Query 019540
Match_columns 339
No_of_seqs 275 out of 1596
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:22:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2da3_A Alpha-fetoprotein enhan 99.7 2.7E-18 9.3E-23 133.1 7.7 62 55-116 15-76 (80)
2 2vi6_A Homeobox protein nanog; 99.7 2.3E-18 7.8E-23 128.1 6.5 60 57-116 3-62 (62)
3 1nk2_P Homeobox protein VND; h 99.7 4.8E-18 1.6E-22 131.7 8.5 64 57-120 9-72 (77)
4 2cue_A Paired box protein PAX6 99.7 5.9E-18 2E-22 132.1 9.1 64 55-118 5-68 (80)
5 2h1k_A IPF-1, pancreatic and d 99.7 3.8E-18 1.3E-22 127.5 7.6 59 57-115 3-61 (63)
6 2cra_A Homeobox protein HOX-B1 99.7 3.1E-18 1.1E-22 130.4 7.0 62 55-116 5-66 (70)
7 2dmt_A Homeobox protein BARH-l 99.7 6.6E-18 2.3E-22 131.8 9.1 61 56-116 16-76 (80)
8 2dmu_A Homeobox protein goosec 99.7 6.3E-18 2.2E-22 128.5 8.4 62 55-116 5-66 (70)
9 1puf_A HOX-1.7, homeobox prote 99.7 1.2E-17 4E-22 129.5 10.0 63 55-117 11-73 (77)
10 2dmq_A LIM/homeobox protein LH 99.7 5.5E-18 1.9E-22 131.8 8.0 64 55-118 5-68 (80)
11 2e1o_A Homeobox protein PRH; D 99.7 6.7E-18 2.3E-22 128.5 8.3 62 55-116 5-66 (70)
12 2kt0_A Nanog, homeobox protein 99.7 7E-18 2.4E-22 132.3 8.5 62 55-116 20-81 (84)
13 3a01_A Homeodomain-containing 99.7 7.1E-18 2.4E-22 135.7 8.7 68 56-123 16-83 (93)
14 2da2_A Alpha-fetoprotein enhan 99.7 5.4E-18 1.9E-22 128.7 7.1 62 55-116 5-66 (70)
15 2dms_A Homeobox protein OTX2; 99.7 8.9E-18 3.1E-22 130.9 8.1 63 55-117 5-67 (80)
16 2hdd_A Protein (engrailed home 99.7 8.6E-18 2.9E-22 124.6 7.3 57 58-114 4-60 (61)
17 1ig7_A Homeotic protein MSX-1; 99.7 1.2E-17 4.1E-22 122.3 7.7 56 59-114 2-57 (58)
18 2da1_A Alpha-fetoprotein enhan 99.7 7.5E-18 2.6E-22 127.9 6.7 62 55-116 5-66 (70)
19 2djn_A Homeobox protein DLX-5; 99.7 8.6E-18 2.9E-22 127.9 6.8 62 55-116 5-66 (70)
20 2ecc_A Homeobox and leucine zi 99.7 1.1E-17 3.9E-22 131.2 7.6 59 59-117 5-63 (76)
21 1bw5_A ISL-1HD, insulin gene e 99.7 9.6E-18 3.3E-22 126.2 6.3 60 57-116 3-62 (66)
22 1zq3_P PRD-4, homeotic bicoid 99.7 2.1E-17 7.3E-22 125.2 8.2 61 57-117 2-62 (68)
23 1b8i_A Ultrabithorax, protein 99.7 1.7E-17 5.8E-22 130.0 7.7 62 55-116 18-79 (81)
24 1ahd_P Antennapedia protein mu 99.7 1.4E-17 4.9E-22 126.3 6.8 59 58-116 3-61 (68)
25 2da5_A Zinc fingers and homeob 99.7 1.8E-17 6.3E-22 128.1 7.5 59 58-116 8-66 (75)
26 1yz8_P Pituitary homeobox 2; D 99.7 7.9E-18 2.7E-22 127.5 5.3 61 56-116 2-62 (68)
27 1fjl_A Paired protein; DNA-bin 99.7 2.8E-17 9.5E-22 128.4 8.5 61 56-116 17-77 (81)
28 1jgg_A Segmentation protein EV 99.7 2.1E-17 7.3E-22 122.1 7.4 58 58-115 2-59 (60)
29 2m0c_A Homeobox protein arista 99.7 2.3E-17 7.9E-22 126.2 7.8 62 55-116 7-68 (75)
30 1wh5_A ZF-HD homeobox family p 99.7 1.5E-17 5.3E-22 130.6 6.9 59 56-114 16-78 (80)
31 2da4_A Hypothetical protein DK 99.7 1.3E-17 4.5E-22 130.0 6.3 61 56-116 7-71 (80)
32 1uhs_A HOP, homeodomain only p 99.7 2.7E-17 9.2E-22 125.8 7.9 58 59-116 3-61 (72)
33 2hi3_A Homeodomain-only protei 99.7 3.3E-17 1.1E-21 125.8 8.4 59 58-116 3-62 (73)
34 2l7z_A Homeobox protein HOX-A1 99.7 3E-17 1E-21 126.1 8.1 60 57-116 7-66 (73)
35 1ftt_A TTF-1 HD, thyroid trans 99.7 3E-17 1E-21 124.4 7.9 59 58-116 3-61 (68)
36 2k40_A Homeobox expressed in E 99.7 1.5E-17 5E-22 125.5 5.9 61 58-118 2-62 (67)
