (204)
T 1w0h_A 10 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVD--RADTFPQ 87 (204)
T ss_dssp SEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHH--TSBCHHH
T ss_pred CEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHh--CCCCHHH
Confidence 479999999999986 56899999999996 5665 88999999998 7877 899999999999 8899999
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEECCcchhHH-HHHHHHHhcCCCCCCC-CceeeHHHHHHHHHhcCCCCCCCCCCHHHH
Q 019538 196 LIPILLHYVKSRQKPGGYILFVAHNARSFDVP-FLINEFSRCSYEVPNN-WLFMDTLTLARELMKSGGSNLPSKVSLQAL 273 (339)
Q Consensus 196 vl~~~~~~l~~~~~~~~~~~lV~hN~~~FD~~-fL~~~~~r~gl~~p~~-~~~iDtl~lar~l~~~~~~~l~~~~~L~~L 273 (339)
|+.+|.+|+.+........++||||+ .||+. ||.++|.++|+..|.. ..++||+.+++.+++.. .. +++|++|
T Consensus 88 v~~~~~~~l~~~~~~~~~~~lv~hn~-~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~---~~-~~~L~~l 162 (204)
T 1w0h_A 88 VLKKVIDWMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVP---RS-QTKLTIM 162 (204)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESS-TTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCC---GG-GCSHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEEC-cchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCC---Cc-cchHHHH
Confidence 99999999997531112347999999 99996 9999999999987642 26899999999888642 12 6899999
Q ss_pred HHHhCCCCCCCCCChHHHHHHHHHHHHHHHHhhc
Q 019538 274 REYYGIPLVGSAHRAMADVNCLSLILQRLTFDLK 307 (339)
Q Consensus 274 ~~~~gI~~~~~aH~Al~DA~~ta~L~~~l~~~l~ 307 (339)
++++|++..+.+|+|++||.+|++||.++.+++.
T Consensus 163 ~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 196 (204)
T 1w0h_A 163 LEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGC 196 (204)
T ss_dssp HHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCCCCCccCcHHHHHHHHHHHHHHHHCCC
Confidence 9999999886789999999999999999998754
No 4
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.97 E-value=2.9e-31 Score=244.11 Aligned_cols=173 Identities=20% Similarity=0.304 Sum_probs=145.9
Q ss_pred CcEEEEEEecCCCCCCCCcEEEEEEEEEcCC-------------------ee-eeEEEEEcCCCCCCC--ccccCCcHHh
Q 019538 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGG-------------------EN-STFQTLVNPKRQVPN--AHVHGITTDM 184 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~~~IIEIgav~v~~g-------------------~i-~~f~~lV~P~~~i~~--~~itGIt~e~ 184 (339)
.+||+||+||||+++..++|||||+|.++++ .+ +.|+++|+|..++++ +.+|||++++
T Consensus 12 ~~~vv~D~ETTGl~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt~~~ 91 (242)
T 3mxm_B 12 QTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKAE 91 (242)
T ss_dssp SEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCCHHH
T ss_pred ceEEEEEeecCCCCCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCCHHH
Confidence 5799999999999998999999999999755 34 799999999999988 8999999999
Q ss_pred hcCCCC--CCHH-HHHHHHHHHHHhcCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCC-CCCceeeHHHHHHHHHhcC
Q 019538 185 VCKPDV--PRME-DLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP-NNWLFMDTLTLARELMKSG 260 (339)
Q Consensus 185 l~~~~a--p~~~-evl~~~~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p-~~~~~iDtl~lar~l~~~~ 260 (339)
+. ++ |+++ +|+.+|.+|+.+.. .+.++||||+..||+.||.++|.++|+.++ .++.++||+.+++.++...
T Consensus 92 l~--~~g~p~~~~ev~~~~~~fl~~~~---~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~ 166 (242)
T 3mxm_B 92 LE--VQGRQRFDDNLAILLRAFLQRQP---QPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQAS 166 (242)
T ss_dssp HH--HTTCCCSCHHHHHHHHHHHHTSC---SSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHH
T ss_pred HH--hcCCCchhHHHHHHHHHHHhcCC---CCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhc
Confidence 99 66 8896 99999999998521 226899999328999999999999999875 3457999999999776431
Q ss_pred C----CCCCCCCCHHHHHHH-hCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 019538 261 G----SNLPSKVSLQALREY-YGIPLVGSAHRAMADVNCLSLILQRLTFDL 306 (339)
Q Consensus 261 ~----~~l~~~~~L~~L~~~-~gI~~~~~aH~Al~DA~~ta~L~~~l~~~l 306 (339)
. +..+ +++|++|++. ||++.. .+|+|++||.+|++||.++..++
T Consensus 167 ~p~~~~~~~-~~~L~~l~~~~~gi~~~-~~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 167 SPSGNGSRK-SYSLGSIYTRLYWQAPT-DSHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp CC------C-CCSHHHHHHHHHSSCCS-STTSHHHHHHHHHHHHTSSHHHH
T ss_pred CccccCCCC-CcCHHHHHHHHhCCCCC-CCcChHHHHHHHHHHHHHHHHHH
Confidence 1 2244 9999999966 999987 59999999999999999887653
No 5
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.97 E-value=4.7e-30 Score=234.54 Aligned_cols=175 Identities=23% Similarity=0.377 Sum_probs=144.6
Q ss_pred CcEEEEEEecCCCCCCCCcEEEEEEEEEcCC----------------ee-eeEEEEEcCCCCCCC--ccccCCcHHhhcC
Q 019538 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGG----------------EN-STFQTLVNPKRQVPN--AHVHGITTDMVCK 187 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~~~IIEIgav~v~~g----------------~i-~~f~~lV~P~~~i~~--~~itGIt~e~l~~ 187 (339)
.++|+||+||||+++..++|||||+|.++++ ++ +.|+++|+|..++++ +++||||++++..
T Consensus 10 ~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~ 89 (238)
T 1y97_A 10 ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEGLAR 89 (238)
T ss_dssp SEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHHHHH
T ss_pred CeEEEEEeeCCCcCCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHhCCCHHHHhh
Confidence 4799999999999988899999999999853 44 889999999999888 8999999999942
Q ss_pred CCCCCH-HHHHHHHHHHHHhcCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCCCceeeHHHHHHHHHhcCC-----
Q 019538 188 PDVPRM-EDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGG----- 261 (339)
Q Consensus 188 ~~ap~~-~evl~~~~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iDtl~lar~l~~~~~----- 261 (339)
.++|+| ++++..|.+|+... +++.++||||+..||+.||.++|.++|+.++..+.++||+.+++.++....
T Consensus 90 ~~~p~f~~~v~~~l~~fl~~~---~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~ 166 (238)
T 1y97_A 90 CRKAGFDGAVVRTLQAFLSRQ---AGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRA 166 (238)
T ss_dssp TTCCCSCHHHHHHHHHHHTTS---CSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC------
T ss_pred cCCCccHHHHHHHHHHHHHhC---CCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccC
Confidence 278888 59999999999853 123799999975699999999999999988755679999999999883211
Q ss_pred CCCCCCCCHHHHHH-HhCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 019538 262 SNLPSKVSLQALRE-YYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306 (339)
Q Consensus 262 ~~l~~~~~L~~L~~-~~gI~~~~~aH~Al~DA~~ta~L~~~l~~~l 306 (339)
+... +++|+++++ +||++.. .+|+|++||.+|++||.++..++
T Consensus 167 p~~~-~~~L~~l~~~~~gi~~~-~~H~Al~Da~~ta~l~~~l~~~~ 210 (238)
T 1y97_A 167 RGRQ-GYSLGSLFHRYFRAEPS-AAHSAEGDVHTLLLIFLHRAAEL 210 (238)
T ss_dssp -----CCSHHHHHHHHHSSCCC----CHHHHHHHHHHHHHHTHHHH
T ss_pred CCCC-CCCHHHHHHHHhCCCCc-cCccHHHHHHHHHHHHHHHHHHH
Confidence 2234 899999999 6999987 69999999999999999987654
No 6
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.97 E-value=2.7e-30 Score=245.08 Aligned_cols=172 Identities=20% Similarity=0.308 Sum_probs=146.1
Q ss_pred CcEEEEEEecCCCCCCCCcEEEEEEEEEcCC-------------------ee-eeEEEEEcCCCCCCC--ccccCCcHHh
Q 019538 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGG-------------------EN-STFQTLVNPKRQVPN--AHVHGITTDM 184 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~~~IIEIgav~v~~g-------------------~i-~~f~~lV~P~~~i~~--~~itGIt~e~ 184 (339)
.+|||||+||||+++..++|||||+|.++++ .+ +.|+++|+|..+|++ ++||||+.++
T Consensus 12 ~tfVv~DlETTGL~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~e~ 91 (314)
T 3u3y_B 12 QTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKAE 91 (314)
T ss_dssp SEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCHHH
T ss_pred CCEEEEEEECCCCCCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCHHH
Confidence 4799999999999998999999999999854 23 899999999999988 8999999999
Q ss_pred hcCCCC--CCH-HHHHHHHHHHHHhcCCCCCceEEEEEC-CcchhHHHHHHHHHhcCCCCC-CCCceeeHHHHHHHHHhc
Q 019538 185 VCKPDV--PRM-EDLIPILLHYVKSRQKPGGYILFVAHN-ARSFDVPFLINEFSRCSYEVP-NNWLFMDTLTLARELMKS 259 (339)
Q Consensus 185 l~~~~a--p~~-~evl~~~~~~l~~~~~~~~~~~lV~hN-~~~FD~~fL~~~~~r~gl~~p-~~~~~iDtl~lar~l~~~ 259 (339)
++ ++ |.| ++++.+|.+|+.+.. ...++|||| + .||+.||.++|.++|+.++ ..+.++||+.+.+.+...
T Consensus 92 l~--~aG~P~f~~ev~~~l~~fL~~~~---~~~vLVAHNga-~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~ 165 (314)
T 3u3y_B 92 LE--VQGRQRFDDNLAILLRAFLQRQP---QPCCLVAHNGD-RYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQA 165 (314)
T ss_dssp HH--HTTCCBSCHHHHHHHHHHHHTSC---SSEEEEETTTT-TTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTT
T ss_pred HH--hCCCCCcHHHHHHHHHHHHhcCC---CCcEEEEeCcH-HHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHH
Confidence 99 66 889 799999999998521 236999999 8 9999999999999999875 345789999977755443
Q ss_pred CCCC----CCCCCCHHHHHHH-hCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 019538 260 GGSN----LPSKVSLQALREY-YGIPLVGSAHRAMADVNCLSLILQRLTFDL 306 (339)
Q Consensus 260 ~~~~----l~~~~~L~~L~~~-~gI~~~~~aH~Al~DA~~ta~L~~~l~~~l 306 (339)
..+. .. +++|++|+++ ||++.. .+|+|++||.+|++||+++.+++
T Consensus 166 ~~P~~~~~~~-~~~L~~L~~~l~gi~~~-~aHrAl~DA~ata~lf~~l~~~~ 215 (314)
T 3u3y_B 166 SSPSGNGSRK-SYSLGSIYTRLYWQAPT-DSHTAEGHVLTLLSICQWKPQAL 215 (314)
T ss_dssp C-------CC-CCSHHHHHHHHHSSCCS-CSSSHHHHHHHHHHHHHSSHHHH
T ss_pred hCccccccCC-CCCHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 2222 24 8999999998 999987 69999999999999999887754
No 7
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.96 E-value=8.1e-29 Score=234.46 Aligned_cols=183 Identities=20% Similarity=0.223 Sum_probs=151.8
Q ss_pred CcEEEEEEecCCCC----CCCCcEEEEEEEEEcC--Cee-eeEEEEEcCCC--CCCC--ccccCCcHHhhcCCCCCCHHH
Q 019538 127 VTAIVFDIETTGFS----RENERIIEIAFQDLLG--GEN-STFQTLVNPKR--QVPN--AHVHGITTDMVCKPDVPRMED 195 (339)
Q Consensus 127 ~~~vviDiETTGl~----p~~~~IIEIgav~v~~--g~i-~~f~~lV~P~~--~i~~--~~itGIt~e~l~~~~ap~~~e 195 (339)
..||+||+||||++ +..++|||||+|.+++ |++ +.|+++|+|.. ++++ +.+|||++++++ ++|++.+
T Consensus 78 ~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~--~ap~~~e 155 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVD--RADTFPQ 155 (299)
T ss_dssp SEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHH--TSBCHHH
T ss_pred ceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHh--cCCCHHH
Confidence 47999999999997 4678999999999984 455 89999999998 7877 899999999999 8999999
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEECCcchhHH-HHHHHHHhcCCCCCC-CCceeeHHHHHHHHHhcCCCCCCCCCCHHHH
Q 019538 196 LIPILLHYVKSRQKPGGYILFVAHNARSFDVP-FLINEFSRCSYEVPN-NWLFMDTLTLARELMKSGGSNLPSKVSLQAL 273 (339)
Q Consensus 196 vl~~~~~~l~~~~~~~~~~~lV~hN~~~FD~~-fL~~~~~r~gl~~p~-~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L 273 (339)
|+.+|.+|+.+.....+..++||||+ .||+. ||..+|.++|+..|. ...++|++.+++.+++... . .++|.+|
T Consensus 156 vl~~f~~~l~~~~~~~~~~~lVahn~-~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~---~-~~~L~~l 230 (299)
T 1zbh_A 156 VLKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR---S-QTKLTIM 230 (299)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG---G-GCSHHHH
T ss_pred HHHHHHHHHhhcccCCCCcEEEEEeC-HHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCC---C-CccHHHH
Confidence 99999999986311112258999999 99999 999999999988763 2368999988887764210 1 4899999
Q ss_pred HHHhCCCCCCCCCChHHHHHHHHHHHHHHHHhhc-cCHHHHHHh
Q 019538 274 REYYGIPLVGSAHRAMADVNCLSLILQRLTFDLK-LSLCDLIER 316 (339)
Q Consensus 274 ~~~~gI~~~~~aH~Al~DA~~ta~L~~~l~~~l~-~tl~~L~~~ 316 (339)
+++||++..+.+|+|++||.+|++||.++..++. .++.+|+..
T Consensus 231 ~~~~gi~~~g~~H~Al~DA~ata~l~~~l~~~~~~~~~~~l~~~ 274 (299)
T 1zbh_A 231 LEKLGMDYDGRPNCGLDDSKNIARIAVRMLQDGCELRINEKMHA 274 (299)
T ss_dssp HHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEET
T ss_pred HHHcCCCCCCCCCChHHHHHHHHHHHHHHHHhCCcCChhhhhhc
Confidence 9999999987789999999999999999998764 444444443
No 8
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.96 E-value=3.2e-29 Score=227.44 Aligned_cols=174 Identities=22% Similarity=0.270 Sum_probs=145.7
Q ss_pred CccCCCcEEEEEEecCCCCCCCCcEEEEEEEEEc---CCee---eeEEEEEcC--CCCCCC--ccccCCcHHh-hcCCCC
Q 019538 122 DLAKLVTAIVFDIETTGFSRENERIIEIAFQDLL---GGEN---STFQTLVNP--KRQVPN--AHVHGITTDM-VCKPDV 190 (339)
Q Consensus 122 ~l~~~~~~vviDiETTGl~p~~~~IIEIgav~v~---~g~i---~~f~~lV~P--~~~i~~--~~itGIt~e~-l~~~~a 190 (339)
++.+ .++|+||+||||+++..++|||||+|.++ +|.+ +.|+++|+| ..++++ +++|||++++ ++ ++
T Consensus 25 ~~~~-~~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~--~~ 101 (224)
T 2f96_A 25 RFRG-YLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLR--MA 101 (224)
T ss_dssp HTTT-EEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTC--CC
T ss_pred cccC-CcEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHh--cC
Confidence 3444 48999999999999988999999999997 6753 789999999 567877 8999999985 77 78
Q ss_pred CCHHHHHHHHHHHHHhcCC--CCCceEEEEECCcchhHHHHHHHHHhcCCCC-CC-CCceeeHHHHHHHHHhcCCCCCCC
Q 019538 191 PRMEDLIPILLHYVKSRQK--PGGYILFVAHNARSFDVPFLINEFSRCSYEV-PN-NWLFMDTLTLARELMKSGGSNLPS 266 (339)
Q Consensus 191 p~~~evl~~~~~~l~~~~~--~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~-p~-~~~~iDtl~lar~l~~~~~~~l~~ 266 (339)
+++.+++.+|.+|+..... ..+..++||||+ .||+.||.++|.++|+.. |. .+.++||+.+++.+++
T Consensus 102 ~~~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~-~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~-------- 172 (224)
T 2f96_A 102 VQEEAALTEIFRGIRKALKANGCKRAILVGHNS-SFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG-------- 172 (224)
T ss_dssp BCHHHHHHHHHHHHHHHHHHTTCSEEEEEETTH-HHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS--------
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCCCEEEEeCh-hhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC--------
Confidence 8999999999999863100 002468999999 999999999999999874 32 3578999999998874
Q ss_pred CCCHHHHHHHhCCCCCC-CCCChHHHHHHHHHHHHHHHHhhc
Q 019538 267 KVSLQALREYYGIPLVG-SAHRAMADVNCLSLILQRLTFDLK 307 (339)
Q Consensus 267 ~~~L~~L~~~~gI~~~~-~aH~Al~DA~~ta~L~~~l~~~l~ 307 (339)
.++|.+|++++|++..+ .+|+|++||++|++||.++..++.
