Query 019539
Match_columns 339
No_of_seqs 311 out of 1445
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 03:21:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a25_A Ubiquitin ligase SIAH1; 100.0 1.5E-43 5E-48 318.9 13.8 190 127-321 1-192 (193)
2 3hcs_A TNF receptor-associated 99.8 6.1E-21 2.1E-25 167.0 6.5 119 68-193 12-137 (170)
3 3hct_A TNF receptor-associated 99.6 2.8E-16 9.5E-21 129.7 4.2 92 67-162 11-110 (118)
4 3knv_A TNF receptor-associated 99.6 2.1E-16 7.1E-21 135.0 0.3 95 61-159 18-130 (141)
5 1rmd_A RAG1; V(D)J recombinati 99.6 5.6E-16 1.9E-20 127.2 1.8 89 69-161 18-115 (116)
6 3ztg_A E3 ubiquitin-protein li 99.0 1.2E-10 4E-15 91.2 2.9 68 68-137 7-85 (92)
7 1t1h_A Gspef-atpub14, armadill 99.0 1.1E-10 3.7E-15 88.6 1.0 62 69-132 3-72 (78)
8 2egp_A Tripartite motif-contai 98.9 1.2E-10 4.1E-15 88.3 0.3 50 67-118 5-65 (79)
9 2y43_A E3 ubiquitin-protein li 98.9 1.3E-10 4.3E-15 92.4 0.3 71 61-133 9-87 (99)
10 2ysl_A Tripartite motif-contai 98.9 5.7E-10 1.9E-14 83.3 3.6 51 66-118 12-69 (73)
11 1jm7_B BARD1, BRCA1-associated 98.9 1.7E-10 5.9E-15 94.6 0.5 67 64-132 12-84 (117)
12 2ecv_A Tripartite motif-contai 98.9 2.6E-10 9E-15 87.1 0.7 50 67-118 12-71 (85)
13 1wgm_A Ubiquitin conjugation f 98.9 1.2E-09 4.1E-14 87.4 4.2 64 68-133 16-87 (98)
14 2kr4_A Ubiquitin conjugation f 98.8 1.1E-09 3.8E-14 85.2 3.3 63 68-132 8-77 (85)
15 2csy_A Zinc finger protein 183 98.8 1.5E-09 5.2E-14 83.0 3.8 59 69-129 10-74 (81)
16 2ecw_A Tripartite motif-contai 98.8 2.7E-10 9.4E-15 87.0 -0.7 58 67-126 12-82 (85)
17 2kre_A Ubiquitin conjugation f 98.8 1.3E-09 4.3E-14 87.6 2.7 64 68-133 23-93 (100)
18 3lrq_A E3 ubiquitin-protein li 98.8 2E-10 6.9E-15 91.8 -2.4 63 65-129 13-84 (100)
19 3fl2_A E3 ubiquitin-protein li 98.8 5.3E-10 1.8E-14 92.4 -1.3 64 67-132 45-117 (124)
20 1bor_A Transcription factor PM 98.8 3.6E-09 1.2E-13 75.7 3.2 46 71-118 3-49 (56)
21 2djb_A Polycomb group ring fin 98.8 3E-09 1E-13 79.6 2.9 50 67-118 8-62 (72)
22 2ysj_A Tripartite motif-contai 98.7 2.8E-09 9.5E-14 77.5 2.1 45 66-112 12-63 (63)
23 2yur_A Retinoblastoma-binding 98.7 4.4E-09 1.5E-13 79.2 2.7 49 67-117 8-63 (74)
24 2ckl_A Polycomb group ring fin 98.7 2.4E-09 8.3E-14 86.3 1.3 63 68-132 9-83 (108)
25 4ayc_A E3 ubiquitin-protein li 98.7 2.2E-09 7.5E-14 90.5 1.0 58 70-129 49-111 (138)
26 2ckl_B Ubiquitin ligase protei 98.7 3.5E-09 1.2E-13 91.7 2.3 69 63-133 43-121 (165)
27 2ecy_A TNF receptor-associated 98.7 6E-09 2E-13 76.5 2.9 49 68-118 9-62 (66)
28 1z6u_A NP95-like ring finger p 98.7 2.4E-09 8.3E-14 91.9 0.3 62 69-132 73-143 (150)
29 2d8t_A Dactylidin, ring finger 98.7 1.1E-08 3.9E-13 76.2 3.4 46 70-117 11-60 (71)
30 1e4u_A Transcriptional repress 98.6 8.7E-09 3E-13 79.1 2.6 51 68-118 5-62 (78)
31 3l11_A E3 ubiquitin-protein li 98.6 8.8E-09 3E-13 83.8 2.6 47 69-117 10-61 (115)
32 2ea6_A Ring finger protein 4; 98.6 7.5E-09 2.6E-13 76.0 1.7 49 67-117 8-67 (69)
33 2yu4_A E3 SUMO-protein ligase 98.6 8.3E-09 2.8E-13 81.6 1.9 62 70-133 3-81 (94)
34 2c2l_A CHIP, carboxy terminus 98.6 1.8E-08 6.3E-13 92.9 3.1 63 69-133 203-273 (281)
35 2ct2_A Tripartite motif protei 98.6 2.5E-08 8.6E-13 76.7 2.9 50 67-118 8-68 (88)
36 1jm7_A BRCA1, breast cancer ty 98.5 2.1E-09 7E-14 86.7 -3.6 48 69-118 16-70 (112)
37 2ecj_A Tripartite motif-contai 98.5 3E-08 1E-12 70.4 2.6 44 67-112 8-58 (58)
38 2ecg_A Baculoviral IAP repeat- 98.5 2.1E-08 7.2E-13 75.8 0.6 48 68-118 19-68 (75)
39 3ng2_A RNF4, snurf, ring finge 98.5 2.4E-08 8.2E-13 73.8 0.4 47 70-118 6-63 (71)
40 2f42_A STIP1 homology and U-bo 98.4 5.3E-08 1.8E-12 86.1 2.4 63 69-133 101-171 (179)
41 2ect_A Ring finger protein 126 98.4 1.9E-07 6.6E-12 70.4 4.1 48 69-118 10-64 (78)
42 4ic3_A E3 ubiquitin-protein li 98.4 3E-08 1E-12 74.9 -0.6 47 69-118 19-67 (74)
43 2ecn_A Ring finger protein 141 98.4 7.7E-08 2.6E-12 71.2 1.6 48 69-118 10-60 (70)
44 2ep4_A Ring finger protein 24; 98.4 1.7E-07 5.8E-12 70.0 3.3 48 69-118 10-64 (74)
45 1g25_A CDK-activating kinase a 98.4 4.1E-08 1.4E-12 71.7 -0.1 44 73-118 2-55 (65)
46 2xeu_A Ring finger protein 4; 98.3 6.6E-08 2.3E-12 69.8 0.1 44 73-118 2-56 (64)
47 1x4j_A Ring finger protein 38; 98.3 4.7E-07 1.6E-11 67.9 4.3 47 70-118 19-72 (75)
48 1iym_A EL5; ring-H2 finger, ub 98.3 2.6E-07 8.8E-12 64.9 2.7 45 71-117 2-54 (55)
49 3htk_C E3 SUMO-protein ligase 98.2 2.5E-07 8.6E-12 86.1 1.9 62 69-132 176-249 (267)
50 2ecm_A Ring finger and CHY zin 98.2 3.1E-07 1.1E-11 64.4 1.8 43 73-117 4-54 (55)
51 1chc_A Equine herpes virus-1 r 98.2 3.4E-07 1.2E-11 67.1 2.1 44 73-118 4-52 (68)
52 2kiz_A E3 ubiquitin-protein li 98.2 5E-07 1.7E-11 66.5 2.6 48 69-118 9-63 (69)
53 2ea5_A Cell growth regulator w 98.2 7.4E-07 2.5E-11 66.3 3.3 45 71-118 12-58 (68)
54 2l0b_A E3 ubiquitin-protein li 98.1 8.8E-07 3E-11 69.2 2.5 45 71-117 37-88 (91)
55 4ap4_A E3 ubiquitin ligase RNF 98.1 4.3E-07 1.5E-11 74.5 0.2 45 72-118 5-60 (133)
56 2yho_A E3 ubiquitin-protein li 98.1 3.6E-07 1.2E-11 69.9 -0.5 46 70-118 14-61 (79)
57 1v87_A Deltex protein 2; ring- 98.0 1.5E-06 5.2E-11 70.2 1.4 43 74-118 25-94 (114)
58 3t6p_A Baculoviral IAP repeat- 97.9 2.8E-06 9.5E-11 82.3 1.4 46 70-118 291-338 (345)
59 2vje_A E3 ubiquitin-protein li 97.8 4.7E-06 1.6E-10 61.0 0.8 45 72-118 6-57 (64)
60 2ecl_A Ring-box protein 2; RNF 97.8 1.2E-05 4E-10 61.5 3.1 43 73-117 14-75 (81)
61 2y1n_A E3 ubiquitin-protein li 97.7 7.6E-06 2.6E-10 80.2 1.7 45 72-118 330-379 (389)
62 4ap4_A E3 ubiquitin ligase RNF 97.7 5.8E-06 2E-10 67.7 0.3 46 71-118 69-125 (133)
63 2vje_B MDM4 protein; proto-onc 97.7 5.5E-06 1.9E-10 60.5 0.1 44 73-118 6-56 (63)
64 1wim_A KIAA0161 protein; ring 97.6 9.5E-06 3.3E-10 63.5 0.4 41 73-115 4-61 (94)
65 2yre_A F-box only protein 30; 97.4 7.8E-05 2.7E-09 59.5 2.9 45 142-186 44-88 (100)
66 2yuc_A TNF receptor-associated 97.4 9.6E-05 3.3E-09 55.4 3.1 53 131-191 15-68 (76)
67 2yre_A F-box only protein 30; 97.2 0.0001 3.5E-09 58.7 2.0 57 108-166 39-98 (100)
68 2bay_A PRE-mRNA splicing facto 97.2 6.5E-05 2.2E-09 54.6 0.7 45 74-118 3-50 (61)
69 3dpl_R Ring-box protein 1; ubi 97.1 0.00015 5.2E-09 58.4 1.5 44 73-118 36-101 (106)
70 4a0k_B E3 ubiquitin-protein li 96.8 0.00019 6.3E-09 59.1 0.0 42 74-117 48-111 (117)
71 3hcs_A TNF receptor-associated 96.7 0.00065 2.2E-08 58.5 2.4 49 131-187 109-158 (170)
72 3vk6_A E3 ubiquitin-protein li 96.6 0.00046 1.6E-08 54.9 0.9 78 76-191 3-87 (101)
73 2d9k_A FLN29 gene product; zin 96.1 0.00063 2.2E-08 50.7 -0.9 49 131-187 16-64 (75)
74 2yuc_A TNF receptor-associated 95.3 0.0026 9E-08 47.3 -0.2 43 148-193 2-44 (76)
75 2d8s_A Cellular modulator of i 95.2 0.013 4.5E-07 44.5 3.3 46 72-117 13-69 (80)
76 2ct0_A Non-SMC element 1 homol 94.2 0.028 9.7E-07 42.2 2.9 45 72-117 13-63 (74)
77 3k1l_B Fancl; UBC, ring, RWD, 93.7 0.017 5.8E-07 55.7 1.2 47 71-117 305-372 (381)
78 2cs3_A Protein C14ORF4, MY039 92.7 0.27 9.2E-06 37.5 6.1 32 72-103 13-47 (93)
79 2yt9_A Zinc finger-containing 91.2 0.28 9.6E-06 36.4 4.9 52 132-191 35-91 (95)
80 3hct_A TNF receptor-associated 90.9 0.13 4.5E-06 41.2 2.9 63 124-192 45-110 (118)
81 2eod_A TNF receptor-associated 89.6 0.17 5.7E-06 35.5 2.2 51 132-190 10-62 (66)
82 1rmd_A RAG1; V(D)J recombinati 89.5 0.36 1.2E-05 38.3 4.4 75 107-187 24-111 (116)
83 1wjp_A Zinc finger protein 295 88.9 0.69 2.4E-05 35.2 5.5 46 142-191 48-95 (107)
84 2jun_A Midline-1; B-BOX, TRIM, 88.3 0.12 4E-06 40.2 0.7 32 73-104 2-35 (101)
85 2d9k_A FLN29 gene product; zin 87.1 0.19 6.5E-06 36.9 1.2 33 149-185 3-36 (75)
86 2dlq_A GLI-kruppel family memb 86.0 1.3 4.4E-05 34.1 5.6 106 73-191 6-120 (124)
87 2ee8_A Protein ODD-skipped-rel 84.1 2.7 9.2E-05 31.5 6.5 27 161-191 72-99 (106)
88 2dmd_A Zinc finger protein 64, 83.3 0.94 3.2E-05 33.4 3.5 46 142-191 42-90 (96)
89 2dlq_A GLI-kruppel family memb 82.8 2.7 9.1E-05 32.2 6.2 77 107-191 8-92 (124)
90 3knv_A TNF receptor-associated 80.9 0.52 1.8E-05 39.2 1.3 27 160-188 102-129 (141)
91 2kmk_A Zinc finger protein GFI 80.4 2.2 7.6E-05 30.1 4.6 73 108-188 3-80 (82)
92 2jne_A Hypothetical protein YF 76.6 0.71 2.4E-05 36.3 0.8 38 75-117 33-72 (101)
93 2j7j_A Transcription factor II 76.1 3.4 0.00012 29.2 4.5 77 108-189 3-85 (85)
94 2cup_A Skeletal muscle LIM-pro 76.0 1.3 4.6E-05 33.8 2.3 46 72-117 31-77 (101)
95 2dmi_A Teashirt homolog 3; zin 75.1 3.7 0.00013 31.3 4.7 38 150-191 67-106 (115)
96 2gli_A Protein (five-finger GL 73.8 7.9 0.00027 30.8 6.6 13 74-86 3-15 (155)
97 1vyx_A ORF K3, K3RING; zinc-bi 72.9 1.6 5.5E-05 30.9 1.9 46 72-117 4-58 (60)
98 2lt7_A Transcriptional regulat 69.9 3.7 0.00013 33.2 3.7 77 108-192 24-105 (133)
99 2csh_A Zinc finger protein 297 69.4 5.4 0.00019 30.0 4.4 53 131-191 36-91 (110)
100 2drp_A Protein (tramtrack DNA- 68.5 4.6 0.00016 27.4 3.5 45 142-190 16-65 (66)
101 2ctd_A Zinc finger protein 512 68.3 4.9 0.00017 30.4 3.9 57 127-191 29-88 (96)
102 1llm_C Chimera of ZIF23-GCN4; 68.1 0.4 1.4E-05 35.3 -2.4 76 108-191 5-84 (88)
103 2ct1_A Transcriptional repress 67.4 6.1 0.00021 27.8 4.1 47 142-192 21-72 (77)
104 1a1h_A QGSR zinc finger peptid 67.0 7.7 0.00026 27.8 4.6 74 108-189 6-86 (90)
105 2rpc_A Zinc finger protein ZIC 66.0 9 0.00031 30.6 5.3 115 70-191 21-148 (155)
106 2eod_A TNF receptor-associated 64.9 2.6 8.9E-05 29.1 1.5 32 155-191 3-34 (66)
107 2xqn_T Testin, TESS; metal-bin 63.9 2.6 9E-05 33.5 1.6 46 72-117 28-74 (126)
108 3llq_A Aquaporin Z 2; aquapori 63.6 1.5 5E-05 40.4 0.0 11 17-27 5-15 (256)
109 2adr_A ADR1; transcription reg 63.5 12 0.00042 24.6 4.8 47 142-192 8-57 (60)
110 3m62_A Ubiquitin conjugation f 62.8 3.9 0.00013 44.2 3.1 64 69-133 886-956 (968)
111 2i13_A AART; DNA binding, zinc 61.2 8.1 0.00028 32.2 4.3 76 108-191 79-159 (190)
112 2ko5_A Ring finger protein Z; 60.7 3.9 0.00013 32.0 1.9 51 66-118 20-73 (99)
113 2jrp_A Putative cytoplasmic pr 59.6 3.4 0.00012 31.4 1.4 38 75-117 3-42 (81)
114 3uk3_C Zinc finger protein 217 59.3 6.3 0.00022 25.7 2.7 45 142-190 10-57 (57)
115 1x4u_A Zinc finger, FYVE domai 58.7 8.7 0.0003 28.8 3.6 35 70-104 10-47 (84)
116 2d9h_A Zinc finger protein 692 57.1 7.2 0.00025 27.4 2.8 29 160-192 36-65 (78)
117 1z60_A TFIIH basal transcripti 57.0 5.6 0.00019 28.3 2.1 37 76-112 17-58 (59)
118 1ubd_C Protein (YY1 zinc finge 57.0 5.6 0.00019 30.5 2.4 108 73-190 4-119 (124)
119 2ebt_A Krueppel-like factor 5; 55.9 21 0.0007 25.9 5.4 44 141-188 52-98 (100)
120 2i13_A AART; DNA binding, zinc 54.6 13 0.00043 30.9 4.4 75 108-190 51-130 (190)
121 1iml_A CRIP, cysteine rich int 54.5 6.6 0.00022 28.2 2.2 45 72-116 25-71 (76)
122 1x61_A Thyroid receptor intera 52.9 3.7 0.00013 29.2 0.6 39 73-111 32-70 (72)
123 2ct7_A Ring finger protein 31; 52.8 11 0.00036 28.4 3.2 32 74-105 25-61 (86)
124 1bbo_A Human enhancer-binding 51.4 23 0.00078 22.8 4.5 45 142-190 7-54 (57)
125 2rpc_A Zinc finger protein ZIC 50.8 34 0.0011 27.1 6.3 79 107-191 26-118 (155)
126 2gli_A Protein (five-finger GL 50.6 27 0.00091 27.6 5.6 26 161-188 66-92 (155)
127 1x5w_A Zinc finger protein 64, 50.4 12 0.00042 25.6 3.1 46 142-191 15-63 (70)
128 2jmo_A Parkin; IBR, E3 ligase, 50.4 12 0.00041 27.8 3.2 39 74-114 25-75 (80)
129 1x68_A FHL5 protein; four-and- 49.4 13 0.00044 26.7 3.1 39 73-111 34-73 (76)
130 2gqj_A Zinc finger protein KIA 49.2 6.2 0.00021 29.5 1.4 55 130-192 22-81 (98)
131 3nw0_A Non-structural maintena 48.7 8.4 0.00029 34.8 2.4 44 73-117 179-228 (238)
132 1wfh_A Zinc finger (AN1-like) 48.2 28 0.00095 25.1 4.6 40 73-112 14-53 (64)
133 1tf6_A Protein (transcription 48.2 35 0.0012 28.1 6.2 112 71-191 9-132 (190)
134 2lv2_A Insulinoma-associated p 48.0 19 0.00065 26.8 4.0 46 142-191 34-82 (85)
135 2kn9_A Rubredoxin; metalloprot 47.4 27 0.00091 26.4 4.6 39 72-115 25-69 (81)
136 2jr6_A UPF0434 protein NMA0874 46.9 9.5 0.00032 27.8 2.0 33 68-103 2-34 (68)
137 2jp9_A Wilms tumor 1; DNA bind 46.4 33 0.0011 25.5 5.3 49 132-186 66-117 (119)
138 2jtn_A LIM domain-binding prot 45.7 8 0.00027 32.9 1.7 12 75-86 61-72 (182)
139 1x3c_A Zinc finger protein 292 45.7 15 0.00051 27.3 2.9 29 161-191 26-55 (73)
140 1weo_A Cellulose synthase, cat 45.1 21 0.00073 27.5 3.8 44 74-117 16-69 (93)
141 1wfp_A Zinc finger (AN1-like) 44.9 69 0.0024 23.7 6.4 42 73-114 24-65 (74)
142 3llq_A Aquaporin Z 2; aquapori 44.4 4.7 0.00016 37.0 0.0 18 16-33 1-18 (256)
143 1dl6_A Transcription factor II 44.1 18 0.00062 25.3 3.1 36 67-104 4-39 (58)
144 2xjy_A Rhombotin-2; oncoprotei 43.8 7 0.00024 31.1 1.0 46 72-117 27-77 (131)
145 2jny_A Uncharacterized BCR; st 43.2 13 0.00046 27.0 2.3 34 67-103 3-36 (67)
146 2jp9_A Wilms tumor 1; DNA bind 42.9 27 0.00094 26.1 4.3 79 107-191 7-92 (119)
147 2js4_A UPF0434 protein BB2007; 42.0 9.6 0.00033 27.9 1.4 33 68-103 2-34 (70)
148 1z2q_A LM5-1; membrane protein 41.9 17 0.0006 27.1 2.9 35 70-104 17-54 (84)
149 1tf6_A Protein (transcription 41.5 30 0.001 28.5 4.7 15 73-87 41-57 (190)
150 2wbs_A Krueppel-like factor 4; 41.1 19 0.00065 25.5 3.0 43 141-187 42-87 (89)
151 2eln_A Zinc finger protein 406 41.1 21 0.00072 22.3 2.8 25 161-187 8-33 (38)
152 2hf1_A Tetraacyldisaccharide-1 41.1 8.9 0.0003 28.0 1.1 33 68-103 2-34 (68)
153 2cot_A Zinc finger protein 435 40.9 44 0.0015 23.0 4.9 36 151-190 34-71 (77)
154 2wbt_A B-129; zinc finger; 2.7 40.7 32 0.0011 26.4 4.5 55 128-191 70-126 (129)
155 1m3v_A FLIN4, fusion of the LI 40.1 8.5 0.00029 30.6 0.9 46 73-118 31-81 (122)
156 2yw8_A RUN and FYVE domain-con 39.9 20 0.00067 26.7 2.9 34 71-104 16-52 (82)
157 2kpi_A Uncharacterized protein 39.8 12 0.0004 26.2 1.5 31 67-102 3-35 (56)
158 2rgt_A Fusion of LIM/homeobox 39.7 12 0.0004 31.4 1.8 45 72-117 31-76 (169)
159 1joc_A EEA1, early endosomal a 39.4 15 0.00051 29.7 2.3 33 72-104 67-102 (125)
160 3i2d_A E3 SUMO-protein ligase 39.1 13 0.00043 36.0 2.1 57 73-131 248-316 (371)
161 1x6e_A Zinc finger protein 24; 38.6 25 0.00086 24.1 3.2 45 142-190 20-67 (72)
162 2pk7_A Uncharacterized protein 38.5 10 0.00035 27.8 1.0 33 68-103 2-34 (69)
163 1rut_X Flinc4, fusion protein 38.1 5.7 0.0002 34.1 -0.5 46 72-117 30-80 (188)
164 1x6h_A Transcriptional repress 37.4 37 0.0013 23.6 4.1 29 161-193 46-75 (86)
165 2dlk_A Novel protein; ZF-C2H2 37.1 35 0.0012 23.5 3.8 48 141-190 14-65 (79)
166 1wg2_A Zinc finger (AN1-like) 34.3 66 0.0023 23.1 4.8 41 74-114 15-55 (64)
167 2epa_A Krueppel-like factor 10 34.1 43 0.0015 22.7 3.8 51 132-186 17-70 (72)
168 1wfl_A Zinc finger protein 216 34.0 71 0.0024 23.6 5.0 40 74-113 25-64 (74)
169 1vfy_A Phosphatidylinositol-3- 33.7 23 0.00079 25.7 2.4 29 76-104 13-44 (73)
170 1x4l_A Skeletal muscle LIM-pro 33.7 15 0.0005 26.0 1.2 33 73-105 34-66 (72)
171 2d8z_A Four and A half LIM dom 33.6 14 0.00049 25.8 1.2 33 73-105 30-62 (70)
172 2lce_A B-cell lymphoma 6 prote 33.2 64 0.0022 22.0 4.7 45 142-190 23-70 (74)
173 1zw8_A Zinc-responsive transcr 33.0 26 0.00089 24.6 2.5 53 133-189 2-64 (64)
174 2j9u_B VPS36, vacuolar protein 32.7 18 0.00063 26.9 1.6 11 73-83 16-26 (76)
175 4fo9_A E3 SUMO-protein ligase 31.8 19 0.00066 34.5 2.1 56 73-130 214-281 (360)
176 1wfk_A Zinc finger, FYVE domai 31.0 34 0.0012 25.8 3.0 32 73-104 8-42 (88)
177 3t7l_A Zinc finger FYVE domain 31.0 26 0.00089 26.5 2.3 33 72-104 18-53 (90)
178 1sp2_A SP1F2; zinc finger, tra 30.7 54 0.0018 17.9 3.3 25 161-187 1-26 (31)
179 2k5r_A Uncharacterized protein 30.4 22 0.00074 27.8 1.8 18 68-85 2-19 (97)
180 1ubd_C Protein (YY1 zinc finge 30.0 58 0.002 24.5 4.3 79 107-191 6-90 (124)
181 2fiy_A Protein FDHE homolog; F 29.9 21 0.00072 33.5 1.9 44 72-115 180-231 (309)
182 1a7i_A QCRP2 (LIM1); LIM domai 29.5 14 0.00049 26.7 0.6 42 72-113 32-74 (81)
183 1ard_A Yeast transcription fac 29.1 51 0.0017 17.3 2.9 24 161-188 1-25 (29)
184 1y02_A CARP2, FYVE-ring finger 29.0 28 0.00096 28.1 2.3 42 73-114 18-65 (120)
185 2ehe_A Four and A half LIM dom 28.9 28 0.00096 25.1 2.2 34 72-105 41-74 (82)
186 1wen_A Inhibitor of growth fam 28.6 75 0.0026 22.9 4.4 46 70-116 12-66 (71)
187 1klr_A Zinc finger Y-chromosom 28.3 41 0.0014 17.8 2.4 25 162-190 2-27 (30)
188 1paa_A Yeast transcription fac 28.2 51 0.0017 17.6 2.8 26 161-190 1-27 (30)
189 2cu8_A Cysteine-rich protein 2 28.1 22 0.00075 25.3 1.4 32 73-104 35-67 (76)
190 2cur_A Skeletal muscle LIM-pro 27.7 20 0.0007 24.9 1.1 33 73-105 30-62 (69)
191 1nyp_A Pinch protein; LIM doma 27.6 15 0.00052 25.4 0.4 32 73-104 30-61 (66)
192 1p7a_A BF3, BKLF, kruppel-like 27.6 62 0.0021 18.4 3.3 24 161-188 10-34 (37)
193 3tla_A MCCF; serine protease, 27.6 13 0.00044 35.8 0.0 17 134-150 114-130 (371)
194 1b8t_A Protein (CRP1); LIM dom 27.5 24 0.00082 30.1 1.8 37 74-116 115-152 (192)
195 2cr8_A MDM4 protein; ZF-ranbp 27.1 40 0.0014 23.2 2.4 29 69-104 6-34 (53)
196 2egq_A FHL1 protein; LIM domai 26.9 16 0.00054 26.1 0.4 30 74-103 46-75 (77)
197 1dvp_A HRS, hepatocyte growth 26.8 30 0.001 30.3 2.3 31 74-104 161-194 (220)
198 2kvf_A Zinc finger and BTB dom 26.8 45 0.0016 17.6 2.4 23 161-187 2-25 (28)
199 1x4k_A Skeletal muscle LIM-pro 26.7 19 0.00066 25.2 0.8 33 73-105 32-64 (72)
200 2dar_A PDZ and LIM domain prot 26.6 24 0.00081 26.1 1.4 31 74-104 51-81 (90)
201 1wyh_A SLIM 2, skeletal muscle 26.5 21 0.00071 25.0 1.0 33 73-105 32-64 (72)
202 3uau_A JLPA, surface-exposed l 26.3 14 0.00048 34.3 0.0 16 176-191 117-132 (379)
203 2iyb_E Testin, TESS, TES; LIM 26.1 20 0.00069 24.8 0.8 32 73-104 31-63 (65)
204 2elx_A Zinc finger protein 406 25.5 53 0.0018 18.3 2.6 25 161-189 6-31 (35)
205 1wff_A Riken cDNA 2810002D23 p 25.5 1.1E+02 0.0039 23.1 5.0 39 74-112 25-64 (85)
206 2d8x_A Protein pinch; LIM doma 25.0 20 0.00067 25.1 0.6 32 73-104 30-61 (70)
207 2yjp_A Putative ABC transporte 24.8 15 0.00053 32.5 0.0 8 293-300 207-214 (291)
208 1wig_A KIAA1808 protein; LIM d 24.8 24 0.00081 25.2 1.0 34 72-105 29-63 (73)
209 2kvh_A Zinc finger and BTB dom 24.5 52 0.0018 17.2 2.3 23 161-187 2-25 (27)
210 1rik_A E6APC1 peptide; E6-bind 24.4 46 0.0016 17.6 2.1 23 161-187 1-24 (29)
211 2vy4_A U11/U12 small nuclear r 24.3 27 0.00092 22.2 1.1 25 132-159 5-29 (37)
212 2m0e_A Zinc finger and BTB dom 24.0 41 0.0014 17.6 1.8 24 161-188 1-25 (29)
213 3lqh_A Histone-lysine N-methyl 23.2 1E+02 0.0035 26.5 5.0 43 76-118 4-66 (183)
214 1b8t_A Protein (CRP1); LIM dom 23.0 28 0.00096 29.6 1.3 43 72-114 32-75 (192)
215 1srk_A Zinc finger protein ZFP 22.8 67 0.0023 18.0 2.7 25 161-189 6-31 (35)
216 1znf_A 31ST zinc finger from X 22.6 72 0.0025 16.4 2.7 22 162-187 1-23 (27)
217 2m0d_A Zinc finger and BTB dom 22.6 71 0.0024 16.7 2.7 24 161-188 2-26 (30)
218 2yln_A Putative ABC transporte 22.5 18 0.00062 31.9 0.0 9 293-301 205-213 (283)
219 2lv9_A Histone-lysine N-methyl 22.4 98 0.0033 23.6 4.3 42 72-114 26-75 (98)
220 2cor_A Pinch protein; LIM doma 21.8 35 0.0012 24.6 1.5 32 73-105 40-71 (79)
221 2elq_A Zinc finger protein 406 21.8 67 0.0023 18.2 2.6 23 161-187 8-31 (36)
222 2elt_A Zinc finger protein 406 21.7 64 0.0022 18.2 2.5 24 161-188 8-32 (36)
223 3zyq_A Hepatocyte growth facto 21.1 45 0.0015 29.5 2.3 30 75-104 165-197 (226)
224 2co8_A NEDD9 interacting prote 20.8 52 0.0018 23.8 2.3 33 73-105 41-75 (82)
225 2cuq_A Four and A half LIM dom 20.8 42 0.0014 23.9 1.7 24 94-117 2-26 (80)
226 2kvg_A Zinc finger and BTB dom 20.7 54 0.0018 17.4 1.8 23 161-187 2-25 (27)
227 2g9z_A Thiamine pyrophosphokin 20.7 23 0.00078 33.8 0.3 16 25-40 4-19 (348)
228 2dlo_A Thyroid receptor-intera 20.6 44 0.0015 23.9 1.8 25 93-117 2-26 (81)
229 3mjh_B Early endosome antigen 20.5 62 0.0021 20.3 2.2 25 163-191 6-31 (34)
230 2els_A Zinc finger protein 406 20.2 73 0.0025 18.0 2.5 24 161-188 8-32 (36)
231 1zfd_A SWI5; DNA binding motif 20.2 95 0.0033 16.8 3.0 25 161-187 2-27 (32)
232 1rim_A E6APC2 peptide; E6-bind 20.1 80 0.0027 17.7 2.6 24 161-188 1-25 (33)
233 2elo_A Zinc finger protein 406 20.1 61 0.0021 18.5 2.1 25 161-189 8-33 (37)
No 1
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=100.00 E-value=1.5e-43 Score=318.87 Aligned_cols=190 Identities=31% Similarity=0.628 Sum_probs=131.3
Q ss_pred HhhhccccCCCCCCCCCCccCcCcHHHHHhhCCCCCccCCCCCCCCccccChhHHHHHhhhcCCC-CcccceeEEEEEec
Q 019539 127 VAESLELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAHLRDDHKV-DMHTGCTFNHRYVK 205 (339)
Q Consensus 127 ~l~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~-~~~~G~~f~~~~~~ 205 (339)
+++++++||+|+.+||++.++|.++.+||++|.|+||.||.+|.+|+|+|+.++|..|++.+|++ .+++|+++ +|++
T Consensus 1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~~g~~i--~f~~ 78 (193)
T 2a25_A 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDI--VFLA 78 (193)
T ss_dssp -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEEESSEE--EEEE
T ss_pred CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcceecCceE--EEEe
Confidence 47899999999999999999999999999999999999999888899999999999999999997 56788875 4888
Q ss_pred cCCccccccceEEEEeeecCceEEEEeeeeecCC-CceEEEEEEEeCCccccCCcEEEEEEeeCCceEEEEeecceeccc
Q 019539 206 SNPREVENATWMLTVFHCFGQYFCLHFEAYQLGT-APVYMAFLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDC 284 (339)
Q Consensus 206 s~~~~~~~~~w~l~v~~cfg~~F~l~~~~~~~g~-~~v~~a~v~~iG~~~~a~~FsY~Lei~~~~r~L~~es~p~Si~~~ 284 (339)
++.++.+..+|++ +++|||++|+|+++++++++ .++|+++|++||++++|++|+|+|++.+++|+|+||++|+|++++
T Consensus 79 ~~~~l~~~~~~~~-v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~ 157 (193)
T 2a25_A 79 TDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEG 157 (193)
T ss_dssp ECCC----CEEEE-EEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTC
T ss_pred cccccccceeEEE-EEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhc
Confidence 8887777788974 89999999999999998765 467888899999999999999999999999999999999999999
Q ss_pred ccccccCCCceEEecCccceeeCCCceeeEEEEEEEE
Q 019539 285 HRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRI 321 (339)
Q Consensus 285 ~~~~~~~~d~L~i~~~~a~~f~~~~~~~l~l~V~~~i 321 (339)
+.+++++.|||+||++++++|+++ ++|+|+|+++.