37 3a02_A Homeobox protein arista 99.7 2.3E-17 7.8E-22 121.9 6.7 57 60-116 2-58 (60)
38 3rkq_A Homeobox protein NKX-2. 99.7 3.3E-17 1.1E-21 119.2 7.4 56 58-113 3-58 (58)
39 2r5y_A Homeotic protein sex co 99.7 2.7E-17 9.3E-22 130.4 7.4 61 55-115 26-86 (88)
40 3a03_A T-cell leukemia homeobo 99.7 3.5E-17 1.2E-21 119.7 7.3 54 62-115 2-55 (56)
41 3nar_A ZHX1, zinc fingers and 99.7 3.7E-17 1.3E-21 131.9 8.1 62 57-118 25-86 (96)
42 1akh_A Protein (mating-type pr 99.7 3.4E-17 1.2E-21 121.0 6.5 57 57-113 5-61 (61)
43 2dn0_A Zinc fingers and homeob 99.7 3.5E-17 1.2E-21 126.6 6.6 59 58-116 9-67 (76)
44 1wh7_A ZF-HD homeobox family p 99.7 3E-17 1E-21 129.3 5.9 58 56-114 16-78 (80)
45 2ecb_A Zinc fingers and homeob 99.7 4.6E-17 1.6E-21 131.0 7.1 57 60-116 14-70 (89)
46 1b72_A Protein (homeobox prote 99.7 5.2E-17 1.8E-21 131.1 7.3 63 55-117 32-94 (97)
47 2ly9_A Zinc fingers and homeob 99.7 6.8E-17 2.3E-21 123.8 7.5 59 58-116 7-65 (74)
48 1x2n_A Homeobox protein pknox1 99.7 1E-16 3.6E-21 122.7 8.1 63 55-117 5-70 (73)
49 1k61_A Mating-type protein alp 99.7 9.5E-17 3.3E-21 118.4 7.3 56 60-115 1-59 (60)
50 1puf_B PRE-B-cell leukemia tra 99.7 9.5E-17 3.3E-21 122.9 7.1 61 58-118 2-65 (73)
51 2cqx_A LAG1 longevity assuranc 99.7 3.6E-17 1.2E-21 126.2 4.2 59 58-116 9-68 (72)
52 2dmp_A Zinc fingers and homeob 99.7 2.1E-16 7.1E-21 126.3 8.5 58 59-116 15-72 (89)
53 1b72_B Protein (PBX1); homeodo 99.7 2E-16 6.9E-21 124.7 7.9 60 58-117 2-64 (87)
54 1le8_B Mating-type protein alp 99.7 1.3E-16 4.5E-21 125.5 6.7 61 58-118 3-66 (83)
55 2cuf_A FLJ21616 protein; homeo 99.6 2.6E-16 8.9E-21 126.5 8.2 63 55-117 5-82 (95)
56 1du6_A PBX1, homeobox protein 99.6 1E-16 3.4E-21 119.7 5.1 57 58-114 4-63 (64)
57 2dmn_A Homeobox protein TGIF2L 99.6 3.5E-16 1.2E-20 123.3 8.0 64 55-118 5-71 (83)
58 2l9r_A Homeobox protein NKX-3. 99.6 7.2E-17 2.5E-21 124.1 4.0 56 64-119 11-66 (69)
59 1mnm_C Protein (MAT alpha-2 tr 99.6 4.6E-16 1.6E-20 123.1 7.8 58 57-114 27-87 (87)
60 3nau_A Zinc fingers and homeob 99.6 9E-16 3.1E-20 117.5 7.5 53 64-116 11-63 (66)
61 1e3o_C Octamer-binding transcr 99.6 4.5E-16 1.6E-20 136.2 6.6 60 56-115 100-159 (160)
62 1au7_A Protein PIT-1, GHF-1; c 99.6 5.5E-16 1.9E-20 134.1 6.6 59 57-115 87-145 (146)
63 1x2m_A LAG1 longevity assuranc 99.6 4.5E-16 1.5E-20 118.4 4.7 50 66-115 9-59 (64)
64 2xsd_C POU domain, class 3, tr 99.6 5.7E-16 1.9E-20 136.6 5.9 62 56-117 98-159 (164)
65 2e19_A Transcription factor 8; 99.6 1.3E-15 4.5E-20 115.0 6.7 53 62-114 8-60 (64)
66 3d1n_I POU domain, class 6, tr 99.6 1.5E-15 5.1E-20 131.5 8.0 59 56-114 92-150 (151)
67 2da6_A Hepatocyte nuclear fact 99.6 4.4E-15 1.5E-19 122.4 9.0 62 56-117 5-87 (102)
68 3l1p_A POU domain, class 5, tr 99.6 2.7E-15 9.3E-20 130.8 6.5 60 56-115 95-154 (155)
69 1lfb_A Liver transcription fac 99.5 3E-15 1E-19 122.5 5.2 61 57-117 9-90 (99)
70 3k2a_A Homeobox protein MEIS2; 99.5 5.2E-15 1.8E-19 112.4 6.1 58 63-120 4-64 (67)
71 1wi3_A DNA-binding protein SAT 99.5 8.6E-15 2.9E-19 113.0 7.2 57 57-113 7-64 (71)
72 2d5v_A Hepatocyte nuclear fact 99.5 4.6E-15 1.6E-19 129.6 6.4 62 55-116 95-156 (164)
73 1ic8_A Hepatocyte nuclear fact 99.3 3.5E-13 1.2E-17 122.1 4.2 58 57-114 115-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.3 1.9E-12 6.4E-17 104.4 7.8 56 64-119 12-70 (89)