T Consensus 173 ~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 214 (224)
T 2f96_A 173 QTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWK 214 (224)
T ss_dssp CCSHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999753 699999999999999999988754
No 9
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.96 E-value=1.4e-28 Score=224.65 Aligned_cols=173 Identities=23% Similarity=0.296 Sum_probs=147.2
Q ss_pred ccCCCcEEEEEEecCCCCCCCCcEEEEEEEEEc---CCee---eeEEEEEcC--CCCCCC--ccccCCcHH-hhcCCCCC
Q 019538 123 LAKLVTAIVFDIETTGFSRENERIIEIAFQDLL---GGEN---STFQTLVNP--KRQVPN--AHVHGITTD-MVCKPDVP 191 (339)
Q Consensus 123 l~~~~~~vviDiETTGl~p~~~~IIEIgav~v~---~g~i---~~f~~lV~P--~~~i~~--~~itGIt~e-~l~~~~ap 191 (339)
+.+ ..+|+||+||||++|..++|||||+|.++ +|.+ +.|+.+|+| ..++++ +.+|||+++ ++. +++
T Consensus 34 l~~-~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~--~~~ 110 (235)
T 3v9w_A 34 FRG-FYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDR--GAV 110 (235)
T ss_dssp TTT-EEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGG--CCB
T ss_pred ccC-CcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHh--cCC
Confidence 444 48999999999999989999999999987 6653 899999999 456777 899999999 888 889
Q ss_pred CHHHHHHHHHHHHHhcCCC--CCceEEEEECCcchhHHHHHHHHHhcCCCCC-C-CCceeeHHHHHHHHHhcCCCCCCCC
Q 019538 192 RMEDLIPILLHYVKSRQKP--GGYILFVAHNARSFDVPFLINEFSRCSYEVP-N-NWLFMDTLTLARELMKSGGSNLPSK 267 (339)
Q Consensus 192 ~~~evl~~~~~~l~~~~~~--~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p-~-~~~~iDtl~lar~l~~~~~~~l~~~ 267 (339)
++.+++.+|.+|+.+.... .++.++||||+ .||+.||.+++.++|+..+ . .+.++||+.+++.+++ .
T Consensus 111 ~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~-~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p--------~ 181 (235)
T 3v9w_A 111 SGYEALHEIFKVVRKGIKASGCNRAIMVAHNA-NFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG--------Q 181 (235)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTCCEEEEEETTT-HHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS--------C
T ss_pred CHHHHHHHHHHHHHHHhhhccCCCcEEEEeCh-HHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC--------C
Confidence 9999999999999742110 02469999999 9999999999999998752 2 2468999999999875 5
Q ss_pred CCHHHHHHHhCCCCCC-CCCChHHHHHHHHHHHHHHHHhhc
Q 019538 268 VSLQALREYYGIPLVG-SAHRAMADVNCLSLILQRLTFDLK 307 (339)
Q Consensus 268 ~~L~~L~~~~gI~~~~-~aH~Al~DA~~ta~L~~~l~~~l~ 307 (339)
++|++|+++||++.++ .+|+|++||.+|++||.+|..++.
T Consensus 182 ~~L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~ 222 (235)
T 3v9w_A 182 TVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWK 222 (235)
T ss_dssp CSHHHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999864 699999999999999999998765
No 10
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=223.14 Aligned_cols=166 Identities=20% Similarity=0.294 Sum_probs=137.5
Q ss_pred CcEEEEEEecCCCCCCCC--cEEEEEEEEEcCC--ee-eeEEEEEcCCC--CCCC--ccccCCcHHhhcCCCCCCHHHHH
Q 019538 127 VTAIVFDIETTGFSRENE--RIIEIAFQDLLGG--EN-STFQTLVNPKR--QVPN--AHVHGITTDMVCKPDVPRMEDLI 197 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~~--~IIEIgav~v~~g--~i-~~f~~lV~P~~--~i~~--~~itGIt~e~l~~~~ap~~~evl 197 (339)
.++|+||+||||+++..+ +|||||+|.++++ ++ +.|+++|+|.. ++++ +++|||++++++ ++|++.+|+
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~--~a~~~~~v~ 108 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVD--GQPSLQQVL 108 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHT--TCCCHHHHH
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHc--CCCCHHHHH
Confidence 479999999999998764 9999999999865 55 88999999987 6777 899999999999 899999999
Q ss_pred HHHHHHHHhcCCCCCceEEEEECCc-------chhHHH-HHHHHHhcCCCCCCC-CceeeHHHHHHHHHhcCCCCCCCCC
Q 019538 198 PILLHYVKSRQKPGGYILFVAHNAR-------SFDVPF-LINEFSRCSYEVPNN-WLFMDTLTLARELMKSGGSNLPSKV 268 (339)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~lV~hN~~-------~FD~~f-L~~~~~r~gl~~p~~-~~~iDtl~lar~l~~~~~~~l~~~~ 268 (339)
.+|.+|+.+. ++||||+. .||+.| |.+++.+.|++.|.. ..++|+....+..... .+ ++
T Consensus 109 ~~f~~~l~~~-------~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~----~p-~~ 176 (224)
T 2xri_A 109 ERVDEWMAKE-------GLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGC----WP-KN 176 (224)
T ss_dssp HHHHHHHHHT-------TTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTS----CC-TT
T ss_pred HHHHHHHhhc-------ccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhcc----CC-CC
Confidence 9999999974 45566642 699997 779999999987632 3689955444433222 23 68
Q ss_pred CHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 019538 269 SLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306 (339)
Q Consensus 269 ~L~~L~~~~gI~~~~~aH~Al~DA~~ta~L~~~l~~~l 306 (339)
+|.+|++++|++..+.+|+|++||++|++||.+|++++
T Consensus 177 ~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g 214 (224)
T 2xri_A 177 GLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRG 214 (224)
T ss_dssp THHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHcC
Confidence 99999999999987678999999999999999998764
No 11
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.96 E-value=3.2e-28 Score=234.80 Aligned_cols=184 Identities=21% Similarity=0.246 Sum_probs=152.1
Q ss_pred CcEEEEEEecCCCC----CCCCcEEEEEEEEEcC--Cee-eeEEEEEcCCC--CCCC--ccccCCcHHhhcCCCCCCHHH
Q 019538 127 VTAIVFDIETTGFS----RENERIIEIAFQDLLG--GEN-STFQTLVNPKR--QVPN--AHVHGITTDMVCKPDVPRMED 195 (339)
Q Consensus 127 ~~~vviDiETTGl~----p~~~~IIEIgav~v~~--g~i-~~f~~lV~P~~--~i~~--~~itGIt~e~l~~~~ap~~~e 195 (339)
..||+||+||||++ +..++|||||+|.+++ |.+ +.|++||+|.. +|++ +.+||||+++++ ++|++.+
T Consensus 128 ~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~--~ap~~~e 205 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVD--RADTFPQ 205 (349)
T ss_dssp SEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHH--TSEEHHH
T ss_pred CeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHh--CCCCHHH
Confidence 47999999999995 4678999999999984 465 89999999998 7887 899999999999 8899999
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEECCcchhHH-HHHHHHHhcCCCCCC-CCceeeHHHHHHHHHhcCCCCCCCCCCHHHH
Q 019538 196 LIPILLHYVKSRQKPGGYILFVAHNARSFDVP-FLINEFSRCSYEVPN-NWLFMDTLTLARELMKSGGSNLPSKVSLQAL 273 (339)
Q Consensus 196 vl~~~~~~l~~~~~~~~~~~lV~hN~~~FD~~-fL~~~~~r~gl~~p~-~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L 273 (339)
|+.+|.+|+.+.....+..++||||+ .||+. ||..+|.++|+..|. ...++|+..+++.+++... +.++|.+|
T Consensus 206 Vl~~f~~~l~~~~~~~~~~~lVaHNa-~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~----~~~~L~~l 280 (349)
T 1zbu_A 206 VLKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR----SQTKLTIM 280 (349)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG----GGGSHHHH
T ss_pred HHHHHHHHHhcccccCCCcEEEEECc-HhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCC----CCCCHHHH
Confidence 99999999986311112258999999 99999 999999999988763 2368999998887764210 14899999
Q ss_pred HHHhCCCCCCCCCChHHHHHHHHHHHHHHHHhhc-cCHHHHHHhc
Q 019538 274 REYYGIPLVGSAHRAMADVNCLSLILQRLTFDLK-LSLCDLIERG 317 (339)
Q Consensus 274 ~~~~gI~~~~~aH~Al~DA~~ta~L~~~l~~~l~-~tl~~L~~~s 317 (339)
+++||++..+.+|+|++||.+|++||.++..++. ..+.+|+..+
T Consensus 281 ~~~~gi~~~g~~HrAl~DA~ata~ll~~ll~~~~~~~i~ell~~~ 325 (349)
T 1zbu_A 281 LEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAG 325 (349)
T ss_dssp HHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEETT
T ss_pred HHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHhhc
Confidence 9999999887789999999999999999998764 4444444443
No 12
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.95 E-value=3.2e-27 Score=224.38 Aligned_cols=187 Identities=19% Similarity=0.319 Sum_probs=150.8
Q ss_pred CcEEEEEEecCCCCCCCC---cEEEEEEEEE--cCCee-e--eEEEEEcCCCC--CCC--ccccCCcHHhhcCCCCCCHH
Q 019538 127 VTAIVFDIETTGFSRENE---RIIEIAFQDL--LGGEN-S--TFQTLVNPKRQ--VPN--AHVHGITTDMVCKPDVPRME 194 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~~---~IIEIgav~v--~~g~i-~--~f~~lV~P~~~--i~~--~~itGIt~e~l~~~~ap~~~ 194 (339)
.++|+||+||||+++..+ +|||||+|.+ .+|++ + .|++||+|... +++ +++|||++++++ ++|++.
T Consensus 19 ~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~--~ap~~~ 96 (308)
T 3cg7_A 19 DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSID--TADTFD 96 (308)
T ss_dssp SEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHH--TSCBHH
T ss_pred CeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHh--cCCCHH
Confidence 479999999999998765 9999999999 46776 5 89999999984 777 899999999999 899999
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEEECCcchhH-HHHHHHHHhcCCCCCC-CCceeeHHHHHHHHHhcCCC-CCCCCCCHH
Q 019538 195 DLIPILLHYVKSRQKPGGYILFVAHNARSFDV-PFLINEFSRCSYEVPN-NWLFMDTLTLARELMKSGGS-NLPSKVSLQ 271 (339)
Q Consensus 195 evl~~~~~~l~~~~~~~~~~~lV~hN~~~FD~-~fL~~~~~r~gl~~p~-~~~~iDtl~lar~l~~~~~~-~l~~~~~L~ 271 (339)
+|+.+|.+|+.+...-+.++++|+| + .||+ .||.+++.++|+..|. ...++||+.+++.+++.... ...++++|.
T Consensus 97 evl~~f~~~l~~~~lvahn~~lv~~-g-~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~ 174 (308)
T 3cg7_A 97 VVYEQFQQWLITLGLEEGKFAFVCD-S-RQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIG 174 (308)
T ss_dssp HHHHHHHHHHHHHCCCTTSEEEEES-S-SHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHH
T ss_pred HHHHHHHHHHHhCCcCCcceEEecc-C-cccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHH
Confidence 9999999999975433334444444 4 6999 7999999999998873 23689999999998875321 011257899
Q ss_pred HHHHHhCCCCCCCCCChHHHHHHHHHHHHHHHHhhc-cCHHHHHHhc
Q 019538 272 ALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLK-LSLCDLIERG 317 (339)
Q Consensus 272 ~L~~~~gI~~~~~aH~Al~DA~~ta~L~~~l~~~l~-~tl~~L~~~s 317 (339)
+|++++|++..+.+|+|++||.+|++||.+|+.+.. .++.+++.++
T Consensus 175 ~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~~~~~i~~~~~~s 221 (308)
T 3cg7_A 175 KMNEYYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVTVNELLTCC 221 (308)
T ss_dssp HHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEESC
T ss_pred HHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHcCCCCChHHHHhhc
Confidence 999999999987679999999999999999988654 3444444333
No 13
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.94 E-value=1.2e-27 Score=211.72 Aligned_cols=160 Identities=17% Similarity=0.233 Sum_probs=127.4
Q ss_pred CcEEEEEEecCCCCCCC-CcEEEEEEEEEcCCeeeeEEEEEcCCCCCCC--ccccCCcHHhhcCCCCCCHHHHHHHHHHH
Q 019538 127 VTAIVFDIETTGFSREN-ERIIEIAFQDLLGGENSTFQTLVNPKRQVPN--AHVHGITTDMVCKPDVPRMEDLIPILLHY 203 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~-~~IIEIgav~v~~g~i~~f~~lV~P~~~i~~--~~itGIt~e~l~~~~ap~~~evl~~~~~~ 203 (339)
.++|+||+||||+++.. .+|+|||+|..++..+ |++||+|..++++ +++||||+++++ ++|++.+|+.+|.+|
T Consensus 5 ~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i--~~~lV~P~~~i~~~~~~i~GIt~~~l~--~a~~~~~v~~~~~~~ 80 (189)
T 1wlj_A 5 REVVAMDCEMVGLGPHRESGLARCSLVNVHGAVL--YDKFIRPEGEITDYRTRVSGVTPQHMV--GATPFAVARLEILQL 80 (189)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEE--EEEEEECSSCEEECCHHHHCCCHHHHT--TCEEHHHHHHHHHHH
T ss_pred CeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEE--EeeEecCCCCCCccccCCCCCCHHHHc--CCCCHHHHHHHHHHH
Confidence 47999999999999876 4788999987654444 9999999998876 899999999999 899999999999999
Q ss_pred HHhcCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCCCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHHH-hCCCCC
Q 019538 204 VKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREY-YGIPLV 282 (339)
Q Consensus 204 l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~-~gI~~~ 282 (339)
+.+ .++||||+ .||+.||... .| ...++||+.++........+... +++|++|+++ ||++..