T Consensus 158 ~~~~~~~~d~L~ip~~~~~~f~~~--~~L~l~v~I~~ 192 (193)
T 2a25_A 158 IATAIMNSDCLVFDTSIAQLFAEN--GNLGINVTISM 192 (193)
T ss_dssp SHHHHHTTCSEEEEHHHHHHHCSS--SEEEEEEEEEE
T ss_pred ccccccCCCEEEEcHHHHHhhcCC--CeEEEEEEEEe
Confidence 999999999999999999999865 57888886543
No 2
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.82 E-value=6.1e-21 Score=167.03 Aligned_cols=119 Identities=20% Similarity=0.411 Sum_probs=106.1
Q ss_pred ccCCCCeeeecccCccCcccceeccCCceeccccccccC----CCCCCccccccc---chhhHHHHHhhhccccCCCCCC
Q 019539 68 ATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVH----NRCPTCRQELGD---IRCLALEKVAESLELPCKYYHL 140 (339)
Q Consensus 68 ~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~~---~r~~alek~l~~l~v~C~~~~~ 140 (339)
.+.+++.|.||||++++.+|+. +++||+||..|+.++. ..||.||.++.. .++.++++++.+++++|+| .
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n--~ 88 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--E 88 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCS--T
T ss_pred ccCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCC--C
Confidence 4578999999999999999973 3449999999998863 489999999875 5789999999999999997 5
Q ss_pred CCCCccCcCcHHHHHhhCCCCCccCCCCCCCCccccChhHHHHHhhhcCCCCc
Q 019539 141 GCPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAHLRDDHKVDM 193 (339)
Q Consensus 141 GC~~~~~~~~~~~He~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~~ 193 (339)
||++.+++.++.+|+++|+|+++.||. |++.+.+.+|..|+........
T Consensus 89 GC~~~~~~~~l~~H~~~C~~~~v~C~~----C~~~~~r~~l~~H~~~~C~~r~ 137 (170)
T 3hcs_A 89 GCLHKMELRHLEDHQAHCEFALMDCPQ----CQRPFQKFHINIHILKDCPRRQ 137 (170)
T ss_dssp TCCCEEEGGGHHHHHTTCTTSEEECTT----TCCEEEGGGHHHHHHHTCTTCE
T ss_pred CCCceecHhHHHHHHhcCCceeeECCC----CChHHHHHHHHHHhhhhCCCCC
Confidence 999999999999999999999999982 9999999999999988877654
No 3
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.60 E-value=2.8e-16 Score=129.71 Aligned_cols=92 Identities=22% Similarity=0.488 Sum_probs=80.3
Q ss_pred CccCCCCeeeecccCccCcccc-eeccCCceeccccccccC----CCCCCccccccc---chhhHHHHHhhhccccCCCC
Q 019539 67 PATSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD---IRCLALEKVAESLELPCKYY 138 (339)
Q Consensus 67 ~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~~---~r~~alek~l~~l~v~C~~~ 138 (339)
..+.+.+.+.||||++++..|+ +.| ||+||..|+.++. ..||.||.++.. .++..+++++.++++.|+|
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n- 87 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPC--GHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN- 87 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS-
T ss_pred hccCCCCCCCCCcCChhhcCeEECCc--CChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC-
Confidence 4567889999999999999997 567 9999999998762 489999999875 4788999999999999997
Q ss_pred CCCCCCccCcCcHHHHHhhCCCCC
Q 019539 139 HLGCPEIFPYYSKLKHEVMCTFRP 162 (339)
Q Consensus 139 ~~GC~~~~~~~~~~~He~~C~f~p 162 (339)
.||+|.+++.++++|+++|.+..
T Consensus 88 -~gC~~~~~~~~l~~H~~~c~~~~ 110 (118)
T 3hct_A 88 -EGCLHKMELRHLEDHQAHCEFAL 110 (118)
T ss_dssp -TTCCCEEEGGGSGGGTSSSCC--
T ss_pred -CCCCCEEeeHHHHHHHHHchhhh
Confidence 79999999999999999887753
No 4
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.57 E-value=2.1e-16 Score=135.03 Aligned_cols=95 Identities=27% Similarity=0.433 Sum_probs=80.4
Q ss_pred CCcccCCccCCCCeeeecccCccCcccc-eeccCCceeccccccccC----CCCCCccccccc------------chhhH
Q 019539 61 GPTAIAPATSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD------------IRCLA 123 (339)
Q Consensus 61 ~~~~~~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~~------------~r~~a 123 (339)
|+......+.+++.|.||||++++..|+ +.| ||+||..|+.++. ..||.||.++.. .++.+
T Consensus 18 g~~~~~~~~~l~~~~~C~IC~~~~~~pv~~~C--gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~ 95 (141)
T 3knv_A 18 GFSKTLLGTKLEAKYLCSACRNVLRRPFQAQC--GHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNA 95 (141)
T ss_dssp SBCGGGTGGGCCGGGBCTTTCSBCSSEEECTT--SCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHH
T ss_pred CcchhhhhccCCcCcCCCCCChhhcCcEECCC--CCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHH
Confidence 4555555578899999999999999997 566 9999999999863 379999997521 37788
Q ss_pred HHHHhhhccccCCCCCCCCCCccCcCcHHH-HHhhCC
Q 019539 124 LEKVAESLELPCKYYHLGCPEIFPYYSKLK-HEVMCT 159 (339)
Q Consensus 124 lek~l~~l~v~C~~~~~GC~~~~~~~~~~~-He~~C~ 159 (339)
+++.+.+++++|+| .||.|.+++.++++ |+..|.
T Consensus 96 ~~~~i~~L~v~Cpn--~GC~~~~~l~~l~~~H~~~~~ 130 (141)
T 3knv_A 96 ARREVESLPAVCPS--DGCTWKGTLKEYESCHEGRCP 130 (141)
T ss_dssp HHHHHHTSEEECCS--TTCCCEEEHHHHHHHTTTCCH
T ss_pred HHHHHcccccccCC--CCCCCEeEHHHHHHHHHHHhH
Confidence 99999999999999 69999999999998 988764
No 5
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.56 E-value=5.6e-16 Score=127.19 Aligned_cols=89 Identities=20% Similarity=0.431 Sum_probs=78.0
Q ss_pred cCCCCeeeecccCccCcccc-eeccCCceecccccccc----CCCCCCccccccc----chhhHHHHHhhhccccCCCCC
Q 019539 69 TSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRV----HNRCPTCRQELGD----IRCLALEKVAESLELPCKYYH 139 (339)
Q Consensus 69 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~----~r~~alek~l~~l~v~C~~~~ 139 (339)
.++.+.+.||||++++..|+ +.| ||+||..|+.++ ...||.||.++.. ..+..+++++.++++.|+|.
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~- 94 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSC--KHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ- 94 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST-
T ss_pred HhccCCCCCCCCCcHhcCcEEcCC--CCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC-
Confidence 45677899999999999998 677 999999999875 2579999999864 34678999999999999995
Q ss_pred CCCCCccCcCcHHHHHhhCCCC
Q 019539 140 LGCPEIFPYYSKLKHEVMCTFR 161 (339)
Q Consensus 140 ~GC~~~~~~~~~~~He~~C~f~ 161 (339)
||++.+++.++.+|+++|.+.
T Consensus 95 -gC~~~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 95 -DCNEEVSLEKYNHHVSSHKES 115 (116)
T ss_dssp -TCCCEEEHHHHHHHHHTSCCC
T ss_pred -CCcchhhHhHHHHHHHHhhcc
Confidence 999999999999999999874
No 6
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.00 E-value=1.2e-10 Score=91.19 Aligned_cols=68 Identities=24% Similarity=0.531 Sum_probs=55.5
Q ss_pred ccCCCCeeeecccCccCcccc-ee-ccCCceeccccccccC-----CCCCCcccccc----cchhhHHHHHhhhccccCC
Q 019539 68 ATSVHELLECPVCTNSMYPPI-HQ-CHNGHTLCSTCKTRVH-----NRCPTCRQELG----DIRCLALEKVAESLELPCK 136 (339)
Q Consensus 68 ~~~l~~~l~CpIC~~~l~~Pi-~q-C~~GH~fC~~C~~~~~-----~~CP~Cr~~~~----~~r~~alek~l~~l~v~C~ 136 (339)
.+.+.+.+.||||+++|..|+ +. | ||+||..|+.++. ..||.||..+. ..+|..++++++.++..-.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCC--GNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTT--CCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred cccCCcCCCCCCCChhhcCceECCCC--CCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 356788999999999999998 56 7 9999999998762 48999999973 2678889999888765443
Q ss_pred C
Q 019539 137 Y 137 (339)
Q Consensus 137 ~ 137 (339)
+
T Consensus 85 ~ 85 (92)
T 3ztg_A 85 Y 85 (92)
T ss_dssp C
T ss_pred H
Confidence 3
No 7
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.96 E-value=1.1e-10 Score=88.62 Aligned_cols=62 Identities=18% Similarity=0.325 Sum_probs=51.4
Q ss_pred cCCCCeeeecccCccCcccc-eeccCCceeccccccccC----CCCCCccccccc---chhhHHHHHhhhcc
Q 019539 69 TSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD---IRCLALEKVAESLE 132 (339)
Q Consensus 69 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~~---~r~~alek~l~~l~ 132 (339)
.++++.+.||||+++|.+|+ +.| ||+||..|+.++. ..||.||.++.. .+|..++++++.+.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~C--gH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVST--GQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETT--TEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cCCcccCCCCCccccccCCEEcCC--CCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 45788999999999999998 677 9999999998762 569999999863 56788888877654
No 8
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.93 E-value=1.2e-10 Score=88.26 Aligned_cols=50 Identities=32% Similarity=0.836 Sum_probs=42.6
Q ss_pred CccCCCCeeeecccCccCcccc-eeccCCceeccccccccC----------CCCCCccccccc
Q 019539 67 PATSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----------NRCPTCRQELGD 118 (339)
Q Consensus 67 ~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~----------~~CP~Cr~~~~~ 118 (339)
..+.+.+.+.|+||++.+..|+ +.| ||.||..|+.++. ..||.||..+..
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~~l~C--gH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPLSLDC--GHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCCCCSS--SCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hHhhcccCCCCcCCCcccCCeeECCC--CCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4567889999999999999997 677 9999999998652 469999998863
No 9
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.92 E-value=1.3e-10 Score=92.43 Aligned_cols=71 Identities=27% Similarity=0.643 Sum_probs=57.0
Q ss_pred CCcccCCccCCCCeeeecccCccCcccc-e-eccCCceecccccccc---CCCCCCccccccc---chhhHHHHHhhhcc
Q 019539 61 GPTAIAPATSVHELLECPVCTNSMYPPI-H-QCHNGHTLCSTCKTRV---HNRCPTCRQELGD---IRCLALEKVAESLE 132 (339)
Q Consensus 61 ~~~~~~~~~~l~~~l~CpIC~~~l~~Pi-~-qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~alek~l~~l~ 132 (339)
+.......+.+.+.+.|+||++.+..|+ + .| ||.||..|+.++ ...||.||..+.. .+|..++++++.++
T Consensus 9 ~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 9 WPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQC--SHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLN 86 (99)
T ss_dssp CCGGGGGGHHHHHHTBCTTTCSBCSSEEECTTT--CCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred CCcchhHHHhCCCCCCcccCChhhCCcCEECCC--CCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence 3444455667788999999999999997 4 67 999999999876 3589999999863 57888888887765
Q ss_pred c
Q 019539 133 L 133 (339)
Q Consensus 133 v 133 (339)
-
T Consensus 87 ~ 87 (99)
T 2y43_A 87 F 87 (99)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=5.7e-10 Score=83.33 Aligned_cols=51 Identities=27% Similarity=0.853 Sum_probs=43.1
Q ss_pred CCccCCCCeeeecccCccCcccc-eeccCCceeccccccccCC------CCCCccccccc
Q 019539 66 APATSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVHN------RCPTCRQELGD 118 (339)
Q Consensus 66 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~~------~CP~Cr~~~~~ 118 (339)
...+.+.+.+.|+||++.+..|+ +.| ||.||..|+.++.. .||.||.++..
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 12 QFVNKLQEEVICPICLDILQKPVTIDC--GHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSEEECTT--CCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHHHhCccCCEeccCCcccCCeEEcCC--CChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 44567888999999999999997 677 99999999987642 79999998753
No 11
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=1.7e-10 Score=94.63 Aligned_cols=67 Identities=25% Similarity=0.514 Sum_probs=54.1
Q ss_pred ccCCccCCCCeeeecccCccCcccc-e-eccCCceeccccccccC-CCCCCccccccc---chhhHHHHHhhhcc
Q 019539 64 AIAPATSVHELLECPVCTNSMYPPI-H-QCHNGHTLCSTCKTRVH-NRCPTCRQELGD---IRCLALEKVAESLE 132 (339)
Q Consensus 64 ~~~~~~~l~~~l~CpIC~~~l~~Pi-~-qC~~GH~fC~~C~~~~~-~~CP~Cr~~~~~---~r~~alek~l~~l~ 132 (339)
.....+.+.+.+.||||++++..|+ + .| ||+||..|+.++. ..||.||.++.. .+|..+.+++..++
T Consensus 12 ~~~~~~~l~~~~~C~IC~~~~~~pv~~~~C--gH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~ 84 (117)
T 1jm7_B 12 SRAALDRLEKLLRCSRCTNILREPVCLGGC--EHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCS 84 (117)
T ss_dssp HHHHHHHHHHTTSCSSSCSCCSSCBCCCSS--SCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred hHHHHHhchhCCCCCCCChHhhCccEeCCC--CCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHHH
Confidence 3445567788999999999999998 5 67 9999999999875 489999999853 46777877776543
No 12
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=2.6e-10 Score=87.08 Aligned_cols=50 Identities=32% Similarity=0.846 Sum_probs=42.7
Q ss_pred CccCCCCeeeecccCccCcccc-eeccCCceecccccccc---------CCCCCCccccccc
Q 019539 67 PATSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRV---------HNRCPTCRQELGD 118 (339)
Q Consensus 67 ~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---------~~~CP~Cr~~~~~ 118 (339)
..+.+.+.+.|+||++.+..|+ +.| ||.||..|+.++ ...||.||..+..
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDC--GHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSS--SCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHHHccCCCCCCCCCcccCCceeCCC--CCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4467888999999999999997 677 999999999865 3679999998763
No 13
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.87 E-value=1.2e-09 Score=87.44 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=54.6
Q ss_pred ccCCCCeeeecccCccCcccc-eeccCC-ceeccccccccC---CCCCCccccccc---chhhHHHHHhhhccc
Q 019539 68 ATSVHELLECPVCTNSMYPPI-HQCHNG-HTLCSTCKTRVH---NRCPTCRQELGD---IRCLALEKVAESLEL 133 (339)
Q Consensus 68 ~~~l~~~l~CpIC~~~l~~Pi-~qC~~G-H~fC~~C~~~~~---~~CP~Cr~~~~~---~r~~alek~l~~l~v 133 (339)
...+++.|.||||+++|++|| +.| | |+||+.|+.++. ..||.|+.++.. ++|..++++++.+..
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~c--G~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 87 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPS--SRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLA 87 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTT--TCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHH
T ss_pred hhcCcHhcCCcCccccccCCeECCC--CCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHH
Confidence 356788999999999999998 577 8 999999998873 579999999864 688899998887754
No 14
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.85 E-value=1.1e-09 Score=85.23 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=53.5
Q ss_pred ccCCCCeeeecccCccCcccc-eeccCCceecccccccc---CCCCCCccccccc---chhhHHHHHhhhcc
Q 019539 68 ATSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD---IRCLALEKVAESLE 132 (339)
Q Consensus 68 ~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~alek~l~~l~ 132 (339)
...+++.|.||||+++|++|| ..| ||+||+.|+.++ ...||.|+.++.. .+|.++.++++.+.
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~c--Ghtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPS--GTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCC--CCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence 356788999999999999998 577 999999999886 3689999999864 67888888887664
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.5e-09 Score=82.96 Aligned_cols=59 Identities=22% Similarity=0.532 Sum_probs=46.0
Q ss_pred cCCCCeeeecccCccCcccc-eeccCCceecccccccc---CCCCCCccccccc--chhhHHHHHhh
Q 019539 69 TSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD--IRCLALEKVAE 129 (339)
Q Consensus 69 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~--~r~~alek~l~ 129 (339)
++..+.+.|+||++.+..|+ +.| ||+||..|+.++ ...||.||.++.. ..+..+.+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKC--RHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQ 74 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTT--SCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHHHHHHS
T ss_pred ccCCCCCCCcCCCchhcCeeEccC--CCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHHHHHHH
Confidence 45677899999999999997 678 999999999876 3689999999863 34444444433
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.83 E-value=2.7e-10 Score=86.99 Aligned_cols=58 Identities=26% Similarity=0.657 Sum_probs=45.6
Q ss_pred CccCCCCeeeecccCccCcccc-eeccCCceecccccccc---------CCCCCCccccccc---chhhHHHH
Q 019539 67 PATSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRV---------HNRCPTCRQELGD---IRCLALEK 126 (339)
Q Consensus 67 ~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---------~~~CP~Cr~~~~~---~r~~alek 126 (339)
..+++.+.+.|+||++.+..|+ +.| ||.||..|+.++ ...||.||..+.. .+|..+++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADC--NHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTT--SCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred HHHhCccCCCCcCCChhhCcceeCCC--CCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 4466788999999999999997 677 999999999864 3579999998863 34444433
No 17
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.82 E-value=1.3e-09 Score=87.60 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=54.5
Q ss_pred ccCCCCeeeecccCccCcccc-eeccCCceeccccccccC---CCCCCccccccc---chhhHHHHHhhhccc
Q 019539 68 ATSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH---NRCPTCRQELGD---IRCLALEKVAESLEL 133 (339)
Q Consensus 68 ~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~---~~CP~Cr~~~~~---~r~~alek~l~~l~v 133 (339)
..++++.|.||||+++|++|| ..| ||+||+.|+.++. ..||.|+.++.. .+|..+.++++.+.-
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~c--Ghtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 93 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPS--GTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMR 93 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETT--TEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHH
T ss_pred hccCcHhhCCcCccCcccCCeECCC--CCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHH
Confidence 346788999999999999998 677 9999999998873 589999999864 688889988887653
No 18
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.80 E-value=2e-10 Score=91.80 Aligned_cols=63 Identities=25% Similarity=0.610 Sum_probs=48.6
Q ss_pred cCCccCCCCeeeecccCccCcccce--eccCCceecccccccc---C-CCCCCccccccc---chhhHHHHHhh
Q 019539 65 IAPATSVHELLECPVCTNSMYPPIH--QCHNGHTLCSTCKTRV---H-NRCPTCRQELGD---IRCLALEKVAE 129 (339)
Q Consensus 65 ~~~~~~l~~~l~CpIC~~~l~~Pi~--qC~~GH~fC~~C~~~~---~-~~CP~Cr~~~~~---~r~~alek~l~ 129 (339)
......+.+.+.|+||++++..|+. .| ||+||..|+.++ . ..||.||.++.. .+++.++.+++
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~p~~~~~C--gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~ 84 (100)
T 3lrq_A 13 EQSVESIAEVFRCFICMEKLRDARLCPHC--SKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQ 84 (100)
T ss_dssp HHHHHHHHHHTBCTTTCSBCSSEEECTTT--CCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHH
T ss_pred ccccccCCCCCCCccCCccccCccccCCC--CChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHH
Confidence 3444678899999999999999974 67 999999999876 2 589999999864 34554444443
No 19
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.76 E-value=5.3e-10 Score=92.44 Aligned_cols=64 Identities=31% Similarity=0.681 Sum_probs=52.8
Q ss_pred CccCCCCeeeecccCccCcccc-eeccCCceeccccccccC----CCCCCccccccc----chhhHHHHHhhhcc
Q 019539 67 PATSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD----IRCLALEKVAESLE 132 (339)
Q Consensus 67 ~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~~----~r~~alek~l~~l~ 132 (339)
....+.+.+.||||.+++..|+ +.| ||+||..|+.++. ..||.||.++.. .+|..+.++++.+.
T Consensus 45 ~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 117 (124)
T 3fl2_A 45 FLSKVEETFQCICCQELVFRPITTVC--QHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLF 117 (124)
T ss_dssp HHHHHHHHTBCTTTSSBCSSEEECTT--SCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHS
T ss_pred HHHhCccCCCCCcCChHHcCcEEeeC--CCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHc
Confidence 3456778899999999999998 677 9999999998752 389999999864 57888888887654
No 20
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=3.6e-09 Score=75.71 Aligned_cols=46 Identities=30% Similarity=0.631 Sum_probs=40.3
Q ss_pred CCCeeeecccCccCcccc-eeccCCceeccccccccCCCCCCccccccc
Q 019539 71 VHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVHNRCPTCRQELGD 118 (339)
Q Consensus 71 l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~~~CP~Cr~~~~~ 118 (339)
..+.+.|+||++.+..|+ +.| ||+||..|+.+....||.||..+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~C--gH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPC--LHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTT--SCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEEcCC--CCcccHHHHccCCCCCCcCCcEeec
Confidence 457888999999999997 788 9999999998876789999998753
No 21
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=3e-09 Score=79.57 Aligned_cols=50 Identities=26% Similarity=0.706 Sum_probs=42.8
Q ss_pred CccCCCCeeeecccCccCcccc-e-eccCCceecccccccc---CCCCCCccccccc
Q 019539 67 PATSVHELLECPVCTNSMYPPI-H-QCHNGHTLCSTCKTRV---HNRCPTCRQELGD 118 (339)
Q Consensus 67 ~~~~l~~~l~CpIC~~~l~~Pi-~-qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 118 (339)
..+++++.+.|+||++.+..|+ + .| ||.||..|+.++ ...||.||.++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITEC--LHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSS--CCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCC--CCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 3467888999999999999997 3 78 999999999876 3689999998764
No 22
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=2.8e-09 Score=77.51 Aligned_cols=45 Identities=31% Similarity=0.906 Sum_probs=38.0
Q ss_pred CCccCCCCeeeecccCccCcccc-eeccCCceeccccccccC------CCCCCc
Q 019539 66 APATSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH------NRCPTC 112 (339)
Q Consensus 66 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~------~~CP~C 112 (339)
...+.+.+.+.|+||++.+..|+ +.| ||+||..|+.++. ..||+|
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 12 QFVNKLQEEVICPICLDILQKPVTIDC--GHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSCEECTT--SSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHhCccCCCCCcCCchhCCeEEeCC--CCcchHHHHHHHHHcCCCCCcCcCC
Confidence 44567889999999999999997 677 9999999998763 369987
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.71 E-value=4.4e-09 Score=79.22 Aligned_cols=49 Identities=27% Similarity=0.685 Sum_probs=41.6
Q ss_pred CccCCCCeeeecccCccCcccc-ee-ccCCceeccccccccC-----CCCCCcccccc
Q 019539 67 PATSVHELLECPVCTNSMYPPI-HQ-CHNGHTLCSTCKTRVH-----NRCPTCRQELG 117 (339)
Q Consensus 67 ~~~~l~~~l~CpIC~~~l~~Pi-~q-C~~GH~fC~~C~~~~~-----~~CP~Cr~~~~ 117 (339)
..+++.+.+.|+||++++..|+ +. | ||+||..|+.++. ..||.||.++.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCC--GNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSS--CCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCC--CCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3466788999999999999998 56 7 9999999998763 47999999753
No 24
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.71 E-value=2.4e-09 Score=86.32 Aligned_cols=63 Identities=24% Similarity=0.526 Sum_probs=51.6
Q ss_pred ccCCCCeeeecccCccCcccc-e-eccCCceecccccccc---CCCCCCccccccc-------chhhHHHHHhhhcc
Q 019539 68 ATSVHELLECPVCTNSMYPPI-H-QCHNGHTLCSTCKTRV---HNRCPTCRQELGD-------IRCLALEKVAESLE 132 (339)
Q Consensus 68 ~~~l~~~l~CpIC~~~l~~Pi-~-qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~-------~r~~alek~l~~l~ 132 (339)
.+++.+.+.|+||.+++..|+ + .| ||+||..|+.++ ...||.||..+.. .+|..++++++.+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTIIEC--LHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEETTT--CCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred hhccCCcCCCccCChHHhCcCEeCCC--CChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 456788999999999999998 4 67 999999999876 3689999998763 35677888877653
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.71 E-value=2.2e-09 Score=90.54 Aligned_cols=58 Identities=24% Similarity=0.686 Sum_probs=44.6
Q ss_pred CCCCeeeecccCccCcccc-eeccCCceeccccccccC---CCCCCccccccc-chhhHHHHHhh
Q 019539 70 SVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH---NRCPTCRQELGD-IRCLALEKVAE 129 (339)
Q Consensus 70 ~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~---~~CP~Cr~~~~~-~r~~alek~l~ 129 (339)
.+++.+.||||.+.+..|+ +.| ||.||..|+.++. ..||.||.++.. ..+..+..+++
T Consensus 49 ~~~~~~~C~iC~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~ 111 (138)
T 4ayc_A 49 VLENELQCIICSEYFIEAVTLNC--AHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCIN 111 (138)
T ss_dssp HHHHHSBCTTTCSBCSSEEEETT--SCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHH
T ss_pred hccccCCCcccCcccCCceECCC--CCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHH
Confidence 3456789999999999998 677 9999999998763 679999999864 23444444333
No 26
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.71 E-value=3.5e-09 Score=91.66 Aligned_cols=69 Identities=23% Similarity=0.599 Sum_probs=52.9
Q ss_pred cccCCccCCCCeeeecccCccCcccce--eccCCceecccccccc----CCCCCCccccccc----chhhHHHHHhhhcc
Q 019539 63 TAIAPATSVHELLECPVCTNSMYPPIH--QCHNGHTLCSTCKTRV----HNRCPTCRQELGD----IRCLALEKVAESLE 132 (339)
Q Consensus 63 ~~~~~~~~l~~~l~CpIC~~~l~~Pi~--qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~----~r~~alek~l~~l~ 132 (339)
........+.+.+.||||++.+..|+. .| ||.||..|+.++ ...||.||..+.. .++..+++++..+.