75 2da7_A Zinc finger homeobox pr 99.3 2.4E-12 8.2E-17 99.7 6.3 46 66-111 14-59 (71)
76 1mh3_A Maltose binding-A1 home 99.2 3.5E-12 1.2E-16 121.7 5.2 53 61-113 369-421 (421)
77 2h8r_A Hepatocyte nuclear fact 99.2 2.1E-11 7.3E-16 112.5 6.5 52 61-112 146-218 (221)
78 2nzz_A Penetratin conjugated G 98.7 1.1E-09 3.6E-14 75.1 -1.5 26 99-124 1-26 (37)
79 2ys9_A Homeobox and leucine zi 93.2 0.092 3.1E-06 40.4 4.3 42 66-107 15-56 (70)
80 2jn6_A Protein CGL2762, transp 88.6 0.99 3.4E-05 34.6 6.2 43 61-107 3-46 (97)
81 1hjb_A Ccaat/enhancer binding 80.9 3.8 0.00013 32.5 6.3 49 108-159 28-76 (87)
82 2glo_A Brinker CG9653-PA; prot 80.4 2.5 8.5E-05 29.8 4.7 45 61-106 3-47 (59)
83 1gu4_A CAAT/enhancer binding p 79.6 3 0.0001 32.4 5.2 47 108-157 28-74 (78)
84 1hlv_A CENP-B, major centromer 78.5 5.4 0.00018 31.7 6.7 50 59-111 3-52 (131)
85 2yy0_A C-MYC-binding protein; 76.8 3.3 0.00011 29.9 4.3 34 125-158 18-51 (53)
86 2wt7_B Transcription factor MA 76.1 15 0.0005 29.4 8.4 63 95-157 17-86 (90)
87 2elh_A CG11849-PA, LD40883P; s 73.5 12 0.0004 28.3 7.1 42 60-106 19-60 (87)
88 1t2k_D Cyclic-AMP-dependent tr 73.4 9.8 0.00034 27.5 6.3 36 121-156 24-59 (61)
89 1ci6_A Transcription factor AT 71.1 12 0.00043 27.4 6.4 36 121-156 25-60 (63)
90 1tc3_C Protein (TC3 transposas 69.9 9.9 0.00034 24.0 5.2 41 62-107 4-44 (51)
91 2dgc_A Protein (GCN4); basic d 68.8 7.3 0.00025 28.8 4.7 28 131-158 35-62 (63)
92 2wt7_A Proto-oncogene protein 68.4 15 0.00051 26.9 6.4 36 121-156 25-60 (63)
93 1gd2_E Transcription factor PA 66.6 14 0.00049 28.0 6.1 28 129-156 39-66 (70)
94 3hug_A RNA polymerase sigma fa 63.9 15 0.0005 27.7 5.8 46 64-114 38-83 (92)
95 1jnm_A Proto-oncogene C-JUN; B 63.4 8.1 0.00028 28.1 4.0 32 124-155 27-58 (62)
96 1jko_C HIN recombinase, DNA-in 61.9 3.7 0.00013 26.8 1.8 40 63-107 5-44 (52)
97 1xsv_A Hypothetical UPF0122 pr 60.2 62 0.0021 25.6 9.3 46 64-114 26-71 (113)
98 1s7o_A Hypothetical UPF0122 pr 59.8 65 0.0022 25.7 9.6 46 64-114 23-68 (113)
99 1gd2_E Transcription factor PA 58.9 23 0.00079 26.8 5.9 51 102-153 20-70 (70)
100 2o8x_A Probable RNA polymerase 56.8 12 0.00042 26.0 4.0 46 64-114 16-61 (70)
101 2lv7_A Calcium-binding protein 56.6 48 0.0016 25.4 7.7 47 60-106 26-79 (100)
102 1p4w_A RCSB; solution structur 53.2 31 0.001 27.0 6.1 47 61-113 32-78 (99)
103 3mzy_A RNA polymerase sigma-H 52.3 28 0.00095 27.5 5.9 45 64-114 110-154 (164)
104 2rn7_A IS629 ORFA; helix, all 51.5 36 0.0012 26.1 6.3 46 61-106 4-52 (108)
105 3gp4_A Transcriptional regulat 50.5 1.1E+02 0.0036 25.4 10.8 36 60-108 37-72 (142)
106 3c57_A Two component transcrip 50.5 25 0.00085 26.9 5.1 46 63-114 27-72 (95)
107 3hnw_A Uncharacterized protein 49.3 54 0.0018 27.6 7.4 43 117-159 87-129 (138)
108 2jee_A YIIU; FTSZ, septum, coi 49.3 41 0.0014 26.3 6.1 37 120-156 28-64 (81)
109 1fse_A GERE; helix-turn-helix 47.5 29 0.001 24.3 4.8 47 62-114 10-56 (74)
110 3gpv_A Transcriptional regulat 47.1 90 0.0031 25.9 8.5 37 60-109 51-87 (148)
111 1x3u_A Transcriptional regulat 45.6 21 0.00071 25.6 3.8 45 64-114 17-61 (79)
112 1je8_A Nitrate/nitrite respons 44.0 37 0.0013 25.1 5.0 46 63-114 21-66 (82)