T Consensus 81 l~~-------~~lV~hn~-~fD~~~L~~~-------~~-~~~~idt~~~~~~~~~~~~p~~~-~~~L~~l~~~~lgi~~~ 143 (189)
T 1wlj_A 81 LKG-------KLVVGHDL-KHDFQALKED-------MS-GYTIYDTSTDRLLWREAKLDHCR-RVSLRVLSERLLHKSIQ 143 (189)
T ss_dssp HTT-------SEEEESSH-HHHHHHTTCC-------CT-TCEEEEGGGCHHHHHHHTC------CCHHHHHHHHTCCCCS
T ss_pred HCC-------CEEEECCc-HHHHHHHHHh-------CC-CCceechHhhhhhhhcccCCCCC-CccHHHHHHHHcCCCCC
Confidence 974 48999999 8999999643 22 23689999874321100111223 8999999998 799987
Q ss_pred CC--CCChHHHHHHHHHHHHHHHHhhc
Q 019538 283 GS--AHRAMADVNCLSLILQRLTFDLK 307 (339)
Q Consensus 283 ~~--aH~Al~DA~~ta~L~~~l~~~l~ 307 (339)
+. +|+|++||++|++||.++.+.+.
T Consensus 144 ~~~~~H~Al~Da~ata~l~~~l~~~~~ 170 (189)
T 1wlj_A 144 NSLLGHSSVEDARATMELYQISQRIRA 170 (189)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 43 99999999999999999987654
No 14
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.94 E-value=2.9e-27 Score=207.16 Aligned_cols=158 Identities=21% Similarity=0.200 Sum_probs=128.1
Q ss_pred CcEEEEEEecCCCCCCCCcEEEEEEEEEcC-Cee-e-eEEEEEcCCCCCCC---------ccccCCcHHhhcCCCCCCHH
Q 019538 127 VTAIVFDIETTGFSRENERIIEIAFQDLLG-GEN-S-TFQTLVNPKRQVPN---------AHVHGITTDMVCKPDVPRME 194 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~~~IIEIgav~v~~-g~i-~-~f~~lV~P~~~i~~---------~~itGIt~e~l~~~~ap~~~ 194 (339)
.++|+||+||||++|..++|||||+|.+++ +.+ . .|+++|+|..++++ +.+||||+++++ ++|++.
T Consensus 5 ~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~--~~~~~~ 82 (180)
T 2igi_A 5 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKA--STMGDR 82 (180)
T ss_dssp GCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHH--CCCCHH
T ss_pred CcEEEEEeeCCCCCCCCCceEEEEEEEEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHh--cCCCHH
Confidence 479999999999999889999999998884 433 4 59999999876533 356999999999 899999
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCCCceee--HHH-HHHHHHhcCCCCCCCCCCHH
Q 019538 195 DLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD--TLT-LARELMKSGGSNLPSKVSLQ 271 (339)
Q Consensus 195 evl~~~~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iD--tl~-lar~l~~~~~~~l~~~~~L~ 271 (339)
+|+.+|.+|+.+.. +.++.++||||+ .||+.||.+++.+++..+ .+.++| |+. +++.++|.. .
T Consensus 83 ~v~~~~~~~l~~~~-~~~~~~lv~hn~-~fD~~fL~~~~~~~~~~~--~~~~~d~~tl~~l~~~~~p~~------~---- 148 (180)
T 2igi_A 83 EAELATLEFLKQWV-PAGKSPICGNSI-GQDRRFLFKYMPELEAYF--HYRYLDVSTLKELARRWKPEI------L---- 148 (180)
T ss_dssp HHHHHHHHHHTTTS-CTTTSCEEESSH-HHHHHHHHHHCHHHHHHS--CSCEEETHHHHHHHHHHCGGG------G----
T ss_pred HHHHHHHHHHHHhC-CCCCceEEecCH-HHHHHHHHHHHHHhccCC--CcceeeHHHHHHHHHHhChHh------h----
Confidence 99999999998532 112468999999 999999999998876433 345789 884 888876541 1
Q ss_pred HHHHHhCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 019538 272 ALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306 (339)
Q Consensus 272 ~L~~~~gI~~~~~aH~Al~DA~~ta~L~~~l~~~l 306 (339)
.|++.. .+|+|++||++|++||+++.+.+
T Consensus 149 -----~~i~~~-~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 149 -----DGFTKQ-GTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp -----GGSCCC-CCCCHHHHHHHHHHHHHHHHHHT
T ss_pred -----hCCCCc-CCcCcHHHHHHHHHHHHHHHHHh
Confidence 367554 69999999999999999998764
No 15
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.94 E-value=1.6e-26 Score=204.34 Aligned_cols=158 Identities=20% Similarity=0.185 Sum_probs=127.2
Q ss_pred CcEEEEEEecCCCCCCCCcEEEEEEEEEcCC-e-eee-EEEEEc-CCCC---CCC-----ccccCCcHHhhcCCCCCCHH
Q 019538 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGG-E-NST-FQTLVN-PKRQ---VPN-----AHVHGITTDMVCKPDVPRME 194 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~~~IIEIgav~v~~g-~-i~~-f~~lV~-P~~~---i~~-----~~itGIt~e~l~~~~ap~~~ 194 (339)
.+||+||+||||++|..++|||||+|..+++ . ++. ++.+|+ |... +++ +.+|||+.++++ ++|+++
T Consensus 9 ~~~v~~D~ETTGL~p~~d~IiEIgaV~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~--~~p~~~ 86 (186)
T 3tr8_A 9 DNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKN--SSVDEV 86 (186)
T ss_dssp TCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHT--CCCCHH
T ss_pred CcEEEEEEECCCCCCCCCceEEEEEEEEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHh--cCCCHH
Confidence 5899999999999999999999999966643 3 344 566785 5522 333 467899999999 899999
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCCCceee--HHH-HHHHHHhcCCCCCCCCCCHH
Q 019538 195 DLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD--TLT-LARELMKSGGSNLPSKVSLQ 271 (339)
Q Consensus 195 evl~~~~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iD--tl~-lar~l~~~~~~~l~~~~~L~ 271 (339)
+|+.+|++|+.++..+ ++.++||||+ .||+.||.++|.+.|..++ ++.+| |+. ++++++|...
T Consensus 87 ev~~~~l~fl~~~~~~-~~~~lvghn~-~FD~~FL~~~~~~~~~~~~--~~~iDvsTl~elar~~~P~~~---------- 152 (186)
T 3tr8_A 87 EAETLTLAFLEKYVSA-GKSPLCGNSV-CQDRRFLSRYMPRLNQFFH--YRHLDVTTLKILAQRWAPQIA---------- 152 (186)
T ss_dssp HHHHHHHHHHTTTSCT-TCSCEEESST-HHHHHHHHHHCHHHHHHSC--SCEEEHHHHHHHHHHHCHHHH----------
T ss_pred HHHHHHHHHHHHhccC-CCcEEEEEcH-HHhHHHHHHHHHHcCCCCC--CcEEeHHHHHHHHHHHCcccc----------
Confidence 9999999999654332 3468999999 9999999999998875543 46889 998 9999998631
Q ss_pred HHHHHhCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 019538 272 ALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306 (339)
Q Consensus 272 ~L~~~~gI~~~~~aH~Al~DA~~ta~L~~~l~~~l 306 (339)
-|++.. .+|+|++||+++..++....+.+
T Consensus 153 -----~~~~~~-~~HrAl~Da~ati~~l~~y~~~~ 181 (186)
T 3tr8_A 153 -----AAHIKE-SQHLALQDIRDSIEELRYYRAHL 181 (186)
T ss_dssp -----TTSCCC-CCSCHHHHHHHHHHHHHHHHHHT
T ss_pred -----ccCCCC-CCcChHHHHHHHHHHHHHHHHHh
Confidence 167666 79999999999999999887653
No 16
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.94 E-value=6.9e-26 Score=226.62 Aligned_cols=170 Identities=21% Similarity=0.142 Sum_probs=140.1
Q ss_pred CcEEEEEEecCCCCCCCCcEEEEEEEEEc-CCee-ee-EEEEEcCCCCC-C-C--ccccCCcHHhhcCCCCCC-HHHHHH
Q 019538 127 VTAIVFDIETTGFSRENERIIEIAFQDLL-GGEN-ST-FQTLVNPKRQV-P-N--AHVHGITTDMVCKPDVPR-MEDLIP 198 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~~~IIEIgav~v~-~g~i-~~-f~~lV~P~~~i-~-~--~~itGIt~e~l~~~~ap~-~~evl~ 198 (339)
.+||+||+||||++|..++|||||+|.++ +|.+ +. |++||+|..++ + + ..|||||++++. +++. +.+|+.
T Consensus 9 ~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~--~ap~~~~evl~ 86 (482)
T 2qxf_A 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEAR--AKGENEAAFAA 86 (482)
T ss_dssp CEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHH--HHCBCHHHHHH
T ss_pred CCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHh--cCCCCHHHHHH
Confidence 47999999999999988999999999998 6655 55 99999999886 3 3 799999999998 5554 499999
Q ss_pred HHHHHHHhcCCCCCceEEEEEC-CcchhHHHHHHHHHhcCCCCCC-C----CceeeHHHHHHHHHhcCC-----C----C
Q 019538 199 ILLHYVKSRQKPGGYILFVAHN-ARSFDVPFLINEFSRCSYEVPN-N----WLFMDTLTLARELMKSGG-----S----N 263 (339)
Q Consensus 199 ~~~~~l~~~~~~~~~~~lV~hN-~~~FD~~fL~~~~~r~gl~~p~-~----~~~iDtl~lar~l~~~~~-----~----~ 263 (339)
+|.+|+.. .+.++|||| + .||..||.++|.++|++... . ...+||+.+++.+++... | +
T Consensus 87 ~f~~~l~~-----~~~~lVaHNs~-~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~ 160 (482)
T 2qxf_A 87 RIHSLFTV-----PKTCILGYNNV-RFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG 160 (482)
T ss_dssp HHHHHHTS-----TTEEEEESSTT-TTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTS
T ss_pred HHHHHHcC-----CCCEEEEECCH-HHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccC
Confidence 99999973 236899999 7 89999999999999887432 1 357899999998875211 1 3
Q ss_pred CCCCCCHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 019538 264 LPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306 (339)
Q Consensus 264 l~~~~~L~~L~~~~gI~~~~~aH~Al~DA~~ta~L~~~l~~~l 306 (339)
.+ +++|++|++++|++.. .+|+|++||++|+.||..+....
T Consensus 161 ~~-s~kL~~L~~~~Gi~~~-~aHrAL~DA~aTa~l~~~l~~~~ 201 (482)
T 2qxf_A 161 LP-SFRLEHLTKANGIEHS-NAHDAMADVYATIAMAKLVKTRQ 201 (482)
T ss_dssp SB-CCCHHHHHHHTTCCCC----CTTHHHHHHHHHHHHHHHHS
T ss_pred CC-CCCHHHHHHHcCCCCC-CCCCHHHHHHHHHHHHHHHHHhC
Confidence 44 8999999999999986 68999999999999999988653
No 17
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.6e-25 Score=199.00 Aligned_cols=159 Identities=19% Similarity=0.154 Sum_probs=126.2
Q ss_pred CcEEEEEEecCCCCCCCCcEEEEEEEEEcCC--ee-eeEEEEEcCCCCC----CC-----ccccCCcHHhhcCCCCCCHH
Q 019538 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGG--EN-STFQTLVNPKRQV----PN-----AHVHGITTDMVCKPDVPRME 194 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~~~IIEIgav~v~~g--~i-~~f~~lV~P~~~i----~~-----~~itGIt~e~l~~~~ap~~~ 194 (339)
.+||+||+||||++|..++|||||+|..++. .+ +.|+++|+|..++ ++ ..+|||++++++ ++|++.
T Consensus 9 ~~~vviD~ETTGl~p~~d~IieIgav~~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~--~~p~~~ 86 (194)
T 2gbz_A 9 DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLD--SQVTHA 86 (194)
T ss_dssp CEEEEEEEEESCSCTTTCCEEEEEEEEEETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHH--CCCCHH
T ss_pred CCEEEEEeECCCCCCCCCccEEEEEEEEcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHh--cCCCHH
Confidence 5899999999999999999999999997655 34 5799999998764 33 456999999999 899999
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCCCceeeHHH---HHHHHHhcCCCCCCCCCCHH
Q 019538 195 DLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLT---LARELMKSGGSNLPSKVSLQ 271 (339)
Q Consensus 195 evl~~~~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iDtl~---lar~l~~~~~~~l~~~~~L~ 271 (339)
+|+.+|.+|++++.. .+..++||||+ .||+.||.+++.+.+..+ .+..+|+.. +++.+.|.
T Consensus 87 ev~~~~~~~l~~~~~-~~~~~lvghn~-~FD~~fL~~~~~~~~~~~--~~~~~d~~~l~~l~~~~~p~------------ 150 (194)
T 2gbz_A 87 QAEAQTVAFLGEWIR-AGASPMCGNSI-CQDRRFLHRQMSRLERYF--HYRNLDVSTIKELARRWAPA------------ 150 (194)
T ss_dssp HHHHHHHHHHTTTCC-TTSSCEEESSH-HHHHHHHHHHCHHHHHHS--CSCEEEHHHHHHHHHHHCGG------------
T ss_pred HHHHHHHHHHHHhCC-CCCceEEecCH-HHhHHHHHHHHHHhcccC--CCccccHHHHHHHHHHhCHH------------
Confidence 999999999987532 23456999999 999999999998876433 345789764 44444432
Q ss_pred HHHHHhCCCCCCCCCChHHHHHHHHHHHHHHHHhhc
Q 019538 272 ALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDLK 307 (339)
Q Consensus 272 ~L~~~~gI~~~~~aH~Al~DA~~ta~L~~~l~~~l~ 307 (339)
++ .+++.. .+|+|++||++|+++|+++...+.
T Consensus 151 -~~--~~i~~~-~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 151 -VA--SGFAKS-SAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp -GG--TTCCCC-SCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred -HH--hCCCCC-CCcccHHHHHHHHHHHHHHHHHhc
Confidence 11 135544 689999999999999999988653
No 18
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.22 E-value=1.1e-10 Score=120.00 Aligned_cols=158 Identities=18% Similarity=0.214 Sum_probs=116.1
Q ss_pred CcEEEEEEecCCCCCCCCcEEEEEEEEEcCCeeeeEEEEEcCCCCCCCccccCCcHHhhcCCCCCCHHHHHHHHHHHHHh
Q 019538 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVPRMEDLIPILLHYVKS 206 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~~~IIEIgav~v~~g~i~~f~~lV~P~~~i~~~~itGIt~e~l~~~~ap~~~evl~~~~~~l~~ 206 (339)
..+|+||+||||+++..++|++|+++. .+|+ ..||.+.. . ++. +. +.+++++++..|.+|+.+
T Consensus 26 ~~~va~DtEttgl~~~~~~iv~I~~~~-~~g~----~~yip~~~----~---~~~---~~--~~l~~~~vl~~L~~~L~d 88 (605)
T 2kfn_A 26 APVFAFDTETDSLDNISANLVGLSFAI-EPGV----AAYIPVAH----D---YLD---AP--DQISRERALELLKPLLED 88 (605)
T ss_dssp SSSEEEEEEESCSCTTTCCEEEEEEEE-ETTE----EEEEECCC----C---STT---CC--CCCCHHHHHHHHHHHHTC
T ss_pred CCeEEEEEecCCCCcccCceEEEEEEE-cCCc----EEEEeccc----c---ccc---cc--cccCHHHHHHHHHHHHcC
Confidence 368999999999998889999999884 3443 23442211 0 111 11 345588899999999985
Q ss_pred cCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCCCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHHHh-CCCCC---
Q 019538 207 RQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYY-GIPLV--- 282 (339)
Q Consensus 207 ~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~~-gI~~~--- 282 (339)
...++|+||+ +||+.+|.+ +|+..+. .++||+.+++.+.|... +++|+.|++.| |+...