T Consensus 43 ~~~~~~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~ 120 (165)
T 2ckl_B 43 EIVVSPRSLHSELMCPICLDMLKNTMTTKEC--LHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIY 120 (165)
T ss_dssp EEC----CCHHHHBCTTTSSBCSSEEEETTT--CCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC
T ss_pred ccccchhhCCCCCCCcccChHhhCcCEeCCC--CChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHH
Confidence 333445667889999999999999973 67 999999999886 3569999999853 46788999888775
Q ss_pred c
Q 019539 133 L 133 (339)
Q Consensus 133 v 133 (339)
-
T Consensus 121 ~ 121 (165)
T 2ckl_B 121 P 121 (165)
T ss_dssp -
T ss_pred c
Confidence 4
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=6e-09 Score=76.52 Aligned_cols=49 Identities=22% Similarity=0.758 Sum_probs=41.9
Q ss_pred ccCCCCeeeecccCccCcccc-eeccCCceeccccccccC----CCCCCccccccc
Q 019539 68 ATSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD 118 (339)
Q Consensus 68 ~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~~ 118 (339)
.+.+++.+.|+||++.+..|+ +.| ||.||..|+.++. ..||.||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTEC--GHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSS--SCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred hhcCCcCCCCCCCChHhcCeeECCC--CCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 356788999999999999997 677 9999999998763 579999998753
No 28
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.68 E-value=2.4e-09 Score=91.91 Aligned_cols=62 Identities=27% Similarity=0.717 Sum_probs=52.0
Q ss_pred cCCCCeeeecccCccCcccc-eeccCCceeccccccccC----CCCCCccccccc----chhhHHHHHhhhcc
Q 019539 69 TSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD----IRCLALEKVAESLE 132 (339)
Q Consensus 69 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~~----~r~~alek~l~~l~ 132 (339)
..+.+.+.|+||++++..|+ +.| ||+||..|+.++. ..||.||.++.. .+|..++++++.+.
T Consensus 73 ~~l~~~~~C~IC~~~~~~pv~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 73 KKLEQSFMCVCCQELVYQPVTTEC--FHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHHHHTBCTTTSSBCSSEEECTT--SCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred HhCccCCEeecCChhhcCCEEcCC--CCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 44567899999999999998 677 9999999998763 379999999874 47888999888764
No 29
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.1e-08 Score=76.17 Aligned_cols=46 Identities=30% Similarity=0.786 Sum_probs=39.5
Q ss_pred CCCCeeeecccCccCcccc-eeccCCceeccccccccC---CCCCCcccccc
Q 019539 70 SVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH---NRCPTCRQELG 117 (339)
Q Consensus 70 ~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~---~~CP~Cr~~~~ 117 (339)
...+.+.|+||++.+..|+ +.| ||.||..|+.++. ..||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPC--KHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETT--TEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred cCCCCCCCccCCcccCCCEEccC--CCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 3457789999999999997 678 9999999998763 67999999875
No 30
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.65 E-value=8.7e-09 Score=79.06 Aligned_cols=51 Identities=25% Similarity=0.724 Sum_probs=40.5
Q ss_pred ccCCCCeeeecccCccCc--ccc-eeccCCceeccccccccC----CCCCCccccccc
Q 019539 68 ATSVHELLECPVCTNSMY--PPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD 118 (339)
Q Consensus 68 ~~~l~~~l~CpIC~~~l~--~Pi-~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~~ 118 (339)
..++++.+.||||++++. ++. +.|.+||.||..|+.++. ..||.||+++..
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 356788999999999995 344 454459999999998763 589999998864
No 31
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.64 E-value=8.8e-09 Score=83.85 Aligned_cols=47 Identities=28% Similarity=0.719 Sum_probs=40.8
Q ss_pred cCCCCeeeecccCccCcccc-eeccCCceeccccccccC----CCCCCcccccc
Q 019539 69 TSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELG 117 (339)
Q Consensus 69 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~ 117 (339)
..+.+.+.|+||++.+..|+ +.| ||+||..|+.++. ..||.||..+.
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPC--NHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTT--SCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred cCCCCCCCCccCCcccCceeEcCC--CCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 45677899999999999998 677 9999999998863 47999999875
No 32
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=7.5e-09 Score=75.99 Aligned_cols=49 Identities=31% Similarity=0.858 Sum_probs=41.0
Q ss_pred CccCCCCeeeecccCccCccc-------c-eeccCCceecccccccc---CCCCCCcccccc
Q 019539 67 PATSVHELLECPVCTNSMYPP-------I-HQCHNGHTLCSTCKTRV---HNRCPTCRQELG 117 (339)
Q Consensus 67 ~~~~l~~~l~CpIC~~~l~~P-------i-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~ 117 (339)
....+.+.+.|+||++.+..| + +.| ||.||..|+.++ ...||.||.++.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSS--SCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCC--CChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 345677889999999999876 4 578 999999999876 368999999875
No 33
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=8.3e-09 Score=81.59 Aligned_cols=62 Identities=27% Similarity=0.533 Sum_probs=50.7
Q ss_pred CCCCeeeecccCccCcccc-e-eccCCceeccccccccC---------CCCCC--cccc-ccc---chhhHHHHHhhhcc
Q 019539 70 SVHELLECPVCTNSMYPPI-H-QCHNGHTLCSTCKTRVH---------NRCPT--CRQE-LGD---IRCLALEKVAESLE 132 (339)
Q Consensus 70 ~l~~~l~CpIC~~~l~~Pi-~-qC~~GH~fC~~C~~~~~---------~~CP~--Cr~~-~~~---~r~~alek~l~~l~ 132 (339)
...+.|.||||+++|.+|| . .| ||+||+.|+.++. ..||. |+.. +.. .+|..|+++++.++
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~c--Gh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVC--GHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSS--CCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred CCCcEeECcCcCchhcCCEEcCCC--CCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 4567899999999999998 4 38 9999999998763 28999 9865 542 68899999998775
Q ss_pred c
Q 019539 133 L 133 (339)
Q Consensus 133 v 133 (339)
-
T Consensus 81 ~ 81 (94)
T 2yu4_A 81 K 81 (94)
T ss_dssp T
T ss_pred H
Confidence 4
No 34
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=1.8e-08 Score=92.94 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=53.1
Q ss_pred cCCCCeeeecccCccCcccc-eeccCCceeccccccccC----CCCCCccccccc---chhhHHHHHhhhccc
Q 019539 69 TSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD---IRCLALEKVAESLEL 133 (339)
Q Consensus 69 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~~---~r~~alek~l~~l~v 133 (339)
.++++.|.||||.++|.+|| +.| ||+||+.|+.++. ..||.|+.++.. ++|..++++++.+.-
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~--gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPS--GITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSS--CCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHT
T ss_pred CCCCcccCCcCcCCHhcCCeECCC--CCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHH
Confidence 35678999999999999998 677 9999999998762 349999999864 688999999887654
No 35
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=2.5e-08 Score=76.71 Aligned_cols=50 Identities=36% Similarity=0.870 Sum_probs=41.9
Q ss_pred CccCCCCeeeecccCccCcc----cc-eeccCCceeccccccccC------CCCCCccccccc
Q 019539 67 PATSVHELLECPVCTNSMYP----PI-HQCHNGHTLCSTCKTRVH------NRCPTCRQELGD 118 (339)
Q Consensus 67 ~~~~l~~~l~CpIC~~~l~~----Pi-~qC~~GH~fC~~C~~~~~------~~CP~Cr~~~~~ 118 (339)
..+.+.+.+.|+||++.+.. |+ +.| ||.||..|+.++. ..||.||..+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHC--GHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSS--SCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCC--CChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 34567889999999999998 86 678 9999999998762 579999998753
No 36
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.55 E-value=2.1e-09 Score=86.74 Aligned_cols=48 Identities=27% Similarity=0.963 Sum_probs=40.2
Q ss_pred cCCCCeeeecccCccCcccc-eeccCCceeccccccccC------CCCCCccccccc
Q 019539 69 TSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH------NRCPTCRQELGD 118 (339)
Q Consensus 69 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~------~~CP~Cr~~~~~ 118 (339)
+.+.+.+.|+||++.+..|+ +.| ||.||..|+.++. ..||.||.++..
T Consensus 16 ~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 16 NAMQKILECPICLELIKEPVSTKC--DHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHHHHTSCSSSCCCCSSCCBCTT--SCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred HhccCCCCCcccChhhcCeEECCC--CCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 34567889999999999997 677 9999999998762 279999998863
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=3e-08 Score=70.42 Aligned_cols=44 Identities=32% Similarity=0.838 Sum_probs=37.1
Q ss_pred CccCCCCeeeecccCccCcccc-eeccCCceeccccccccC------CCCCCc
Q 019539 67 PATSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH------NRCPTC 112 (339)
Q Consensus 67 ~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~------~~CP~C 112 (339)
..+.+.+.+.|+||++.+..|+ +.| ||+||..|+.++. ..||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVIIEC--GHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCCSS--CCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeCCC--CCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456788999999999999997 678 9999999998761 468887
No 38
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=2.1e-08 Score=75.77 Aligned_cols=48 Identities=25% Similarity=0.661 Sum_probs=41.5
Q ss_pred ccCCCCeeeecccCccCcccc-eeccCCce-eccccccccCCCCCCccccccc
Q 019539 68 ATSVHELLECPVCTNSMYPPI-HQCHNGHT-LCSTCKTRVHNRCPTCRQELGD 118 (339)
Q Consensus 68 ~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~~~~CP~Cr~~~~~ 118 (339)
.+++.+.+.|+||++.+..|+ +.| ||. ||..|+.++ ..||.||.++..
T Consensus 19 ~~~~~~~~~C~IC~~~~~~~~~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 19 LRRLQEEKLCKICMDRNIAIVFVPC--GHLVTCKQCAEAV-DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHHSCSSSCSSCCCBCCSSS--CCCCBCHHHHHHC-SBCTTTCCBCCC
T ss_pred HHcCCCCCCCCcCCCCCCCEEEecC--CCHHHHHHHhhCC-CCCccCCceecC
Confidence 345677889999999999998 588 999 999999876 799999998864
No 39
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.45 E-value=2.4e-08 Score=73.83 Aligned_cols=47 Identities=32% Similarity=0.902 Sum_probs=39.4
Q ss_pred CCCCeeeecccCccCccc-------c-eeccCCceecccccccc---CCCCCCccccccc
Q 019539 70 SVHELLECPVCTNSMYPP-------I-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 118 (339)
Q Consensus 70 ~l~~~l~CpIC~~~l~~P-------i-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 118 (339)
...+.+.|+||++.+..| + ..| ||.||..|+.++ ...||.||.++..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTT--SCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCC--CChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 456788999999999887 4 577 999999999876 3689999998763
No 40
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.45 E-value=5.3e-08 Score=86.08 Aligned_cols=63 Identities=19% Similarity=0.175 Sum_probs=53.2
Q ss_pred cCCCCeeeecccCccCcccc-eeccCCceeccccccccC----CCCCCccccccc---chhhHHHHHhhhccc
Q 019539 69 TSVHELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVH----NRCPTCRQELGD---IRCLALEKVAESLEL 133 (339)
Q Consensus 69 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~~---~r~~alek~l~~l~v 133 (339)
.++++.|.||||+++|.+|| ..| ||+||..|+.++. ..||.|+.++.. .+|.++.++++.+.-
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~--Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~ 171 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPS--GITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQ 171 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred cCCcHhhcccCccccCCCCeECCC--CCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHH
Confidence 46789999999999999998 566 9999999998762 359999999864 688999998887653
No 41
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.40 E-value=1.9e-07 Score=70.43 Aligned_cols=48 Identities=33% Similarity=0.713 Sum_probs=39.3
Q ss_pred cCCCCeeeecccCccCcccc----eeccCCceecccccccc---CCCCCCccccccc
Q 019539 69 TSVHELLECPVCTNSMYPPI----HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 118 (339)
Q Consensus 69 ~~l~~~l~CpIC~~~l~~Pi----~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 118 (339)
+.+.+.+.|+||++.+..+. +.| ||.||..|+.++ ...||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C--~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPC--NHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTT--SCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCC--CCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 45667889999999998663 367 999999999876 3689999998763
No 42
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.38 E-value=3e-08 Score=74.85 Aligned_cols=47 Identities=26% Similarity=0.684 Sum_probs=41.4
Q ss_pred cCCCCeeeecccCccCcccc-eeccCCce-eccccccccCCCCCCccccccc
Q 019539 69 TSVHELLECPVCTNSMYPPI-HQCHNGHT-LCSTCKTRVHNRCPTCRQELGD 118 (339)
Q Consensus 69 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~~~~CP~Cr~~~~~ 118 (339)
+.+.+.+.|+||++.+..|+ +.| ||. ||..|+.++ ..||.||.++..
T Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 19 RRLQEEKLCKICMDRNIAIVFVPC--GHLVTCKQCAEAV-DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHTBCTTTSSSBCCEEEETT--CCBCCCHHHHTTC-SBCTTTCCBCSE
T ss_pred hcCccCCCCCCCCCCCCCEEEcCC--CChhHHHHhhhcC-ccCCCcCcCccC
Confidence 35667889999999999998 588 999 999999987 899999998864
No 43
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=7.7e-08 Score=71.15 Aligned_cols=48 Identities=25% Similarity=0.710 Sum_probs=40.2
Q ss_pred cCCCCeeeecccCccCcccceeccCCceeccccccccC---CCCCCccccccc
Q 019539 69 TSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVH---NRCPTCRQELGD 118 (339)
Q Consensus 69 ~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~---~~CP~Cr~~~~~ 118 (339)
.++.+.+.|+||++.+..-++.| ||.||..|+.++. ..||.||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRADLILPC--AHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCSSSCCSCCSEEETT--TEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred hcCCCCCCCeeCCcCccCcccCC--CCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 45678899999999999833688 9999999998763 689999998753
No 44
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=1.7e-07 Score=70.01 Aligned_cols=48 Identities=21% Similarity=0.504 Sum_probs=39.6
Q ss_pred cCCCCeeeecccCccCcccc-e---eccCCceecccccccc---CCCCCCccccccc
Q 019539 69 TSVHELLECPVCTNSMYPPI-H---QCHNGHTLCSTCKTRV---HNRCPTCRQELGD 118 (339)
Q Consensus 69 ~~l~~~l~CpIC~~~l~~Pi-~---qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 118 (339)
.++.+...|+||++.+..+. + .| ||.||..|+.++ ...||.||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C--~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPC--KHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETT--TEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCC--CCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 45677889999999998764 2 67 999999999876 3689999998754
No 45
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.37 E-value=4.1e-08 Score=71.75 Aligned_cols=44 Identities=34% Similarity=0.862 Sum_probs=36.6
Q ss_pred CeeeecccCc-cCcccc-----eeccCCceecccccccc----CCCCCCccccccc
Q 019539 73 ELLECPVCTN-SMYPPI-----HQCHNGHTLCSTCKTRV----HNRCPTCRQELGD 118 (339)
Q Consensus 73 ~~l~CpIC~~-~l~~Pi-----~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~ 118 (339)
+.+.||||++ ++..|+ ..| ||+||..|+.++ ...||.||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVC--GHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTT--CCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCC--CCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4578999999 888883 478 999999999876 2579999998753
No 46
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.33 E-value=6.6e-08 Score=69.76 Aligned_cols=44 Identities=34% Similarity=1.017 Sum_probs=37.0
Q ss_pred CeeeecccCccCccc-------c-eeccCCceecccccccc---CCCCCCccccccc
Q 019539 73 ELLECPVCTNSMYPP-------I-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 118 (339)
Q Consensus 73 ~~l~CpIC~~~l~~P-------i-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 118 (339)
+.+.|+||++.+..| + ..| ||.||..|+.++ ...||.||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETT--SCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCC--CCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 467899999999876 4 577 999999999876 3689999998763
No 47
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=4.7e-07 Score=67.92 Aligned_cols=47 Identities=26% Similarity=0.600 Sum_probs=38.6
Q ss_pred CCCCeeeecccCccCccc---c-eeccCCceecccccccc---CCCCCCccccccc
Q 019539 70 SVHELLECPVCTNSMYPP---I-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 118 (339)
Q Consensus 70 ~l~~~l~CpIC~~~l~~P---i-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 118 (339)
...+...|+||++.+..+ + +.| ||.||..|+.++ ...||.||.++..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C--~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPC--NHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETT--TEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECC--CCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 345778899999999876 3 567 999999999886 3689999998753
No 48
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.30 E-value=2.6e-07 Score=64.92 Aligned_cols=45 Identities=29% Similarity=0.696 Sum_probs=36.4
Q ss_pred CCCeeeecccCccCcc---cc-ee-ccCCceecccccccc---CCCCCCcccccc
Q 019539 71 VHELLECPVCTNSMYP---PI-HQ-CHNGHTLCSTCKTRV---HNRCPTCRQELG 117 (339)
Q Consensus 71 l~~~l~CpIC~~~l~~---Pi-~q-C~~GH~fC~~C~~~~---~~~CP~Cr~~~~ 117 (339)
+++...|+||++.+.. ++ +. | ||.||..|+.++ ...||.||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C--~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRC--GHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSS--CCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCC--CCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567889999999986 44 43 7 999999999886 368999998763
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.24 E-value=2.5e-07 Score=86.07 Aligned_cols=62 Identities=19% Similarity=0.374 Sum_probs=50.8
Q ss_pred cCCCCeeeecccCccCcccce--eccCCceeccccccccC-----CCCCC--ccccccc---chhhHHHHHhhhcc
Q 019539 69 TSVHELLECPVCTNSMYPPIH--QCHNGHTLCSTCKTRVH-----NRCPT--CRQELGD---IRCLALEKVAESLE 132 (339)
Q Consensus 69 ~~l~~~l~CpIC~~~l~~Pi~--qC~~GH~fC~~C~~~~~-----~~CP~--Cr~~~~~---~r~~alek~l~~l~ 132 (339)
+.....+.||||+++|..||. .| ||+||+.|+.++. ..||. |+..+.. .+|..|.++++.++
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~C--GHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k 249 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKC--NHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAK 249 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSS--CCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHH
T ss_pred cCCceeeECcCccCcccCCeeeCCC--CCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHH
Confidence 456788999999999999984 78 9999999998763 36999 9998753 57888888776644
No 50
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.23 E-value=3.1e-07 Score=64.41 Aligned_cols=43 Identities=30% Similarity=0.708 Sum_probs=35.4
Q ss_pred CeeeecccCccCcc----cc-eeccCCceecccccccc---CCCCCCcccccc
Q 019539 73 ELLECPVCTNSMYP----PI-HQCHNGHTLCSTCKTRV---HNRCPTCRQELG 117 (339)
Q Consensus 73 ~~l~CpIC~~~l~~----Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~ 117 (339)
+...|+||++.+.. ++ +.| ||.||..|+.++ ...||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPC--GHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTT--SCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCC--CCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45779999999865 44 578 999999999876 368999998764
No 51
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.23 E-value=3.4e-07 Score=67.13 Aligned_cols=44 Identities=27% Similarity=0.659 Sum_probs=37.1
Q ss_pred CeeeecccCccCcccc--eeccCCceecccccccc---CCCCCCccccccc
Q 019539 73 ELLECPVCTNSMYPPI--HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 118 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi--~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 118 (339)
+...|+||++.+..|+ +.| ||.||..|+.++ ...||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C--~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPC--LHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTT--TEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCC--CCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 4567999999999874 577 999999999875 3689999998764
No 52
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.21 E-value=5e-07 Score=66.51 Aligned_cols=48 Identities=21% Similarity=0.546 Sum_probs=37.9
Q ss_pred cCCCCeeeecccCccCcc---cc-eeccCCceecccccccc---CCCCCCccccccc
Q 019539 69 TSVHELLECPVCTNSMYP---PI-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 118 (339)
Q Consensus 69 ~~l~~~l~CpIC~~~l~~---Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 118 (339)
++..+...|+||++.+.. ++ +.| ||.||..|+.++ ...||.||..+..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C--~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPC--MHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTT--SCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCC--CCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 345667889999998863 33 567 999999999876 3689999998753
No 53
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=7.4e-07 Score=66.29 Aligned_cols=45 Identities=33% Similarity=0.751 Sum_probs=38.9
Q ss_pred CCCeeeecccCccCcccc-eeccCCce-eccccccccCCCCCCccccccc
Q 019539 71 VHELLECPVCTNSMYPPI-HQCHNGHT-LCSTCKTRVHNRCPTCRQELGD 118 (339)
Q Consensus 71 l~~~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~~~~CP~Cr~~~~~ 118 (339)
..+...|+||++....++ +.| ||. ||..|..++ ..||.||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pC--gH~~~C~~C~~~~-~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPC--RHTCLCDGCVKYF-QQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTT--TBCCSCTTHHHHC-SSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECC--CChhhhHHHHhcC-CCCCCCCcchhc
Confidence 345778999999999988 589 999 999999875 799999998864
No 54
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.12 E-value=8.8e-07 Score=69.21 Aligned_cols=45 Identities=24% Similarity=0.618 Sum_probs=37.2
Q ss_pred CCCeeeecccCccCcc---cc-eeccCCceecccccccc---CCCCCCcccccc
Q 019539 71 VHELLECPVCTNSMYP---PI-HQCHNGHTLCSTCKTRV---HNRCPTCRQELG 117 (339)
Q Consensus 71 l~~~l~CpIC~~~l~~---Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~ 117 (339)
..+...|+||++.+.. ++ +.| ||.||..|+.+| ...||.||..+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C--~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPC--HHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETT--TEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCC--CChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 4577899999999875 43 577 999999999876 368999999874
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.09 E-value=4.3e-07 Score=74.51 Aligned_cols=45 Identities=33% Similarity=0.957 Sum_probs=38.6
Q ss_pred CCeeeecccCccCccc-------c-eeccCCceecccccccc---CCCCCCccccccc
Q 019539 72 HELLECPVCTNSMYPP-------I-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 118 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~P-------i-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 118 (339)
.+.+.|+||++.+..| + +.| ||+||..|+.++ ...||.||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETT--CCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCC--CChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 4678999999999987 5 678 999999999876 3689999998864
No 56
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.08 E-value=3.6e-07 Score=69.94 Aligned_cols=46 Identities=30% Similarity=0.835 Sum_probs=40.0
Q ss_pred CCCCeeeecccCccCcccc-eeccCCce-eccccccccCCCCCCccccccc
Q 019539 70 SVHELLECPVCTNSMYPPI-HQCHNGHT-LCSTCKTRVHNRCPTCRQELGD 118 (339)
Q Consensus 70 ~l~~~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~~~~CP~Cr~~~~~ 118 (339)
.+.+...|+||++.+..|+ +.| ||. ||..|..++ ..||.||.++..
T Consensus 14 ~l~~~~~C~IC~~~~~~~v~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~~ 61 (79)
T 2yho_A 14 KLKEAMLCMVCCEEEINSTFCPC--GHTVCCESCAAQL-QSCPVCRSRVEH 61 (79)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETT--CBCCBCHHHHTTC-SBCTTTCCBCCE
T ss_pred cCCCCCEeEEeCcccCcEEEECC--CCHHHHHHHHHhc-CcCCCCCchhhC
Confidence 4566778999999999998 578 999 999999987 699999998864
No 57
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.98 E-value=1.5e-06 Score=70.17 Aligned_cols=43 Identities=21% Similarity=0.637 Sum_probs=34.9
Q ss_pred eeeecccCccCcccc-------------------eeccCCceeccccccccC--------CCCCCccccccc
Q 019539 74 LLECPVCTNSMYPPI-------------------HQCHNGHTLCSTCKTRVH--------NRCPTCRQELGD 118 (339)
Q Consensus 74 ~l~CpIC~~~l~~Pi-------------------~qC~~GH~fC~~C~~~~~--------~~CP~Cr~~~~~ 118 (339)
...|+||++.|..|. ..| ||.||..|+.+|. ..||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C--~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKC--SHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSS--CCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCC--CCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 458999999997652 457 9999999998763 479999998764
No 58
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.88 E-value=2.8e-06 Score=82.27 Aligned_cols=46 Identities=28% Similarity=0.795 Sum_probs=40.7
Q ss_pred CCCCeeeecccCccCcccc-eeccCCce-eccccccccCCCCCCccccccc
Q 019539 70 SVHELLECPVCTNSMYPPI-HQCHNGHT-LCSTCKTRVHNRCPTCRQELGD 118 (339)
Q Consensus 70 ~l~~~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~~~~CP~Cr~~~~~ 118 (339)
.+.+.+.|+||++.+..|+ +.| ||. ||..|+.++ ..||.||.++..
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpC--gH~~fC~~C~~~~-~~CP~CR~~i~~ 338 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPC--GHLVVCQECAPSL-RKCPICRGIIKG 338 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETT--CCEEECTTTGGGC-SBCTTTCCBCCE
T ss_pred hCcCCCCCCccCCcCCceEEcCC--CChhHhHHHHhcC-CcCCCCCCCccC
Confidence 4567789999999999998 578 999 999999987 899999998864
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.77 E-value=4.7e-06 Score=61.00 Aligned_cols=45 Identities=27% Similarity=0.665 Sum_probs=37.4
Q ss_pred CCeeeecccCccCcccce---eccCCce-eccccccccC---CCCCCccccccc
Q 019539 72 HELLECPVCTNSMYPPIH---QCHNGHT-LCSTCKTRVH---NRCPTCRQELGD 118 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~Pi~---qC~~GH~-fC~~C~~~~~---~~CP~Cr~~~~~ 118 (339)
.+...|+||++....+++ .| ||. +|..|..++. ..||.||+++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKT--GHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTE--EEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCC--CChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 356679999999999874 68 999 8999998763 469999998753
No 60
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=1.2e-05 Score=61.46 Aligned_cols=43 Identities=28% Similarity=0.723 Sum_probs=34.5
Q ss_pred CeeeecccCccCccc--------------c-e-eccCCceeccccccccC---CCCCCcccccc
Q 019539 73 ELLECPVCTNSMYPP--------------I-H-QCHNGHTLCSTCKTRVH---NRCPTCRQELG 117 (339)
Q Consensus 73 ~~l~CpIC~~~l~~P--------------i-~-qC~~GH~fC~~C~~~~~---~~CP~Cr~~~~ 117 (339)
+.-.|+||++.+..+ + + .| ||.|+..|+.++. ..||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C--~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGEC--NHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETT--SCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCC--CCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 456699999999763 2 3 37 9999999999863 68999999875
No 61
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.72 E-value=7.6e-06 Score=80.21 Aligned_cols=45 Identities=29% Similarity=0.736 Sum_probs=38.4
Q ss_pred CCeeeecccCccCcccc-eeccCCceecccccccc----CCCCCCccccccc
Q 019539 72 HELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRV----HNRCPTCRQELGD 118 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~ 118 (339)
.....|+||.+.+..|+ ..| ||.||..|+.++ ...||.||.++..