113 1tty_A Sigma-A, RNA polymerase 44.0 33 0.0011 25.6 4.8 50 64-114 19-68 (87)
114 1ku3_A Sigma factor SIGA; heli 43.5 41 0.0014 24.0 5.1 49 64-113 11-59 (73)
115 1deb_A APC protein, adenomatou 42.7 25 0.00086 25.4 3.6 36 127-162 4-39 (54)
116 2p7v_B Sigma-70, RNA polymeras 42.3 27 0.00093 24.6 3.9 50 64-114 6-55 (68)
117 3s4r_A Vimentin; alpha-helix, 40.5 1.1E+02 0.0037 24.0 7.4 57 99-156 37-93 (93)
118 2rnj_A Response regulator prot 39.9 43 0.0015 25.0 4.9 46 63-114 29-74 (91)
119 1hjb_A Ccaat/enhancer binding 38.7 1.1E+02 0.0038 23.9 7.2 35 125-159 35-69 (87)
120 1rp3_A RNA polymerase sigma fa 36.3 36 0.0012 28.8 4.3 46 64-114 188-233 (239)
121 3oja_B Anopheles plasmodium-re 34.8 80 0.0027 31.1 7.2 8 140-147 544-551 (597)
122 1or7_A Sigma-24, RNA polymeras 34.4 59 0.002 26.6 5.3 46 64-114 141-186 (194)
123 1go4_E MAD1 (mitotic arrest de 33.9 47 0.0016 26.9 4.4 35 126-160 12-46 (100)
124 2wt7_A Proto-oncogene protein 33.8 1.3E+02 0.0045 21.6 7.1 32 126-157 23-54 (63)
125 1u78_A TC3 transposase, transp 32.5 68 0.0023 24.9 5.2 41 62-107 5-45 (141)
126 1r8e_A Multidrug-efflux transp 32.3 86 0.0029 27.7 6.4 35 61-108 42-76 (278)
127 3a5t_A Transcription factor MA 31.9 8.8 0.0003 31.5 -0.3 60 95-155 27-94 (107)
128 3i5g_B Myosin regulatory light 31.7 73 0.0025 25.7 5.4 41 59-99 5-50 (153)
129 2jee_A YIIU; FTSZ, septum, coi 30.6 1.4E+02 0.0047 23.3 6.4 43 115-157 30-72 (81)
130 2jpc_A SSRB; DNA binding prote 29.9 45 0.0015 22.6 3.3 27 88-114 17-43 (61)
131 1gu4_A CAAT/enhancer binding p 29.6 1.9E+02 0.0064 22.1 7.1 34 125-158 35-68 (78)
132 3lay_A Zinc resistance-associa 29.6 1.7E+02 0.0057 25.6 7.6 14 64-77 68-81 (175)
133 1iuf_A Centromere ABP1 protein 29.5 57 0.0019 26.8 4.4 48 58-108 6-60 (144)
134 3hnw_A Uncharacterized protein 29.1 1.3E+02 0.0044 25.3 6.5 46 115-160 78-123 (138)
135 2oxj_A Hybrid alpha/beta pepti 28.4 70 0.0024 21.2 3.6 24 134-157 9-32 (34)
136 1dh3_A Transcription factor CR 28.2 1.5E+02 0.0051 21.0 5.8 26 131-156 27-52 (55)
137 2xi8_A Putative transcription 27.4 27 0.00091 23.5 1.7 23 87-109 17-39 (66)
138 3bd1_A CRO protein; transcript 27.2 34 0.0011 24.6 2.3 23 87-109 14-36 (79)
139 4h22_A Leucine-rich repeat fli 27.0 1.7E+02 0.0057 23.8 6.5 52 110-161 35-86 (103)
140 3lph_A Protein REV; helix-loop 26.7 49 0.0017 25.4 3.1 35 69-117 18-52 (72)
141 2r1j_L Repressor protein C2; p 26.6 29 0.00098 23.5 1.7 24 87-110 21-44 (68)
142 3ulq_B Transcriptional regulat 26.6 1.2E+02 0.0042 22.9 5.5 44 62-111 28-71 (90)
143 3m9b_A Proteasome-associated A 26.6 80 0.0027 29.4 5.2 31 129-159 64-94 (251)
144 1uii_A Geminin; human, DNA rep 26.3 1.5E+02 0.005 23.3 5.8 29 127-155 47-75 (83)
145 3m91_A Proteasome-associated A 26.2 1.5E+02 0.005 21.1 5.4 29 128-156 18-46 (51)
146 2pmy_A RAS and EF-hand domain- 26.2 65 0.0022 23.4 3.8 43 64-106 21-68 (91)
147 2x48_A CAG38821; archeal virus 25.9 70 0.0024 21.2 3.6 36 66-106 18-53 (55)
148 1jnm_A Proto-oncogene C-JUN; B 25.8 1.8E+02 0.0063 20.7 6.3 31 127-157 23-53 (62)
149 2yy0_A C-MYC-binding protein; 25.5 80 0.0027 22.5 3.9 26 134-159 20-45 (53)
150 1fi6_A EH domain protein REPS1 25.3 95 0.0032 22.9 4.6 43 64-106 3-50 (92)
151 2x7l_M HIV REV; nuclear export 25.0 46 0.0016 27.7 2.8 34 70-117 16-49 (115)