T Consensus 89 -----~~i~kV~hna-k~D~~~L~~----~Gi~l~~--~~~DT~laayLL~p~~~-----~~~L~~La~~~Lg~~~i~~~ 151 (605)
T 2kfn_A 89 -----EKALKVGQNL-KYDRGILAN----YGIELRG--IAFDTMLESYILNSVAG-----RHDMDSLAERWLKHKTITFE 151 (605)
T ss_dssp -----TTSCEEESSH-HHHHHHHHT----TTCCCCC--EEEEHHHHHHHHCTTSS-----CCSHHHHHHHHSCCCCCCHH
T ss_pred -----CCCeEEEECc-HHHHHHHHH----CCCCCCC--ccccHHHHHHHhCCCCC-----CCCHHHHHHHhcCCCcccHH
Confidence 2457999999 999999964 6877653 58999999999987542 89999999988 76531
Q ss_pred -----CC-------------CCChHHHHHHHHHHHHHHHHhhcc--CHHHHHHhcC
Q 019538 283 -----GS-------------AHRAMADVNCLSLILQRLTFDLKL--SLCDLIERGF 318 (339)
Q Consensus 283 -----~~-------------aH~Al~DA~~ta~L~~~l~~~l~~--tl~~L~~~s~ 318 (339)
+. .|.|..||.++++|+..|..++.. .+.+|+...+
T Consensus 152 ~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~~~~~l~~L~~~iE 207 (605)
T 2kfn_A 152 EIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIE 207 (605)
T ss_dssp HHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTH
T ss_pred HHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 10 155889999999999999988764 4566665443
No 19
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.95 E-value=8.8e-10 Score=115.02 Aligned_cols=141 Identities=24% Similarity=0.244 Sum_probs=97.2
Q ss_pred EEEEEEecCCCCCCCCcEEEEEEEEEcCCeeeeEEEEEcCCCCCCCccccCCcHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 019538 129 AIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVPRMEDLIPILLHYVKSRQ 208 (339)
Q Consensus 129 ~vviDiETTGl~p~~~~IIEIgav~v~~g~i~~f~~lV~P~~~i~~~~itGIt~e~l~~~~ap~~~evl~~~~~~l~~~~ 208 (339)
+|+||+||||+++..++|..|.++...++.+ ..+.|. ..++++..|.+|+. .
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~----~~~~p~----------------------~i~~~l~~L~~~l~-~- 52 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEY----VSYRPS----------------------DFGAYLDALEAEVA-R- 52 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEE----EEECGG----------------------GHHHHHHHHHHHHH-T-
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcE----EEEChH----------------------HHHHHHHHHHHHHh-c-
Confidence 5899999999999888887777765444332 122221 14556777888886 2
Q ss_pred CCCCceEEEEECCcchhHHHHHHHHHh---cCCCCCCCCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHHHh--------
Q 019538 209 KPGGYILFVAHNARSFDVPFLINEFSR---CSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYY-------- 277 (339)
Q Consensus 209 ~~~~~~~lV~hN~~~FD~~fL~~~~~r---~gl~~p~~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~~-------- 277 (339)
..++|+||+.+||+.+|.+.+.+ .|+..+. ..++||+.+++.+.+... +++|+.|++.|
T Consensus 53 ----~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~-~~~~DTmlaayLL~p~~~-----~~~L~~La~~~L~~sL~~~ 122 (698)
T 1x9m_A 53 ----GGLIVFHNGHKYDVPALTKLAKLQLNREFHLPR-ENCIDTLVLSRLIHSNLK-----DTDMGLLRSGKLPGALEAW 122 (698)
T ss_dssp ----TCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCG-GGEEEHHHHHHHHTTTSC-----CCTTTTSCGGGSCSCCCHH
T ss_pred ----CCeEEEcCChHHHHHHHHHhhhhcccCCccCCC-CcchhHHHHHHHhCCCCC-----CCCHHHHHHHHcccchhhh
Confidence 35899999636999999876543 3776541 258999999999988542 56666665544
Q ss_pred CC-------CC----------CC---------------CCCChHHHHHHHHHHHHHHHHhhc
Q 019538 278 GI-------PL----------VG---------------SAHRAMADVNCLSLILQRLTFDLK 307 (339)
Q Consensus 278 gI-------~~----------~~---------------~aH~Al~DA~~ta~L~~~l~~~l~ 307 (339)
|. +. .| ..|.|..||.+|+.|+..|..++.
T Consensus 123 g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~ 184 (698)
T 1x9m_A 123 GYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKH 184 (698)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred cccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 10 01 136689999999999999988664
No 20
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.86 E-value=1.4e-08 Score=89.19 Aligned_cols=153 Identities=12% Similarity=0.087 Sum_probs=90.8
Q ss_pred CcEEEEEEecCCCCCCCCcEEEEEEEEEcCCeeeeEEEEEcCCCC--CCC----ccccCCcHHhhcCCCCCCHHHHHHHH
Q 019538 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQ--VPN----AHVHGITTDMVCKPDVPRMEDLIPIL 200 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~~~IIEIgav~v~~g~i~~f~~lV~P~~~--i~~----~~itGIt~e~l~~~~ap~~~evl~~~ 200 (339)
+.-+++|+|+||..+ ..++|+||+|.-+| .+|+..+..-.+ ..+ .-+.++...... ...++.++..+|
T Consensus 22 m~r~FlDTEFt~d~~-~~eLISIGlV~EdG---rEFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~--~~~s~~~i~~~L 95 (190)
T 4hec_A 22 MVRYFYDTEFIEDGH-TIELISIGVVAEDG---REYYAVSTEFDPERAGSWVRTHVLPKLPPPASQ--LWRSRQQIRLDL 95 (190)
T ss_dssp EEEEEEEEEEEECSS-CEEEEEEEEEETTS---CEEEEEETTSCGGGCCHHHHHHTGGGSCCTTST--TEECHHHHHHHH
T ss_pred eeEEEEeeeecCCCC-CCCEEEEEEEcCCC---CEEEEEecCCChhhCcHHHHhccccCCCCCccc--ccCCHHHHHHHH
Confidence 467899999998543 67899999997554 357776653211 222 123444332222 234689999999
Q ss_pred HHHHHhcCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCC--CCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHHHhC
Q 019538 201 LHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN--NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYG 278 (339)
Q Consensus 201 ~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~--~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~~g 278 (339)
.+|+... +.....|++|++ .||..+|...+...+ ..|. +.-..|...+.... ..+.++
T Consensus 96 ~~FL~~~--~~~~~eLwa~~~-~yD~~~L~ql~g~m~-~lP~~~p~~~~dlr~~~~~~---g~~~lp------------- 155 (190)
T 4hec_A 96 EEFLRID--GTDSIELWAWVG-AYDHVALCQLWGPMT-ALPPTVPRFTRELRQLWEDR---GCPRMP------------- 155 (190)
T ss_dssp HHHTTTT--SSCEEEEEESSC-HHHHHHHHTTTSSGG-GSCTTSCSSCEEHHHHHHHT---TCCCCC-------------
T ss_pred HHHHHhc--CCCCCEEEEecc-cccHHHHHHHhcccc-cCCcccchhhHHHHHHHHHc---CCCCCC-------------
Confidence 9999753 223457999999 999999976543211 1221 11234443332211 111111
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 019538 279 IPLVGSAHRAMADVNCLSLILQRLTFDL 306 (339)
Q Consensus 279 I~~~~~aH~Al~DA~~ta~L~~~l~~~l 306 (339)
+..+.+|+||.||++.+..|+.+....
T Consensus 156 -~~~~~~H~AL~DAR~n~~~~~~~~~~~ 182 (190)
T 4hec_A 156 -PRPRDVHDALVDARDQLRRFRLITSTD 182 (190)
T ss_dssp -C-----CCHHHHHHHHHHHHHHHHC--
T ss_pred -CCCCCCcCcHHHHHHHHHHHHHHhCcc
Confidence 122368999999999999999987643
No 21
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.80 E-value=5.5e-08 Score=102.58 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=105.7
Q ss_pred CcEEEEEEecCC---CCCCCCcEEEEEEEEEcCCeeeeEEEEEcCCCCCCCccccCCcHHhhcCCCCCCHHHHHHHHHHH
Q 019538 127 VTAIVFDIETTG---FSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVPRMEDLIPILLHY 203 (339)
Q Consensus 127 ~~~vviDiETTG---l~p~~~~IIEIgav~v~~g~i~~f~~lV~P~~~i~~~~itGIt~e~l~~~~ap~~~evl~~~~~~ 203 (339)
-++++||+||+| +++..++|+.||++.-.++.+ +. .+| +..+.+. ..++..+.+..|.++
T Consensus 135 l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~--~t--~~~-----------i~~~~v~--~~~~E~~LL~~f~~~ 197 (775)
T 1qht_A 135 LTMLAFAIATLYHEGEEFGTGPILMISYADGSEARV--IT--WKK-----------IDLPYVD--VVSTEKEMIKRFLRV 197 (775)
T ss_dssp CCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEE--EE--SSC-----------CCCSSEE--ECSCHHHHHHHHHHH
T ss_pred cEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCee--Ee--ecc-----------ccccceE--EcCCHHHHHHHHHHH
Confidence 489999999998 667789999999874333221 10 011 1111233 345678899999999
Q ss_pred HHhcCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCC---------------------CCceeeHHHHHHHHHhcCCC
Q 019538 204 VKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN---------------------NWLFMDTLTLARELMKSGGS 262 (339)
Q Consensus 204 l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~---------------------~~~~iDtl~lar~l~~~~~~ 262 (339)
+.+. ++.++||||+..||+++|...+..+|++... ....+|++.+++....
T Consensus 198 i~~~----dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~---- 269 (775)
T 1qht_A 198 VREK----DPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTIN---- 269 (775)
T ss_dssp HHHH----CCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSC----
T ss_pred HHhc----CCCEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcC----
Confidence 9976 4569999999999999999999988877531 1246899999987542
Q ss_pred CCCCCCCHHHHHH-HhCCCCCCCC------------------CChHHHHHHHHHHHHHHH
Q 019538 263 NLPSKVSLQALRE-YYGIPLVGSA------------------HRAMADVNCLSLILQRLT 303 (339)
Q Consensus 263 ~l~~~~~L~~L~~-~~gI~~~~~a------------------H~Al~DA~~ta~L~~~l~ 303 (339)
++ +++|+++++ .+|.....-. .-.+.||..+..|+.++.
T Consensus 270 -l~-sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 270 -LP-TYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp -CS-CCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cC-cCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34 899999997 5787543210 113678999999877653
No 22
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.73 E-value=8.3e-08 Score=89.52 Aligned_cols=180 Identities=14% Similarity=0.200 Sum_probs=119.5
Q ss_pred hhhhhhhccCccCCCcEEEEEEecCCCCCC--C-------------------CcEEEEEEEEEc-CCe------eeeEEE
Q 019538 113 IEQIIAENKDLAKLVTAIVFDIETTGFSRE--N-------------------ERIIEIAFQDLL-GGE------NSTFQT 164 (339)
Q Consensus 113 ~~~~~~~~~~l~~~~~~vviDiETTGl~p~--~-------------------~~IIEIgav~v~-~g~------i~~f~~ 164 (339)
+.+.++.-..+-+-.+||++|+|.+|+... . -.|||+|+...+ +|. .-.|+.
T Consensus 20 l~ee~~~I~~~i~~~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p~~~~~wqFNF 99 (285)
T 4gmj_B 20 LDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNF 99 (285)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCCSSCCEEEEEB
T ss_pred HHHHHHHHHHHHhcCCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcCCCeeEEEEEE
Confidence 444444333322225899999999997421 0 149999998876 222 245666
Q ss_pred EEcCCCCCCC------ccccCCcHHhhcCCCCCCHHHHHHHHHHHHHhc-CCCCCceEEEEECCcchhHHHHHHHHHhcC
Q 019538 165 LVNPKRQVPN------AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSR-QKPGGYILFVAHNARSFDVPFLINEFSRCS 237 (339)
Q Consensus 165 lV~P~~~i~~------~~itGIt~e~l~~~~ap~~~evl~~~~~~l~~~-~~~~~~~~lV~hN~~~FD~~fL~~~~~r~g 237 (339)
...|...+-. -.-+||.-+...+.|.+ ..+ |.+.+... .....+..+|+|++ .+|+.+|.+.+....
T Consensus 100 ~f~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~-~~~----f~ell~~sglvl~~~v~WvtfH~-~yDf~yL~k~lt~~~ 173 (285)
T 4gmj_B 100 KFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIE-TQY----FAELLMTSGVVLCEGVKWLSFHS-GYDFGYLIKILTNSN 173 (285)
T ss_dssp CCCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBC-HHH----HHHHHHTSSSSSCTTCEEEESSC-HHHHHHHHHHHHTSC
T ss_pred EeccccccccHHHHHHHHHcCCCHHHHHHcCCC-HHH----HHHHHHHhHHHhcCCCceEEecc-hhhHHHHHHHHhCCC
Confidence 6777665433 23478877766655665 333 33333221 01124578999999 899999998887544
Q ss_pred CCCC-----------CCCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 019538 238 YEVP-----------NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306 (339)
Q Consensus 238 l~~p-----------~~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~~gI~~~~~aH~Al~DA~~ta~L~~~l~~~l 306 (339)
++.. ++ .++|+..+++... ++ ..+|+++++.+|++.-+..|.|-+|++.|+.+|.+|.+..
T Consensus 174 LP~~~~eF~~~l~~~FP-~vYD~K~l~~~~~-----~l--~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~ 245 (285)
T 4gmj_B 174 LPEEELDFFEILRLFFP-VIYDVKYLMKSCK-----NL--KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245 (285)
T ss_dssp CCSSHHHHHHHHHHHCS-CEEEHHHHGGGST-----TC--CSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCc-hhhhHHHHHHhcc-----cc--CChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence 4321 11 3788887775432 12 4589999999999988899999999999999999998765
No 23
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=98.53 E-value=1.2e-06 Score=85.32 Aligned_cols=163 Identities=21% Similarity=0.284 Sum_probs=103.3
Q ss_pred CcEEEEEEecCC--C-CCC--CCcEEEEEEEEEcCCeeeeEEEEEcCC-CCC-CC-c------cccCCc---HH---hh-
Q 019538 127 VTAIVFDIETTG--F-SRE--NERIIEIAFQDLLGGENSTFQTLVNPK-RQV-PN-A------HVHGIT---TD---MV- 185 (339)
Q Consensus 127 ~~~vviDiETTG--l-~p~--~~~IIEIgav~v~~g~i~~f~~lV~P~-~~i-~~-~------~itGIt---~e---~l- 185 (339)
-++++|||||+| + ++. .++|+.|+++...+++...| .++++. ... +- . .+..++ .. .+
T Consensus 106 l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~ 184 (388)
T 1noy_A 106 VRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVF-DLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDRVI 184 (388)
T ss_dssp CCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEE-EECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHHTTEE
T ss_pred eEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCCeEEEE-EEeeccCCCCCccccccccccccccccccccccCCCeE
Confidence 489999999998 2 122 46899999987666542122 234331 111 10 0 000010 10 11
Q ss_pred -cCCCCCCHHHHHHHHHHHHHhcCCCCCceEEEEECCcchhHHHHHHHHHh-cCCC-------CC---------------
Q 019538 186 -CKPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSR-CSYE-------VP--------------- 241 (339)
Q Consensus 186 -~~~~ap~~~evl~~~~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r-~gl~-------~p--------------- 241 (339)
. ..++..+.+..|.+++... ++.+++|||+..||+++|...+.. +|+. +.