T Consensus 330 ~~~~~C~ICle~~~~pv~lpC--GH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEPC--GHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEETT--CCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCCccCcCCCCeEEeCC--CChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34478999999999997 788 999999999765 3689999998764
No 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.70 E-value=5.8e-06 Score=67.67 Aligned_cols=46 Identities=33% Similarity=0.912 Sum_probs=38.3
Q ss_pred CCCeeeecccCccCccc-------c-eeccCCceecccccccc---CCCCCCccccccc
Q 019539 71 VHELLECPVCTNSMYPP-------I-HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 118 (339)
Q Consensus 71 l~~~l~CpIC~~~l~~P-------i-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 118 (339)
..+.+.|+||++.+..| + ..| ||.||..|+.++ ...||+||.++..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETT--SBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCC--CChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 45678899999999876 3 456 999999999876 4789999998864
No 63
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.69 E-value=5.5e-06 Score=60.46 Aligned_cols=44 Identities=27% Similarity=0.646 Sum_probs=36.5
Q ss_pred CeeeecccCccCcccc-e--eccCCce-eccccccccC---CCCCCccccccc
Q 019539 73 ELLECPVCTNSMYPPI-H--QCHNGHT-LCSTCKTRVH---NRCPTCRQELGD 118 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi-~--qC~~GH~-fC~~C~~~~~---~~CP~Cr~~~~~ 118 (339)
....|+||++...+++ + .| ||. +|..|..++. ..||.||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRT--GHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTE--EEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCC--CCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3457999999999886 4 78 998 9999998763 489999998753
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.61 E-value=9.5e-06 Score=63.50 Aligned_cols=41 Identities=22% Similarity=0.591 Sum_probs=33.3
Q ss_pred CeeeecccCccCcccc-e---eccCCceeccccccccC-----------CCCCC--cccc
Q 019539 73 ELLECPVCTNSMYPPI-H---QCHNGHTLCSTCKTRVH-----------NRCPT--CRQE 115 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi-~---qC~~GH~fC~~C~~~~~-----------~~CP~--Cr~~ 115 (339)
+.+.|+||++.+..|. + .| ||.||..|+.+.. ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~C--gH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQC--QCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTT--TEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCC--CCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 5788999999999886 3 48 9999999987531 36998 9887
No 65
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=7.8e-05 Score=59.46 Aligned_cols=45 Identities=20% Similarity=0.459 Sum_probs=22.0
Q ss_pred CCCccCcCcHHHHHhhCCCCCccCCCCCCCCccccChhHHHHHhh
Q 019539 142 CPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAHLR 186 (339)
Q Consensus 142 C~~~~~~~~~~~He~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~ 186 (339)
|...+...++++|...|+...+.|++...+|.+++.+.+|.+|++
T Consensus 44 Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~ 88 (100)
T 2yre_A 44 CGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLE 88 (100)
T ss_dssp CSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHH
T ss_pred cCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHh
Confidence 444444444445544455555555444444555544445555544
No 66
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=97.36 E-value=9.6e-05 Score=55.38 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=46.1
Q ss_pred ccccCCCCCCCCCCccCcCcHHHHHh-hCCCCCccCCCCCCCCccccChhHHHHHhhhcCCC
Q 019539 131 LELPCKYYHLGCPEIFPYYSKLKHEV-MCTFRPYNCPYAGSDCSVVGDIPYLVAHLRDDHKV 191 (339)
Q Consensus 131 l~v~C~~~~~GC~~~~~~~~~~~He~-~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~ 191 (339)
..+.|++ ||...+...++.+|++ +|+++++.|++ |++...+.+|..|. .....
T Consensus 15 ~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~----C~~~~~~~~l~~H~-~~Cp~ 68 (76)
T 2yuc_A 15 NVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF----CGCDFSGEAYESHE-GMCPQ 68 (76)
T ss_dssp SCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS----SCCCCCHHHHHHTT-TSCTT
T ss_pred cccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC----CCCccCHHHHHHHH-hHCCC
Confidence 4678876 7999999999999997 99999999998 99999999999998 44443
No 67
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.0001 Score=58.74 Aligned_cols=57 Identities=25% Similarity=0.466 Sum_probs=43.5
Q ss_pred CCC-CcccccccchhhHHHH--HhhhccccCCCCCCCCCCccCcCcHHHHHhhCCCCCccCC
Q 019539 108 RCP-TCRQELGDIRCLALEK--VAESLELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCP 166 (339)
Q Consensus 108 ~CP-~Cr~~~~~~r~~alek--~l~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~f~p~~CP 166 (339)
.|| .|...+ .|...-|. +.-..+++|+|+.+||+.++...++.+||+.|+-..+.|.
T Consensus 39 ~CP~~Cga~i--~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas~v~~~ 98 (100)
T 2yre_A 39 GCPLVCGAVF--HSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVSGPS 98 (100)
T ss_dssp ECTTCCSCEE--EHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGGCCCCC
T ss_pred eCCcccCCee--ehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhhCCceeEecC
Confidence 588 686633 34333232 3445778999999999999999999999999998888774
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.23 E-value=6.5e-05 Score=54.59 Aligned_cols=45 Identities=9% Similarity=0.103 Sum_probs=36.6
Q ss_pred eeeecccCccCcccceeccCCceeccccccccC---CCCCCccccccc
Q 019539 74 LLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVH---NRCPTCRQELGD 118 (339)
Q Consensus 74 ~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~---~~CP~Cr~~~~~ 118 (339)
.|.|||++++|.+|+..=.+||+|++.|+.++. ..||..++++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 478999999999998531239999999999873 579999998753
No 69
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.07 E-value=0.00015 Score=58.44 Aligned_cols=44 Identities=23% Similarity=0.520 Sum_probs=35.1
Q ss_pred CeeeecccCccCccc-----------------c--eeccCCceecccccccc---CCCCCCccccccc
Q 019539 73 ELLECPVCTNSMYPP-----------------I--HQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 118 (339)
Q Consensus 73 ~~l~CpIC~~~l~~P-----------------i--~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 118 (339)
+.-.|+||++.+..+ + ..| ||.|+..|+.++ ...||+||.++..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C--~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC--NHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETT--SCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeeccc--CcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 345699999998865 2 356 999999999986 3689999998653
No 70
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.82 E-value=0.00019 Score=59.06 Aligned_cols=42 Identities=24% Similarity=0.575 Sum_probs=0.4
Q ss_pred eeeecccCccCccc-----------------c--eeccCCceeccccccccC---CCCCCcccccc
Q 019539 74 LLECPVCTNSMYPP-----------------I--HQCHNGHTLCSTCKTRVH---NRCPTCRQELG 117 (339)
Q Consensus 74 ~l~CpIC~~~l~~P-----------------i--~qC~~GH~fC~~C~~~~~---~~CP~Cr~~~~ 117 (339)
.-.|+||++.+..+ + ..| ||.|+..|+.++. ..||+||.++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C--~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC--NHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C-----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCc--CceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 34799999999764 2 256 9999999999873 67999999864
No 71
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.68 E-value=0.00065 Score=58.46 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=43.5
Q ss_pred ccccCCCCCCCCCCccCcCcHHHHH-hhCCCCCccCCCCCCCCccccChhHHHHHhhh
Q 019539 131 LELPCKYYHLGCPEIFPYYSKLKHE-VMCTFRPYNCPYAGSDCSVVGDIPYLVAHLRD 187 (339)
Q Consensus 131 l~v~C~~~~~GC~~~~~~~~~~~He-~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~ 187 (339)
..++|+ ||.+.+...++..|+ ..|++++..|++ |+......+|..|...
T Consensus 109 ~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~~~C~~----C~~~~~~~~l~~H~~~ 158 (170)
T 3hcs_A 109 ALMDCP----QCQRPFQKFHINIHILKDCPRRQVSCDN----CAASMAFEDKEIHDQN 158 (170)
T ss_dssp SEEECT----TTCCEEEGGGHHHHHHHTCTTCEEECTT----TCCEEEGGGHHHHHTT
T ss_pred eeeECC----CCChHHHHHHHHHHhhhhCCCCCeECCC----CCCccCHHHHHhHHHh
Confidence 456776 799999999999999 699999999996 9999999999999854
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.61 E-value=0.00046 Score=54.94 Aligned_cols=78 Identities=21% Similarity=0.396 Sum_probs=53.0
Q ss_pred eecccCccCccc--ceeccCCceecccccccc----CCCCCCcccccccchhhHHHHHhhhccccCCCCCCCCCCccCcC
Q 019539 76 ECPVCTNSMYPP--IHQCHNGHTLCSTCKTRV----HNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGCPEIFPYY 149 (339)
Q Consensus 76 ~CpIC~~~l~~P--i~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~~r~~alek~l~~l~v~C~~~~~GC~~~~~~~ 149 (339)
-|++|..++..- +..| .|.||.+|...+ .+.||.|+.++..+....+ + -.+-|+-
T Consensus 3 fC~~C~~Pi~iygRmIPC--kHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~----~-~if~C~~------------ 63 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPC--KHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTR----G-SLFMCSI------------ 63 (101)
T ss_dssp BCTTTCSBCSEEEEEETT--CCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEG----G-GCCCCCC------------
T ss_pred ecCccCCCeEEEeeeccc--cccHHHHHHHHHHhccCCCCcCcCCeeeeeEEecc----C-CEEECCC------------
Confidence 489999998854 3689 999999999653 2689999999875432211 1 1233331
Q ss_pred cHHHHHhhCCCCCccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 019539 150 SKLKHEVMCTFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKV 191 (339)
Q Consensus 150 ~~~~He~~C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 191 (339)
.. +|.... +..+|..|....|..
T Consensus 64 -----------------~~--~CkrtyLs~rdlqaHI~~~H~~ 87 (101)
T 3vk6_A 64 -----------------VQ--GCKRTYLSQRDLQAHINHRHMR 87 (101)
T ss_dssp -----------------CC--CCCCCCSSHHHHHHHHHHHTTT
T ss_pred -----------------CC--CHHHHhcCHHHHHHHHHHHhhh
Confidence 22 254433 667999999999976
No 73
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.12 E-value=0.00063 Score=50.72 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=42.2
Q ss_pred ccccCCCCCCCCCCccCcCcHHHHHhhCCCCCccCCCCCCCCccccChhHHHHHhhh
Q 019539 131 LELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAHLRD 187 (339)
Q Consensus 131 l~v~C~~~~~GC~~~~~~~~~~~He~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~ 187 (339)
..+.|++ |...+...++..|+..|+.+|+.|+. |+....+.+|..|++.
T Consensus 16 r~~~C~~----C~~~~~~~~L~~H~~~c~~~~~~C~~----C~~~~~~~~l~~H~~~ 64 (75)
T 2d9k_A 16 RLAVCQH----CDLELSILKLKEHEDYCGARTELCGN----CGRNVLVKDLKTHPEV 64 (75)
T ss_dssp CCEECSS----SCCEECHHHHHHHHHHHHHCEEECSS----SCCEEETTGGGTHHHH
T ss_pred cccCCcc----cChHhhHHHHHHHHhHcCCCceEccc----CCCcCcHHHHHHHHHH
Confidence 3566765 88899999999999999999999996 8888888999999875
No 74
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=95.34 E-value=0.0026 Score=47.35 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=36.7
Q ss_pred cCcHHHHHhhCCCCCccCCCCCCCCccccChhHHHHHhhhcCCCCc
Q 019539 148 YYSKLKHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAHLRDDHKVDM 193 (339)
Q Consensus 148 ~~~~~~He~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~~ 193 (339)
..+++.|++.|+|+++.||. .|+....+.+|..|+........
T Consensus 2 ~~~l~~H~~~C~~~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~ 44 (76)
T 2yuc_A 2 SSGSSGHLNTCSFNVIPCPN---RCPMKLSRRDLPAHLQHDCPKRR 44 (76)
T ss_dssp CCSCSCCCCCCCCSCCBCTT---CCSCBCCSSSSTTTTTTSCTTSC
T ss_pred chHHHHHHHHCCCcccCCCc---cccHHhhHhHHHhhCHhhCCCcc
Confidence 35678999999999999996 39999999999999987776643
No 75
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.16 E-value=0.013 Score=44.54 Aligned_cols=46 Identities=22% Similarity=0.457 Sum_probs=34.9
Q ss_pred CCeeeecccCccCc--ccc-eeccC---CceeccccccccC-----CCCCCcccccc
Q 019539 72 HELLECPVCTNSMY--PPI-HQCHN---GHTLCSTCKTRVH-----NRCPTCRQELG 117 (339)
Q Consensus 72 ~~~l~CpIC~~~l~--~Pi-~qC~~---GH~fC~~C~~~~~-----~~CP~Cr~~~~ 117 (339)
.+...|.||++-+. .++ ..|.+ +|.|-..|+.+|. ..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 44567999998764 444 56743 3999999999873 47999999875
No 76
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.18 E-value=0.028 Score=42.20 Aligned_cols=45 Identities=20% Similarity=0.579 Sum_probs=34.0
Q ss_pred CCeeeecccCccCcccceec-cCCceeccccccccC-----CCCCCcccccc
Q 019539 72 HELLECPVCTNSMYPPIHQC-HNGHTLCSTCKTRVH-----NRCPTCRQELG 117 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~Pi~qC-~~GH~fC~~C~~~~~-----~~CP~Cr~~~~ 117 (339)
+..-.|.||++++.+- ..| .++|.|=..|+.++. ..||.||.++.
T Consensus 13 ~~i~~C~IC~~~i~~g-~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSS-EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccC-CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3456799999999853 334 238999999998762 57999999875
No 77
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=93.75 E-value=0.017 Score=55.72 Aligned_cols=47 Identities=23% Similarity=0.562 Sum_probs=37.3
Q ss_pred CCCeeeecccCccCcc----cceecc---CCceeccccccccC--------------CCCCCcccccc
Q 019539 71 VHELLECPVCTNSMYP----PIHQCH---NGHTLCSTCKTRVH--------------NRCPTCRQELG 117 (339)
Q Consensus 71 l~~~l~CpIC~~~l~~----Pi~qC~---~GH~fC~~C~~~~~--------------~~CP~Cr~~~~ 117 (339)
.+..-+|+||+.++.+ |...|. +||.|=+.|+.+|. +.||.||.++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3567789999999886 655553 49999999998762 46999999875
No 78
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.71 E-value=0.27 Score=37.49 Aligned_cols=32 Identities=25% Similarity=0.649 Sum_probs=27.1
Q ss_pred CCeeeecccCccCcccc-eeccC--Cceecccccc
Q 019539 72 HELLECPVCTNSMYPPI-HQCHN--GHTLCSTCKT 103 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~Pi-~qC~~--GH~fC~~C~~ 103 (339)
...|.|.+|.+-|.+-- .||+. +|.||-.|-.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr 47 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR 47 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccH
Confidence 45788999999999875 79985 7999999964
No 79
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=91.16 E-value=0.28 Score=36.36 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=33.8
Q ss_pred cccCCCCCCCCCCccCcC-cHHHHHhhCCC---CCccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 019539 132 ELPCKYYHLGCPEIFPYY-SKLKHEVMCTF---RPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKV 191 (339)
Q Consensus 132 ~v~C~~~~~GC~~~~~~~-~~~~He~~C~f---~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 191 (339)
.+.|+. |...+... .+..|+..-.- +++.|+. |+... ....|..|++..|..
T Consensus 35 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~ 91 (95)
T 2yt9_A 35 PYSCPV----CGLRFKRKDRMSYHVRSHDGSVGKPYICQS----CGKGFSRPDHLNGHIKQVHSG 91 (95)
T ss_dssp SEECSS----SCCEESCHHHHHHHHHHHCCCCCSSBCCSS----SCCCBSSHHHHHHHHHHTSCC
T ss_pred CCcCCC----CCCccCCHHHHHHHHHHhcCCCCCceECCC----ccchhCCHHHHHHHHHHhcCC
Confidence 345554 55554433 35566654332 6889986 77765 457999999988865
No 80
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=90.92 E-value=0.13 Score=41.17 Aligned_cols=63 Identities=16% Similarity=0.080 Sum_probs=41.1
Q ss_pred HHHHhhhccccCCCCCCCCCCccCcCcHH---HHHhhCCCCCccCCCCCCCCccccChhHHHHHhhhcCCCC
Q 019539 124 LEKVAESLELPCKYYHLGCPEIFPYYSKL---KHEVMCTFRPYNCPYAGSDCSVVGDIPYLVAHLRDDHKVD 192 (339)
Q Consensus 124 lek~l~~l~v~C~~~~~GC~~~~~~~~~~---~He~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~ 192 (339)
+++.+..-...||. |...+...++. .=++.=.-..+.||+.| |+|++.+.+|..|++..+...
T Consensus 45 i~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~g--C~~~~~~~~l~~H~~~c~~~~ 110 (118)
T 3hct_A 45 IIKSIRDAGHKCPV----DNEILLENQLFPDNFAKREILSLMVKCPNEG--CLHKMELRHLEDHQAHCEFAL 110 (118)
T ss_dssp HHHHHHHHCSBCTT----TCCBCCGGGCEECHHHHHHHHTSEEECSSTT--CCCEEEGGGSGGGTSSSCC--
T ss_pred HHHHHhhCCCCCCC----CCCCcCHHhcccCHHHHHHHccceeECCCCC--CCCEEeeHHHHHHHHHchhhh
Confidence 55555555558987 87776654321 01122223678999865 999999999999998877653
No 81
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.59 E-value=0.17 Score=35.51 Aligned_cols=51 Identities=31% Similarity=0.662 Sum_probs=34.6
Q ss_pred cccCCCCCCCCCCccCcCcHHHHHhhCCCCCccCC-CCCCCCcccc-ChhHHHHHhhhcCC
Q 019539 132 ELPCKYYHLGCPEIFPYYSKLKHEVMCTFRPYNCP-YAGSDCSVVG-DIPYLVAHLRDDHK 190 (339)
Q Consensus 132 ~v~C~~~~~GC~~~~~~~~~~~He~~C~f~p~~CP-~~g~~C~~~g-~~~~L~~Hl~~~H~ 190 (339)
.+.|.. |...+....+..|+..+.-+|+.|+ . |+... .+..|..|++....
T Consensus 10 ~~~C~~----C~k~f~~~~L~~H~~~~~~~p~~C~~~----C~k~f~~~~~L~~H~~~hc~ 62 (66)
T 2eod_A 10 TQPCTY----CTKEFVFDTIQSHQYQCPRLPVACPNQ----CGVGTVAREDLPGHLKDSCN 62 (66)
T ss_dssp EEECSS----SCCEEEHHHHHHHHHHCSSSEEECTTC----CSCCEEETTTHHHHHHTTSS
T ss_pred Ceeccc----cCCccCHHHHHHHHHHcCCcCccCCcc----cCcccccHHHHHHHHHhhcc
Confidence 345554 6666665567788877778888888 5 76653 45688888875443
No 82
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=89.49 E-value=0.36 Score=38.30 Aligned_cols=75 Identities=15% Similarity=0.254 Sum_probs=47.5
Q ss_pred CCCCCccccccc---chh------hHHHHHhhhccccCCCCCCCCCCccCcCcHH----HHHhhCCCCCccCCCCCCCCc
Q 019539 107 NRCPTCRQELGD---IRC------LALEKVAESLELPCKYYHLGCPEIFPYYSKL----KHEVMCTFRPYNCPYAGSDCS 173 (339)
Q Consensus 107 ~~CP~Cr~~~~~---~r~------~alek~l~~l~v~C~~~~~GC~~~~~~~~~~----~He~~C~f~p~~CP~~g~~C~ 173 (339)
..||+|...+.. .++ .-+++.+......||. |...+...++. .-++.=.-..+.||+.| |+
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~g--C~ 97 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPS----CRYPCFPTDLESPVKSFLNILNSLMVKCPAQD--CN 97 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTT----TCCBCCGGGCBCCCHHHHHHHHHCEEECCSTT--CC
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCC----CCCCCCHhhccccHHHHHHHHHHhcCCCCCCC--Cc
Confidence 357777766542 111 2356666555667887 87776654421 11222233567899865 99
Q ss_pred cccChhHHHHHhhh
Q 019539 174 VVGDIPYLVAHLRD 187 (339)
Q Consensus 174 ~~g~~~~L~~Hl~~ 187 (339)
|.+.+.++..|+..
T Consensus 98 ~~~~~~~~~~H~~~ 111 (116)
T 1rmd_A 98 EEVSLEKYNHHVSS 111 (116)
T ss_dssp CEEEHHHHHHHHHT
T ss_pred chhhHhHHHHHHHH
Confidence 99999999999974
No 83
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=88.91 E-value=0.69 Score=35.25 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=28.8
Q ss_pred CCCccCcC-cHHHHHhhCCCCCccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 019539 142 CPEIFPYY-SKLKHEVMCTFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKV 191 (339)
Q Consensus 142 C~~~~~~~-~~~~He~~C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 191 (339)
|...+... .+..|+.--.-+++.|+. |+... ....|..|++..|..
T Consensus 48 C~~~f~~~~~l~~H~~H~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~ 95 (107)
T 1wjp_A 48 CSLRFFSPELKQEHESKCEYKKLTCLE----CMRTFKSSFSIWRHQVEVHNQ 95 (107)
T ss_dssp TCCCBSSHHHHHHHHHHCSTGGGEEGG----GTEECSSHHHHHHHHHHTSCC
T ss_pred CCCccCCHHHHHHHHHcCCCCCccCcc----ccchhCCHHHHHHHHHHHcCC
Confidence 44443332 344555433446788986 77766 457999999877765
No 84
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=88.30 E-value=0.12 Score=40.18 Aligned_cols=32 Identities=19% Similarity=0.549 Sum_probs=24.8
Q ss_pred CeeeecccCc-cCcccceecc-CCceeccccccc
Q 019539 73 ELLECPVCTN-SMYPPIHQCH-NGHTLCSTCKTR 104 (339)
Q Consensus 73 ~~l~CpIC~~-~l~~Pi~qC~-~GH~fC~~C~~~ 104 (339)
+.+.|++|.+ ++.+|+..|. +||.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 4578999996 5788884332 299999999986
No 85
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.07 E-value=0.19 Score=36.90 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=29.3
Q ss_pred CcHHHHHh-hCCCCCccCCCCCCCCccccChhHHHHHh
Q 019539 149 YSKLKHEV-MCTFRPYNCPYAGSDCSVVGDIPYLVAHL 185 (339)
Q Consensus 149 ~~~~~He~-~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl 185 (339)
.++..|+. .|+++|+.|++ |+......+|..|.
T Consensus 3 ~~L~~H~~~~c~~r~~~C~~----C~~~~~~~~L~~H~ 36 (75)
T 2d9k_A 3 SGSSGHEETECPLRLAVCQH----CDLELSILKLKEHE 36 (75)
T ss_dssp CCCSCCCCCCCCCCCEECSS----SCCEECHHHHHHHH
T ss_pred hHHHhhCcccCCCcccCCcc----cChHhhHHHHHHHH
Confidence 46788985 89999999997 98888999999998
No 86
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=85.95 E-value=1.3 Score=34.12 Aligned_cols=106 Identities=22% Similarity=0.322 Sum_probs=66.7
Q ss_pred CeeeecccCccCcccc-eeccCCceeccccccccCCCCCCcccccccchhhHHHHH-----hhhccccCCCCCCCCCCcc
Q 019539 73 ELLECPVCTNSMYPPI-HQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKV-----AESLELPCKYYHLGCPEIF 146 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~~~CP~Cr~~~~~~r~~alek~-----l~~l~v~C~~~~~GC~~~~ 146 (339)
..+.|++|...|.... ++ -|.- .-.......|+.|...+.....+..-.. .....+.|+. |...+
T Consensus 6 ~~~~C~~C~~~f~~~~~l~---~H~~--~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f 76 (124)
T 2dlq_A 6 SGVECPTCHKKFLSKYYLK---VHNR--KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETF 76 (124)
T ss_dssp SSCCCTTTCCCCSSHHHHH---HHHH--HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEE
T ss_pred CCCCCCCCCCcCCCHHHHH---HHHH--hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCcc
Confidence 4588999999988653 21 1211 0001112579999887765443322211 1234567876 88876
Q ss_pred CcC-cHHHHHhh-CCCCCccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 019539 147 PYY-SKLKHEVM-CTFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKV 191 (339)
Q Consensus 147 ~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 191 (339)
... .+..|+.. -.-+|+.|+. |+... ....|..|++..|..
T Consensus 77 ~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~H~~ 120 (124)
T 2dlq_A 77 RRRMELRLHMVSHTGEMPYKCSS----CSQQFMQKKDLQSHMIKLHSG 120 (124)
T ss_dssp SSHHHHHHHHHHHSSSCSEECSS----SCCEESSHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHcCCCCCccCCC----ccchhCCHHHHHHHHHHHCCC
Confidence 654 46788754 3457899986 87766 457999999988875
No 87
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=84.07 E-value=2.7 Score=31.52 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=19.6
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKV 191 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 191 (339)
+++.|+. |+... ....|..|++..+..
T Consensus 72 ~~~~C~~----C~~~f~~~~~L~~H~~~H~~~ 99 (106)
T 2ee8_A 72 KPFKCQE----CGKGFCQSRTLAVHKTLHMQT 99 (106)
T ss_dssp CTTSCSS----SCCCCSSHHHHHHHHHHTTSC
T ss_pred CCeECCC----cCCcccCHHHHHHHHHHhCCC
Confidence 5788886 77665 457999998765544
No 88
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=83.30 E-value=0.94 Score=33.43 Aligned_cols=46 Identities=26% Similarity=0.392 Sum_probs=28.6
Q ss_pred CCCccCcC-cHHHHHhhC-CCCCccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 019539 142 CPEIFPYY-SKLKHEVMC-TFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKV 191 (339)
Q Consensus 142 C~~~~~~~-~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 191 (339)
|...+... .+..|+..- .-+++.|+. |+... ....|..|++..|..
T Consensus 42 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~ 90 (96)
T 2dmd_A 42 CDYAAADSSSLNKHLRIHSDERPFKCQI----CPYASRNSSQLTVHLRSHTGD 90 (96)
T ss_dssp SCCEESSHHHHHHHHHHSCCCCCEECSS----SSCEESSHHHHHHHHTTCCSC
T ss_pred CCCccCCHHHHHHHHHHhCCCCCccCCC----CCCccCCHHHHHHHHHHhcCC
Confidence 54444332 344555432 335789986 77765 467999999876654
No 89
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=82.85 E-value=2.7 Score=32.23 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=51.3
Q ss_pred CCCCCcccccccchhhH--HHHHhhhccccCCCCCCCCCCccCc-CcHHHHHhh----CCCCCccCCCCCCCCcccc-Ch
Q 019539 107 NRCPTCRQELGDIRCLA--LEKVAESLELPCKYYHLGCPEIFPY-YSKLKHEVM----CTFRPYNCPYAGSDCSVVG-DI 178 (339)
Q Consensus 107 ~~CP~Cr~~~~~~r~~a--lek~l~~l~v~C~~~~~GC~~~~~~-~~~~~He~~----C~f~p~~CP~~g~~C~~~g-~~ 178 (339)
..|+.|...+.....+. +..-...-.+.|+. |...+.. ..+..|+.. =.-.++.|+. |+... ..
T Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f~~~ 79 (124)
T 2dlq_A 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPK----CGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETFRRR 79 (124)
T ss_dssp CCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTT----TCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEESSH
T ss_pred CCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCC----CCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCccCCH
Confidence 47999988876543332 22223345677876 8877654 457789864 3456789986 87765 45
Q ss_pred hHHHHHhhhcCCC
Q 019539 179 PYLVAHLRDDHKV 191 (339)
Q Consensus 179 ~~L~~Hl~~~H~~ 191 (339)
..|..|++..+..
T Consensus 80 ~~l~~H~~~h~~~ 92 (124)
T 2dlq_A 80 MELRLHMVSHTGE 92 (124)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHcCCC
Confidence 7899999876654
No 90
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=80.89 E-value=0.52 Score=39.22 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=22.3
Q ss_pred CCCccCCCCCCCCccccChhHHHH-Hhhhc
Q 019539 160 FRPYNCPYAGSDCSVVGDIPYLVA-HLRDD 188 (339)
Q Consensus 160 f~p~~CP~~g~~C~~~g~~~~L~~-Hl~~~ 188 (339)
-..+.||+.| |+|++.+.++.. |+..-
T Consensus 102 ~L~v~Cpn~G--C~~~~~l~~l~~~H~~~~ 129 (141)
T 3knv_A 102 SLPAVCPSDG--CTWKGTLKEYESCHEGRC 129 (141)
T ss_dssp TSEEECCSTT--CCCEEEHHHHHHHTTTCC
T ss_pred ccccccCCCC--CCCEeEHHHHHHHHHHHh
Confidence 4677999865 999999999998 87653
No 91
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=80.44 E-value=2.2 Score=30.13 Aligned_cols=73 Identities=23% Similarity=0.489 Sum_probs=43.5
Q ss_pred CCCCcccccccchhhH--HHHHhhhccccCCCCCCCCCCccCcC-cHHHHHhh-CCCCCccCCCCCCCCcccc-ChhHHH
Q 019539 108 RCPTCRQELGDIRCLA--LEKVAESLELPCKYYHLGCPEIFPYY-SKLKHEVM-CTFRPYNCPYAGSDCSVVG-DIPYLV 182 (339)
Q Consensus 108 ~CP~Cr~~~~~~r~~a--lek~l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~ 182 (339)
.|+.|...+.....+. +......-.+.|+. |...+... .+..|+.. -.-+++.|+. |+... ....|.