152 3bs3_A Putative DNA-binding pr 24.5 33 0.0011 23.9 1.8 23 87-109 26-48 (76)
153 1zug_A Phage 434 CRO protein; 24.4 32 0.0011 23.6 1.6 24 87-110 19-42 (71)
154 2q24_A Putative TETR family tr 23.9 42 0.0014 27.1 2.5 45 67-113 19-63 (194)
155 2q0o_A Probable transcriptiona 23.9 97 0.0033 26.9 5.1 45 63-113 175-219 (236)
156 2v66_B Nuclear distribution pr 23.8 2.4E+02 0.0083 23.0 7.0 21 138-158 40-60 (111)
157 1u78_A TC3 transposase, transp 23.7 1.4E+02 0.0048 23.1 5.5 44 62-109 59-104 (141)
158 1t6f_A Geminin; coiled-coil, c 23.1 89 0.003 21.0 3.4 25 129-153 10-34 (37)
159 1adr_A P22 C2 repressor; trans 22.8 37 0.0013 23.6 1.7 24 87-110 21-44 (76)
160 2wuj_A Septum site-determining 22.8 48 0.0016 23.7 2.3 25 131-155 32-56 (57)
161 1c07_A Protein (epidermal grow 22.7 1E+02 0.0035 22.9 4.3 43 64-106 4-51 (95)
162 1t2k_D Cyclic-AMP-dependent tr 22.5 2.1E+02 0.0072 20.3 6.6 32 126-157 22-53 (61)
163 2oto_A M protein; helical coil 22.2 2.6E+02 0.0087 23.3 7.2 19 106-124 23-41 (155)
164 3w03_C DNA repair protein XRCC 22.1 1.1E+02 0.0038 27.1 5.0 38 120-157 139-176 (184)
165 1q06_A Transcriptional regulat 22.0 3.2E+02 0.011 22.1 8.6 36 61-109 36-71 (135)
166 2b5a_A C.BCLI; helix-turn-heli 21.9 40 0.0014 23.5 1.7 23 87-109 26-48 (77)
167 1pdn_C Protein (PRD paired); p 21.9 2.1E+02 0.0072 21.3 6.1 41 63-108 17-57 (128)
168 2k27_A Paired box protein PAX- 21.8 1.3E+02 0.0043 24.4 5.1 47 55-106 17-63 (159)
169 1nlw_A MAD protein, MAX dimeri 21.6 96 0.0033 23.6 4.0 30 128-157 49-78 (80)
170 2ve7_C Kinetochore protein NUF 21.0 31 0.0011 31.7 1.2 50 120-169 142-191 (250)
171 3vmx_A Voltage-gated hydrogen 20.8 2.3E+02 0.0079 20.1 5.5 37 121-157 6-42 (48)
172 1r69_A Repressor protein CI; g 20.8 42 0.0014 22.8 1.7 24 87-110 17-40 (69)
173 3omt_A Uncharacterized protein 20.4 43 0.0015 23.4 1.7 23 87-109 24-46 (73)
174 3t72_q RNA polymerase sigma fa 20.4 2E+02 0.0068 22.4 5.7 50 64-114 20-69 (99)
175 1y7y_A C.AHDI; helix-turn-heli 20.2 46 0.0016 22.9 1.7 23 87-109 29-51 (74)
No 1
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-18 Score=133.14 Aligned_cols=62 Identities=26% Similarity=0.439 Sum_probs=56.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
.+.+++|++||.+|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|+++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 33455666799999999999999999999999999999999999999999999999999864
No 2
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.74 E-value=2.3e-18 Score=128.09 Aligned_cols=60 Identities=30% Similarity=0.422 Sum_probs=53.1
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
.+++|++|+..|+.+||..|..++||+..++.+||..+||++++|++||||||+|+|+++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 456667799999999999999999999999999999999999999999999999999853
No 3
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.74 E-value=4.8e-18 Score=131.71 Aligned_cols=64 Identities=30% Similarity=0.466 Sum_probs=57.7
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHHHHH
Q 019540 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERD 120 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~e~e 120 (339)
.+++|++|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.+.+..