T Consensus 185 v~--~~~~E~~LL~~f~~~i~~~----dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~ 258 (388)
T 1noy_A 185 YM--PFDNERDMLMEYINLWEQK----RPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKE 258 (388)
T ss_dssp EE--EESCHHHHHHHHHHHHHHS----CCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCE
T ss_pred EE--EcCCHHHHHHHHHHHHHHh----CCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcc
Confidence 1 2345788999999999875 457999999999999999888776 5521 00
Q ss_pred ----CCCceeeHHHHHHHH-HhcCCCCCCCCCCHHHHHH-HhCCCCCCCCCC----------------hHHHHHHHHHHH
Q 019538 242 ----NNWLFMDTLTLAREL-MKSGGSNLPSKVSLQALRE-YYGIPLVGSAHR----------------AMADVNCLSLIL 299 (339)
Q Consensus 242 ----~~~~~iDtl~lar~l-~~~~~~~l~~~~~L~~L~~-~~gI~~~~~aH~----------------Al~DA~~ta~L~ 299 (339)
.....+|++.+++.+ +.. +. +++|+++++ .+|..... .+. .+.||..+.+|+
T Consensus 259 ~~~i~GR~~lD~~~~~k~~~~~~----l~-sysL~~Va~~~Lg~~K~d-~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~ 332 (388)
T 1noy_A 259 IYSIDGVSILDYLDLYKKFAFTN----LP-SFSLESVAQHETKKGKLP-YDGPINKLRETNHQRYISYNIIDVESVQAID 332 (388)
T ss_dssp EEEETTSEECCHHHHHHHHTCCC----CS-CCSHHHHHHHHHSCCCCC-CSSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEcCeEEeEHHHHHhhcCcCc----cc-CCCHHHHHHHHhCCCCCC-cHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 001278999998884 321 34 999999998 66665432 112 478999999999
Q ss_pred HHH
Q 019538 300 QRL 302 (339)
Q Consensus 300 ~~l 302 (339)
.++
T Consensus 333 ~kl 335 (388)
T 1noy_A 333 KIR 335 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 884
No 24
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=98.40 E-value=5.8e-06 Score=75.67 Aligned_cols=166 Identities=15% Similarity=0.190 Sum_probs=112.7
Q ss_pred CcEEEEEEecCCCCCC-----C----------------CcEEEEEEEEEc-CCe------eeeEEEEEcCCCCCCC----
Q 019538 127 VTAIVFDIETTGFSRE-----N----------------ERIIEIAFQDLL-GGE------NSTFQTLVNPKRQVPN---- 174 (339)
Q Consensus 127 ~~~vviDiETTGl~p~-----~----------------~~IIEIgav~v~-~g~------i~~f~~lV~P~~~i~~---- 174 (339)
.+||++|+|.+|+... . -.|||+|....+ +|. .-.|+...+....+-.
T Consensus 24 ~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~~~~~wqFNF~F~~~~d~~~~~Si 103 (252)
T 2d5r_A 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSI 103 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHHH
T ss_pred CCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCCCceeEEEEEEECCcccccCHHHH
Confidence 5899999999998421 1 259999998876 332 1445555444333322
Q ss_pred --ccccCCcHHhhcCCCCCCHHHHHHHHHHHHHhc-CCCCCceEEEEECCcchhHHHHHHHHHhcCCCCC----------
Q 019538 175 --AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSR-QKPGGYILFVAHNARSFDVPFLINEFSRCSYEVP---------- 241 (339)
Q Consensus 175 --~~itGIt~e~l~~~~ap~~~evl~~~~~~l~~~-~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p---------- 241 (339)
-.-+||.-+...+.|.| ..+ |.+.+... .....+..+|++++ .+|..+|-+.+....++..
T Consensus 104 ~fL~~~G~DF~k~~~~GI~-~~~----F~ell~~sglvl~~~v~Witfhg-~yDf~yL~k~L~~~~LP~~~~~F~~~l~~ 177 (252)
T 2d5r_A 104 ELLTTSGIQFKKHEEEGIE-TQY----FAELLMTSGVVLCEGVKWLSFHS-GYDFGYLIKILTNSNLPEEELDFFEILRL 177 (252)
T ss_dssp HHHHHHTCCHHHHHHHCBC-HHH----HHHHHHTTTSSSSSSCEEEESSC-HHHHHHHHHHHHTSCCCSSHHHHHHHHHH
T ss_pred HHHHHcCCChhHHHhcCCC-HHH----HHHHHHhcCcccCCCceEEEecC-cchHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 24578877766655776 333 33444321 11123568999999 9999999888764333321
Q ss_pred -CCCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 019538 242 -NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFDL 306 (339)
Q Consensus 242 -~~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~~gI~~~~~aH~Al~DA~~ta~L~~~l~~~l 306 (339)
++ .++|+..+++... . + ..+|+++++.+|++..|..|.|-+|++.|+.+|.+|.+..
T Consensus 178 ~FP-~iyD~K~l~~~~~-~----l--~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~ 235 (252)
T 2d5r_A 178 FFP-VIYDVKYLMKSCK-N----L--KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 235 (252)
T ss_dssp HCS-CEEEHHHHGGGCT-T----C--CSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HCc-chhhHHHHHHHhc-c----c--CCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHh
Confidence 11 4678887776532 1 2 4579999999999888899999999999999999998754
No 25
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=98.39 E-value=6.9e-06 Score=87.95 Aligned_cols=156 Identities=19% Similarity=0.265 Sum_probs=103.2
Q ss_pred CcEEEEEEecCCC-----CCCCCcEEEEEEEEEcCCee---eeEEEEEcCCCCCCCccccCCcHHhhcCCCCCCHHHHHH
Q 019538 127 VTAIVFDIETTGF-----SRENERIIEIAFQDLLGGEN---STFQTLVNPKRQVPNAHVHGITTDMVCKPDVPRMEDLIP 198 (339)
Q Consensus 127 ~~~vviDiETTGl-----~p~~~~IIEIgav~v~~g~i---~~f~~lV~P~~~i~~~~itGIt~e~l~~~~ap~~~evl~ 198 (339)
-+++.||+||++. ++..++||+|+++....|.. ..--..+.+..+ +.| ..+. ..++..+.+.
T Consensus 249 lrilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~~-----~~~---~~V~--~~~sE~eLL~ 318 (919)
T 3iay_A 249 LRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSP-----ITG---SMIF--SHATEEEMLS 318 (919)
T ss_dssp CEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCCC-----BTT---BEEE--EESSHHHHHH
T ss_pred ceEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCCC-----CCC---CeEE--ECCCHHHHHH
Confidence 4899999999852 34568999999876554421 111111222111 112 1222 3445789999
Q ss_pred HHHHHHHhcCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCC--------C-------------------------Cc
Q 019538 199 ILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN--------N-------------------------WL 245 (339)
Q Consensus 199 ~~~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~--------~-------------------------~~ 245 (339)
.|.+++... ++.+++|||+..||+++|.+.+..+|++... . ..
T Consensus 319 ~F~~~i~~~----DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~ 394 (919)
T 3iay_A 319 NWRNFIIKV----DPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRL 394 (919)
T ss_dssp HHHHHHHHH----CCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCE
T ss_pred HHHHHHHHh----CCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeE
Confidence 999999876 5678999999999999999999988876310 0 13
Q ss_pred eeeHHHHHHHHHhcCCCCCCCCCCHHHHHHH-hCCCCCCCCC---------C----------hHHHHHHHHHHHHHH
Q 019538 246 FMDTLTLARELMKSGGSNLPSKVSLQALREY-YGIPLVGSAH---------R----------AMADVNCLSLILQRL 302 (339)
Q Consensus 246 ~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~-~gI~~~~~aH---------~----------Al~DA~~ta~L~~~l 302 (339)
.+|++.+.+...+ +. +++|++++++ +|....+-.| . .+.||..+++|+.++
T Consensus 395 ~lDl~~~~k~~~~-----l~-sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 395 QLDLLQFIQREYK-----LR-SYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEEHHHHHHHHCC-----CS-CCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEhHHHHHhhcC-----CC-CCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999887532 44 9999999875 4543321111 1 267999999998886
No 26
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.34 E-value=2.3e-07 Score=94.00 Aligned_cols=131 Identities=16% Similarity=0.056 Sum_probs=99.2
Q ss_pred cEEEEEEecCCCCCCCCcEEEEEEEEEcCCeeeeEEEEEcCCCCCCCccccCCcHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 019538 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVPRMEDLIPILLHYVKSR 207 (339)
Q Consensus 128 ~~vviDiETTGl~p~~~~IIEIgav~v~~g~i~~f~~lV~P~~~i~~~~itGIt~e~l~~~~ap~~~evl~~~~~~l~~~ 207 (339)
..+++|+|+.++++..++++.|++.. +++. | ++ + +++..|.+|+.+
T Consensus 11 ~~valDtE~~~~~~~~a~Lvgi~la~--~~~a--~--~i------------------------~---~~l~~l~~~l~d- 56 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLALAAAR--GGRV--H--RA------------------------P---EPYKALRDLKEA- 56 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEEEEEEE--TTEE--E--EC------------------------S---SHHHHHTTCSSB-
T ss_pred CceEEEEEecCCccCcccEEEEEEEc--CCEE--E--Ee------------------------h---hhHHHHHHHHcC-
Confidence 57899999999999888888877762 3321 1 11 0 244566677753
Q ss_pred CCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCCCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHHHhCCCCCCCCCC
Q 019538 208 QKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHR 287 (339)
Q Consensus 208 ~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~~gI~~~~~aH~ 287 (339)
..+|+||+ +||+. ++|+... ..+||+.+++.+.|. +++|++|++.|.... .|.
T Consensus 57 ------~~kV~hn~-K~Dl~-------~~Gi~~~---~~fDT~laAyLL~p~-------~~~L~~La~~yl~~~---gk~ 109 (540)
T 4dfk_A 57 ------RGLLAKDL-SVLAL-------REGLGLP---PGDDPMLLAYLLDPS-------NTTPEGVARRYGGEW---TEE 109 (540)
T ss_dssp ------CSTTHHHH-HHHHH-------HTTCCCC---BCCCHHHHHHHHCTT-------CCCHHHHHHHHTSCC---CSC
T ss_pred ------CCEEEecc-HHHHH-------HcCCCCC---cceeHHHHHHHhCCC-------CCCHHHHHHHHhhhh---ccc
Confidence 46899999 89997 5788754 479999999999875 579999999886432 467
Q ss_pred hHHHHHHHHHHHHHHHHhh-c-cCHHHHHHhcCC
Q 019538 288 AMADVNCLSLILQRLTFDL-K-LSLCDLIERGFT 319 (339)
Q Consensus 288 Al~DA~~ta~L~~~l~~~l-~-~tl~~L~~~s~~ 319 (339)
|..||.++++|+..+..++ + ..+.+|+...+.
T Consensus 110 a~~DA~~t~~L~~~L~~~L~~~~~~~~~~~~iE~ 143 (540)
T 4dfk_A 110 AGERAALSERLFANLWGRLEGEERLLWLYREVER 143 (540)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 9999999999999999999 4 467777655443
No 27
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=98.34 E-value=1.3e-05 Score=75.88 Aligned_cols=181 Identities=14% Similarity=0.171 Sum_probs=119.6
Q ss_pred hhhhhhhhccCccCCCcEEEEEEecCCCCCC-----C----------------CcEEEEEEEEEc-CCe------eeeEE
Q 019538 112 DIEQIIAENKDLAKLVTAIVFDIETTGFSRE-----N----------------ERIIEIAFQDLL-GGE------NSTFQ 163 (339)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~vviDiETTGl~p~-----~----------------~~IIEIgav~v~-~g~------i~~f~ 163 (339)
+++++++.-..+-+-.+||++|+|.+|+... . -.|||+|....+ +|. .-.|+
T Consensus 30 Nleee~~~Ir~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~~p~~~~twqFN 109 (333)
T 2p51_A 30 NLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFN 109 (333)
T ss_dssp THHHHHHHHHHHTTTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEE
T ss_pred HHHHHHHHHHHHHhhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCCCCCceeEEEE
Confidence 3455554444433336899999999998521 1 148999998876 232 24566
Q ss_pred EEEcCCCCCCC------ccccCCcHHhhcCCCCCCHHHHHHHHHHHHHhc-CCCCCceEEEEECCcchhHHHHHHHHHhc
Q 019538 164 TLVNPKRQVPN------AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSR-QKPGGYILFVAHNARSFDVPFLINEFSRC 236 (339)
Q Consensus 164 ~lV~P~~~i~~------~~itGIt~e~l~~~~ap~~~evl~~~~~~l~~~-~~~~~~~~lV~hN~~~FD~~fL~~~~~r~ 236 (339)
...+....+-. -.-+||.-+...+.|.+ ..+ |.+.+... .....+..+|++++ .+|+.+|.+.+...
T Consensus 110 F~F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~-~~~----F~elL~~SGLvl~~~V~Witfhg-~YDfgyLlK~Lt~~ 183 (333)
T 2p51_A 110 FTFNLQDDMYAPESIELLTKSGIDFKKHQEVGIE-PAD----FAELLIGSGLVLQEEVTWITFHS-GYDFAYLLKAMTQI 183 (333)
T ss_dssp BCCCTTTSCCCHHHHHHHHHTTCCHHHHHHHCBC-HHH----HHHHHHTTTSSSCTTCEEEESSC-HHHHHHHHHHHHCS
T ss_pred EEECCcccccCHHHHHHHHHcCCChhHHHHcCCC-HHH----HHHHHHhcCcccCCCceEEEecc-chhHHHHHHHhcCC
Confidence 66444433322 24478887777665776 333 33333321 11113578999999 99999998887633
Q ss_pred CCCCC-----------CCCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 019538 237 SYEVP-----------NNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYYGIPLVGSAHRAMADVNCLSLILQRLTFD 305 (339)
Q Consensus 237 gl~~p-----------~~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~~gI~~~~~aH~Al~DA~~ta~L~~~l~~~ 305 (339)
.++.. ++ .++|+..+++... . + .-+|+++++.+|++..|..|.|-.|++.|+.+|.+|.+.
T Consensus 184 ~LP~~~~eF~~~l~~~FP-~iYD~K~l~~~~~-~----l--~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~ 255 (333)
T 2p51_A 184 PLPAEYEEFYKILCIYFP-KNYDIKYIMKSVL-N----N--SKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSR 255 (333)
T ss_dssp CCCSSHHHHHHHHHHHSS-SEEEHHHHHTTTT-C----C--CCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCc-chhhHHHHHHHhc-c----c--cCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHH
Confidence 33211 11 3778887776542 1 2 458999999999998889999999999999999999875
Q ss_pred h
Q 019538 306 L 306 (339)
Q Consensus 306 l 306 (339)
.
T Consensus 256 ~ 256 (333)
T 2p51_A 256 Y 256 (333)
T ss_dssp H
T ss_pred h
Confidence 3
No 28
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=98.33 E-value=1.9e-05 Score=73.52 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=120.1
Q ss_pred hhhhhhhhhccCccCCCcEEEEEEecCCCC--CC-------------------CCcEEEEEEEEEc-CCe-------eee
Q 019538 111 YDIEQIIAENKDLAKLVTAIVFDIETTGFS--RE-------------------NERIIEIAFQDLL-GGE-------NST 161 (339)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~vviDiETTGl~--p~-------------------~~~IIEIgav~v~-~g~-------i~~ 161 (339)
.++.+.++.-..+-+..+||++|+|.+|+. |. .-.|||+|....+ +|. .-.
T Consensus 22 ~Nl~~e~~~I~~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~~~wq 101 (289)
T 1uoc_A 22 SNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQ 101 (289)
T ss_dssp TTHHHHHHHHHHHTTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEE
T ss_pred hhHHHHHHHHHHHHhhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCcCCCCcceEE
Confidence 335555554444333369999999999984 21 1259999998776 232 145
Q ss_pred EEEEEcCCCCCCC------ccccCCcHHhhcCCCCCCHHHHHHHHHHHHHhc-CCCCCceEEEEECCcchhHHHHHHHHH
Q 019538 162 FQTLVNPKRQVPN------AHVHGITTDMVCKPDVPRMEDLIPILLHYVKSR-QKPGGYILFVAHNARSFDVPFLINEFS 234 (339)
Q Consensus 162 f~~lV~P~~~i~~------~~itGIt~e~l~~~~ap~~~evl~~~~~~l~~~-~~~~~~~~lV~hN~~~FD~~fL~~~~~ 234 (339)
|+...+....+-. -.-+||.-+...+.|.+. . .|.+.+... ....++..+|++++ .+|..+|.+.+.