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~ 74 (82)
T 2kmk_A 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQY----CGKRFHQKSDMKKHTFIHTGEKPHKCQV----CGKAFSQSSNLI 74 (82)
T ss_dssp ECSSSCCEESSHHHHHHHHHHHHTCCCEECSS----SCCEESSHHHHHHHHHHHHTCCCEECTT----TSCEESSHHHHH
T ss_pred cCCCCcccccCchhHHHHHHHcCCCCCeeCCc----CChhhCCHHHHHHHHHHhcCCCCCcCCC----cchhhCChHHHH
Confidence 4777777665433222 22223344566765 77666543 45667642 2346889986 77765 457899
Q ss_pred HHhhhc
Q 019539 183 AHLRDD 188 (339)
Q Consensus 183 ~Hl~~~ 188 (339)
.|++..
T Consensus 75 ~H~~~H 80 (82)
T 2kmk_A 75 THSRKH 80 (82)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998754
No 92
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=76.63 E-value=0.71 Score=36.32 Aligned_cols=38 Identities=37% Similarity=0.931 Sum_probs=29.1
Q ss_pred eeecccCccCcccceeccCCceecccccccc--CCCCCCcccccc
Q 019539 75 LECPVCTNSMYPPIHQCHNGHTLCSTCKTRV--HNRCPTCRQELG 117 (339)
Q Consensus 75 l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~--~~~CP~Cr~~~~ 117 (339)
..||+|...|.. ..|+..|..|-... ...||.|.+++.
T Consensus 33 ~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCccee-----cCCEEECccccchhhccccCcchhhHHH
Confidence 789999998874 13666699997754 367999999875
No 93
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=76.13 E-value=3.4 Score=29.21 Aligned_cols=77 Identities=23% Similarity=0.437 Sum_probs=45.3
Q ss_pred CC--CCcccccccchhhH--HHHHhhhccccCCCCCCCCCCccCcC-cHHHHHhhCCCCCccCCCCCCCCcccc-ChhHH
Q 019539 108 RC--PTCRQELGDIRCLA--LEKVAESLELPCKYYHLGCPEIFPYY-SKLKHEVMCTFRPYNCPYAGSDCSVVG-DIPYL 181 (339)
Q Consensus 108 ~C--P~Cr~~~~~~r~~a--lek~l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C~f~p~~CP~~g~~C~~~g-~~~~L 181 (339)
.| +.|...+.....+. +..-.....+.|+. .||...+... .+..|+..-.- +.|+..+ .|+... ....|
T Consensus 3 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~-~C~~~f~~~~~l 77 (85)
T 2j7j_A 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH--EGCDKRFSLPSRLKRHEKVHAG--YPCKKDD-SCSFVGKTWTLY 77 (85)
T ss_dssp ECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCS--TTCCCEESSHHHHHHHHHHHHS--EECCSCS-SCCCEESSHHHH
T ss_pred cCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCC--CCCcCccCCHHHHHHHHHHhCC--CCCCCCC-CCCCccCCHHHH
Confidence 47 77877665433322 22233345567764 4788776554 45677653222 7787532 377766 45689
Q ss_pred HHHhhhcC
Q 019539 182 VAHLRDDH 189 (339)
Q Consensus 182 ~~Hl~~~H 189 (339)
..|++..|
T Consensus 78 ~~H~~~hh 85 (85)
T 2j7j_A 78 LKHVAECH 85 (85)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhcC
Confidence 99988665
No 94
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=76.05 E-value=1.3 Score=33.82 Aligned_cols=46 Identities=20% Similarity=0.565 Sum_probs=36.2
Q ss_pred CCeeeecccCccCcccceeccCCceecccccccc-CCCCCCcccccc
Q 019539 72 HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV-HNRCPTCRQELG 117 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~-~~~CP~Cr~~~~ 117 (339)
.+=|.|..|...|....+.=.+|.++|..|..+. ..+|..|.++|.
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 3558899999999765444456999999998875 478999998875
No 95
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.06 E-value=3.7 Score=31.26 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=25.6
Q ss_pred cHHHHHhh-CCCCCccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 019539 150 SKLKHEVM-CTFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKV 191 (339)
Q Consensus 150 ~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 191 (339)
.+..|+.. -.-+|+.|+. |+... ....|..|++..|..
T Consensus 67 ~l~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~hh~~ 106 (115)
T 2dmi_A 67 SLLEMEGKEDAQKVLKCMY----CGHSFESLQDLSVHMIKTKHY 106 (115)
T ss_dssp CCCCCCCSCCCCSSCBCSS----SCCBCSSHHHHHHHHHHTTTT
T ss_pred HHHHHhhccCCCcceECCC----CCCccCCHHHHHHHHHHhCCc
Confidence 34445432 2246889986 77765 457999999988765
No 96
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=73.79 E-value=7.9 Score=30.84 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=7.4
Q ss_pred eeeecccCccCcc
Q 019539 74 LLECPVCTNSMYP 86 (339)
Q Consensus 74 ~l~CpIC~~~l~~ 86 (339)
.+.|++|...|..
T Consensus 3 ~~~C~~C~~~f~~ 15 (155)
T 2gli_A 3 DCRWDGCSQEFDS 15 (155)
T ss_dssp BCCBTTCCCBCSC
T ss_pred cCCcCCCccccCC
Confidence 3456666666654
No 97
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=72.92 E-value=1.6 Score=30.90 Aligned_cols=46 Identities=13% Similarity=0.395 Sum_probs=30.9
Q ss_pred CCeeeecccCccCcccc-eeccCCc---eecccccccc-----CCCCCCcccccc
Q 019539 72 HELLECPVCTNSMYPPI-HQCHNGH---TLCSTCKTRV-----HNRCPTCRQELG 117 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~Pi-~qC~~GH---~fC~~C~~~~-----~~~CP~Cr~~~~ 117 (339)
++.-.|.||++-...|. ..|.+.+ .|=..|+.+| ...||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45567999998765554 5675433 4545677766 257999998764
No 98
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=69.90 E-value=3.7 Score=33.25 Aligned_cols=77 Identities=25% Similarity=0.576 Sum_probs=45.2
Q ss_pred CCCCcccccccchhhH--HHHHhhhccccCCCCCCCCCCccCcC-cHHHHHhhC-CCCCccCCCCCCCCcccc-ChhHHH
Q 019539 108 RCPTCRQELGDIRCLA--LEKVAESLELPCKYYHLGCPEIFPYY-SKLKHEVMC-TFRPYNCPYAGSDCSVVG-DIPYLV 182 (339)
Q Consensus 108 ~CP~Cr~~~~~~r~~a--lek~l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~L~ 182 (339)
.|+.|...+.....+. +..-...-.+.|+. |...+... .+..|+..= .-+|+.|+. |+... ....|.
T Consensus 24 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~ 95 (133)
T 2lt7_A 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRY----CEKVFPLAEYRTKHEIHHTGERRYQCLA----CGKSFINYQFMS 95 (133)
T ss_dssp EETTTCCEESCHHHHHHHHHHHHCCSCEECSS----SSCEESSHHHHHHHHHHHHTCCCEEESS----SCCEESSHHHHH
T ss_pred ECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCc----cCeecccccchhhhccccCCCccccCCC----CCCCcCCHHHHH
Confidence 4666666554433222 11112233456665 77665554 455676532 236889986 77765 467999
Q ss_pred HHhhhcCCCC
Q 019539 183 AHLRDDHKVD 192 (339)
Q Consensus 183 ~Hl~~~H~~~ 192 (339)
.|++..|...
T Consensus 96 ~H~~~hh~~~ 105 (133)
T 2lt7_A 96 SHIKSVHSQD 105 (133)
T ss_dssp HHHHHHTCCC
T ss_pred HHhHHhcCCC
Confidence 9999988653
No 99
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=69.41 E-value=5.4 Score=30.03 Aligned_cols=53 Identities=19% Similarity=0.306 Sum_probs=34.9
Q ss_pred ccccCCCCCCCCCCccCcC-cHHHHHhhC-CCCCccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 019539 131 LELPCKYYHLGCPEIFPYY-SKLKHEVMC-TFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKV 191 (339)
Q Consensus 131 l~v~C~~~~~GC~~~~~~~-~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 191 (339)
..+.|+. |...+... .+..|+..- .-+++.|+. |+... ....|..|++..|+.
T Consensus 36 ~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~~~~ 91 (110)
T 2csh_A 36 RPYGCGV----CGKKFKMKHHLVGHMKIHTGIKPYECNI----CAKRFMWRDSFHRHVTSCTKS 91 (110)
T ss_dssp CSEECTT----TSCEESSSHHHHHHHTTTCCCCCEECSS----SCCEESCHHHHHHHHHHHHHH
T ss_pred cCccCCC----CCcccCCHHHHHHHHHHcCCCCCeeCCC----CcchhcCHHHHHHHHHHcccc
Confidence 3456665 66655543 456776532 346789986 77766 467999999987764
No 100
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=68.53 E-value=4.6 Score=27.40 Aligned_cols=45 Identities=24% Similarity=0.494 Sum_probs=30.6
Q ss_pred CCCccCcC-cHHHHHhh-C--CCCCccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 019539 142 CPEIFPYY-SKLKHEVM-C--TFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHK 190 (339)
Q Consensus 142 C~~~~~~~-~~~~He~~-C--~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 190 (339)
|...+... .+..|... - .-+|+.|+. |+... ....|..|++..|.
T Consensus 16 C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~----C~k~f~~~~~L~~H~~~~H~ 65 (66)
T 2drp_A 16 CSRVYTHISNFCRHYVTSHKRNVKVYPCPF----CFKEFTRKDNMTAHVKIIHK 65 (66)
T ss_dssp TCCEESSHHHHHHHHHHHSSSSCCCEECTT----TCCEESCHHHHHHHHHHHTC
T ss_pred CcchhCCHHHHHHHHHHHcCCCCcCeECCC----CCCccCCHHHHHHHHHHHcC
Confidence 65555433 45667654 2 557899986 77655 45789999998875
No 101
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=68.33 E-value=4.9 Score=30.43 Aligned_cols=57 Identities=16% Similarity=0.327 Sum_probs=41.1
Q ss_pred HhhhccccCCCCCCCCCCcc--CcCcHHHHHhhCCCCCccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 019539 127 VAESLELPCKYYHLGCPEIF--PYYSKLKHEVMCTFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKV 191 (339)
Q Consensus 127 ~l~~l~v~C~~~~~GC~~~~--~~~~~~~He~~C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 191 (339)
....-.+.|+. |...+ ....+..|+....-+++.|+. |+... ....|..|++..|..
T Consensus 29 ~~~~~~~~C~~----C~k~F~~~~~~L~~H~~~h~~k~~~C~~----Cgk~F~~~~~L~~H~~~~H~~ 88 (96)
T 2ctd_A 29 IVDKGSVSCPT----CQAVGRKTIEGLKKHMENCKQEMFTCHH----CGKQLRSLAGMKYHVMANHNS 88 (96)
T ss_dssp HHHTSCEECTT----TCSCEESSHHHHHHHHHHHCCCCCCCSS----SCCCCSSHHHHHHHHHHHTCC
T ss_pred hcCCCCcCCCC----CCCCcccCHHHHHHHHHHHCCCCeECCC----CCCeeCCHHHHHHHhHHhcCC
Confidence 34455678886 88887 445678888655668899986 77665 457899996666754
No 102
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=68.13 E-value=0.4 Score=35.31 Aligned_cols=76 Identities=13% Similarity=0.211 Sum_probs=46.5
Q ss_pred CCCCcccccccchhhH--HHHHhhhccccCCCCCCCCCCccCcC-cHHHHHhhCCCCCccCCCCCCCCcccc-ChhHHHH
Q 019539 108 RCPTCRQELGDIRCLA--LEKVAESLELPCKYYHLGCPEIFPYY-SKLKHEVMCTFRPYNCPYAGSDCSVVG-DIPYLVA 183 (339)
Q Consensus 108 ~CP~Cr~~~~~~r~~a--lek~l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C~f~p~~CP~~g~~C~~~g-~~~~L~~ 183 (339)
.|+.|...+.....+. +..-...-.+.|+. |...+... .+..|...---.++.|+. |+... ....|..
T Consensus 5 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~c~~----C~~~f~~~~~L~~ 76 (88)
T 1llm_C 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDI----CGRKFARSDERKRHRDIQHILPILEDK----VEELLSKNYHLEN 76 (88)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHH
T ss_pred cCCCCCCccCCHHHHHHHHHHcCCCCCccCCC----CCCccCCHHHHHHHHHHhCCCcchHHH----HHHHHHHHhhhHH
Confidence 5777877665433222 22223334567765 77766553 466776554446778875 77655 3468999
Q ss_pred HhhhcCCC
Q 019539 184 HLRDDHKV 191 (339)
Q Consensus 184 Hl~~~H~~ 191 (339)
|++..|+.
T Consensus 77 H~~~~h~~ 84 (88)
T 1llm_C 77 EVARLKKL 84 (88)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
No 103
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=67.40 E-value=6.1 Score=27.81 Aligned_cols=47 Identities=28% Similarity=0.452 Sum_probs=30.5
Q ss_pred CCCccCcC-cHHHHHh-hCC--CCCccCCCCCCCCcccc-ChhHHHHHhhhcCCCC
Q 019539 142 CPEIFPYY-SKLKHEV-MCT--FRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKVD 192 (339)
Q Consensus 142 C~~~~~~~-~~~~He~-~C~--f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~ 192 (339)
|...+... .+..|+. .-. -+++.|+. |+... ....|..|++..|...
T Consensus 21 C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~~ 72 (77)
T 2ct1_A 21 CHARFTQSGTMKMHILQKHTENVAKFHCPH----CDTVIARKSDLGVHLRKQHSYS 72 (77)
T ss_dssp TCCEESCHHHHHHHHHHHSSSSCSSEECSS----SSCEESSHHHHHHHHHHTSCCS
T ss_pred cCchhCCHHHHHHHHHHhcCCCCCccCCCC----CCCccCCHHHHHHHHHHhCCCC
Confidence 55444432 3456653 232 26889986 77766 4579999999998763
No 104
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=66.98 E-value=7.7 Score=27.76 Aligned_cols=74 Identities=16% Similarity=0.328 Sum_probs=43.1
Q ss_pred CCC--CcccccccchhhH--HHHHhhhccccCCCCCCCCCCccCcC-cHHHHHhh-CCCCCccCCCCCCCCcccc-ChhH
Q 019539 108 RCP--TCRQELGDIRCLA--LEKVAESLELPCKYYHLGCPEIFPYY-SKLKHEVM-CTFRPYNCPYAGSDCSVVG-DIPY 180 (339)
Q Consensus 108 ~CP--~Cr~~~~~~r~~a--lek~l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~ 180 (339)
.|+ .|...+.....+. +......-.+.|+. |...+... .+..|+.. -.-+++.|+. |+... ....
T Consensus 6 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~ 77 (90)
T 1a1h_A 6 ACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI----CMRNFSRSDHLTTHIRTHTGEKPFACDI----CGRKFARSDE 77 (90)
T ss_dssp ECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHH
T ss_pred ECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCC----CCcccCCHHHHHHHHHHcCCCCCccCCC----CCchhCCHHH
Confidence 465 4766655432221 22222334567765 77665553 45667642 2446889986 77765 4578
Q ss_pred HHHHhhhcC
Q 019539 181 LVAHLRDDH 189 (339)
Q Consensus 181 L~~Hl~~~H 189 (339)
|..|++..+
T Consensus 78 l~~H~~~H~ 86 (90)
T 1a1h_A 78 RKRHTKIHL 86 (90)
T ss_dssp HHHHHGGGG
T ss_pred HHHHHHHhc
Confidence 999987644
No 105
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=65.96 E-value=9 Score=30.62 Aligned_cols=115 Identities=17% Similarity=0.292 Sum_probs=67.1
Q ss_pred CCCCeeeecccCccCcccc-eecc--CCce-----eccccccccCCCCCCcccccccchhhH--HHHHhhhccccCCCCC
Q 019539 70 SVHELLECPVCTNSMYPPI-HQCH--NGHT-----LCSTCKTRVHNRCPTCRQELGDIRCLA--LEKVAESLELPCKYYH 139 (339)
Q Consensus 70 ~l~~~l~CpIC~~~l~~Pi-~qC~--~GH~-----fC~~C~~~~~~~CP~Cr~~~~~~r~~a--lek~l~~l~v~C~~~~ 139 (339)
+....+.|++|...|.... +.=. .-|. -...|. ...|+.|...+.....+. +..-...-.+.|+.
T Consensus 21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~---~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~-- 95 (155)
T 2rpc_A 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY---WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF-- 95 (155)
T ss_dssp TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCC---BTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC--
T ss_pred hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCcccc---ccCCCCcccccCCHHHHHHHHHhcCCCCcccCCc--
Confidence 3456788999999998653 2110 0011 011110 146999988876533322 22222334577864
Q ss_pred CCCCCccCcC-cHHHHHhhC-CCCCccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 019539 140 LGCPEIFPYY-SKLKHEVMC-TFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKV 191 (339)
Q Consensus 140 ~GC~~~~~~~-~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 191 (339)
.+|...+... .+..|+..- .-+++.|+..+ |+... ....|..|++..+..
T Consensus 96 ~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~--C~k~f~~~~~L~~H~~~H~~~ 148 (155)
T 2rpc_A 96 PGCGKIFARSENLKIHKRTHTGEKPFKCEFEG--CDRRFANSSDRKKHMHVHTSD 148 (155)
T ss_dssp TTTCCEESCHHHHHHHHTTTCSSCSBCCSSTT--CCCCBSSHHHHHHSSTTTTSC
T ss_pred CCCCCccCCHHHHHHHHHhhCCCCCccCCCCC--CCCccCCHHHHHHHHHHhcCC
Confidence 3688877654 567888643 34689998633 77766 456899998754443
No 106
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.89 E-value=2.6 Score=29.07 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=25.4
Q ss_pred HhhCCCCCccCCCCCCCCccccChhHHHHHhhhcCCC
Q 019539 155 EVMCTFRPYNCPYAGSDCSVVGDIPYLVAHLRDDHKV 191 (339)
Q Consensus 155 e~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~ 191 (339)
+++|+.+|+.|+. |+.......|..|++. ...
T Consensus 3 ~~~C~~~~~~C~~----C~k~f~~~~L~~H~~~-~~~ 34 (66)
T 2eod_A 3 SGSSGKRTQPCTY----CTKEFVFDTIQSHQYQ-CPR 34 (66)
T ss_dssp SSCCCCCEEECSS----SCCEEEHHHHHHHHHH-CSS
T ss_pred cccCCCCCeeccc----cCCccCHHHHHHHHHH-cCC
Confidence 3579999999997 7776667899999987 443
No 107
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=63.87 E-value=2.6 Score=33.54 Aligned_cols=46 Identities=17% Similarity=0.411 Sum_probs=36.1
Q ss_pred CCeeeecccCccCcccceeccCCceecccccccc-CCCCCCcccccc
Q 019539 72 HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV-HNRCPTCRQELG 117 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~-~~~CP~Cr~~~~ 117 (339)
.+-|.|..|...|...-+.-..|..+|..|..+. ..+|..|..+|.
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCC
Confidence 3568999999999864443456999999998764 478999999876
No 108
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=63.62 E-value=1.5 Score=40.37 Aligned_cols=11 Identities=55% Similarity=1.072 Sum_probs=0.0
Q ss_pred ccccccCCCCC
Q 019539 17 DEDEISHHHHP 27 (339)
Q Consensus 17 ~~~~~~~~~~~ 27 (339)
|+||.||||||
T Consensus 5 ~~~~~~~~~~~ 15 (256)
T 3llq_A 5 DDDDKHHHHHH 15 (256)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 44444444333
No 109
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=63.47 E-value=12 Score=24.58 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=30.1
Q ss_pred CCCccCc-CcHHHHHhhC-CCCCccCCCCCCCCcccc-ChhHHHHHhhhcCCCC
Q 019539 142 CPEIFPY-YSKLKHEVMC-TFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKVD 192 (339)
Q Consensus 142 C~~~~~~-~~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~ 192 (339)
|...+.. ..+..|+..- .-+++.|+. |+... ....|..|++..|...
T Consensus 8 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~H~~~ 57 (60)
T 2adr_A 8 CTRAFARQEHLKRHYRSHTNEKPYPCGL----CNRAFTRRDLLIRHAQKIHSGN 57 (60)
T ss_dssp TCCCBSCHHHHHHHHHTTTSSCSEECTT----TCCEESSHHHHHHHHTTTSCCS
T ss_pred CccccCCHHHHHHHHHHhCCCCCccCCC----CCCccCCHHHHHHHHHHHcCCc
Confidence 5544443 2355665432 236789986 77765 4679999998888754
No 110
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=62.76 E-value=3.9 Score=44.20 Aligned_cols=64 Identities=13% Similarity=0.013 Sum_probs=51.8
Q ss_pred cCCCCeeeecccCccCcccceeccCC-ceecccccccc---CCCCCCccccccc---chhhHHHHHhhhccc
Q 019539 69 TSVHELLECPVCTNSMYPPIHQCHNG-HTLCSTCKTRV---HNRCPTCRQELGD---IRCLALEKVAESLEL 133 (339)
Q Consensus 69 ~~l~~~l~CpIC~~~l~~Pi~qC~~G-H~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~alek~l~~l~v 133 (339)
.+.++.|.|||=.++|++||.-.. | +++=+..+.+| ...||.=|.++.. ++|.++...++.+..
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilps-G~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~ 956 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPA-SKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKK 956 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCC-CCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence 467899999999999999996443 6 68999999887 3679988888864 689999888877643
No 111
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=61.24 E-value=8.1 Score=32.16 Aligned_cols=76 Identities=21% Similarity=0.402 Sum_probs=42.9
Q ss_pred CCCCcccccccchhhH--HHHHhhhccccCCCCCCCCCCccCcC-cHHHHHhh-CCCCCccCCCCCCCCcccc-ChhHHH
Q 019539 108 RCPTCRQELGDIRCLA--LEKVAESLELPCKYYHLGCPEIFPYY-SKLKHEVM-CTFRPYNCPYAGSDCSVVG-DIPYLV 182 (339)
Q Consensus 108 ~CP~Cr~~~~~~r~~a--lek~l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~ 182 (339)
.|+.|...+.....+. +........+.|+. |...+... .+..|+.. -.-+++.|+. |+... ....|.
T Consensus 79 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~ 150 (190)
T 2i13_A 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPE----CGKSFSQLAHLRAHQRTHTGEKPYKCPE----CGKSFSREDNLH 150 (190)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHTCCCEECTT----TCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHH
T ss_pred cCcccCCccCCHHHHHHHHHhcCCCCCCcCCC----CCCccCCHHHHHHHHHHhCCCCCeECCC----CCcccCCHHHHH
Confidence 5888877665433322 22222334566765 77666544 45666643 2346777775 66655 345777
Q ss_pred HHhhhcCCC
Q 019539 183 AHLRDDHKV 191 (339)
Q Consensus 183 ~Hl~~~H~~ 191 (339)
.|++..+..
T Consensus 151 ~H~~~H~~~ 159 (190)
T 2i13_A 151 THQRTHTGE 159 (190)
T ss_dssp HHHHHHHCC
T ss_pred HHHHhcCCC
Confidence 887765543
No 112
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=60.67 E-value=3.9 Score=32.01 Aligned_cols=51 Identities=29% Similarity=0.603 Sum_probs=39.7
Q ss_pred CCccCCCCeeeecccCccCcccceeccCCceecccccccc---CCCCCCccccccc
Q 019539 66 APATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV---HNRCPTCRQELGD 118 (339)
Q Consensus 66 ~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 118 (339)
.....+.-.+.|..|-...+. .+.|. .|-+|..|+..+ +..||+|..++..
T Consensus 20 ~~d~s~~G~~nCKsCWf~~k~-LV~C~-dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 20 IPDATHLGPQFCKSCWFENKG-LVECN-NHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp SSSCCCSCCCCCCSSCSCCSS-EEECS-SCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cCCccccCcccChhhccccCC-eeeec-chhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 444566778889999877774 46684 799999999865 4789999998854
No 113
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=59.63 E-value=3.4 Score=31.36 Aligned_cols=38 Identities=34% Similarity=0.879 Sum_probs=27.0
Q ss_pred eeecccCccCcccceeccCCceecccccccc--CCCCCCcccccc
Q 019539 75 LECPVCTNSMYPPIHQCHNGHTLCSTCKTRV--HNRCPTCRQELG 117 (339)
Q Consensus 75 l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~--~~~CP~Cr~~~~ 117 (339)
..||.|...|..- .+...|..|-..+ ...||.|.+++.
T Consensus 3 ~~CP~C~~~l~~~-----~~~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN-----GDTAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC-----SSEEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccC-----CCceECccccccCCCcccCcchhhHHH
Confidence 6799999888742 2455577886654 257999988864
No 114
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=59.30 E-value=6.3 Score=25.71 Aligned_cols=45 Identities=27% Similarity=0.466 Sum_probs=26.7
Q ss_pred CCCccCcC-cHHHHHhhC-CCCCccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 019539 142 CPEIFPYY-SKLKHEVMC-TFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHK 190 (339)
Q Consensus 142 C~~~~~~~-~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 190 (339)
|...+... .+..|+..- .-+|+.|+. |+... ....|..|++..|+
T Consensus 10 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~hh~ 57 (57)
T 3uk3_C 10 CGKFFRSNYYLNIHLRTHTGEKPYKCEF----CEYAAAQKTSLRYHLERHHK 57 (57)
T ss_dssp TCCBCSCHHHHHHHHHHHHCCCCEECSS----SSCEESSHHHHHHHHHHHC-
T ss_pred CcchhCChHHHHHHHHHcCCCCCcCCCC----CcchhCCHHHHHHHHHHhcC
Confidence 44443332 344454321 246788986 77765 45789999988774
No 115
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.65 E-value=8.7 Score=28.80 Aligned_cols=35 Identities=23% Similarity=0.617 Sum_probs=25.0
Q ss_pred CCCCeeeecccCccCcccc--eeccC-Cceeccccccc
Q 019539 70 SVHELLECPVCTNSMYPPI--HQCHN-GHTLCSTCKTR 104 (339)
Q Consensus 70 ~l~~~l~CpIC~~~l~~Pi--~qC~~-GH~fC~~C~~~ 104 (339)
...+.-.|.+|...|..-. ..|-+ |.+||..|...
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4455667999999986432 34432 99999999764
No 116
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.11 E-value=7.2 Score=27.42 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=22.8
Q ss_pred CCCccCCCCCCCCcccc-ChhHHHHHhhhcCCCC
Q 019539 160 FRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKVD 192 (339)
Q Consensus 160 f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~ 192 (339)
-+++.|+. |+... ....|..|++..|...
T Consensus 36 ~~~~~C~~----C~k~f~~~~~L~~H~~~~H~~~ 65 (78)
T 2d9h_A 36 ALRFPCEF----CGKRFEKPDSVAAHRSKSHPAL 65 (78)
T ss_dssp TCCEECTT----TCCEESSHHHHHHHHHHTSTTT
T ss_pred CcccCCCC----CCchhCCHHHHHHHHHHhCCCC
Confidence 46788986 77766 4579999999999864
No 117
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=57.03 E-value=5.6 Score=28.31 Aligned_cols=37 Identities=22% Similarity=0.610 Sum_probs=27.8
Q ss_pred eecccCccCcccc-eeccC-Cceecccccc---ccCCCCCCc
Q 019539 76 ECPVCTNSMYPPI-HQCHN-GHTLCSTCKT---RVHNRCPTC 112 (339)
Q Consensus 76 ~CpIC~~~l~~Pi-~qC~~-GH~fC~~C~~---~~~~~CP~C 112 (339)
.|-.|...+.+.. ++|+. ++.||..|=. .....||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4999999986554 88875 7899999943 224689987
No 118
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=56.98 E-value=5.6 Score=30.53 Aligned_cols=108 Identities=20% Similarity=0.386 Sum_probs=59.5
Q ss_pred Ceeeec--ccCccCcccc-eeccCCceeccccccccCCCCCCcccccccchhhHHH--HHhhhccccCCCCCCCCCCccC
Q 019539 73 ELLECP--VCTNSMYPPI-HQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALE--KVAESLELPCKYYHLGCPEIFP 147 (339)
Q Consensus 73 ~~l~Cp--IC~~~l~~Pi-~qC~~GH~fC~~C~~~~~~~CP~Cr~~~~~~r~~ale--k~l~~l~v~C~~~~~GC~~~~~ 147 (339)
..+.|+ +|...+.... +. .|.-=. ......|+.|...+.....+..- .-...-.+.|+. .+|...+.