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcccc
Confidence 3445566999999999999999999999999999999999999999999999999998765443
No 4
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=5.9e-18 Score=132.09 Aligned_cols=64 Identities=28% Similarity=0.557 Sum_probs=58.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~e 118 (339)
+..+++|++|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 4456667779999999999999999999999999999999999999999999999999997643
No 5
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.74 E-value=3.8e-18 Score=127.45 Aligned_cols=59 Identities=34% Similarity=0.630 Sum_probs=54.8
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhH
Q 019540 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krk 115 (339)
.+++|++||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 45667779999999999999999999999999999999999999999999999999985
No 6
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=3.1e-18 Score=130.40 Aligned_cols=62 Identities=26% Similarity=0.502 Sum_probs=57.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
...+++|++|+..|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34556677799999999999999999999999999999999999999999999999999854
No 7
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.6e-18 Score=131.80 Aligned_cols=61 Identities=34% Similarity=0.600 Sum_probs=55.8
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 56 k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
+.+++|++|+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3445556699999999999999999999999999999999999999999999999999854
No 8
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=6.3e-18 Score=128.51 Aligned_cols=62 Identities=27% Similarity=0.538 Sum_probs=57.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
+..+++|++|+.+|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34566677799999999999999999999999999999999999999999999999999854
No 9
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.73 E-value=1.2e-17 Score=129.52 Aligned_cols=63 Identities=33% Similarity=0.485 Sum_probs=57.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~ 117 (339)
...+++|++|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+...
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 345566777999999999999999999999999999999999999999999999999998653
No 10
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=5.5e-18 Score=131.76 Aligned_cols=64 Identities=25% Similarity=0.498 Sum_probs=58.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~e 118 (339)
...+++|++|+.+|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|++...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 3456667779999999999999999999999999999999999999999999999999997643
No 11
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=6.7e-18 Score=128.53 Aligned_cols=62 Identities=42% Similarity=0.676 Sum_probs=57.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
...+++|++|+.+|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34456677899999999999999999999999999999999999999999999999999864
No 12
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=7e-18 Score=132.30 Aligned_cols=62 Identities=27% Similarity=0.381 Sum_probs=56.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
.+.+++|++|+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.+
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34455666799999999999999999999999999999999999999999999999999854
No 13
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.73 E-value=7.1e-18 Score=135.67 Aligned_cols=68 Identities=29% Similarity=0.509 Sum_probs=58.5
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHHHHHHhH
Q 019540 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGV 123 (339)
Q Consensus 56 k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~e~e~~~ 123 (339)
+.+++|++||..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|||+...+.....
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~ 83 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAE 83 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHH
Confidence 34556667999999999999999999999999999999999999999999999999999776554333
No 14
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=5.4e-18 Score=128.71 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=57.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
+..+++|++|+..|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 34566677799999999999999999999999999999999999999999999999999854
No 15
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=8.9e-18 Score=130.90 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=57.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~ 117 (339)
.+.+++|++|+..|+.+||..|..++||+..++.+||.+|||++++|++||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 345566777999999999999999999999999999999999999999999999999998653
No 16
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.72 E-value=8.6e-18 Score=124.60 Aligned_cols=57 Identities=32% Similarity=0.634 Sum_probs=52.6
Q ss_pred CCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
+++|++||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 4 KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ---CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 556677999999999999999999999999999999999999999999999999997
No 17
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=1.2e-17 Score=122.33 Aligned_cols=56 Identities=32% Similarity=0.564 Sum_probs=53.7
Q ss_pred CCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 59 rKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
++|++||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 2 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 2 KPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 56677999999999999999999999999999999999999999999999999986
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=7.5e-18 Score=127.93 Aligned_cols=62 Identities=21% Similarity=0.424 Sum_probs=57.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
.+.+++|++||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 34556677799999999999999999999999999999999999999999999999999854
No 19
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=8.6e-18 Score=127.93 Aligned_cols=62 Identities=31% Similarity=0.481 Sum_probs=57.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
+..+++|++||..|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 44566677799999999999999999999999999999999999999999999999999853
No 20
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=1.1e-17 Score=131.21 Aligned_cols=59 Identities=27% Similarity=0.320 Sum_probs=55.4
Q ss_pred CCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHH
Q 019540 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 59 rKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~ 117 (339)
.++++||.+|+.+||..|..++||+..+|++||..+||+++||+|||||||+|+|+.++
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45667999999999999999999999999999999999999999999999999998654
No 21
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.71 E-value=9.6e-18 Score=126.15 Aligned_cols=60 Identities=27% Similarity=0.494 Sum_probs=56.0
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
.+++|++||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 355667799999999999999999999999999999999999999999999999999864
No 22
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.71 E-value=2.1e-17 Score=125.23 Aligned_cols=61 Identities=30% Similarity=0.481 Sum_probs=56.7
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHH
Q 019540 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~ 117 (339)
.+++|++||..|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 3566777999999999999999999999999999999999999999999999999998653
No 23
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.71 E-value=1.7e-17 Score=130.04 Aligned_cols=62 Identities=32% Similarity=0.569 Sum_probs=53.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