T Consensus 102 FNF~F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~-~----~F~ell~~sgLvl~~~v~Witfhg-~yDfgyL~k~Lt 175 (289)
T 1uoc_A 102 FNFEFDPKKEIMSTESLELLRKSGINFEKHENLGIDV-F----EFSQLLMDSGLMMDDSVTWITYHA-AYDLGFLINILM 175 (289)
T ss_dssp EEBCCCTTCCCCCHHHHHHHHHTTCCHHHHHHHCBCH-H----HHHHHHHTSSCSSCTTSEEEESST-THHHHHHHHHHT
T ss_pred EEEEECCccccccHHHHHHHHHcCCChhHHHHcCCCH-H----HHHHHHHhcCCccCCCceEEEccC-cchHHHHHHHhc
Confidence 6665444333322 245788877766557763 3 334444321 11113578999999 899999988876
Q ss_pred hcCCCCC-----------CCCceeeHHHHHHHHHhcCC--------CCCCCCCCHHHHHHHhCCCCCCCCCChHHHHHHH
Q 019538 235 RCSYEVP-----------NNWLFMDTLTLARELMKSGG--------SNLPSKVSLQALREYYGIPLVGSAHRAMADVNCL 295 (339)
Q Consensus 235 r~gl~~p-----------~~~~~iDtl~lar~l~~~~~--------~~l~~~~~L~~L~~~~gI~~~~~aH~Al~DA~~t 295 (339)
...++.. ++ .++|+..+++....-.+ ...+...+|+++++.+|++-.|..|.|-+|++.|
T Consensus 176 ~~~LP~~~~~F~~~l~~~FP-~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsDSllT 254 (289)
T 1uoc_A 176 NDSMPNNKEDFEWWVHQYMP-NFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLM 254 (289)
T ss_dssp TSCCCSSHHHHHHHHHHHCS-SEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHhCc-cceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccccHHHHHHH
Confidence 4333321 11 47899988876532111 0011156899999999998888899999999999
Q ss_pred HHHHHHHHHhh
Q 019538 296 SLILQRLTFDL 306 (339)
Q Consensus 296 a~L~~~l~~~l 306 (339)
+.+|.+|....
T Consensus 255 ~~~F~kl~~~~ 265 (289)
T 1uoc_A 255 LLSFCQLSKLS 265 (289)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998653
No 29
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=98.20 E-value=1.6e-05 Score=87.09 Aligned_cols=161 Identities=15% Similarity=0.184 Sum_probs=100.3
Q ss_pred CcEEEEEEecCCCC------C----CCCcEEEEEEEEEcCCeeeeEEEEE-cCCC-CCCC--------ccccCCcHHhhc
Q 019538 127 VTAIVFDIETTGFS------R----ENERIIEIAFQDLLGGENSTFQTLV-NPKR-QVPN--------AHVHGITTDMVC 186 (339)
Q Consensus 127 ~~~vviDiETTGl~------p----~~~~IIEIgav~v~~g~i~~f~~lV-~P~~-~i~~--------~~itGIt~e~l~ 186 (339)
-+++.|||||++.. | ..|+||.|+++....+.......+| .... ..+. ....|.. +.
T Consensus 320 lrvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~~~~~v~~l~~~~~~~~f~~~~k~~~~~~~~---V~ 396 (1193)
T 2gv9_A 320 YKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTPV---VL 396 (1193)
T ss_dssp CEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCEEEEEEEEESCCCCCHHHHHHHHHTTCCCCE---EE
T ss_pred ceEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCcceEEEEECCCcCCcchhhhhcccccCCCce---EE
Confidence 48999999997541 2 2488999998765422111111122 1111 1111 0011211 22
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCceEEEEECCcchhHHHHHHHH-HhcCCCCCC-----------------------
Q 019538 187 KPDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEF-SRCSYEVPN----------------------- 242 (339)
Q Consensus 187 ~~~ap~~~evl~~~~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~-~r~gl~~p~----------------------- 242 (339)
..++..+.+..|.+++... ++.++||||+..||+++|...+ ..+|+.++.
T Consensus 397 --~~~sE~eLL~~F~~~I~~~----DPDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~ 470 (1193)
T 2gv9_A 397 --EFDSEFEMLLAFMTLVKQY----GPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKR 470 (1193)
T ss_dssp --EESSHHHHHHHHHHHHHHH----CCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC---------
T ss_pred --ecCCHHHHHHHHHHHHHhc----CCCEEEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeecccccccccc
Confidence 2345788999999999986 5679999999999999998885 456665431
Q ss_pred ------CCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHHH-hCCCCCCCC-------------------CChHHHHHHHH
Q 019538 243 ------NWLFMDTLTLARELMKSGGSNLPSKVSLQALREY-YGIPLVGSA-------------------HRAMADVNCLS 296 (339)
Q Consensus 243 ------~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~-~gI~~~~~a-------------------H~Al~DA~~ta 296 (339)
....+|++.+.+... .+. +++|++++++ +|....+.. +-.+.||..+.
T Consensus 471 ~~~~i~GRv~lDl~~~~~~~~-----kl~-sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~ 544 (1193)
T 2gv9_A 471 SKIKVNGMVNIDMYGIITDKI-----KLS-SYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVG 544 (1193)
T ss_dssp -CEEETTBEEEEHHHHHTTTC-----CCS-CCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEcCeEeehHHHHHHHHh-----ccC-CCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Confidence 013678888765433 345 9999999975 665433211 11257888999
Q ss_pred HHHHHH
Q 019538 297 LILQRL 302 (339)
Q Consensus 297 ~L~~~l 302 (339)
+|+.++
T Consensus 545 ~L~~kl 550 (1193)
T 2gv9_A 545 QLFFKF 550 (1193)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988876
No 30
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=98.17 E-value=1.6e-06 Score=88.64 Aligned_cols=145 Identities=12% Similarity=0.032 Sum_probs=103.1
Q ss_pred cEEEEEEecCCCCCCCCcEEEEEEEEEcCCeeeeEEEEEcCCCCCCCccccCCcHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 019538 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVPRMEDLIPILLHYVKSR 207 (339)
Q Consensus 128 ~~vviDiETTGl~p~~~~IIEIgav~v~~g~i~~f~~lV~P~~~i~~~~itGIt~e~l~~~~ap~~~evl~~~~~~l~~~ 207 (339)
.-.++|+|++|.++..++++.|++.. ++. ..||.+. . ..++..|.+|+.+
T Consensus 30 ~~~aldtE~~~~~~~~a~Lvgisla~--~~~----a~yIp~~--------------~---------~~~l~~Lk~lLed- 79 (592)
T 3pv8_A 30 DKAALVVEVVEENYHDAPIVGIAVVN--EHG----RFFLRPE--------------T---------ALADPQFVAWLGD- 79 (592)
T ss_dssp SEEEEEEECCSSSCTTCCCCEEEEEE--TTE----EEEECHH--------------H---------HTTCHHHHHHHTC-
T ss_pred cCcEEEEEEcCCccCcccEEEEEEEc--CCc----eEEEccc--------------h---------hhHHHHHHHHHhC-
Confidence 45699999999999888888777653 221 2344210 0 1234567778875
Q ss_pred CCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCCCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHHHh-CCCCC----
Q 019538 208 QKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYY-GIPLV---- 282 (339)
Q Consensus 208 ~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~~-gI~~~---- 282 (339)
.....|+||+ +||+.+|. ++|+..+. .++||+.+++.+.|... +++|++|++.| |+...
T Consensus 80 ----~~i~KV~hn~-K~Dl~vL~----~~Gi~l~g--~~fDTmLAAYLL~p~~~-----~~~L~~La~~yLg~~l~~~ee 143 (592)
T 3pv8_A 80 ----ETKKKSMFDS-KRAAVALK----WKGIELCG--VSFDLLLAAYLLDPAQG-----VDDVAAAAKMKQYEAVRPDEA 143 (592)
T ss_dssp ----TTSEEEESSH-HHHHHHHH----HTTCCCCC--EEEEHHHHHHHHCGGGC-----CCSHHHHHGGGTCCSSCCHHH
T ss_pred ----CCCeEEEech-HHHHHHHH----HcCCCCCC--ccchHHHHHHHcCCCCC-----CCCHHHHHHHHcCCCCchHHH
Confidence 3468999999 89998884 47887653 48999999999998653 79999998765 44321
Q ss_pred ----C----------CCCChHHHHHHHHHHHHHHHHhhc-cCHHHHHHhcC
Q 019538 283 ----G----------SAHRAMADVNCLSLILQRLTFDLK-LSLCDLIERGF 318 (339)
Q Consensus 283 ----~----------~aH~Al~DA~~ta~L~~~l~~~l~-~tl~~L~~~s~ 318 (339)
| ..+.|..||.++.+|+..|..++. ..+.+|+...+
T Consensus 144 ~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e~~l~~l~~~~E 194 (592)
T 3pv8_A 144 VYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELE 194 (592)
T ss_dssp HHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTH
T ss_pred hcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHH
Confidence 0 013367899999999999998886 45666665443
No 31
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=98.02 E-value=3.6e-05 Score=81.85 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=96.8
Q ss_pred CcEEEEEEec-CCC---CCC----CCcEEEEEEEEEcCCeeeeEEEEEcCCCCCCC-ccccCCcHHhhcCCCCCCHHHHH
Q 019538 127 VTAIVFDIET-TGF---SRE----NERIIEIAFQDLLGGENSTFQTLVNPKRQVPN-AHVHGITTDMVCKPDVPRMEDLI 197 (339)
Q Consensus 127 ~~~vviDiET-TGl---~p~----~~~IIEIgav~v~~g~i~~f~~lV~P~~~i~~-~~itGIt~e~l~~~~ap~~~evl 197 (339)
.++++||||| ||. -|. .+.||+||++. .+|. .-...+++...-.+ ..+.| ..+. ..++..+.+
T Consensus 190 l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~~-~~g~--~~~~~~~~~~~~~~~~~i~~---~~v~--~~~~E~~LL 261 (847)
T 1s5j_A 190 IKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAG-SDGL--KKVLVLNRNDVNEGSVKLDG---ISVE--RFNTEYELL 261 (847)
T ss_dssp CCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEE-TTSC--EEEEEECSSCCCCCCEEETT---EEEE--EESSHHHHH
T ss_pred ceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEEc-cCCC--cEEEEEeCCcccccccCCCC---CeEE--EeCCHHHHH
Confidence 4899999999 743 222 26899999973 2232 12344554321000 11222 1122 234578999
Q ss_pred HHHHHHHHhcCCCCCceEEEEECCcchhHHHHHHHHHhcCCCC---CC-----------CCceeeHHHHHHH-H---Hhc
Q 019538 198 PILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEV---PN-----------NWLFMDTLTLARE-L---MKS 259 (339)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~---p~-----------~~~~iDtl~lar~-l---~~~ 259 (339)
..|.+++.+. .++||||+..||+++|...+.++|+.. |. ....+|++...+. . +..
T Consensus 262 ~~f~~~i~~~------diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f 335 (847)
T 1s5j_A 262 GRFFDILLEY------PIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAF 335 (847)
T ss_dssp HHHHHHHTTC------SEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTS
T ss_pred HHHHHHhccC------CEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcc
Confidence 9999999752 489999999999999999999998852 11 1235788766532 1 110
Q ss_pred CCCCCCCCCCHHHHHH-HhCCCCCCC------------CCChHHHHHHHHHHH
Q 019538 260 GGSNLPSKVSLQALRE-YYGIPLVGS------------AHRAMADVNCLSLIL 299 (339)
Q Consensus 260 ~~~~l~~~~~L~~L~~-~~gI~~~~~------------aH~Al~DA~~ta~L~ 299 (339)
...+. +++|+++++ .+|...... ++-.+.||..+.+|+
T Consensus 336 -~~kl~-sysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 336 -EGKYN-EYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp -TTCCS-SCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred -ccccc-cccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 01234 899999998 566443210 011367999999885
No 32
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=97.89 E-value=8.6e-05 Score=79.07 Aligned_cols=166 Identities=18% Similarity=0.276 Sum_probs=103.8
Q ss_pred CcEEEEEEecCCCC----CC--CCcEEEEEEEEEcCCeeeeEEEEEcCCCCCCC-----------ccccCCcHHhhcC--
Q 019538 127 VTAIVFDIETTGFS----RE--NERIIEIAFQDLLGGENSTFQTLVNPKRQVPN-----------AHVHGITTDMVCK-- 187 (339)
Q Consensus 127 ~~~vviDiETTGl~----p~--~~~IIEIgav~v~~g~i~~f~~lV~P~~~i~~-----------~~itGIt~e~l~~-- 187 (339)
.+.+.+|||++.-+ |. .++|+.|+..+-.+.+.-.|..+-.|.....+ ..-..+..+.+..
T Consensus 108 ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 187 (903)
T 3qex_A 108 IRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIIDKII 187 (903)
T ss_dssp SCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHHTTEE
T ss_pred ccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCCEEEEEEeeccccccccccccccccccccccccccccccCCCeE
Confidence 58999999987532 22 57899999997666543222222222111111 0001122232220
Q ss_pred -CCCCCHHHHHHHHHHHHHhcCCCCCceEEEEECCcchhHHHHHHHHHh-cCCCC-----CC------------------
Q 019538 188 -PDVPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSR-CSYEV-----PN------------------ 242 (339)
Q Consensus 188 -~~ap~~~evl~~~~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r-~gl~~-----p~------------------ 242 (339)
...++..+.+..|.+++... .+.+++|||+..||+++|...+.. +|+.. +.
T Consensus 188 v~~f~sE~eLL~~F~~~I~~~----DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~ 263 (903)
T 3qex_A 188 YMPFDNEKELLMEYLNFWQQK----TPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREII 263 (903)
T ss_dssp EEEESSHHHHHHHHHHHHHHT----CCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHHh----CCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCceeE
Confidence 01245788999999999976 567999999999999999888876 46421 00
Q ss_pred ---CCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHHHh-CCCCCCCCCC----------------hHHHHHHHHHHHHH
Q 019538 243 ---NWLFMDTLTLARELMKSGGSNLPSKVSLQALREYY-GIPLVGSAHR----------------AMADVNCLSLILQR 301 (339)
Q Consensus 243 ---~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~~-gI~~~~~aH~----------------Al~DA~~ta~L~~~ 301 (339)
....+|++.+.+.+.- ..+. +++|+++++++ |..... -|. .+.||..+.+|+.+
T Consensus 264 ~i~GRv~lDl~~~~k~~~~---~~l~-SYsLd~VA~~lLg~~K~d-~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 264 TLFGISVLDYIDLYKKFSF---TNQP-SYSLDYISEFELNVGKLK-YDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp EETTCEECCHHHHHHHHSC---CCCS-CCCHHHHHHHHHCCCCCC-CSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCeEEeeHHHHHHHhCc---cCcC-CCCHHHHHHHHcCCCccc-cHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 1126899998876421 1244 99999998765 443321 111 26799999999987
No 33
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=97.82 E-value=0.00011 Score=70.99 Aligned_cols=134 Identities=25% Similarity=0.217 Sum_probs=89.5
Q ss_pred CcEEEEEEecCCCCCCCCcEEEEEEEEEcCCeeeeEEEEEcCCCCCCCccccCCcHHhhcCCCCCCHHHHHHHHHHHHHh
Q 019538 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVPRMEDLIPILLHYVKS 206 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~~~IIEIgav~v~~g~i~~f~~lV~P~~~i~~~~itGIt~e~l~~~~ap~~~evl~~~~~~l~~ 206 (339)
..+|+||+|+++..+..+.+.-|.+.. ++. ..++.|. .+ . .+..|.+++.+
T Consensus 22 ~~~va~D~E~~~~~~~~~~l~liqla~--~~~----~~lid~~---------~l-----~---------~~~~L~~ll~d 72 (375)
T 1yt3_A 22 FPAIALDTEFVRTRTYYPQLGLIQLFD--GEH----LALIDPL---------GI-----T---------DWSPLKAILRD 72 (375)
T ss_dssp SSEEEEEEEEECCSCSSCEEEEEEEEC--SSC----EEEECGG---------GC-----S---------CCHHHHHHHHC
T ss_pred CCeEEEEeeecCCCcCCCceEEEEEec--CCc----EEEEeCC---------CC-----C---------ChHHHHHHHcC
Confidence 368999999998865555555544432 221 1223321 01 1 12346667775
Q ss_pred cCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCCCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHHHh-CCCCCCC-
Q 019538 207 RQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYY-GIPLVGS- 284 (339)
Q Consensus 207 ~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~~-gI~~~~~- 284 (339)
...+.|+||+ ++|+.+|.+. +|+... .++||+.+++.+.+.. +++|++|++.| |+.....