T Consensus 4 ~~~~C~~~~C~~~f~~~~~l~---~H~~~h---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~ 75 (124)
T 1ubd_C 4 RTIACPHKGCTKMFRDNSAMR---KHLHTH---GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF--EGCGKRFS 75 (124)
T ss_dssp -CEECCSTTCCCEESSHHHHH---HHHGGG---SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCS--TTCCCEES
T ss_pred CcccCCCCCCcCccCCHHHHH---HHHHHc---CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCC--CCCcCccC
Confidence 457888 7888887542 21 122100 11124699998877653332211 111223456653 25877765
Q ss_pred cC-cHHHHHhh-CCCCCccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 019539 148 YY-SKLKHEVM-CTFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHK 190 (339)
Q Consensus 148 ~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 190 (339)
.. .+..|+.. -.-+++.||+. .|+... ....|..|++..+.
T Consensus 76 ~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~L~~H~~~H~~ 119 (124)
T 1ubd_C 76 LDFNLRTHVRIHTGDRPYVCPFD--GCNKKFAQSTNLKSHILTHAK 119 (124)
T ss_dssp CHHHHHHHHHHHHCCCCCCCCST--TCCCCCSSTTTTHHHHHHHC-
T ss_pred CHHHHHHHHHHhCCCCceECCCC--CCCCccCCHHHHHHHHHHHcc
Confidence 54 45677643 23467889853 277765 45688999886544
No 119
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=55.89 E-value=21 Score=25.91 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=26.6
Q ss_pred CCCCccCcC-cHHHHHhh-CCCCCccCCCCCCCCcccc-ChhHHHHHhhhc
Q 019539 141 GCPEIFPYY-SKLKHEVM-CTFRPYNCPYAGSDCSVVG-DIPYLVAHLRDD 188 (339)
Q Consensus 141 GC~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~ 188 (339)
+|...+... .+..|+.. -.-+++.|+. |+... ....|..|++..
T Consensus 52 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~H 98 (100)
T 2ebt_A 52 GCDWRFARSDELTRHYRKHTGAKPFQCGV----CNRSFSRSDHLALHMKRH 98 (100)
T ss_dssp SCCCEESSHHHHHHHHHHHTSCCSCBCSS----SCCBCSSHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHhCCCCCeECCC----CcCccCCHHHHHHHHHHh
Confidence 455554433 34556532 3346788986 77655 457899998753
No 120
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=54.57 E-value=13 Score=30.92 Aligned_cols=75 Identities=24% Similarity=0.474 Sum_probs=34.3
Q ss_pred CCCCcccccccchhhH--HHHHhhhccccCCCCCCCCCCccCcC-cHHHHHhh-CCCCCccCCCCCCCCcccc-ChhHHH
Q 019539 108 RCPTCRQELGDIRCLA--LEKVAESLELPCKYYHLGCPEIFPYY-SKLKHEVM-CTFRPYNCPYAGSDCSVVG-DIPYLV 182 (339)
Q Consensus 108 ~CP~Cr~~~~~~r~~a--lek~l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~ 182 (339)
.|+.|...+.....+. +......-.+.|+. |...+... .+..|+.. -.-+++.|+. |+... ....|.
T Consensus 51 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~ 122 (190)
T 2i13_A 51 KCPECGKSFSDKKDLTRHQRTHTGEKPYKCPE----CGKSFSQRANLRAHQRTHTGEKPYACPE----CGKSFSQLAHLR 122 (190)
T ss_dssp ECTTTCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHHHHHHHHHTCCCEECTT----TCCEESSHHHHH
T ss_pred cCCCcCchhCCHHHHHHHHHhcCCCCCccCcc----cCCccCCHHHHHHHHHhcCCCCCCcCCC----CCCccCCHHHHH
Confidence 4666655554322211 11122223455554 65554432 34455432 2335566664 55444 344666
Q ss_pred HHhhhcCC
Q 019539 183 AHLRDDHK 190 (339)
Q Consensus 183 ~Hl~~~H~ 190 (339)
.|++..+.
T Consensus 123 ~H~~~h~~ 130 (190)
T 2i13_A 123 AHQRTHTG 130 (190)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCC
Confidence 66665443
No 121
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=54.46 E-value=6.6 Score=28.25 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=32.6
Q ss_pred CCeeeecccCccCcccceeccCCceecc-cccccc-CCCCCCccccc
Q 019539 72 HELLECPVCTNSMYPPIHQCHNGHTLCS-TCKTRV-HNRCPTCRQEL 116 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~Pi~qC~~GH~fC~-~C~~~~-~~~CP~Cr~~~ 116 (339)
.+-|.|..|...|..-.+.-.+|.++|. .|..+. ..+|..|...+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCce
Confidence 3568899999998864333356899999 698764 46788887653
No 122
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.93 E-value=3.7 Score=29.21 Aligned_cols=39 Identities=13% Similarity=0.352 Sum_probs=24.9
Q ss_pred CeeeecccCccCcccceeccCCceeccccccccCCCCCC
Q 019539 73 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPT 111 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~~~CP~ 111 (339)
+=|.|..|...|..-.+.=.+|.++|..|..+...+|+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~~~~ 70 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLESGPS 70 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHTCSS
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHccCCC
Confidence 447788888887643343345778888887665445554
No 123
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=52.81 E-value=11 Score=28.39 Aligned_cols=32 Identities=25% Similarity=0.531 Sum_probs=22.8
Q ss_pred eeeecccCccCcc----cceecc-CCceecccccccc
Q 019539 74 LLECPVCTNSMYP----PIHQCH-NGHTLCSTCKTRV 105 (339)
Q Consensus 74 ~l~CpIC~~~l~~----Pi~qC~-~GH~fC~~C~~~~ 105 (339)
..-||-|...+.. +.++|+ +|+.||..|...+
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3349988886642 225785 6999999998766
No 124
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=51.35 E-value=23 Score=22.79 Aligned_cols=45 Identities=24% Similarity=0.408 Sum_probs=27.8
Q ss_pred CCCccCcC-cHHHHHhh-CCCCCccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 019539 142 CPEIFPYY-SKLKHEVM-CTFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHK 190 (339)
Q Consensus 142 C~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 190 (339)
|...+... .+..|+.. -.-+++.|+. |+... ....|..|++..|.
T Consensus 7 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~ 54 (57)
T 1bbo_A 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTY----CNFSFKTKGNLTKHMKSKAH 54 (57)
T ss_dssp TCCBCSSHHHHHHHHHHTSSCCCEECSS----SSCEESSHHHHHHHHHSSSS
T ss_pred CcCcCCCHHHHHHHHHhcCCCCCccCCC----CCchhcCHHHHHHHHHHhcc
Confidence 54444332 35566543 2346788986 77665 45789999886654
No 125
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=50.77 E-value=34 Score=27.09 Aligned_cols=79 Identities=18% Similarity=0.301 Sum_probs=46.2
Q ss_pred CCCCCcccccccchhhHHHHHh---hhcc--------ccCCCCCCCCCCccCcC-cHHHHHhhC-CCCCccCCCCCCCCc
Q 019539 107 NRCPTCRQELGDIRCLALEKVA---ESLE--------LPCKYYHLGCPEIFPYY-SKLKHEVMC-TFRPYNCPYAGSDCS 173 (339)
Q Consensus 107 ~~CP~Cr~~~~~~r~~alek~l---~~l~--------v~C~~~~~GC~~~~~~~-~~~~He~~C-~f~p~~CP~~g~~C~ 173 (339)
..|+.|...+.....+..-... .... +.|+. |...+... .+..|+..= .-+++.|+..+ |+
T Consensus 26 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~--C~ 99 (155)
T 2rpc_A 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR----EGKSFKAKYKLVNHIRVHTGEKPFPCPFPG--CG 99 (155)
T ss_dssp SSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTT----SSCCCSSHHHHHHHTHHHHCCCSEECSCTT--TC
T ss_pred cccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCC----cccccCCHHHHHHHHHhcCCCCcccCCcCC--CC
Confidence 4688887777654433221111 1111 34654 77666544 466776532 34789998643 87
Q ss_pred ccc-ChhHHHHHhhhcCCC
Q 019539 174 VVG-DIPYLVAHLRDDHKV 191 (339)
Q Consensus 174 ~~g-~~~~L~~Hl~~~H~~ 191 (339)
... ....|..|++..+..
T Consensus 100 ~~f~~~~~L~~H~~~h~~~ 118 (155)
T 2rpc_A 100 KIFARSENLKIHKRTHTGE 118 (155)
T ss_dssp CEESCHHHHHHHHTTTCSS
T ss_pred CccCCHHHHHHHHHhhCCC
Confidence 766 457999999865543
No 126
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=50.59 E-value=27 Score=27.58 Aligned_cols=26 Identities=27% Similarity=0.634 Sum_probs=12.6
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhhc
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRDD 188 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~ 188 (339)
+++.|+.. .|+... ....|..|++..
T Consensus 66 ~~~~C~~~--~C~~~f~~~~~l~~H~~~h 92 (155)
T 2gli_A 66 KPHKCTFE--GCRKSYSRLENLKTHLRSH 92 (155)
T ss_dssp CCCCCCST--TCCCCCSSHHHHHHHHHHT
T ss_pred CCccCCCC--CCCCcccCHHHHHHHHHHc
Confidence 45555532 154443 234566666543
No 127
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=50.42 E-value=12 Score=25.57 Aligned_cols=46 Identities=28% Similarity=0.438 Sum_probs=29.7
Q ss_pred CCCccCcC-cHHHHHhhC-CCCCccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 019539 142 CPEIFPYY-SKLKHEVMC-TFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKV 191 (339)
Q Consensus 142 C~~~~~~~-~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 191 (339)
|...+... .+..|+..- .-+++.|+. |+... ....|..|++..|..
T Consensus 15 C~k~f~~~~~L~~H~~~H~~~~~~~C~~----C~~~f~~~~~L~~H~~~h~~~ 63 (70)
T 1x5w_A 15 CSYSCSSKAALRIHERIHCTDRPFKCNY----CSFDTKQPSNLSKHMKKFHGD 63 (70)
T ss_dssp SSCEESSHHHHHHHHGGGCCSCSEECSS----SSCEESSHHHHHHHHHHHHSS
T ss_pred CCcccCCHHHHHHHHHHcCCCCCEeCCC----CCCccCCHHHHHHHHHHHhCC
Confidence 55544432 355666432 346789986 77766 457899999887764
No 128
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=50.38 E-value=12 Score=27.78 Aligned_cols=39 Identities=28% Similarity=0.730 Sum_probs=27.5
Q ss_pred eeeecc--cCccCcc----cceec------cCCceeccccccccCCCCCCccc
Q 019539 74 LLECPV--CTNSMYP----PIHQC------HNGHTLCSTCKTRVHNRCPTCRQ 114 (339)
Q Consensus 74 ~l~CpI--C~~~l~~----Pi~qC------~~GH~fC~~C~~~~~~~CP~Cr~ 114 (339)
..-||. |...+.. +..+| .+|+.||..|...++. -.|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C~~ 75 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GECSA 75 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCSSS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Ccccc
Confidence 555887 8777652 23678 4699999999988754 55654
No 129
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.44 E-value=13 Score=26.69 Aligned_cols=39 Identities=18% Similarity=0.404 Sum_probs=27.8
Q ss_pred CeeeecccCccCcccceeccCCceecccccccc-CCCCCC
Q 019539 73 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV-HNRCPT 111 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~-~~~CP~ 111 (339)
+=|.|..|...|....+.-.+|.++|..|..+. ...|..
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~ 73 (76)
T 1x68_A 34 ECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGP 73 (76)
T ss_dssp GGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSS
T ss_pred ccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCC
Confidence 458899999998754443456899999998764 244543
No 130
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.21 E-value=6.2 Score=29.51 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=35.9
Q ss_pred hccccCCCCCCCCCCccC-c-CcHHHHHhhCC--CCCccCCCCCCCCcccc-ChhHHHHHhhhcCCCC
Q 019539 130 SLELPCKYYHLGCPEIFP-Y-YSKLKHEVMCT--FRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKVD 192 (339)
Q Consensus 130 ~l~v~C~~~~~GC~~~~~-~-~~~~~He~~C~--f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~ 192 (339)
.-.+.|.. |...+. . ..+..|+.... -+++.|+. |+... ....|..|++..|...
T Consensus 22 ~~~~~C~~----C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~----C~k~F~~~~~L~~H~~~h~~~k 81 (98)
T 2gqj_A 22 RGEAVCPT----CNVVTRKTLVGLKKHMEVCQKLQDALKCQH----CRKQFKSKAGLNYHTMAEHSAK 81 (98)
T ss_dssp TSCCCCTT----TCCCCSSCSHHHHHHHHHHHHHHHHHSCSS----SCCCCSCHHHHHHHHHHHSCSC
T ss_pred CCCcCCCC----CCCChhhhHHHHHHHHHHHcCCCCCEECCC----CCCccCCHHHHHHHHHHHcCCC
Confidence 34566665 766664 3 34566655432 35788986 77665 4579999999888653
No 131
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=48.67 E-value=8.4 Score=34.76 Aligned_cols=44 Identities=20% Similarity=0.598 Sum_probs=32.2
Q ss_pred CeeeecccCccCcccceecc-CCceecccccccc-----CCCCCCcccccc
Q 019539 73 ELLECPVCTNSMYPPIHQCH-NGHTLCSTCKTRV-----HNRCPTCRQELG 117 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi~qC~-~GH~fC~~C~~~~-----~~~CP~Cr~~~~ 117 (339)
....|.+|.+++.+- ..|+ +++.|=..|+.++ ...||.|+.+..
T Consensus 179 ~i~~C~iC~~iv~~g-~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSC-EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCC-cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 477799999999953 5565 3677777777654 248999988765
No 132
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=48.19 E-value=28 Score=25.14 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=28.9
Q ss_pred CeeeecccCccCcccceeccCCceeccccccccCCCCCCc
Q 019539 73 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTC 112 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~~~CP~C 112 (339)
..-.|..|..-+.-+.++|.+|..||+.=+..-...|+..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fD 53 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFD 53 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCC
T ss_pred cCCcChhhCCccCccCEEeecCCEeccccCCcccCCCCch
Confidence 3457999999766556888889999997765433457654
No 133
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=48.16 E-value=35 Score=28.08 Aligned_cols=112 Identities=17% Similarity=0.237 Sum_probs=62.2
Q ss_pred CCCeeee--cccCccCcccc-eeccCCceeccccccccCCCC--CCcccccccchhhHH--HHHhhhccccCCCCCCCCC
Q 019539 71 VHELLEC--PVCTNSMYPPI-HQCHNGHTLCSTCKTRVHNRC--PTCRQELGDIRCLAL--EKVAESLELPCKYYHLGCP 143 (339)
Q Consensus 71 l~~~l~C--pIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~~~C--P~Cr~~~~~~r~~al--ek~l~~l~v~C~~~~~GC~ 143 (339)
....+.| +.|...+.... ++ -|.-=. .......| +.|...+.....+.. ..-...-.+.|+. ..|.
T Consensus 9 ~~~~~~C~~~~C~~~f~~~~~L~---~H~~~h--~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~ 81 (190)
T 1tf6_A 9 VYKRYICSFADCGAAYNKNWKLQ---AHLCKH--TGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS--DGCD 81 (190)
T ss_dssp -CCCCBCSSTTTCCBCSSHHHHH---HHHHHH--HCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCS--SSCC
T ss_pred CCcceeCCCCCCcchhCCHHHHH---HHHHhc--CCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCC--CCCC
Confidence 3566788 68988887653 21 121000 01112578 789887765433221 1112223466762 2488
Q ss_pred CccCcC-cHHHHH-hhC--CCCCccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 019539 144 EIFPYY-SKLKHE-VMC--TFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKV 191 (339)
Q Consensus 144 ~~~~~~-~~~~He-~~C--~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 191 (339)
..+... .+..|. ..- .-.++.|+.. .|+... ....|..|++..+..
T Consensus 82 ~~f~~~~~l~~H~~~~h~~~~~~~~C~~~--~C~k~f~~~~~L~~H~~~H~~~ 132 (190)
T 1tf6_A 82 LRFTTKANMKKHFNRFHNIKICVYVCHFE--NCGKAFKKHNQLKVHQFSHTQQ 132 (190)
T ss_dssp CEESCHHHHHHHHHTTSSTTTSCCEECSS--SSCEECSSHHHHHHHHGGGSSS
T ss_pred CccCCHHHHHHHHHHhcCCCcceeeCCCC--CCccccCCHHHHHHHHHHhCCC
Confidence 776654 567887 332 3457888442 288766 457899998865544
No 134
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=47.98 E-value=19 Score=26.77 Aligned_cols=46 Identities=24% Similarity=0.467 Sum_probs=30.0
Q ss_pred CCCccCcC-cHHHHHhh-CCCCCccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 019539 142 CPEIFPYY-SKLKHEVM-CTFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKV 191 (339)
Q Consensus 142 C~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 191 (339)
|...+... .+..|+.. =.-+|+.|+. |+... ....|..|++..|..
T Consensus 34 Cgk~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~~H~~~~H~~ 82 (85)
T 2lv2_A 34 CGESFASKGAQERHLRLLHAAQVFPCKY----CPATFYSSPGLTRHINKCHPS 82 (85)
T ss_dssp SCCEESSHHHHHHHHHTTSCSSSEECTT----SSCEESSHHHHHHHHHTTCTT
T ss_pred CCCCcCcHHHHhhhhhhccCCCccCCCC----CCCEeCCHHHHHHhCcccCcC
Confidence 44444332 34556542 2347889986 87765 567999999988864
No 135
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=47.41 E-value=27 Score=26.40 Aligned_cols=39 Identities=18% Similarity=0.403 Sum_probs=22.7
Q ss_pred CCeeeecccCccCcccc----eeccCCceeccccccccC--CCCCCcccc
Q 019539 72 HELLECPVCTNSMYPPI----HQCHNGHTLCSTCKTRVH--NRCPTCRQE 115 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~Pi----~qC~~GH~fC~~C~~~~~--~~CP~Cr~~ 115 (339)
...+.|.+|..+..+.. ..=+-|-. +..+. -.||.|..+
T Consensus 25 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~-----fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEALGWPEDGIAAGTR-----WDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CCEEEETTTCCEEETTTCBTTTTBCTTCC-----TTTSCTTCCCTTTCCC
T ss_pred cceEEeCCCCEEEcCCcCCcccCcCCCCC-----hhHCCCCCcCCCCCCC
Confidence 36899999998866421 10011332 23332 279999875
No 136
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=46.89 E-value=9.5 Score=27.83 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=22.5
Q ss_pred ccCCCCeeeecccCccCcccceeccCCceecccccc
Q 019539 68 ATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKT 103 (339)
Q Consensus 68 ~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~ 103 (339)
...+.+.|.||+|...|.--. .. |-++|..|..
T Consensus 2 d~~LL~iL~CP~ck~~L~~~~-~~--~~LiC~~cg~ 34 (68)
T 2jr6_A 2 EKKFLDILVCPVTKGRLEYHQ-DK--QELWSRQAKL 34 (68)
T ss_dssp CCSSSCCCBCSSSCCBCEEET-TT--TEEEETTTTE
T ss_pred ChHHhhheECCCCCCcCeEeC-CC--CEEEcCCCCc
Confidence 456889999999998766321 22 6677776644
No 137
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=46.39 E-value=33 Score=25.54 Aligned_cols=49 Identities=22% Similarity=0.419 Sum_probs=22.1
Q ss_pred cccCCCCCCCCCCccCcC-cHHHHHhh-CCCCCccCCCCCCCCcccc-ChhHHHHHhh
Q 019539 132 ELPCKYYHLGCPEIFPYY-SKLKHEVM-CTFRPYNCPYAGSDCSVVG-DIPYLVAHLR 186 (339)
Q Consensus 132 ~v~C~~~~~GC~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~ 186 (339)
.+.|+. |...+... .+..|+.. -.-+++.|+.. .|+... ....|..|++
T Consensus 66 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~L~~H~~ 117 (119)
T 2jp9_A 66 PFQCKT----CQRKFSRSDHLKTHTRTHTGEKPFSCRWP--SCQKKFARSDELVRHHN 117 (119)
T ss_dssp CEECTT----TCCEESCHHHHHHHHHHHHTCCCEECCST--TCCCEESSHHHHHHHHH
T ss_pred CccCCc----cCchhCCHHHHHHHHHHhcCCCCeeCCCC--CCccccCCHHHHHHHHh
Confidence 445554 55554433 34455432 12345566321 155544 2345666654
No 138
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=45.70 E-value=8 Score=32.90 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=6.1
Q ss_pred eeecccCccCcc
Q 019539 75 LECPVCTNSMYP 86 (339)
Q Consensus 75 l~CpIC~~~l~~ 86 (339)
-.|..|.+++..
T Consensus 61 ~~C~~C~~~I~~ 72 (182)
T 2jtn_A 61 PMCAGCDQHILD 72 (182)
T ss_dssp CBCBTSSSBCCC
T ss_pred CcCccCCCCccC
Confidence 345555555543
No 139
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=45.68 E-value=15 Score=27.28 Aligned_cols=29 Identities=34% Similarity=0.608 Sum_probs=22.6
Q ss_pred CCccCCCCCCCCccccC-hhHHHHHhhhcCCC
Q 019539 161 RPYNCPYAGSDCSVVGD-IPYLVAHLRDDHKV 191 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g~-~~~L~~Hl~~~H~~ 191 (339)
+||.|+..+ |+.... ...|..|++..|..
T Consensus 26 KPYkC~~~~--CgKaFsr~s~L~~H~rriHTg 55 (73)
T 1x3c_A 26 RPYRCVHQG--CFAAFTIQQNLILHYQAVHKS 55 (73)
T ss_dssp CSCBCCSTT--CCCBCSSHHHHHHHHHHHSSS
T ss_pred CCeECCCCC--cChhHcCHHHHHHHhhhhCCC
Confidence 799998754 888774 57999998766764
No 140
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=45.10 E-value=21 Score=27.52 Aligned_cols=44 Identities=20% Similarity=0.600 Sum_probs=29.6
Q ss_pred eeeecccCccCc-----ccceeccC-Cceeccccccc----cCCCCCCcccccc
Q 019539 74 LLECPVCTNSMY-----PPIHQCHN-GHTLCSTCKTR----VHNRCPTCRQELG 117 (339)
Q Consensus 74 ~l~CpIC~~~l~-----~Pi~qC~~-GH~fC~~C~~~----~~~~CP~Cr~~~~ 117 (339)
.-.|.||.+-+- .+..-|.. +-.+|+.|..- -...||.|+..+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 356999998754 23233431 67899999752 2468999988775
No 141
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=44.91 E-value=69 Score=23.71 Aligned_cols=42 Identities=19% Similarity=0.395 Sum_probs=30.5
Q ss_pred CeeeecccCccCcccceeccCCceeccccccccCCCCCCccc
Q 019539 73 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQ 114 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~~~CP~Cr~ 114 (339)
..-.|..|..-+.-+.++|.+|..||+.=+-.-...|+..-+
T Consensus 24 ~~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk 65 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFK 65 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTT
T ss_pred cCccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchh
Confidence 456799999887765688988999999776543345766544
No 142
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=44.45 E-value=4.7 Score=36.96 Aligned_cols=18 Identities=39% Similarity=0.579 Sum_probs=0.0
Q ss_pred cccccccCCCCCCccccc
Q 019539 16 MDEDEISHHHHPPLLHHH 33 (339)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (339)
||-.|.+..|||.|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (256)
T 3llq_A 1 MDYKDDDDKHHHHHHHHH 18 (256)
T ss_dssp ------------------
T ss_pred CCCccccccccccccccc
Confidence 567777777777777764
No 143
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=44.08 E-value=18 Score=25.30 Aligned_cols=36 Identities=14% Similarity=0.443 Sum_probs=24.2
Q ss_pred CccCCCCeeeecccCccCcccceeccCCceeccccccc
Q 019539 67 PATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTR 104 (339)
Q Consensus 67 ~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~ 104 (339)
+.+.+...+.||.|...- -++.-..|-++|..|-.-
T Consensus 4 ~~~~ll~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 4 SRLDALPRVTCPNHPDAI--LVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CSCCCCSCCSBTTBSSSC--CEECSSSCCEECTTTCCE
T ss_pred chhhccccccCcCCCCCc--eeEeCCCCeEEeCCCCCE
Confidence 445678888999997622 123334588999988543
No 144
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=43.84 E-value=7 Score=31.12 Aligned_cols=46 Identities=20% Similarity=0.457 Sum_probs=34.3
Q ss_pred CCeeeecccCccCcc--cceeccCCceecccccccc-CC--CCCCcccccc
Q 019539 72 HELLECPVCTNSMYP--PIHQCHNGHTLCSTCKTRV-HN--RCPTCRQELG 117 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~--Pi~qC~~GH~fC~~C~~~~-~~--~CP~Cr~~~~ 117 (339)
.+-|.|..|...|.. ..+.-..|..+|..|..+. .. .|..|..++.
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 466889999999963 2343456999999998765 23 7999988774
No 145
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=43.22 E-value=13 Score=26.96 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=23.9
Q ss_pred CccCCCCeeeecccCccCcccceeccCCceecccccc
Q 019539 67 PATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKT 103 (339)
Q Consensus 67 ~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~ 103 (339)
+...+.+.|.||+|...|.-- =..|.++|..|..
T Consensus 3 md~~LLeiL~CP~ck~~L~~~---~~~g~LvC~~c~~ 36 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRYL---ESEQLLVNERLNL 36 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEEE---TTTTEEEETTTTE
T ss_pred CCHHHHHHhCCCCCCCcCeEe---CCCCEEEcCCCCc
Confidence 556788999999999976632 1236677777654
No 146
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=42.86 E-value=27 Score=26.05 Aligned_cols=79 Identities=18% Similarity=0.327 Sum_probs=48.8
Q ss_pred CCCCC--cccccccchhhH--HHHHhhhccccCCCCCCCCCCccCcC-cHHHHHhh-CCCCCccCCCCCCCCcccc-Chh
Q 019539 107 NRCPT--CRQELGDIRCLA--LEKVAESLELPCKYYHLGCPEIFPYY-SKLKHEVM-CTFRPYNCPYAGSDCSVVG-DIP 179 (339)
Q Consensus 107 ~~CP~--Cr~~~~~~r~~a--lek~l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~ 179 (339)
..|+. |...+.....+. +..-...-.+.|++ ..|...+... .+..|+.. -.-+++.|+. |+... ...
T Consensus 7 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~ 80 (119)
T 2jp9_A 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDF--KDCERRFSRSDQLKRHQRRHTGVKPFQCKT----CQRKFSRSD 80 (119)
T ss_dssp BCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCS--TTCCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHH
T ss_pred eeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCC--CCCcCccCCHHHHHHHHHHcCCCCCccCCc----cCchhCCHH
Confidence 35765 877766533322 22233345567764 2588776654 46677653 2346789986 77765 467
Q ss_pred HHHHHhhhcCCC
Q 019539 180 YLVAHLRDDHKV 191 (339)
Q Consensus 180 ~L~~Hl~~~H~~ 191 (339)
.|..|++..+..
T Consensus 81 ~l~~H~~~h~~~ 92 (119)
T 2jp9_A 81 HLKTHTRTHTGE 92 (119)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHhcCC
Confidence 999999876554
No 147
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=41.98 E-value=9.6 Score=27.95 Aligned_cols=33 Identities=18% Similarity=0.499 Sum_probs=22.0
Q ss_pred ccCCCCeeeecccCccCcccceeccCCceecccccc
Q 019539 68 ATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKT 103 (339)
Q Consensus 68 ~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~ 103 (339)
...+.+.|.||+|...|.--. ..|-++|..|..
T Consensus 2 d~~LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg~ 34 (70)
T 2js4_A 2 ESRLLDILVCPVCKGRLEFQR---AQAELVCNADRL 34 (70)
T ss_dssp CCCCCCCCBCTTTCCBEEEET---TTTEEEETTTTE
T ss_pred ChHHhhheECCCCCCcCEEeC---CCCEEEcCCCCc
Confidence 356889999999999766321 135666666643
No 148
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=41.89 E-value=17 Score=27.11 Aligned_cols=35 Identities=26% Similarity=0.669 Sum_probs=25.4
Q ss_pred CCCCeeeecccCccCcccc--eeccC-Cceeccccccc
Q 019539 70 SVHELLECPVCTNSMYPPI--HQCHN-GHTLCSTCKTR 104 (339)
Q Consensus 70 ~l~~~l~CpIC~~~l~~Pi--~qC~~-GH~fC~~C~~~ 104 (339)
...+.-.|.+|...|..-. ..|-+ |.+||+.|...
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3445668999999987432 44432 99999999765
No 149
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=41.46 E-value=30 Score=28.51 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=9.9
Q ss_pred Ceeee--cccCccCccc
Q 019539 73 ELLEC--PVCTNSMYPP 87 (339)
Q Consensus 73 ~~l~C--pIC~~~l~~P 87 (339)
..+.| ++|...+...
