BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019539
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide
Ekpaavvapittg From Sip
Length = 193
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 5/193 (2%)
Query: 127 VAESLELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAHLR 186
VA S+ PCKY GC P+ K HE +C FRPY+CP G+ C G + ++ HL
Sbjct: 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60
Query: 187 DDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQ-LGTAPVYMA 245
HK + T + ++ ++ W++ + CFG +F L E + + A
Sbjct: 61 HQHK-SITTLQGEDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFA 118
Query: 246 FLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFF 305
++ +G +A +++Y LE+ G+ R+L+WE TPRSI + + D L+ ++A F
Sbjct: 119 IVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLF 178
Query: 306 SGGDRKELKLRVT 318
+ + L + VT
Sbjct: 179 A--ENGNLGINVT 189
>pdb|2AN6|A Chain A, Protein-Peptide Complex
pdb|2AN6|B Chain B, Protein-Peptide Complex
pdb|2AN6|C Chain C, Protein-Peptide Complex
pdb|2AN6|D Chain D, Protein-Peptide Complex
Length = 191
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 5/190 (2%)
Query: 130 SLELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAHLRDDH 189
S+ PCKY GC P+ K +HE +C FRPY+CP G+ C G + ++ HL H
Sbjct: 2 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 61
Query: 190 KVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQ-LGTAPVYMAFLR 248
K + T + ++ ++ W++ + CFG +F L E + + A ++
Sbjct: 62 K-SITTLQGEDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQ 119
Query: 249 FMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGG 308
+G +A +++Y LE+ G+ R+L+WE TPRSI + + D L+ ++A F+
Sbjct: 120 LIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFA-- 177
Query: 309 DRKELKLRVT 318
+ L + VT
Sbjct: 178 ENGNLGINVT 187
>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog
pdb|1K2F|B Chain B, Siah, Seven In Absentia Homolog
Length = 190
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 5/190 (2%)
Query: 130 SLELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAHLRDDH 189
S+ PCKY GC P+ K +HE +C FRPY+CP G+ C G + ++ HL H
Sbjct: 1 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60
Query: 190 KVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQ-LGTAPVYMAFLR 248
K + T + ++ ++ W++ + CFG +F L E + + A ++
Sbjct: 61 K-SITTLQGEDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQ 118
Query: 249 FMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGG 308
+G +A +++Y LE+ G+ R+L+WE TPRSI + + D L+ ++A F+
Sbjct: 119 LIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFA-- 176
Query: 309 DRKELKLRVT 318
+ L + VT
Sbjct: 177 ENGNLGINVT 186
>pdb|1XR4|A Chain A, X-ray Crystal Structure Of Putative Citrate Lyase Alpha
Chain/citrate- Acp Transferase [salmonella Typhimurium]
pdb|1XR4|B Chain B, X-ray Crystal Structure Of Putative Citrate Lyase Alpha
Chain/citrate- Acp Transferase [salmonella Typhimurium]
Length = 509
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 204 VKSNPREVENATWMLTVFHCFGQYFCLHFEAYQLGTAPVYMAFLRFMGDETEARSYSYSL 263
+ SNPRE+ A V G YFC F + Q GT +A RF+ D+ + + S
Sbjct: 244 LSSNPRELLIARQAANVIEHSG-YFCDGF-SLQTGTGGASLAVTRFLEDKXRRHNITASF 301
Query: 264 EVGG 267
+GG
Sbjct: 302 GLGG 305
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 70 SVHELLECPVCTNSMYPPIH-QCHNGHTLCSTCKTRVHN------RCPTCRQEL 116
++ ++LECP+C + P+ +C H C C ++ N +CP C+ ++
Sbjct: 17 AMQKILECPICLELIKEPVSTKCD--HIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 70 SVHELLECPVCTNSMYPPIHQCHNGHTLCSTC---KTRVHNR-CPTCRQELGDIRCL 122
S+H L CP+C + + + H C+ C R N+ CPTCR++L R L
Sbjct: 30 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSL 86
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 70 SVHELLECPVCTNSMYPPIHQCHNGHTLCSTC---KTRVHNR-CPTCRQELGDIRCL 122
S+H L CP+C + + + H C+ C R N+ CPTCR++L R L
Sbjct: 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSL 106
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 13/56 (23%)
Query: 70 SVHELLECPVCTNS-----MYPPIHQCHNGHTLCSTCKTRVHN------RCPTCRQ 114
++ E+LECP+C S + P + C GHT+C C ++ RCP C +
Sbjct: 11 ALREVLECPICMESFTEEQLRPKLLHC--GHTICRQCLEKLLASSINGVRCPFCSK 64
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 70 SVHELLECPVCTNSMYPPIHQCHNGHTLCSTC---KTRVHNR-CPTCRQELGDIRCL 122
S+H L CP+C + + + H C+ C R N+ CPTCR++L R L
Sbjct: 49 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSL 105
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 125 EKVAESLELPCKYYHLGCPEIF--PYYSKLKHEVMCTFRPYNCPYAGS 170
E + E L KY HL C ++F P+ ++ +C PY CP G+
Sbjct: 8 EDLVEKKCLAKKYTHLSCDKVFCQPWQRCIEGTCVCKL-PYQCPKNGT 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,825,976
Number of Sequences: 62578
Number of extensions: 390647
Number of successful extensions: 765
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 23
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)