+..+++|++|+..|+.+||..|..++||+..+|.+||.+|||++++|+|||||||+|+|+..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 34566677799999999999999999999999999999999999999999999999999854
No 24
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.70 E-value=1.4e-17 Score=126.32 Aligned_cols=59 Identities=34% Similarity=0.679 Sum_probs=55.8
Q ss_pred CCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
+++|++||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 55677799999999999999999999999999999999999999999999999999865
No 25
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.8e-17 Score=128.12 Aligned_cols=59 Identities=24% Similarity=0.410 Sum_probs=55.7
Q ss_pred CCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
++|+++||.+|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 45677799999999999999999999999999999999999999999999999999865
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.70 E-value=7.9e-18 Score=127.47 Aligned_cols=61 Identities=25% Similarity=0.532 Sum_probs=56.9
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 56 k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
..+++|++|+..|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 3466677799999999999999999999999999999999999999999999999999865
No 27
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.70 E-value=2.8e-17 Score=128.38 Aligned_cols=61 Identities=31% Similarity=0.513 Sum_probs=56.2
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 56 k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
+.+++|++|+..|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 3455566699999999999999999999999999999999999999999999999999865
No 28
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.70 E-value=2.1e-17 Score=122.07 Aligned_cols=58 Identities=36% Similarity=0.562 Sum_probs=54.5
Q ss_pred CCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhH
Q 019540 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krk 115 (339)
+++|++||..|+.+||..|..++||+..++.+||.++||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4567779999999999999999999999999999999999999999999999999974
No 29
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.70 E-value=2.3e-17 Score=126.23 Aligned_cols=62 Identities=31% Similarity=0.568 Sum_probs=56.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
++.++.|++|+..|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 34455666799999999999999999999999999999999999999999999999999864
No 30
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.70 E-value=1.5e-17 Score=130.65 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=54.4
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhh----hcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 56 HVSEKKRRLSVDQVKALEKNFEV----ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 56 k~krKRrRfT~~Ql~~LE~~F~~----~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
+.+++|+.||.+|+..||..|+. ++||+..+|++||.+|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 34555666999999999999999 999999999999999999999999999999999985
No 31
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=129.97 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=56.0
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhh----cCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 56 HVSEKKRRLSVDQVKALEKNFEVE----NKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 56 k~krKRrRfT~~Ql~~LE~~F~~~----~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
+.+++|+.||.+|+.+||..|..+ +||+..++++||.+|||+++||+|||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 345556669999999999999999 9999999999999999999999999999999999854
No 32
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=2.7e-17 Score=125.82 Aligned_cols=58 Identities=33% Similarity=0.587 Sum_probs=54.9
Q ss_pred CCCCcCCHHHHHHHHHHhhh-hcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 59 EKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 59 rKRrRfT~~Ql~~LE~~F~~-~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
++|++|+..|+.+||..|.. ++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 56777999999999999996 99999999999999999999999999999999999865
No 33
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=3.3e-17 Score=125.78 Aligned_cols=59 Identities=31% Similarity=0.541 Sum_probs=55.3
Q ss_pred CCCCCcCCHHHHHHHHHHhhh-hcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 58 SEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~-~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
+++|++||..|+.+||..|.. ++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 456778999999999999995 99999999999999999999999999999999999865
No 34
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.70 E-value=3e-17 Score=126.15 Aligned_cols=60 Identities=27% Similarity=0.485 Sum_probs=56.0
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
.+++|++|+..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 456667799999999999999999999999999999999999999999999999999854
No 35
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.70 E-value=3e-17 Score=124.40 Aligned_cols=59 Identities=32% Similarity=0.538 Sum_probs=55.7
Q ss_pred CCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
+++|++||..|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 45667799999999999999999999999999999999999999999999999999865
No 36
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=125.47 Aligned_cols=61 Identities=31% Similarity=0.495 Sum_probs=56.8
Q ss_pred CCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHHH
Q 019540 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~e 118 (339)
+++|++||..|+.+||..|..++||+..++.+||.++||++++|++||||||+|+|+...+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 4567779999999999999999999999999999999999999999999999999987644
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.69 E-value=2.3e-17 Score=121.93 Aligned_cols=57 Identities=32% Similarity=0.602 Sum_probs=50.5
Q ss_pred CCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
.|++||..|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+.+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 467799999999999999999999999999999999999999999999999999854
No 38
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.69 E-value=3.3e-17 Score=119.24 Aligned_cols=56 Identities=36% Similarity=0.514 Sum_probs=53.0
Q ss_pred CCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhh
Q 019540 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~K 113 (339)
+++|++|+..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 45667799999999999999999999999999999999999999999999999986
No 39
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.69 E-value=2.7e-17 Score=130.44 Aligned_cols=61 Identities=34% Similarity=0.696 Sum_probs=54.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krk 115 (339)
+..+++|++|+..|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|+|+.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 4456667779999999999999999999999999999999999999999999999999985
No 40
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.69 E-value=3.5e-17 Score=119.66 Aligned_cols=54 Identities=35% Similarity=0.639 Sum_probs=50.9
Q ss_pred CcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhH
Q 019540 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krk 115 (339)
+.|+..|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 458999999999999999999999999999999999999999999999999985
No 41
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.69 E-value=3.7e-17 Score=131.89 Aligned_cols=62 Identities=29% Similarity=0.471 Sum_probs=56.4
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHHH
Q 019540 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~e 118 (339)
.+++|++|+..|+.+||..|..++||+..+|.+||.+|||+++||++||||||+|+|+.++.