T Consensus 73 -----~~i~Kv~h~~-k~Dl~~L~~~---~Gi~~~---~~fDt~lAa~lL~~~~------~~~L~~L~~~~l~~~l~K~~ 134 (375)
T 1yt3_A 73 -----PSITKFLHAG-SEDLEVFLNV---FGELPQ---PLIDTQILAAFCGRPM------SWGFASMVEEYSGVTLDKSE 134 (375)
T ss_dssp -----TTSEEEESSC-HHHHHHHHHH---HSSCCS---SEEEHHHHHHHTTCCT------TCCHHHHHHHHHCCCCCCTT
T ss_pred -----CCceEEEeeH-HHHHHHHHHH---cCCCCC---cEEEcHHHHHHcCCCC------ChhHHHHHHHHcCCCCCCCc
Confidence 3467999999 8999998642 577643 4899999998875521 78999999866 7654311
Q ss_pred --------------CCChHHHHHHHHHHHHHHHHhhc
Q 019538 285 --------------AHRAMADVNCLSLILQRLTFDLK 307 (339)
Q Consensus 285 --------------aH~Al~DA~~ta~L~~~l~~~l~ 307 (339)
.+.|..||..+..|+..|..++.
T Consensus 135 ~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~ 171 (375)
T 1yt3_A 135 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 (375)
T ss_dssp TTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01256899999999999998886
No 34
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=97.79 E-value=0.00016 Score=71.02 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=90.0
Q ss_pred CcEEEEEEecCCCCCCCCcEEEEEEEEEcCCeeeeEEEEEcCCCCCCCccccCCcHHhhcCCCCCCHHHHHHHHHHHHHh
Q 019538 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVPRMEDLIPILLHYVKS 206 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~~~IIEIgav~v~~g~i~~f~~lV~P~~~i~~~~itGIt~e~l~~~~ap~~~evl~~~~~~l~~ 206 (339)
...|+||+|+++..+..+++.-|.+.. .++ ..+|.|.. + .+.+..|.+++.+
T Consensus 129 ~~~vavDtE~~~~~~~~~~l~lIQLa~-~~~-----~~lidpl~---------l-------------~~~l~~L~~lL~d 180 (428)
T 3saf_A 129 CQEFAVNLEHHSYRSFLGLTCLMQIST-RTE-----DFIIDTLE---------L-------------RSDMYILNESLTD 180 (428)
T ss_dssp CSEEEEEEEEECTTCSSCEEEEEEEEC-SSC-----EEEEETTT---------T-------------GGGGGGGHHHHTC
T ss_pred CCeEEEEEEecCCCCCCCeEEEEEEEe-CCc-----EEEEEecc---------c-------------hhhHHHHHHHHcC
Confidence 478999999999887667655444432 111 23454431 0 0122345556764
Q ss_pred cCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCCCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHHH-hCCCCCCC-
Q 019538 207 RQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREY-YGIPLVGS- 284 (339)
Q Consensus 207 ~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~-~gI~~~~~- 284 (339)
...+.|+||+ .+|+.+|.+ .+|+... .++||+.+++.+.+. .++|++|++. +|+.....
T Consensus 181 -----p~i~KV~H~~-k~Dl~~L~~---~~Gi~~~---~~fDT~lAa~lL~~~-------~~gL~~Lv~~~Lg~~l~K~~ 241 (428)
T 3saf_A 181 -----PAIVKVFHGA-DSDIEWLQK---DFGLYVV---NMFDTHQAARLLNLG-------RHSLDHLLKLYCNVDSNKQY 241 (428)
T ss_dssp -----TTSEEEESSC-HHHHHHHHH---HHCCCCS---SEEEHHHHHHHTTCS-------CCSHHHHHHHHHCCCCCCTT
T ss_pred -----CCceEEEeeh-HHHHHHHHH---HcCCCcC---ceeechhHHHHhCCC-------CCCHHHHHHHHcCCCCCccc
Confidence 3568899999 899998854 3577642 379999998876432 6799999764 57654310
Q ss_pred --------------CCChHHHHHHHHHHHHHHHHhhc
Q 019538 285 --------------AHRAMADVNCLSLILQRLTFDLK 307 (339)
Q Consensus 285 --------------aH~Al~DA~~ta~L~~~l~~~l~ 307 (339)
.+.|..||..+..||..|..++.
T Consensus 242 ~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~ 278 (428)
T 3saf_A 242 QLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMW 278 (428)
T ss_dssp TTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13367899999999999988876
No 35
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=97.74 E-value=0.00044 Score=72.82 Aligned_cols=150 Identities=15% Similarity=0.193 Sum_probs=95.5
Q ss_pred CcEEEEEEecCCCCCCCCcEEEEEEEEEcCCeeeeEEEEEcCCCCCCCccccCCcHHhhcCCCCCCHHHHHHHHHHHHHh
Q 019538 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVPRMEDLIPILLHYVKS 206 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~~~IIEIgav~v~~g~i~~f~~lV~P~~~i~~~~itGIt~e~l~~~~ap~~~evl~~~~~~l~~ 206 (339)
-+++.||||+.+ ..+|+.||... .+ ....-.+-.|..+- .+.+. .+. ..++..+.+..|.+++..
T Consensus 153 lrilsfDIE~~~----~g~i~~I~~~~--~~-~~~v~~l~~~~~~~---~~~~~---~V~--~f~~E~~lL~~f~~~i~~ 217 (786)
T 3k59_A 153 LKWVSIDIETTR----HGELYCIGLEG--CG-QRIVYMLGPENGDA---SSLDF---ELE--YVASRPQLLEKLNAWFAN 217 (786)
T ss_dssp CCEEEEEEEECT----TSCEEEEEEEE--TT-EEEEEEESSCCSCC---TTCSS---EEE--EESSHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEEcC----CCCEEEEEecC--CC-CCeEEEEecCCCCC---CCCCc---eEE--EeCCHHHHHHHHHHHHHH
Confidence 589999999984 34699998542 11 11111111121110 01111 122 223567899999999998
Q ss_pred cCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCC------------------------CCceeeHHHHHHHHHhcCCC
Q 019538 207 RQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPN------------------------NWLFMDTLTLARELMKSGGS 262 (339)
Q Consensus 207 ~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~------------------------~~~~iDtl~lar~l~~~~~~ 262 (339)
. ++.+++|||+..||+++|...+..+|++... ....+|++.+.+... .
T Consensus 218 ~----dPDii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~----~ 289 (786)
T 3k59_A 218 Y----DPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAF----W 289 (786)
T ss_dssp H----CCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTT----C
T ss_pred c----CCCEEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhcc----C
Confidence 6 4569999999999999999999887765310 012578887776421 1
Q ss_pred CCCCCCCHHHHHHHh-CCCCCCCCCC----------------------hHHHHHHHHHHHHHH
Q 019538 263 NLPSKVSLQALREYY-GIPLVGSAHR----------------------AMADVNCLSLILQRL 302 (339)
Q Consensus 263 ~l~~~~~L~~L~~~~-gI~~~~~aH~----------------------Al~DA~~ta~L~~~l 302 (339)
.+. +++|+++++++ |.... .|. .+.||..+.+|+.++
T Consensus 290 ~l~-SysL~~Va~~~Lg~~K~--~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 290 NFS-SFSLETVAQELLGEGKS--IDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp CCS-CCSHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHhCCCCc--ccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 345 99999999874 54322 122 267999999998874
No 36
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=97.61 E-value=0.00058 Score=66.72 Aligned_cols=134 Identities=20% Similarity=0.199 Sum_probs=87.5
Q ss_pred CcEEEEEEecCCCCCCCCcEEEEEEEEEcCCeeeeEEEEEcCCCCCCCccccCCcHHhhcCCCCCCHHHHHHHHHHHHHh
Q 019538 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVPRMEDLIPILLHYVKS 206 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~~~IIEIgav~v~~g~i~~f~~lV~P~~~i~~~~itGIt~e~l~~~~ap~~~evl~~~~~~l~~ 206 (339)
..+|+||+|+++..+..+.+.-|.+.. ++. ..++.|- .+ . +.+..|.+++.+
T Consensus 106 ~~~vavDtE~~~~~~~~~~l~liQla~--~~~----~ylid~l---------~l-----~--------~~l~~L~~lL~d 157 (410)
T 2hbj_A 106 TKEIAVDLEHHDYRSYYGIVCLMQIST--RER----DYLVDTL---------KL-----R--------ENLHILNEVFTN 157 (410)
T ss_dssp CSEEEEEEEEECSSSSSCEEEEEEEEC--SSC----EEEEETT---------TT-----T--------TTGGGGHHHHTC
T ss_pred CCceEEEeeecCCcCCCCcEEEEEEEE--CCc----EEEEech---------hh-----h--------hhHHHHHHHHcC
Confidence 368999999998765455554433332 221 1223321 01 0 112245556764
Q ss_pred cCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCCCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHHHh-CCCCCCC-
Q 019538 207 RQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYY-GIPLVGS- 284 (339)
Q Consensus 207 ~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~~-gI~~~~~- 284 (339)
...+.|+||+ ++|+.+|.+. +|+... .++||+.+++.+.+. +++|++|++.| |+.....
T Consensus 158 -----~~i~KV~h~~-k~Dl~~L~~~---~Gi~~~---~~fDt~lAa~LL~~~-------~~~L~~L~~~~lg~~l~K~~ 218 (410)
T 2hbj_A 158 -----PSIVKVFHGA-FMDIIWLQRD---LGLYVV---GLFDTYHASKAIGLP-------RHSLAYLLENFANFKTSKKY 218 (410)
T ss_dssp -----TTSEEEESSC-HHHHHHHHHH---HCCCCS---SEEEHHHHHHHHTCS-------CCSHHHHHHHHSCCCCCCTT
T ss_pred -----CCceEEEEeh-HHHHHHHHHH---cCCCcC---CEEEcHHHHHHhCCC-------ccCHHHHHHHHcCCCCCccc
Confidence 3568999999 8999998653 477643 289999999877532 68999999876 6554310
Q ss_pred --------------CCChHHHHHHHHHHHHHHHHhhc
Q 019538 285 --------------AHRAMADVNCLSLILQRLTFDLK 307 (339)
Q Consensus 285 --------------aH~Al~DA~~ta~L~~~l~~~l~ 307 (339)
.+-|..||.++..|+..|..++.
T Consensus 219 ~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~ 255 (410)
T 2hbj_A 219 QLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLI 255 (410)
T ss_dssp TTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11267899999999999999886
No 37
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=97.34 E-value=0.0002 Score=63.02 Aligned_cols=92 Identities=18% Similarity=0.056 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCCCceee-HHHHHHHHHhcCCCCCCCCCCHHHHHHHh
Q 019538 199 ILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMD-TLTLARELMKSGGSNLPSKVSLQALREYY 277 (339)
Q Consensus 199 ~~~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iD-tl~lar~l~~~~~~~l~~~~~L~~L~~~~ 277 (339)
.|.+++.+ .....|+||+ ++|+..|.+. +|+... .++| |+..++.+.+.. +++|+.|++.+
T Consensus 87 ~L~~lL~d-----~~i~Kv~~~~-k~D~~~L~~~---~gi~~~---~~fDlt~lAayll~~~~------~~~L~~L~~~~ 148 (208)
T 2e6m_A 87 GLKMLLEN-----KSIKKAGVGI-EGDQWKLLRD---FDVKLE---SFVELTDVANEKLKCAE------TWSLNGLVKHV 148 (208)
T ss_dssp HHHHHHTC-----TTSEEEESSH-HHHHHHHHHH---HCCCCC---SEEEHHHHHHHHTTCCC------CCCHHHHHHHH
T ss_pred HHHHHhcC-----CCceEEEEee-HHHHHHHHHH---CCCCCC---CEEEHHHHHHHHccCCC------ChhHHHHHHHH
Confidence 45667764 3568999999 8999888642 577643 2899 777777665421 88999999876
Q ss_pred -CCCCCC-----------------CCCChHHHHHHHHHHHHHHHHhhcc
Q 019538 278 -GIPLVG-----------------SAHRAMADVNCLSLILQRLTFDLKL 308 (339)
Q Consensus 278 -gI~~~~-----------------~aH~Al~DA~~ta~L~~~l~~~l~~ 308 (339)
|..... ..+-|..||.++..|+..|..++..
T Consensus 149 l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~ 197 (208)
T 2e6m_A 149 LGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDT 197 (208)
T ss_dssp HSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred cCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 654310 1122678999999999999988763
No 38
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=96.99 E-value=0.003 Score=64.31 Aligned_cols=127 Identities=14% Similarity=0.190 Sum_probs=82.3
Q ss_pred CcEEEEEEecCCCCCCCCcEEEEEEEEEcCCeeeeEEEEEcCCCCCCCccccCCcHHhhcCCCCCCHHHHHHHHHHHHHh
Q 019538 127 VTAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVPRMEDLIPILLHYVKS 206 (339)
Q Consensus 127 ~~~vviDiETTGl~p~~~~IIEIgav~v~~g~i~~f~~lV~P~~~i~~~~itGIt~e~l~~~~ap~~~evl~~~~~~l~~ 206 (339)
..++++|+||+. ++..+.++.+|+.. ++....|.. . .. +.+|.+|+..
T Consensus 6 ~~i~~~D~Et~~-d~~~~~~~~i~~~~--~~~~~~~~~---------------------~----~~----l~~fi~~~~~ 53 (575)
T 2py5_A 6 RKMYSCAFETTT-KVEDCRVWAYGYMN--IEDHSEYKI---------------------G----NS----LDEFMAWVLK 53 (575)
T ss_dssp CCEEEEEEEECC-BTTBCCEEEEEEEE--SSCTTCEEE---------------------E----SC----HHHHHHHHHH
T ss_pred ceEEEEEEEeec-CCCCCceEEEEEEe--CCceEEEEe---------------------c----hh----HHHHHHHHHH
Confidence 469999999975 55667899999864 221111111 0 11 3456667765
Q ss_pred cCCCCCceEEEEECCcchhHHHHHHHHHhcCCC-----C--C------C-------------------CCceeeHHHHHH
Q 019538 207 RQKPGGYILFVAHNARSFDVPFLINEFSRCSYE-----V--P------N-------------------NWLFMDTLTLAR 254 (339)
Q Consensus 207 ~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~-----~--p------~-------------------~~~~iDtl~lar 254 (339)
+ ++.+++||. .||..+|...+...|.. . . . ...++|++.+.
T Consensus 54 ~-----~~~i~~hNl-~FD~~~l~~~~~~~~~~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~Ds~~~~- 126 (575)
T 2py5_A 54 V-----QADLYFHNL-KFAGAFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLKKL- 126 (575)
T ss_dssp H-----CCEEEETTH-HHHHHHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHHHS-
T ss_pred c-----CCEEEEECh-hhhHHHHHHHHHHhCcccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEEEhHhhh-
Confidence 4 357888999 99999999998887511 0 0 0 12345666552
Q ss_pred HHHhcCCCCCCCCCCHHHHHHHhCCCCCC-----C-------------CCChHHHHHHHHHHHHHHHH
Q 019538 255 ELMKSGGSNLPSKVSLQALREYYGIPLVG-----S-------------AHRAMADVNCLSLILQRLTF 304 (339)
Q Consensus 255 ~l~~~~~~~l~~~~~L~~L~~~~gI~~~~-----~-------------aH~Al~DA~~ta~L~~~l~~ 304 (339)
..+|+.+++.|+++... . .+-.+.||..+++++.....