T Consensus 41 ~~~~C~~~~C~~~f~~~ 57 (190)
T 1tf6_A 41 KPFPCKEEGCEKGFTSL 57 (190)
T ss_dssp CSSCCSSTTCCCCCSSH
T ss_pred CCccCCCCCCChhhCCH
Confidence 34677 7787777654
No 150
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=41.12 E-value=19 Score=25.48 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=24.3
Q ss_pred CCCCccCcC-cHHHHHhh-CCCCCccCCCCCCCCcccc-ChhHHHHHhhh
Q 019539 141 GCPEIFPYY-SKLKHEVM-CTFRPYNCPYAGSDCSVVG-DIPYLVAHLRD 187 (339)
Q Consensus 141 GC~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 187 (339)
+|...+... .+..|... -.-+++.|+. |+... ....|..|++.
T Consensus 42 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~ 87 (89)
T 2wbs_A 42 GCGWKFARSDELTRHYRKHTGHRPFQCQK----CDRAFSRSDHLALHMKR 87 (89)
T ss_dssp TTCCEESSHHHHHHHHHHHHCCCCEECSS----SSCEESSHHHHHHHGGG
T ss_pred CCCCccCCHHHHHHHHHHcCCCCCccCCC----CCcccCCHHHHHHHHHh
Confidence 466555433 34556532 2335777875 66655 44677788653
No 151
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.07 E-value=21 Score=22.30 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=18.6
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhh
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRD 187 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 187 (339)
+|+.|+..+ |++.. ....|..|++.
T Consensus 8 kp~~C~~~~--C~k~F~~~~~L~~H~r~ 33 (38)
T 2eln_A 8 ILLKCPTDG--CDYSTPDKYKLQAHLKV 33 (38)
T ss_dssp CCEECSSSS--CCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCC--CCCccCCHHHHHHHHHh
Confidence 688998643 88876 45689999875
No 152
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=41.07 E-value=8.9 Score=27.98 Aligned_cols=33 Identities=18% Similarity=0.474 Sum_probs=21.8
Q ss_pred ccCCCCeeeecccCccCcccceeccCCceecccccc
Q 019539 68 ATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKT 103 (339)
Q Consensus 68 ~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~ 103 (339)
...+.+.|.||+|...|.--. ..|-++|..|..
T Consensus 2 d~~LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg~ 34 (68)
T 2hf1_A 2 DAKFLEILVCPLCKGPLVFDK---SKDELICKGDRL 34 (68)
T ss_dssp CCCCEEECBCTTTCCBCEEET---TTTEEEETTTTE
T ss_pred ChHHhhheECCCCCCcCeEeC---CCCEEEcCCCCc
Confidence 346788999999998766321 135666666643
No 153
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=40.94 E-value=44 Score=23.04 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=23.0
Q ss_pred HHHHHhhC-CCCCccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 019539 151 KLKHEVMC-TFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHK 190 (339)
Q Consensus 151 ~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 190 (339)
+..|+..- .-+++.|+. |+... ....|..|++..+.
T Consensus 34 l~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~~ 71 (77)
T 2cot_A 34 LSKHRRTHTGEKPYKCDE----CGKAFIQRSHLIGHHRVHTG 71 (77)
T ss_dssp HHHHHTTTCCSCSEECSS----SCCEESSHHHHHHHGGGSCC
T ss_pred HHHHHHHcCCCcCeeCCC----CCCccCCHHHHHHHHHHhCC
Confidence 44555422 236788986 77655 45789999876443
No 154
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=40.70 E-value=32 Score=26.42 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=40.3
Q ss_pred hhhccccCCCCCCCCCCccCcC-cHHHHHhhCCCCCccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 019539 128 AESLELPCKYYHLGCPEIFPYY-SKLKHEVMCTFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKV 191 (339)
Q Consensus 128 l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 191 (339)
...-.+.|.. |...+... .+..|+..= -+|+.|+. |+... ....|..|++..|.+
T Consensus 70 ~~~~~~~C~~----C~k~f~~~~~l~~H~~~H-~~~~~C~~----C~k~f~~~~~l~~H~~~h~~~ 126 (129)
T 2wbt_A 70 KAISQFVCPL----CLMPFSSSVSLKQHIRYT-EHTKVCPV----CKKEFTSTDSALDHVCKKHNI 126 (129)
T ss_dssp HHHCSEECTT----TCCEESSHHHHHHHHHHT-CCCCBCTT----TCCBCSSHHHHHHHHHHTTCC
T ss_pred CCCCCeECCC----CCcccCCHhHHHHHHHHC-CCCCCCCC----CCcccCCHHHHHHHHHHHCCc
Confidence 3445677876 88777654 467887654 67889986 77766 457899999988876
No 155
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=40.08 E-value=8.5 Score=30.56 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=33.4
Q ss_pred CeeeecccCccCcc--cceeccCCceecccccccc-CC--CCCCccccccc
Q 019539 73 ELLECPVCTNSMYP--PIHQCHNGHTLCSTCKTRV-HN--RCPTCRQELGD 118 (339)
Q Consensus 73 ~~l~CpIC~~~l~~--Pi~qC~~GH~fC~~C~~~~-~~--~CP~Cr~~~~~ 118 (339)
+-|.|..|...|.. ..+.=..|.++|..|..+. .. +|..|..+|..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 45789999999963 2232345899999998764 24 79999888764
No 156
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=39.85 E-value=20 Score=26.70 Aligned_cols=34 Identities=32% Similarity=0.794 Sum_probs=24.4
Q ss_pred CCCeeeecccCccCcccc--eeccC-Cceeccccccc
Q 019539 71 VHELLECPVCTNSMYPPI--HQCHN-GHTLCSTCKTR 104 (339)
Q Consensus 71 l~~~l~CpIC~~~l~~Pi--~qC~~-GH~fC~~C~~~ 104 (339)
..+.-.|.+|...|..-. ..|-+ |.+||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 345567999999987432 34432 99999999864
No 157
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=39.79 E-value=12 Score=26.20 Aligned_cols=31 Identities=23% Similarity=0.648 Sum_probs=22.0
Q ss_pred CccCCCCeeeecccCccCcccceeccCCceecc--ccc
Q 019539 67 PATSVHELLECPVCTNSMYPPIHQCHNGHTLCS--TCK 102 (339)
Q Consensus 67 ~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~--~C~ 102 (339)
+...+.+.|.||+|...|..-. |.++|. .|.
T Consensus 3 ~d~~lL~iL~CP~c~~~L~~~~-----~~L~C~~~~c~ 35 (56)
T 2kpi_A 3 LEAGLLEILACPACHAPLEERD-----AELICTGQDCG 35 (56)
T ss_dssp CCCSCTTSCCCSSSCSCEEEET-----TEEEECSSSCC
T ss_pred CCHHHHhheeCCCCCCcceecC-----CEEEcCCcCCC
Confidence 4567889999999999765311 666666 564
No 158
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=39.74 E-value=12 Score=31.41 Aligned_cols=45 Identities=13% Similarity=0.377 Sum_probs=34.3
Q ss_pred CCeeeecccCccCcccceeccCCceecccccccc-CCCCCCcccccc
Q 019539 72 HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV-HNRCPTCRQELG 117 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~-~~~CP~Cr~~~~ 117 (339)
.+-|.|..|...|..-.+ -..|..+|..|..+. ..+|..|..+|.
T Consensus 31 ~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIP 76 (169)
T ss_dssp TTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCC
T ss_pred cccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccC
Confidence 456889999998876444 356899999998764 468999988764
No 159
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=39.43 E-value=15 Score=29.73 Aligned_cols=33 Identities=24% Similarity=0.827 Sum_probs=24.1
Q ss_pred CCeeeecccCccCcccc--eecc-CCceeccccccc
Q 019539 72 HELLECPVCTNSMYPPI--HQCH-NGHTLCSTCKTR 104 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~Pi--~qC~-~GH~fC~~C~~~ 104 (339)
.+.-.|.+|...|..-. ..|- +|.+||+.|...
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34557999999987432 4453 299999999765
No 160
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=39.05 E-value=13 Score=35.98 Aligned_cols=57 Identities=19% Similarity=0.416 Sum_probs=38.6
Q ss_pred CeeeecccCccCcccc--eeccCCceecccccccc-------CCCCCCccccccc---chhhHHHHHhhhc
Q 019539 73 ELLECPVCTNSMYPPI--HQCHNGHTLCSTCKTRV-------HNRCPTCRQELGD---IRCLALEKVAESL 131 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi--~qC~~GH~fC~~C~~~~-------~~~CP~Cr~~~~~---~r~~alek~l~~l 131 (339)
-.|.||+=...|..|+ ..| -|+-|-.-..-+ ...||.|.+.+.. .-+..+.++++.+
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C--~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINC--KHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTC--CSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred EeecCCCccccccccCcCCcC--CCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 3578999999999998 467 898665442111 2579999987753 3455566666543
No 161
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=38.56 E-value=25 Score=24.10 Aligned_cols=45 Identities=22% Similarity=0.390 Sum_probs=26.4
Q ss_pred CCCccCcC-cHHHHHhh-CCCCCccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 019539 142 CPEIFPYY-SKLKHEVM-CTFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHK 190 (339)
Q Consensus 142 C~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 190 (339)
|...+... .+..|+.. -.-+|+.|+. |+... ....|..|++..+.
T Consensus 20 C~k~f~~~~~L~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~~ 67 (72)
T 1x6e_A 20 CGKAFSRSSILVQHQRVHTGEKPYKCLE----CGKAFSQNSGLINHQRIHTS 67 (72)
T ss_dssp SCCEESSHHHHHHHHHGGGCSCCEECSS----SCCEESSHHHHHHHHHHHHS
T ss_pred CCCccCCHHHHHHHHHhcCCCCCeECCC----CCcccCCHHHHHHHHHhcCC
Confidence 44444332 34455432 2246788986 77665 45789999876543
No 162
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=38.47 E-value=10 Score=27.75 Aligned_cols=33 Identities=15% Similarity=0.440 Sum_probs=21.4
Q ss_pred ccCCCCeeeecccCccCcccceeccCCceecccccc
Q 019539 68 ATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKT 103 (339)
Q Consensus 68 ~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~ 103 (339)
...+.+.|.||+|...|.--. ..|-++|..|..
T Consensus 2 d~~LLeiL~CP~ck~~L~~~~---~~~~LiC~~cg~ 34 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKLSA---DKTELISKGAGL 34 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEECT---TSSEEEETTTTE
T ss_pred ChHHHhheeCCCCCCcCeEeC---CCCEEEcCCCCc
Confidence 346788999999998776321 135666666643
No 163
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=38.06 E-value=5.7 Score=34.06 Aligned_cols=46 Identities=24% Similarity=0.530 Sum_probs=33.7
Q ss_pred CCeeeecccCccCcc--cceeccCCceeccccccccC-C--CCCCcccccc
Q 019539 72 HELLECPVCTNSMYP--PIHQCHNGHTLCSTCKTRVH-N--RCPTCRQELG 117 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~--Pi~qC~~GH~fC~~C~~~~~-~--~CP~Cr~~~~ 117 (339)
.+-|.|..|...|.. ..+.-..|..+|..|..+.. . .|..|.+++.
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 356889999998875 23334568999999987652 3 5999988774
No 164
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=37.40 E-value=37 Score=23.63 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=21.0
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhhcCCCCc
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRDDHKVDM 193 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~~ 193 (339)
+++.|+. |+... ....|..|++..|....
T Consensus 46 ~~~~C~~----C~~~f~~~~~L~~H~~~h~~~~~ 75 (86)
T 1x6h_A 46 AAFVCSK----CGKTFTRRNTMARHADNCAGPDG 75 (86)
T ss_dssp CCEECSS----SCCEESCHHHHHHHHHHCCCCCS
T ss_pred cceECCC----CCChhCCHHHHHHHHHHccCCCC
Confidence 5688886 77655 45789999988776643
No 165
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=37.07 E-value=35 Score=23.48 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=27.6
Q ss_pred CCCCccCcC-cHHHHHh-hC-CCCCccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 019539 141 GCPEIFPYY-SKLKHEV-MC-TFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHK 190 (339)
Q Consensus 141 GC~~~~~~~-~~~~He~-~C-~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 190 (339)
+|...+... .+..|+. .- .-+++.|+.++ |+... ....|..|++..+.
T Consensus 14 ~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~--C~k~f~~~~~L~~H~~~H~~ 65 (79)
T 2dlk_A 14 GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPA--CGKSFNFKKHLKEHMKLHSD 65 (79)
T ss_dssp TTCCEESSHHHHHHHHHHGGGSCCCEECSCTT--TCCEESSHHHHHHHHHHHHT
T ss_pred CCcCccCCHHHHHHHHHHHhCCCCCeECCCCC--CcCccCCHHHHHHHHHHhCC
Confidence 466555443 3556654 22 34677887643 66655 45678888775443
No 166
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.28 E-value=66 Score=23.14 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=29.6
Q ss_pred eeeecccCccCcccceeccCCceeccccccccCCCCCCccc
Q 019539 74 LLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQ 114 (339)
Q Consensus 74 ~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~~~CP~Cr~ 114 (339)
.-.|..|..-+.-+.++|.+|..||..=+..-...|+..-+
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk 55 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFK 55 (64)
T ss_dssp SCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCS
T ss_pred CCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchh
Confidence 45799999976655688888999999776543346766544
No 167
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=34.10 E-value=43 Score=22.70 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=30.9
Q ss_pred cccCCCCCCCCCCccCcC-cHHHHHhh-CCCCCccCCCCCCCCcccc-ChhHHHHHhh
Q 019539 132 ELPCKYYHLGCPEIFPYY-SKLKHEVM-CTFRPYNCPYAGSDCSVVG-DIPYLVAHLR 186 (339)
Q Consensus 132 ~v~C~~~~~GC~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~ 186 (339)
.+.|.. .||...+... .+..|+.. -.-+|+.|++. .|+... ....|..|++
T Consensus 17 ~~~C~~--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~--~C~k~f~~~~~l~~H~~ 70 (72)
T 2epa_A 17 SHICSH--PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWK--GCERRFARSDELSRHRR 70 (72)
T ss_dssp CEECSS--TTTCCEESSHHHHHHHHHHHSSSCSEECCCT--TCCCEESSHHHHHHHTT
T ss_pred ceeCCC--CCCccccCCHHHHHHHHHhcCCCCCccCCCC--CCCcccCCHHHHHhHhh
Confidence 345554 3677666543 45667642 34578889753 277765 4568888865
No 168
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=33.97 E-value=71 Score=23.63 Aligned_cols=40 Identities=18% Similarity=0.406 Sum_probs=27.9
Q ss_pred eeeecccCccCcccceeccCCceeccccccccCCCCCCcc
Q 019539 74 LLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCR 113 (339)
Q Consensus 74 ~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~~~CP~Cr 113 (339)
.-.|..|..-+.-..++|.+|..||+.=+..-...|+..-
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~e~H~C~fDy 64 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDY 64 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCCG
T ss_pred CCcChhhCCcccccCeecCCCCEechhcCCCccCCCcchh
Confidence 3469999987554348888899999976543334676543
No 169
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=33.74 E-value=23 Score=25.66 Aligned_cols=29 Identities=21% Similarity=0.667 Sum_probs=21.5
Q ss_pred eecccCccCcccc--eeccC-Cceeccccccc
Q 019539 76 ECPVCTNSMYPPI--HQCHN-GHTLCSTCKTR 104 (339)
Q Consensus 76 ~CpIC~~~l~~Pi--~qC~~-GH~fC~~C~~~ 104 (339)
.|.+|...|..-. ..|-. |.+||+.|...
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 6999999887432 34432 99999999764
No 170
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.73 E-value=15 Score=25.97 Aligned_cols=33 Identities=18% Similarity=0.484 Sum_probs=24.1
Q ss_pred CeeeecccCccCcccceeccCCceecccccccc
Q 019539 73 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 105 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~ 105 (339)
+=|.|..|...|....+.-.+|.++|..|..++
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 34 DCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCCEECSSSEECHHHHHTC
T ss_pred ccCEeccCCCcCCCCccEeECCEEEChhHcCcc
Confidence 457899999888754443356889999888764
No 171
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.59 E-value=14 Score=25.78 Aligned_cols=33 Identities=15% Similarity=0.463 Sum_probs=22.6
Q ss_pred CeeeecccCccCcccceeccCCceecccccccc
Q 019539 73 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 105 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~ 105 (339)
+-|.|..|...|....+.-.+|.++|..|..++
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 457788888888654443345788888887654
No 172
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.24 E-value=64 Score=21.96 Aligned_cols=45 Identities=24% Similarity=0.442 Sum_probs=26.7
Q ss_pred CCCccCcC-cHHHHHhh-CCCCCccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 019539 142 CPEIFPYY-SKLKHEVM-CTFRPYNCPYAGSDCSVVG-DIPYLVAHLRDDHK 190 (339)
Q Consensus 142 C~~~~~~~-~~~~He~~-C~f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 190 (339)
|...+... .+..|+.. -.-+++.|+. |+... ....|..|++..+.
T Consensus 23 C~k~f~~~~~l~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~H~~ 70 (74)
T 2lce_A 23 CQASFRYKGNLASHKTVHTGEKPYRCNI----CGAQFNRPANLKTHTRIHSG 70 (74)
T ss_dssp SSCCBSCHHHHHHHHHHHCCCCSEECTT----TCCEESCHHHHHHHHHHHCC
T ss_pred CCceeCCHHHHHHHHHHcCCCCCEECCC----CCchhCCHHHHHHHHHhcCC
Confidence 54444332 34455532 2346788986 77665 45789999876443
No 173
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=33.05 E-value=26 Score=24.58 Aligned_cols=53 Identities=28% Similarity=0.666 Sum_probs=33.4
Q ss_pred ccCCCCCCCCCCccCcC-cHHHHHhh----CC----CCCccCCCCCCCCcccc-ChhHHHHHhhhcC
Q 019539 133 LPCKYYHLGCPEIFPYY-SKLKHEVM----CT----FRPYNCPYAGSDCSVVG-DIPYLVAHLRDDH 189 (339)
Q Consensus 133 v~C~~~~~GC~~~~~~~-~~~~He~~----C~----f~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H 189 (339)
+.|.. .+|...+.-. ++.+|... -. -.++.|...+ |++.+ ....|..|++.+|
T Consensus 2 l~C~W--~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~--C~~~~~~~~~L~~Hir~~H 64 (64)
T 1zw8_A 2 LKCKW--KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWED--CDFLGDDTASIVNHINAQH 64 (64)
T ss_dssp CCCCC--TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSS--CCCEESSHHHHHHHHHHHC
T ss_pred CeEee--CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCC--CcCCCCChHHHHhhccccC
Confidence 34555 3677665543 35567421 11 1368898754 88876 4579999999887
No 174
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=32.74 E-value=18 Score=26.93 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=8.5
Q ss_pred CeeeecccCcc
Q 019539 73 ELLECPVCTNS 83 (339)
Q Consensus 73 ~~l~CpIC~~~ 83 (339)
....||||..-
T Consensus 16 ~tWVCpICsfs 26 (76)
T 2j9u_B 16 STWVCPICMVS 26 (76)
T ss_dssp EEEECTTTCCE
T ss_pred cceECcccccc
Confidence 57889999843
No 175
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=31.83 E-value=19 Score=34.54 Aligned_cols=56 Identities=20% Similarity=0.353 Sum_probs=38.1
Q ss_pred CeeeecccCccCcccc--eeccCCceecccccccc-------CCCCCCccccccc---chhhHHHHHhhh
Q 019539 73 ELLECPVCTNSMYPPI--HQCHNGHTLCSTCKTRV-------HNRCPTCRQELGD---IRCLALEKVAES 130 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi--~qC~~GH~fC~~C~~~~-------~~~CP~Cr~~~~~---~r~~alek~l~~ 130 (339)
-.|.||+=...+..|+ ..| -|+-|-.-..-+ ...||.|.+.+.. .-+..+.+++.+
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C--~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTC--THLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTC--CCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCC--CCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 3578999999999998 467 898665433211 2579999998753 345556666654
No 176
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=31.04 E-value=34 Score=25.83 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=23.1
Q ss_pred CeeeecccCccCcccc--eeccC-Cceeccccccc
Q 019539 73 ELLECPVCTNSMYPPI--HQCHN-GHTLCSTCKTR 104 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi--~qC~~-GH~fC~~C~~~ 104 (339)
+.-.|.+|...|..-. ..|-+ |.+||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4457999999887432 34432 99999999764
No 177
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=31.01 E-value=26 Score=26.54 Aligned_cols=33 Identities=27% Similarity=0.657 Sum_probs=23.8
Q ss_pred CCeeeecccCccCcccc--eeccC-Cceeccccccc
Q 019539 72 HELLECPVCTNSMYPPI--HQCHN-GHTLCSTCKTR 104 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~Pi--~qC~~-GH~fC~~C~~~ 104 (339)
.+.-.|.+|...|..-. ..|.+ |.+||..|...
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 34567999999887322 44442 99999999875
No 178
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=30.72 E-value=54 Score=17.87 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=16.8
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhh
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRD 187 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 187 (339)
+|+.|+.. .|+... ....|..|++.
T Consensus 1 kp~~C~~~--~C~k~f~~~~~L~~H~~~ 26 (31)
T 1sp2_A 1 RPFMCTWS--YCGKRFTRSDELQRHKRT 26 (31)
T ss_dssp CCCBCCST--TCCCBCSSHHHHHHHHTT
T ss_pred CCcCCcCC--CCCcccCCHhHHHHHHHH
Confidence 46778742 277765 45689999865
No 179
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=30.40 E-value=22 Score=27.80 Aligned_cols=18 Identities=17% Similarity=0.205 Sum_probs=14.9
Q ss_pred ccCCCCeeeecccCccCc
Q 019539 68 ATSVHELLECPVCTNSMY 85 (339)
Q Consensus 68 ~~~l~~~l~CpIC~~~l~ 85 (339)
...+.+.|.||+|...+.
T Consensus 2 d~~LLdILaCP~cK~pL~ 19 (97)
T 2k5r_A 2 DRKLLHLLCSPDTRQPLS 19 (97)
T ss_dssp CTTTCSSCCCCTTSSCCE
T ss_pred ChHHhhheECCCCCCccc
Confidence 456889999999998765
No 180
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=30.03 E-value=58 Score=24.45 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=48.2
Q ss_pred CCCC--CcccccccchhhHHHHHh-hhccccCCCCCCCCCCccCcC-cHHHHHhhC-CCCCccCCCCCCCCcccc-ChhH
Q 019539 107 NRCP--TCRQELGDIRCLALEKVA-ESLELPCKYYHLGCPEIFPYY-SKLKHEVMC-TFRPYNCPYAGSDCSVVG-DIPY 180 (339)
Q Consensus 107 ~~CP--~Cr~~~~~~r~~alek~l-~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C-~f~p~~CP~~g~~C~~~g-~~~~ 180 (339)
..|| .|...+.....+..-... ..-.+.|+. |...+... .+..|+..- .-+++.|+.. .|+... ....
T Consensus 6 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~ 79 (124)
T 1ubd_C 6 IACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAE----CGKAFVESSKLKRHQLVHTGEKPFQCTFE--GCGKRFSLDFN 79 (124)
T ss_dssp EECCSTTCCCEESSHHHHHHHHGGGSCCCEECTT----TCCEESSHHHHHHHGGGTSCCCCEECCST--TCCCEESCHHH
T ss_pred ccCCCCCCcCccCCHHHHHHHHHHcCCCCeECCC----CCchhCCHHHHHHHHHHcCCCCCeeCCCC--CCcCccCCHHH
Confidence 3588 898877643332211111 234466765 88776654 567887643 3467899863 377766 4578
Q ss_pred HHHHhhhcCCC
Q 019539 181 LVAHLRDDHKV 191 (339)
Q Consensus 181 L~~Hl~~~H~~ 191 (339)
|..|++..+..
T Consensus 80 l~~H~~~h~~~ 90 (124)
T 1ubd_C 80 LRTHVRIHTGD 90 (124)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHhCCC
Confidence 99998865544
No 181
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=29.86 E-value=21 Score=33.50 Aligned_cols=44 Identities=23% Similarity=0.563 Sum_probs=30.2
Q ss_pred CCeeeecccCccCccccee---ccCC--ceeccccccccC---CCCCCcccc
Q 019539 72 HELLECPVCTNSMYPPIHQ---CHNG--HTLCSTCKTRVH---NRCPTCRQE 115 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~Pi~q---C~~G--H~fC~~C~~~~~---~~CP~Cr~~ 115 (339)
...-.||||.....--++. =..| +..|+.|-..|. .+||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3456799999876644432 1236 579999988773 689999664
No 182
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=29.47 E-value=14 Score=26.70 Aligned_cols=42 Identities=14% Similarity=0.331 Sum_probs=23.4
Q ss_pred CCeeeecccCccCcccceeccCCceecccccccc-CCCCCCcc
Q 019539 72 HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV-HNRCPTCR 113 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~-~~~CP~Cr 113 (339)
.+=|.|..|...|..-.+.-.+|.++|..|..++ ..+|--|.
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg 74 (81)
T 1a7i_A 32 RCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYG 74 (81)
T ss_dssp SSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC-------
T ss_pred cccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccC
Confidence 3557788888887654333345788888887664 34555553
No 183
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=29.12 E-value=51 Score=17.32 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=16.3
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhhc
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRDD 188 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~ 188 (339)
+|+.|+. |+... ....|..|.+..
T Consensus 1 k~~~C~~----C~~~f~~~~~l~~H~~~h 25 (29)
T 1ard_A 1 RSFVCEV----CTRAFARQEHLKRHYRSH 25 (29)
T ss_dssp CCCBCTT----TCCBCSSHHHHHHHHHHH
T ss_pred CCeECCC----CCcccCCHHHHHHHHHHh
Confidence 3677875 66655 456888998753
No 184
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=29.00 E-value=28 Score=28.10 Aligned_cols=42 Identities=21% Similarity=0.593 Sum_probs=26.7
Q ss_pred CeeeecccCccCcccc--eeccC-CceeccccccccC---CCCCCccc
Q 019539 73 ELLECPVCTNSMYPPI--HQCHN-GHTLCSTCKTRVH---NRCPTCRQ 114 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi--~qC~~-GH~fC~~C~~~~~---~~CP~Cr~ 114 (339)
+...|..|...|..-. ..|-+ |.+||+.|..+.. ..|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 4457999999987542 44432 9999999987531 34555543
No 185
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.91 E-value=28 Score=25.06 Aligned_cols=34 Identities=21% Similarity=0.561 Sum_probs=25.2
Q ss_pred CCeeeecccCccCcccceeccCCceecccccccc
Q 019539 72 HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 105 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~ 105 (339)
.+=|.|..|...|..-.+.-.+|.++|..|..+.
T Consensus 41 ~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~ 74 (82)
T 2ehe_A 41 EGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSA 74 (82)
T ss_dssp TTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCC
T ss_pred ccCCeecCCCCccCCCccEeeCCEEECHHHHhhh
Confidence 3568899999998854443445899999998764
No 186
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=28.57 E-value=75 Score=22.93 Aligned_cols=46 Identities=26% Similarity=0.517 Sum_probs=26.3
Q ss_pred CCCCeeeecccCccCcccceeccC---C-ceecccccccc-----CCCCCCccccc
Q 019539 70 SVHELLECPVCTNSMYPPIHQCHN---G-HTLCSTCKTRV-----HNRCPTCRQEL 116 (339)
Q Consensus 70 ~l~~~l~CpIC~~~l~~Pi~qC~~---G-H~fC~~C~~~~-----~~~CP~Cr~~~ 116 (339)
+..+...| +|..+-...+++|.+ . ..|=..|+.-. .-.||.|+...
T Consensus 12 d~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 12 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CTTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 34566678 899876666677764 1 22333444311 13588886643
No 187
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=28.33 E-value=41 Score=17.79 Aligned_cols=25 Identities=32% Similarity=0.810 Sum_probs=16.7
Q ss_pred CccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 019539 162 PYNCPYAGSDCSVVG-DIPYLVAHLRDDHK 190 (339)
Q Consensus 162 p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 190 (339)
|+.|+. |+... ....|..|.+..|.
T Consensus 2 ~~~C~~----C~k~f~~~~~l~~H~~~h~~ 27 (30)
T 1klr_A 2 TYQCQY----CEFRSADSSNLKTHIKTKHS 27 (30)
T ss_dssp CCCCSS----SSCCCSCSHHHHHHHHHHTS
T ss_pred CccCCC----CCCccCCHHHHHHHHHHHcc
Confidence 567775 66554 44688899876554
No 188
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=28.21 E-value=51 Score=17.56 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=16.8
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRDDHK 190 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 190 (339)
+|+.|+. |+... ....|..|+...|.