T Consensus 127 ------------~~SL~~~a~~f~~~~~K~~~py~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~f~ 182 (575)
T 2py5_A 127 ------------PFPVKKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQFK 182 (575)
T ss_dssp ------------CSCHHHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------hhhHHHHHHHhCCcccCCccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999876321 0 11147899999998887643
No 39
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=96.69 E-value=0.006 Score=61.14 Aligned_cols=86 Identities=26% Similarity=0.289 Sum_probs=62.5
Q ss_pred ceEEEEECCcchhHHHHHHHHHhcCCCCCCC------------CceeeHHHHHHH--HHhcCCCCCCCCCCHHHHHHHhC
Q 019538 213 YILFVAHNARSFDVPFLINEFSRCSYEVPNN------------WLFMDTLTLARE--LMKSGGSNLPSKVSLQALREYYG 278 (339)
Q Consensus 213 ~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~------------~~~iDtl~lar~--l~~~~~~~l~~~~~L~~L~~~~g 278 (339)
+.++||||. -+|+.+|-+.|. . +.|.. ..++||..++.. +... .+ ..+|..|.+.+.
T Consensus 276 ~kpiVgHN~-l~Dl~~l~~~F~-~--pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~----~~-~~~L~~l~~~l~ 346 (507)
T 3d45_A 276 GKLVVGHNM-LLDVMHTIHQFY-C--PLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDI----IN-NTSLAELEKRLK 346 (507)
T ss_dssp CCEEEESSC-HHHHHHHHHHHT-C--SCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHH----CC-CCCHHHHHHHTT
T ss_pred CCeEEEech-HHHHHHHHHHhc-C--CCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccc----cC-CCCHHHHHHHHh
Confidence 468999999 899999988775 2 22311 138999987753 2111 12 679999999886
Q ss_pred -----CCC-------------CCCCCChHHHHHHHHHHHHHHHHhhc
Q 019538 279 -----IPL-------------VGSAHRAMADVNCLSLILQRLTFDLK 307 (339)
Q Consensus 279 -----I~~-------------~~~aH~Al~DA~~ta~L~~~l~~~l~ 307 (339)
.+. .+..|.|-.||++|+.+|.+|...+.
T Consensus 347 ~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 347 ETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp STTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 221 23589999999999999999998775
No 40
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=96.62 E-value=0.032 Score=54.81 Aligned_cols=134 Identities=21% Similarity=0.232 Sum_probs=84.3
Q ss_pred cEEEEEEecCCCCCCCCcEEEEEEEEEcCCeeeeEEEEEcCCCCCCCccccCCcHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 019538 128 TAIVFDIETTGFSRENERIIEIAFQDLLGGENSTFQTLVNPKRQVPNAHVHGITTDMVCKPDVPRMEDLIPILLHYVKSR 207 (339)
Q Consensus 128 ~~vviDiETTGl~p~~~~IIEIgav~v~~g~i~~f~~lV~P~~~i~~~~itGIt~e~l~~~~ap~~~evl~~~~~~l~~~ 207 (339)
.+|+||+|++......+++.-|.+.. .++. ..||.|. . +...+. . +..|.+++.+
T Consensus 39 ~~vavDtE~~~~~~~~~~l~liQla~-~~~~----~~lid~l-------------~-~~~~~~-~----l~~L~~lL~d- 93 (440)
T 3cym_A 39 GSLAADAERASGFRYGHEDWLVQFKR-DGAG----IGLLDPQ-------------A-LAAAGA-D----WNDFNRAVGD- 93 (440)
T ss_dssp EEEEEEEEECTTTSSSCCEEEEEEEE-ETTE----EEEECHH-------------H-HHHTTC-C----HHHHHHHHTT-
T ss_pred CeEEEEeeecCCCCCCCCEEEEEEEE-CCCc----EEEEEcC-------------C-cccccc-C----HHHHHHHHCC-
Confidence 67999999987654445554444332 2221 2334320 0 000001 1 3456677763
Q ss_pred CCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCCCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHHHh-CCCCCC---
Q 019538 208 QKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYY-GIPLVG--- 283 (339)
Q Consensus 208 ~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~~-gI~~~~--- 283 (339)
...|+||+ .+|+..|. .+|+... .++||+..++.+.+ . +++|++|++.| |.....
T Consensus 94 ------~~KV~h~~-k~Dl~~L~----~~gi~~~---~~fDt~lAa~lL~~------~-~~gL~~L~~~~lg~~~~K~~~ 152 (440)
T 3cym_A 94 ------AVWILHDS-LQDLPGFD----ELGMEPQ---RLFDTEIAARLLGL------K-RFGLAAVTEHFLGLTLAKEHS 152 (440)
T ss_dssp ------CEEEESSH-HHHHHHHH----HHTCCCC---EEEEHHHHHHHTTC------S-SCSHHHHHHHHHCEECCCCCT
T ss_pred ------CCEEEEcC-HHHHHHHH----HcCCcCC---ceehHHHHHHHhCC------C-CCCHHHHHHHHhCCCcccccc
Confidence 26899999 89998874 4577643 58999877776643 2 78999999877 643221
Q ss_pred ------C------CCChHHHHHHHHHHHHHHHHhhc
Q 019538 284 ------S------AHRAMADVNCLSLILQRLTFDLK 307 (339)
Q Consensus 284 ------~------aH~Al~DA~~ta~L~~~l~~~l~ 307 (339)
. ...|..||.++..||..|..++.
T Consensus 153 ~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~ 188 (440)
T 3cym_A 153 AADWSYRPLPRDWRNYAALDVELLIELETKMRAELK 188 (440)
T ss_dssp TCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12267899999999999988775
No 41
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=95.98 E-value=0.033 Score=54.55 Aligned_cols=102 Identities=19% Similarity=0.174 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCC------------CceeeHHHHHHHHH
Q 019538 190 VPRMEDLIPILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNN------------WLFMDTLTLARELM 257 (339)
Q Consensus 190 ap~~~evl~~~~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~------------~~~iDtl~lar~l~ 257 (339)
+..|..++..+.+ . +.++||||. -.|+-++-+.|. | +.|.. ..++||..++...
T Consensus 267 ~~Gfr~V~~~L~~----s-----~KpiVGHN~-llDl~~l~~~F~--~-pLP~~~~eFk~~i~~lFP~i~DTK~la~~~- 332 (430)
T 2a1r_A 267 AVGFSRVIHAIAN----S-----GKLVIGHNM-LLDVMHTVHQFY--C-PLPADLSEFKEMTTCVFPRLLDTKLMASTQ- 332 (430)
T ss_dssp TSBTHHHHHHHHH----H-----CCEEEESSC-HHHHHHHHHHHT--C-CCCSSHHHHHHHHHHHCSSEEEHHHHHTST-
T ss_pred hhhHHHHHHHHHh----C-----CCceEechh-HHHHHHHHHHhc--c-CCCCCHHHHHHHHHHHCCceeehHHhhhcc-
Confidence 4445555555443 1 348999999 899999877663 2 22311 1489998777432
Q ss_pred hcCCCCCCCCCCHHHHHHHhCCC------------------CCCCCCChHHHHHHHHHHHHHHHHhhc
Q 019538 258 KSGGSNLPSKVSLQALREYYGIP------------------LVGSAHRAMADVNCLSLILQRLTFDLK 307 (339)
Q Consensus 258 ~~~~~~l~~~~~L~~L~~~~gI~------------------~~~~aH~Al~DA~~ta~L~~~l~~~l~ 307 (339)
+- ...++ +.+|.+|.+.+.-. ..+..|.|-.||++|+.+|.+|...+.
T Consensus 333 ~~-~~~~~-~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l~ 398 (430)
T 2a1r_A 333 PF-KDIIN-NTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 398 (430)
T ss_dssp TT-TTTCS-CCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHHG
T ss_pred ch-hhccC-CCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 11 11123 67899998866311 113679999999999999999998764
No 42
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=95.30 E-value=0.034 Score=49.02 Aligned_cols=92 Identities=15% Similarity=0.083 Sum_probs=65.5
Q ss_pred HHHHHHHhcCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCCCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHH-Hh
Q 019538 199 ILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALRE-YY 277 (339)
Q Consensus 199 ~~~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~-~~ 277 (339)
.|.+++.+ .+.+.|||++ .+|+..|.+. +|+.. ..++|+..++....+.. ... ..+|..|++ .+
T Consensus 99 ~L~~lL~d-----~~i~Kvg~~~-~~D~~~L~~~---~g~~~---~~~~Dl~~la~~~lg~~--~~~-~~gL~~Lv~~~l 163 (206)
T 1vk0_A 99 DLYRFFAS-----KFVTFVGVQI-EEDLDLLREN---HGLVI---RNAINVGKLAAEARGTL--VLE-FLGTRELAHRVL 163 (206)
T ss_dssp HHHHHHTC-----SSSEEEESSC-HHHHHHHHHH---HCCCC---SSEEEHHHHHHHHHTCG--GGG-GCCHHHHHHHHH
T ss_pred HHHHHhcC-----CCceEEEecc-HHHHHHHHHh---cCCCc---CCeeeHHHHHHHHcCCC--CCC-CccHHHHHHHHh
Confidence 46667775 4678999999 8999999664 46653 25899987776555421 012 789999976 56
Q ss_pred CCCC-CC--------------CCCChHHHHHHHHHHHHHHHHh
Q 019538 278 GIPL-VG--------------SAHRAMADVNCLSLILQRLTFD 305 (339)
Q Consensus 278 gI~~-~~--------------~aH~Al~DA~~ta~L~~~l~~~ 305 (339)
|++. +. +-+-|..||+++..||.+|.++
T Consensus 164 g~~lK~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~~ 206 (206)
T 1vk0_A 164 WSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE 206 (206)
T ss_dssp CCCCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7766 21 2345889999999999998753
No 43
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=94.73 E-value=0.031 Score=59.20 Aligned_cols=92 Identities=18% Similarity=0.050 Sum_probs=65.5
Q ss_pred HHHHHHHHhcCCCCCceEEEEECCcchhHHHHHHHHHhcCCCCCCCCceeeHHHHHHHHHhcCCCCCCCCCCHHHHHHHh
Q 019538 198 PILLHYVKSRQKPGGYILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLARELMKSGGSNLPSKVSLQALREYY 277 (339)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iDtl~lar~l~~~~~~~l~~~~~L~~L~~~~ 277 (339)
..|..|+.+. .+ |+ +||+.+|. ++|+... .++||+.+++.+.|. +++|++|++.|
T Consensus 340 ~~Lk~lLed~------~i----n~-K~d~~~L~----~~Gi~~~---~~~Dt~laayLl~p~-------~~~l~~l~~~~ 394 (832)
T 1bgx_T 340 KALRDLKEAR------GL----LA-KDLSVLAL----REGLGLP---PGDDPMLLAYLLDPS-------NTTPEGVARRY 394 (832)
T ss_dssp HHHHHCSSBC------BT----TH-HHHHHHHH----HHTCCCC---BCCCHHHHHHHHCTT-------CCSTTHHHHHH
T ss_pred HHHHHHHhCC------CC----Ch-HHHHHHHH----HcCCccC---cccCHHHHHHHcCCC-------CCCHHHHHHHh
Confidence 3466677641 22 88 89998885 4688764 478999999999874 56899999998
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhc--cCHHHHHHhc
Q 019538 278 GIPLVGSAHRAMADVNCLSLILQRLTFDLK--LSLCDLIERG 317 (339)
Q Consensus 278 gI~~~~~aH~Al~DA~~ta~L~~~l~~~l~--~tl~~L~~~s 317 (339)
|-... .. .| .||..+.+|+..+..++. ..+.+|+...
T Consensus 395 gk~~~-~~-ya-~da~~~~~l~~~l~~~L~~~~~~~~l~~~i 433 (832)
T 1bgx_T 395 GGEWT-EE-AG-ERAALSERLFANLWGRLEGEERLLWLYREV 433 (832)
T ss_dssp SCCCC-SS-HH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCCch-HH-HH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 64211 11 23 699999999999998886 3455565443
No 44
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=40.06 E-value=3.4 Score=44.57 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=25.9
Q ss_pred eEEEEECCcchhHHHHHHHHHhcCCCCCCCCceeeHHHHH
Q 019538 214 ILFVAHNARSFDVPFLINEFSRCSYEVPNNWLFMDTLTLA 253 (339)
Q Consensus 214 ~~lV~hN~~~FD~~fL~~~~~r~gl~~p~~~~~iDtl~la 253 (339)
-++||||+ .||+..+.. .|.+.. ....++|||.+.
T Consensus 195 rlIVGHNV-syDRARI~E---eY~l~~-sk~rFlDTMSLH 229 (1172)
T 3ikm_A 195 QLVVGHNV-SFDRAHIRE---QYLIQG-SRMRFLDTMSMH 229 (1172)
T ss_dssp CCCBCBCS-SSSTTGGGT---SSCSSC-CCCCCCBTTHHH
T ss_pred cEEEeCCc-chhHHHHHH---HHhccc-CCceeeechhhh
Confidence 48999999 999988754 345543 344789999864
No 45
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=37.89 E-value=35 Score=33.65 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=31.3
Q ss_pred CcEEEEEEecCCCCCC---------C----------------CcEEEEEEEEEc-CCe-----eeeEEEEEcCC
Q 019538 127 VTAIVFDIETTGFSRE---------N----------------ERIIEIAFQDLL-GGE-----NSTFQTLVNPK 169 (339)
Q Consensus 127 ~~~vviDiETTGl~p~---------~----------------~~IIEIgav~v~-~g~-----i~~f~~lV~P~ 169 (339)
..||++|+|.+|+... . -.|||+|...++ +|. ...|+.++-|.
T Consensus 24 ~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~~~~Y~~~r~~v~~~~iiQlGlt~f~~~~~~~~~~~~~fNf~~fp~ 97 (507)
T 3d45_A 24 ADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK 97 (507)
T ss_dssp CSEEEEEEEESCSCC--------CBSCCHHHHHHHHHHHHTTBCEEEEEEEEEEECSSSSCEEEEEEEEEBCCC
T ss_pred CCEEEEeeeccCcCCCCCccccccccCCHHHHHHHHHHHHHhcccceEEEEEEecCCCCCceeEEeEEEEecCc
Confidence 6899999999998421 0 149999998776 221 26788888775
No 46
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=35.78 E-value=67 Score=30.94 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=31.0
Q ss_pred CcEEEEEEecCCCC--CC-------C----------------CcEEEEEEEEEc--CC----eeeeEEEEEcCC
Q 019538 127 VTAIVFDIETTGFS--RE-------N----------------ERIIEIAFQDLL--GG----ENSTFQTLVNPK 169 (339)
Q Consensus 127 ~~~vviDiETTGl~--p~-------~----------------~~IIEIgav~v~--~g----~i~~f~~lV~P~ 169 (339)
..||++|+|.+|+. |. . -.|||+|...++ +. ....|+.++-|.
T Consensus 22 ~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~~~~~~~~fNF~~FP~ 95 (430)
T 2a1r_A 22 ADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK 95 (430)
T ss_dssp CSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTTEEEEEEEEEEBCCC
T ss_pred CCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCCCceeEEEEEEEeccc
Confidence 58999999999994 21 0 149999998776 22 127788888763
No 47
>1clv_I Protein (alpha-amylase inhibitor); insect alpha-amylase inhibitor, amaranthus hypochondriacus, yellow MEAL WORM, knottin, hydrolase; 2.00A {Tenebrio molitor} SCOP: g.3.2.1 PDB: 1htx_A 1qfd_A
Probab=23.89 E-value=9.5 Score=22.22 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=14.6
Q ss_pred hHhhhhhhhhhhhcCCCC
Q 019538 23 NFCRESFHSFSRRYGHSP 40 (339)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ 40 (339)
--|||.+-+-+.-|||+|
T Consensus 15 vpccepytctsdyygncs 32 (32)
T 1clv_I 15 VPCCEPYTCTSDYYGNCS 32 (32)
T ss_dssp CCBCTTCCBSCSSSEEBC
T ss_pred ccccCceeccccccccCC
Confidence 348899999898899875
Done!