T Consensus 1 k~~~C~~----C~k~f~~~~~l~~H~~~~H~ 27 (30)
T 1paa_A 1 KAYACGL----CNRAFTRRDLLIRHAQKIHS 27 (30)
T ss_dssp CCSBCTT----TCCBCSSSHHHHHHHTTTSC
T ss_pred CCcCCcc----cCcccCChHHHHHHHHHHcc
Confidence 3677875 66654 45688899655554
No 189
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.13 E-value=22 Score=25.33 Aligned_cols=32 Identities=28% Similarity=0.708 Sum_probs=18.6
Q ss_pred CeeeecccCccCcccceeccCCceecc-ccccc
Q 019539 73 ELLECPVCTNSMYPPIHQCHNGHTLCS-TCKTR 104 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~-~C~~~ 104 (339)
+=|.|..|...|..-.+.-.+|.++|. .|..+
T Consensus 35 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~ 67 (76)
T 2cu8_A 35 FCLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT 67 (76)
T ss_dssp TTCBCSSSCCBCCTTSCEEETTEEECTTTHHHH
T ss_pred CCCCCCCCCCccCCCceEeECCEEecchHHHHH
Confidence 346677777776643322334677777 57654
No 190
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.75 E-value=20 Score=24.93 Aligned_cols=33 Identities=12% Similarity=0.409 Sum_probs=20.3
Q ss_pred CeeeecccCccCcccceeccCCceecccccccc
Q 019539 73 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 105 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~ 105 (339)
+=|.|..|...|....+.=.+|.++|..|..++
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNF 62 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHH
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHH
Confidence 446677777777644333344777777776553
No 191
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.63 E-value=15 Score=25.35 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=20.0
Q ss_pred CeeeecccCccCcccceeccCCceeccccccc
Q 019539 73 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTR 104 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~ 104 (339)
+=|.|..|...|....+.=..|.++|..|..+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 30 EHFVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61 (66)
T ss_dssp TTCBCTTTCCBCSSSCCEEETTEEECHHHHHH
T ss_pred CcCEECCCCCCCCCCceEeECCcEECHHHHHH
Confidence 44677777777765433334477777777654
No 192
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=27.58 E-value=62 Score=18.43 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=17.3
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhhc
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRDD 188 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~ 188 (339)
+|+.|+. |+... ....|..|.+..
T Consensus 10 k~~~C~~----C~k~f~~~~~l~~H~~~H 34 (37)
T 1p7a_A 10 KPFQCPD----CDRSFSRSDHLALHRKRH 34 (37)
T ss_dssp SSBCCTT----TCCCBSSHHHHHHHHGGG
T ss_pred CCccCCC----CCcccCcHHHHHHHHHHh
Confidence 6788986 76655 457889997653
No 193
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=27.56 E-value=13 Score=35.78 Aligned_cols=17 Identities=6% Similarity=0.110 Sum_probs=10.2
Q ss_pred cCCCCCCCCCCccCcCc
Q 019539 134 PCKYYHLGCPEIFPYYS 150 (339)
Q Consensus 134 ~C~~~~~GC~~~~~~~~ 150 (339)
-|.---+|+...+++-+
T Consensus 114 ~~~rGGyga~rlLp~LD 130 (371)
T 3tla_A 114 MSTIGGDNSNSLLPFLD 130 (371)
T ss_dssp EESCCCSCGGGGGGGSC
T ss_pred EEccccccHHHHHhhcC
Confidence 45445567777766654
No 194
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=27.53 E-value=24 Score=30.09 Aligned_cols=37 Identities=27% Similarity=0.667 Sum_probs=17.9
Q ss_pred eeeecccCccCccc-ceeccCCceeccccccccCCCCCCccccc
Q 019539 74 LLECPVCTNSMYPP-IHQCHNGHTLCSTCKTRVHNRCPTCRQEL 116 (339)
Q Consensus 74 ~l~CpIC~~~l~~P-i~qC~~GH~fC~~C~~~~~~~CP~Cr~~~ 116 (339)
.-.|..|.+.+.+. .+. ..|..+-..|+ +|-.|+.+|
T Consensus 115 ~~~C~~C~~~I~~~~~v~-a~~~~~H~~CF-----~C~~C~~~L 152 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVI-GAGKSWHKSCF-----RCAKCGKSL 152 (192)
T ss_dssp CEECTTTSCEECSSSCEE-ETTEEECTTTC-----BCTTTCCBC
T ss_pred CCcCCCCCCEecCcEEEe-cCCCccchhcC-----CccccCCCC
Confidence 34577777766532 222 22444444442 355555554
No 195
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=27.13 E-value=40 Score=23.24 Aligned_cols=29 Identities=17% Similarity=0.547 Sum_probs=22.0
Q ss_pred cCCCCeeeecccCccCcccceeccCCceeccccccc
Q 019539 69 TSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTR 104 (339)
Q Consensus 69 ~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~ 104 (339)
+..++..+|+-|. -+.+| -+.+|..|..-
T Consensus 6 ~~~eD~WkC~~C~-k~N~P------l~ryC~rCwaL 34 (53)
T 2cr8_A 6 SGSEDEWQCTECK-KFNSP------SKRYCFRCWAL 34 (53)
T ss_dssp SCCSCCEECSSSC-CEECS------SCCBCTTTCCB
T ss_pred CCCcceeeccccc-ccCCC------ccchhHHHHHh
Confidence 3478899999999 56666 45678888753
No 196
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=26.94 E-value=16 Score=26.10 Aligned_cols=30 Identities=17% Similarity=0.515 Sum_probs=16.0
Q ss_pred eeeecccCccCcccceeccCCceecccccc
Q 019539 74 LLECPVCTNSMYPPIHQCHNGHTLCSTCKT 103 (339)
Q Consensus 74 ~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~ 103 (339)
=|.|..|...|....+.=.+|.++|..|..
T Consensus 46 CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~ 75 (77)
T 2egq_A 46 CFHCKKCSVNLANKRFVFHQEQVYCPDCAK 75 (77)
T ss_dssp TCBCSSSCCBCTTSCCCEETTEECCHHHHH
T ss_pred cCEehhcCCCCCCCccEeECCEEEChHHhc
Confidence 356666666665432222335666666653
No 197
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.81 E-value=30 Score=30.31 Aligned_cols=31 Identities=26% Similarity=0.668 Sum_probs=23.0
Q ss_pred eeeecccCccCcccc--eeccC-Cceeccccccc
Q 019539 74 LLECPVCTNSMYPPI--HQCHN-GHTLCSTCKTR 104 (339)
Q Consensus 74 ~l~CpIC~~~l~~Pi--~qC~~-GH~fC~~C~~~ 104 (339)
.-.|++|...|..-. ..|.+ |++||+.|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 358999999987432 44542 99999999765
No 198
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.77 E-value=45 Score=17.55 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=15.9
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhh
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRD 187 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 187 (339)
+|+.|+. |+... ....|..|.+.
T Consensus 2 k~~~C~~----C~k~f~~~~~l~~H~~~ 25 (28)
T 2kvf_A 2 RPYSCSV----CGKRFSLKHQMETHYRV 25 (28)
T ss_dssp CSEECSS----SCCEESCHHHHHHHHTT
T ss_pred cCccCCC----CCcccCCHHHHHHHHHh
Confidence 4677875 76654 45688888764
No 199
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.70 E-value=19 Score=25.19 Aligned_cols=33 Identities=12% Similarity=0.383 Sum_probs=20.1
Q ss_pred CeeeecccCccCcccceeccCCceecccccccc
Q 019539 73 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 105 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~ 105 (339)
+=|.|..|...|..-.+.-.+|.++|..|..+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1x4k_A 32 TCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQ 64 (72)
T ss_dssp TTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHH
T ss_pred cCCcccccCCccCCCccCccCCeEECHHHHhHH
Confidence 346677777777654333345777777776553
No 200
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.63 E-value=24 Score=26.14 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=15.8
Q ss_pred eeeecccCccCcccceeccCCceeccccccc
Q 019539 74 LLECPVCTNSMYPPIHQCHNGHTLCSTCKTR 104 (339)
Q Consensus 74 ~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~ 104 (339)
-|.|..|...|..-.+.=.+|.++|..|..+
T Consensus 51 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~ 81 (90)
T 2dar_A 51 EFNCAHCKNTMAYIGFVEEKGALYCELCYEK 81 (90)
T ss_dssp TCBCSSSCCBCSSSCBEESSSCEECHHHHHH
T ss_pred CCccCCCCCCCCCCEeEeECCEEECHHHHHH
Confidence 3556666665553322223455666666544
No 201
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.51 E-value=21 Score=25.00 Aligned_cols=33 Identities=15% Similarity=0.367 Sum_probs=21.9
Q ss_pred CeeeecccCccCcccceeccCCceecccccccc
Q 019539 73 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 105 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~ 105 (339)
+=|.|..|...|..-.+.-.+|.++|..|..+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 32 HCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENK 64 (72)
T ss_dssp TTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHH
T ss_pred ccCeECCCCCcCCCCccCCcCCeEECHHHHHHH
Confidence 457788888877754333345788888887654
No 202
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=26.28 E-value=14 Score=34.28 Aligned_cols=16 Identities=19% Similarity=0.056 Sum_probs=13.4
Q ss_pred cChhHHHHHhhhcCCC
Q 019539 176 GDIPYLVAHLRDDHKV 191 (339)
Q Consensus 176 g~~~~L~~Hl~~~H~~ 191 (339)
.+.++.+.||-.+|+.
T Consensus 117 Is~KdYY~~Lf~~~k~ 132 (379)
T 3uau_A 117 ISIKEYYNDLFKNQKS 132 (379)
T ss_dssp EEHHHHHHHHHHHCSE
T ss_pred eeHHHHHHHHHhhccc
Confidence 3678999999999986
No 203
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=26.08 E-value=20 Score=24.83 Aligned_cols=32 Identities=25% Similarity=0.596 Sum_probs=20.8
Q ss_pred CeeeecccCccCcccceeccCCceec-cccccc
Q 019539 73 ELLECPVCTNSMYPPIHQCHNGHTLC-STCKTR 104 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi~qC~~GH~fC-~~C~~~ 104 (339)
+=|.|..|...|..-.+.=..|.++| ..|..+
T Consensus 31 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k 63 (65)
T 2iyb_E 31 ECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 63 (65)
T ss_dssp TTSBCTTTCCBCTTSCCEEETTEEESSHHHHHT
T ss_pred CCEECCCCCCcCCCCceEEECCEEecCHHHhhh
Confidence 55778888888764433334477888 777654
No 204
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.55 E-value=53 Score=18.32 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=18.1
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhhcC
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRDDH 189 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H 189 (339)
+|+.|+. |+... ....|..|.+..+
T Consensus 6 k~~~C~~----C~k~f~~~~~L~~H~~~h~ 31 (35)
T 2elx_A 6 SGYVCAL----CLKKFVSSIRLRSHIREVH 31 (35)
T ss_dssp CSEECSS----SCCEESSHHHHHHHHHHTS
T ss_pred CCeECCC----CcchhCCHHHHHHHHHHHc
Confidence 5788886 76655 4578999987644
No 205
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=25.52 E-value=1.1e+02 Score=23.12 Aligned_cols=39 Identities=15% Similarity=0.443 Sum_probs=27.6
Q ss_pred eeeecccCccCccc-ceeccCCceeccccccccCCCCCCc
Q 019539 74 LLECPVCTNSMYPP-IHQCHNGHTLCSTCKTRVHNRCPTC 112 (339)
Q Consensus 74 ~l~CpIC~~~l~~P-i~qC~~GH~fC~~C~~~~~~~CP~C 112 (339)
.-.|..|..-+.-- -++|.+|..||+.=+-.-...|+..
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrCg~~FC~~HRy~e~H~C~fD 64 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYD 64 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTCCEECTTTCSTGGGTCCSC
T ss_pred CccchhhCCeecccCCeEcCCCCEecccCCCccCCCCcch
Confidence 45799999866541 3788889999997764433467764
No 206
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.99 E-value=20 Score=25.08 Aligned_cols=32 Identities=25% Similarity=0.598 Sum_probs=19.5
Q ss_pred CeeeecccCccCcccceeccCCceeccccccc
Q 019539 73 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTR 104 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~ 104 (339)
+=|.|..|...|..-.+.=.+|.++|..|..+
T Consensus 30 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 61 (70)
T 2d8x_A 30 ECFRCDLCQEVLADIGFVKNAGRHLCRPCHNR 61 (70)
T ss_dssp TTSBCSSSCCBCSSSCCEEETTEEECHHHHHH
T ss_pred cCCEeCCCCCcCCCCccEeECCeEECHHHhhh
Confidence 44677777777765433223477777777654
No 207
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=24.83 E-value=15 Score=32.46 Aligned_cols=8 Identities=13% Similarity=-0.018 Sum_probs=4.1
Q ss_pred CceEEecC
Q 019539 293 DGLIIQRN 300 (339)
Q Consensus 293 d~L~i~~~ 300 (339)
|..+.+..
T Consensus 207 Da~~~~~~ 214 (291)
T 2yjp_A 207 VALAHDNA 214 (291)
T ss_dssp SEEEEEHH
T ss_pred cEEEecHH
Confidence 55555533
No 208
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.78 E-value=24 Score=25.17 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=24.2
Q ss_pred CCeeeecccCccCc-ccceeccCCceecccccccc
Q 019539 72 HELLECPVCTNSMY-PPIHQCHNGHTLCSTCKTRV 105 (339)
Q Consensus 72 ~~~l~CpIC~~~l~-~Pi~qC~~GH~fC~~C~~~~ 105 (339)
.+-|.|..|...|. ...+.=..|.++|..|..++
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 35688999999987 33332234889999998765
No 209
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.47 E-value=52 Score=17.22 Aligned_cols=23 Identities=30% Similarity=0.840 Sum_probs=15.9
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhh
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRD 187 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 187 (339)
+|+.|+. |+... ....|..|.+.
T Consensus 2 k~~~C~~----C~k~f~~~~~l~~H~~~ 25 (27)
T 2kvh_A 2 KPFSCSL----CPQRSRDFSAMTKHLRT 25 (27)
T ss_dssp CCEECSS----SSCEESSHHHHHHHHHH
T ss_pred cCccCCC----cChhhCCHHHHHHHHHH
Confidence 4678875 76654 45688888764
No 210
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=24.37 E-value=46 Score=17.58 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=15.8
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhh
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRD 187 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 187 (339)
+|+.|+. |+... ....|..|++.
T Consensus 1 k~~~C~~----C~k~f~~~~~l~~H~~~ 24 (29)
T 1rik_A 1 YKFACPE----CPKRFMRSDHLTLHILL 24 (29)
T ss_dssp CCEECSS----SSCEESCSHHHHHHHTG
T ss_pred CCccCCC----CCchhCCHHHHHHHHHH
Confidence 4677875 66654 45688889765
No 211
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=24.27 E-value=27 Score=22.23 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=16.9
Q ss_pred cccCCCCCCCCCCccCcCcHHHHHhhCC
Q 019539 132 ELPCKYYHLGCPEIFPYYSKLKHEVMCT 159 (339)
Q Consensus 132 ~v~C~~~~~GC~~~~~~~~~~~He~~C~ 159 (339)
.+.||| -....++..++..|...|.
T Consensus 5 ~v~CPy---d~~H~i~~~~l~~Hl~kC~ 29 (37)
T 2vy4_A 5 VVICPY---DSNHHMPKSSLAKHMASCR 29 (37)
T ss_dssp CEECTT---TSSCEECGGGHHHHHHHHH
T ss_pred EEECCC---CCCeEeCHHHHHHHHHHHh
Confidence 456776 3567777777777776664
No 212
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.95 E-value=41 Score=17.58 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=15.1
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhhc
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRDD 188 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~ 188 (339)
+|+.|+. |+... ....|..|.+..
T Consensus 1 k~~~C~~----C~~~f~~~~~l~~H~~~h 25 (29)
T 2m0e_A 1 KEHKCPH----CDKKFNQVGNLKAHLKIH 25 (29)
T ss_dssp CCCCCSS----CCCCCCTTTHHHHHHHHH
T ss_pred CCCcCCC----CCcccCCHHHHHHHHHHh
Confidence 3667775 65544 345788887653
No 213
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=23.21 E-value=1e+02 Score=26.49 Aligned_cols=43 Identities=21% Similarity=0.522 Sum_probs=25.8
Q ss_pred eecccCccCccc-----ceeccC-Cceecccccccc--------------CCCCCCccccccc
Q 019539 76 ECPVCTNSMYPP-----IHQCHN-GHTLCSTCKTRV--------------HNRCPTCRQELGD 118 (339)
Q Consensus 76 ~CpIC~~~l~~P-----i~qC~~-GH~fC~~C~~~~--------------~~~CP~Cr~~~~~ 118 (339)
.||||..+..+. ++||.. ..-|=..|..-. .-.||.|+..-+.
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 499999987643 568752 223333443210 2479999886553
No 214
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=23.03 E-value=28 Score=29.65 Aligned_cols=43 Identities=14% Similarity=0.332 Sum_probs=32.2
Q ss_pred CCeeeecccCccCcccceeccCCceecccccccc-CCCCCCccc
Q 019539 72 HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV-HNRCPTCRQ 114 (339)
Q Consensus 72 ~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~-~~~CP~Cr~ 114 (339)
.+=|.|..|...|..-.+.-..|.++|..|..+. ..+|..|..
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~ 75 (192)
T 1b8t_A 32 KSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGM 75 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCC
T ss_pred CCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCcccccccc
Confidence 4668899999999865444456999999998765 456766654
No 215
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=22.77 E-value=67 Score=17.96 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=17.9
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhhcC
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRDDH 189 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H 189 (339)
+|+.|+. |+... ....|..|++..+
T Consensus 6 k~~~C~~----C~k~f~~~~~l~~H~~~H~ 31 (35)
T 1srk_A 6 RPFVCRI----CLSAFTTKANCARHLKVHT 31 (35)
T ss_dssp SCEECSS----SCCEESSHHHHHHHHGGGT
T ss_pred cCeeCCC----CCcccCCHHHHHHHHHHcC
Confidence 5788886 77665 4578999987543
No 216
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.60 E-value=72 Score=16.39 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=13.8
Q ss_pred CccCCCCCCCCcccc-ChhHHHHHhhh
Q 019539 162 PYNCPYAGSDCSVVG-DIPYLVAHLRD 187 (339)
Q Consensus 162 p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 187 (339)
|+.|+. |+... ....|..|.+.
T Consensus 1 ~~~C~~----C~k~f~~~~~l~~H~~~ 23 (27)
T 1znf_A 1 XYKCGL----CERSFVEKSALSRHQRV 23 (27)
T ss_dssp -CBCSS----SCCBCSSHHHHHHHGGG
T ss_pred CccCCC----CCCcCCCHHHHHHHHHH
Confidence 456765 66554 45688888764
No 217
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.55 E-value=71 Score=16.70 Aligned_cols=24 Identities=33% Similarity=0.710 Sum_probs=16.5
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhhc
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRDD 188 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~ 188 (339)
+|+.|+. |+... ....|..|.+..
T Consensus 2 k~~~C~~----C~~~f~~~~~l~~H~~~h 26 (30)
T 2m0d_A 2 KPYQCDY----CGRSFSDPTSKMRHLETH 26 (30)
T ss_dssp CCEECTT----TCCEESCHHHHHHHHHTT
T ss_pred cCccCCC----CCcccCCHHHHHHHHHHh
Confidence 4677875 76655 456888998753
No 218
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=22.54 E-value=18 Score=31.89 Aligned_cols=9 Identities=11% Similarity=0.058 Sum_probs=4.9
Q ss_pred CceEEecCc
Q 019539 293 DGLIIQRNM 301 (339)
Q Consensus 293 d~L~i~~~~ 301 (339)
|.++++...
T Consensus 205 Da~i~~~~~ 213 (283)
T 2yln_A 205 DATLNDELA 213 (283)
T ss_dssp CEEEEEHHH
T ss_pred CEEEecHHH
Confidence 566665443
No 219
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=22.37 E-value=98 Score=23.62 Aligned_cols=42 Identities=14% Similarity=0.335 Sum_probs=22.5
Q ss_pred CCeeeecccCccCc-ccceeccC-Cceecccccccc------CCCCCCccc
Q 019539 72 HELLECPVCTNSMY-PPIHQCHN-GHTLCSTCKTRV------HNRCPTCRQ 114 (339)
Q Consensus 72 ~~~l~CpIC~~~l~-~Pi~qC~~-GH~fC~~C~~~~------~~~CP~Cr~ 114 (339)
.+...| ||...-. ..+++|.. ...|=..|+... .-.||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 345667 7877654 34567742 223333343221 146999974
No 220
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.82 E-value=35 Score=24.62 Aligned_cols=32 Identities=16% Similarity=0.548 Sum_probs=21.6
Q ss_pred CeeeecccCccCcccceeccCCceecccccccc
Q 019539 73 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV 105 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~ 105 (339)
+-|.|..|...|..-.+ =.+|.++|..|..+.
T Consensus 40 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~ 71 (79)
T 2cor_A 40 DHFNCANCGKELTADAR-ELKGELYCLPCHDKM 71 (79)
T ss_dssp TTSBCSSSCCBCCTTCE-EETTEEECHHHHHTT
T ss_pred CCCEeCCCCCccCCCCE-eECCEEeCHHHHHHh
Confidence 45778888887775433 335778888887654
No 221
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.79 E-value=67 Score=18.16 Aligned_cols=23 Identities=26% Similarity=0.704 Sum_probs=17.0
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhh
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRD 187 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 187 (339)
+|+.|+. |+... ....|..|++.
T Consensus 8 k~~~C~~----C~k~f~~~~~l~~H~~~ 31 (36)
T 2elq_A 8 KPFKCSL----CEYATRSKSNLKAHMNR 31 (36)
T ss_dssp CSEECSS----SSCEESCHHHHHHHHHH
T ss_pred CCccCCC----CCchhCCHHHHHHHHHH
Confidence 5788886 77665 45788999865
No 222
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.67 E-value=64 Score=18.16 Aligned_cols=24 Identities=42% Similarity=0.832 Sum_probs=17.3
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhhc
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRDD 188 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~ 188 (339)
+|+.|+. |+... ....|..|++..
T Consensus 8 k~~~C~~----C~k~f~~~~~l~~H~~~H 32 (36)
T 2elt_A 8 KPYKCPQ----CSYASAIKANLNVHLRKH 32 (36)
T ss_dssp CSEECSS----SSCEESSHHHHHHHHHHH
T ss_pred CCCCCCC----CCcccCCHHHHHHHHHHc
Confidence 5788886 77665 456899998753
No 223
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.10 E-value=45 Score=29.47 Aligned_cols=30 Identities=27% Similarity=0.748 Sum_probs=22.2
Q ss_pred eeecccCccCcccc--eeccC-Cceeccccccc
Q 019539 75 LECPVCTNSMYPPI--HQCHN-GHTLCSTCKTR 104 (339)
Q Consensus 75 l~CpIC~~~l~~Pi--~qC~~-GH~fC~~C~~~ 104 (339)
-.|.+|...|..-. ..|.+ |.+||..|...
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 37999999887432 44542 99999999764
No 224
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.84 E-value=52 Score=23.84 Aligned_cols=33 Identities=18% Similarity=0.490 Sum_probs=21.8
Q ss_pred CeeeecccCccCcccceec--cCCceecccccccc
Q 019539 73 ELLECPVCTNSMYPPIHQC--HNGHTLCSTCKTRV 105 (339)
Q Consensus 73 ~~l~CpIC~~~l~~Pi~qC--~~GH~fC~~C~~~~ 105 (339)
+=|.|..|...|..-.+.. .+|.++|..|..++
T Consensus 41 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 41 SCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp TTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCC
T ss_pred CcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhh
Confidence 4477888887776544332 35788888887654
No 225
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.80 E-value=42 Score=23.91 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=19.6
Q ss_pred Cceecccccccc-CCCCCCcccccc
Q 019539 94 GHTLCSTCKTRV-HNRCPTCRQELG 117 (339)
Q Consensus 94 GH~fC~~C~~~~-~~~CP~Cr~~~~ 117 (339)
|.++|..|..+. ...|+.|.+++.
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~ 26 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLT 26 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCC
T ss_pred CcEEcHHHHccccCCcCCCCCCEec
Confidence 678999998874 478999988775
No 226
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.70 E-value=54 Score=17.35 Aligned_cols=23 Identities=35% Similarity=0.859 Sum_probs=15.8
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhh
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRD 187 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 187 (339)
+|+.|+. |+... ....|..|.+.
T Consensus 2 k~~~C~~----C~k~f~~~~~l~~H~~~ 25 (27)
T 2kvg_A 2 APYRCPL----CRAGCPSLASMQAHMRG 25 (27)
T ss_dssp CTEEETT----TTEEESCHHHHHHHHTT
T ss_pred cCcCCCC----CCcccCCHHHHHHHHHh
Confidence 4678875 77655 45688888753
No 227
>2g9z_A Thiamine pyrophosphokinase; thiamin-PNP, TPK, thiamin pyrophosphokinase, structural GENO profun, bacterial targets at IGS-CNRS, france, BIGS; HET: VNP; 1.96A {Candida albicans} PDB: 2hh9_A*
Probab=20.70 E-value=23 Score=33.80 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=1.0
Q ss_pred CCCCccccccccccCC
Q 019539 25 HHPPLLHHHQFASSKP 40 (339)
Q Consensus 25 ~~~~~~~~~~~~~~~~ 40 (339)
|||.|.||||+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~ 19 (348)
T 2g9z_A 4 HHHHHGHHHQLSEDSE 19 (348)
T ss_dssp --------------CC
T ss_pred cccccccccccccccc
Confidence 3444556678887554
No 228
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.56 E-value=44 Score=23.94 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=19.7
Q ss_pred CCceeccccccccCCCCCCcccccc
Q 019539 93 NGHTLCSTCKTRVHNRCPTCRQELG 117 (339)
Q Consensus 93 ~GH~fC~~C~~~~~~~CP~Cr~~~~ 117 (339)
.|..+|..|..+....|+.|.+++.
T Consensus 2 ~g~~yC~~~y~~~~~~C~~C~~~I~ 26 (81)
T 2dlo_A 2 SSGSSGEGCYVATLEKCATCSQPIL 26 (81)
T ss_dssp CCCCCCCCCCCSSCCBCTTTCCBCC
T ss_pred cCCEECHHHhhcCCCccccCCCeec
Confidence 3778999998754578999988875
No 229
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.50 E-value=62 Score=20.29 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=19.4
Q ss_pred ccCCCCCCCCcc-ccChhHHHHHhhhcCCC
Q 019539 163 YNCPYAGSDCSV-VGDIPYLVAHLRDDHKV 191 (339)
Q Consensus 163 ~~CP~~g~~C~~-~g~~~~L~~Hl~~~H~~ 191 (339)
+.||. |.. -++.+.|..|.+..|..
T Consensus 6 FiCP~----C~~~l~s~~~L~~Hye~~H~~ 31 (34)
T 3mjh_B 6 FICPQ----CMKSLGSADELFKHYEAVHDA 31 (34)
T ss_dssp EECTT----TCCEESSHHHHHHHHHHHTSS
T ss_pred cCCcH----HHHHcCCHHHHHHHHHhcccc
Confidence 56887 644 34678999999999975
No 230
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.24 E-value=73 Score=18.01 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=17.2
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhhc
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRDD 188 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~ 188 (339)
+|+.|+. |+... ....|..|++..
T Consensus 8 k~~~C~~----C~k~f~~~~~l~~H~~~H 32 (36)
T 2els_A 8 KIFTCEY----CNKVFKFKHSLQAHLRIH 32 (36)
T ss_dssp CCEECTT----TCCEESSHHHHHHHHHHH
T ss_pred CCEECCC----CCceeCCHHHHHHHHHHh
Confidence 5788886 77655 456888998753
No 231
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.21 E-value=95 Score=16.81 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=16.4
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhh
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRD 187 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 187 (339)
+|+.|+.. .|+... ....|..|++.
T Consensus 2 k~~~C~~~--~C~k~f~~~~~L~~H~~~ 27 (32)
T 1zfd_A 2 RPYSCDHP--GCDKAFVRNHDLIRHKKS 27 (32)
T ss_dssp CSBCCCCT--TCCCCBSSSHHHHHHHGG
T ss_pred CCCcCcCC--CCCCccCCHHHHHHHHHH
Confidence 46778742 276654 45688999875
No 232
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=20.12 E-value=80 Score=17.74 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=16.6
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhhc
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRDD 188 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~ 188 (339)
+|+.|+. |+... ....|..|++..
T Consensus 1 kp~~C~~----C~k~F~~~~~L~~H~~~H 25 (33)
T 1rim_A 1 YKFACPE----CPKRFMRSDHLSKHITLH 25 (33)
T ss_dssp CCCCCSS----SCCCCSSHHHHHHHHHHH
T ss_pred CcccCCC----CCchhCCHHHHHHHHHHh
Confidence 4677875 66654 457899998753
No 233
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.10 E-value=61 Score=18.46 Aligned_cols=25 Identities=28% Similarity=0.740 Sum_probs=18.2
Q ss_pred CCccCCCCCCCCcccc-ChhHHHHHhhhcC
Q 019539 161 RPYNCPYAGSDCSVVG-DIPYLVAHLRDDH 189 (339)
Q Consensus 161 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H 189 (339)
+|+.|+. |+... ....|..|.+..+
T Consensus 8 k~~~C~~----C~k~f~~~~~l~~H~~~h~ 33 (37)
T 2elo_A 8 RSYSCPV----CEKSFSEDRLIKSHIKTNH 33 (37)
T ss_dssp CCCEETT----TTEECSSHHHHHHHHHHHC
T ss_pred CCcCCCC----CCCccCCHHHHHHHHHHHc
Confidence 5788886 77765 4578999987644
Done!