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 44567779999999999999999999999999999999999999999999999999997643
No 42
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.68 E-value=3.4e-17 Score=121.01 Aligned_cols=57 Identities=33% Similarity=0.518 Sum_probs=48.6
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhh
Q 019540 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~K 113 (339)
.+++|++|+..|+.+||..|..++||+..++.+||..+||++.||++||||||+|+|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 445566699999999999999999999999999999999999999999999999986
No 43
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.5e-17 Score=126.55 Aligned_cols=59 Identities=27% Similarity=0.370 Sum_probs=55.4
Q ss_pred CCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
...|++||.+|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34577799999999999999999999999999999999999999999999999999864
No 44
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.68 E-value=3e-17 Score=129.29 Aligned_cols=58 Identities=12% Similarity=0.289 Sum_probs=53.1
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhh-----hcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 56 HVSEKKRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 56 k~krKRrRfT~~Ql~~LE~~F~~-----~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
+.+++|+.||.+|+..|| .|.. ++||+..+|++||.+|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 345556669999999999 7999 999999999999999999999999999999999985
No 45
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=4.6e-17 Score=131.04 Aligned_cols=57 Identities=21% Similarity=0.394 Sum_probs=54.0
Q ss_pred CCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
+.++||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|||++.
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 445799999999999999999999999999999999999999999999999999864
No 46
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=5.2e-17 Score=131.11 Aligned_cols=63 Identities=35% Similarity=0.590 Sum_probs=55.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~ 117 (339)
+..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+...
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 345566777999999999999999999999999999999999999999999999999998653
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=6.8e-17 Score=123.85 Aligned_cols=59 Identities=14% Similarity=0.281 Sum_probs=55.8
Q ss_pred CCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
++.|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+.+
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 45677799999999999999999999999999999999999999999999999999865
No 48
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=1e-16 Score=122.69 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=56.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhh---hcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~---~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~ 117 (339)
++.+++|++|+..|+.+||..|.. ++||+..++++||.++||+++||++||||||+|+|+..+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 344566667999999999999987 999999999999999999999999999999999998653
No 49
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.67 E-value=9.5e-17 Score=118.41 Aligned_cols=56 Identities=27% Similarity=0.397 Sum_probs=53.3
Q ss_pred CCCcCCHHHHHHHHHHhhh---hcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhH
Q 019540 60 KKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~---~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krk 115 (339)
|+++|+.+|+.+||..|.. ++||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4677999999999999999 9999999999999999999999999999999999973
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.66 E-value=9.5e-17 Score=122.89 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=56.5
Q ss_pred CCCCCcCCHHHHHHHHHHh---hhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHHH
Q 019540 58 SEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F---~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~e 118 (339)
+++|++|+..|+.+||..| ..++||+..++..||..+||++.||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 4667779999999999999 899999999999999999999999999999999999986543
No 51
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=3.6e-17 Score=126.17 Aligned_cols=59 Identities=25% Similarity=0.389 Sum_probs=54.5
Q ss_pred CCCCCcCCHHHHHHHHHHh-hhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 58 SEKKRRLSVDQVKALEKNF-EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F-~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
.++++|++.+|+.+||..| ..++||+..+|.+||.+|||+++||+|||||||+|||+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 3456679999999999999 9999999999999999999999999999999999999743
No 52
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=126.26 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=54.3
Q ss_pred CCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 59 rKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
.++++||.+|+.+||..|..++||+..+|++||.++||++++|+|||||||+|+|+..
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 4556699999999999999999999999999999999999999999999999999854
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.65 E-value=2e-16 Score=124.69 Aligned_cols=60 Identities=28% Similarity=0.442 Sum_probs=55.6
Q ss_pred CCCCCcCCHHHHHHHHHHh---hhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHH
Q 019540 58 SEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F---~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~ 117 (339)
+++|++|+..|+.+||..| ..++||+..++.+||.++||+++||++||||||+|+|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 4667779999999999999 89999999999999999999999999999999999998654
No 54
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.65 E-value=1.3e-16 Score=125.48 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=55.3
Q ss_pred CCCCCcCCHHHHHHHHHHhhh---hcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHHH
Q 019540 58 SEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~---~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~e 118 (339)
+++++||+..|+.+||..|.. ++||+..++.+||..+||+++||++||||||+|+|+....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 455667999999999999999 9999999999999999999999999999999999986543
No 55
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=2.6e-16 Score=126.55 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=57.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhC---------------CChHHHhhhhHhhHHHhhhHHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------LQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~Lg---------------LserQVqVWFQNRRaK~Krkq~ 117 (339)
.+.++.|++|+..|+.+||..|..++||+..+|++||..|+ |++.+|++||||||+|+|++..
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 34455666799999999999999999999999999999999 9999999999999999998754
No 56
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=1e-16 Score=119.72 Aligned_cols=57 Identities=28% Similarity=0.451 Sum_probs=53.9
Q ss_pred CCCCCcCCHHHHHHHHHHh---hhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 58 SEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F---~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
+++|++|+..|+.+||..| ..++||+..++.+||.++||++.||++||||||+|+|+
T Consensus 4 rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 4 HIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 4566779999999999999 89999999999999999999999999999999999986
No 57
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.64 E-value=3.5e-16 Score=123.31 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=56.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhh---hcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~---~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~e 118 (339)
.+.+++|++|+.+|+.+|+.+|.. ++||+..+|++||.++||+++||++||||||+|+|+...+
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 345566667999999999999988 5999999999999999999999999999999999986543
No 58
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.64 E-value=7.2e-17 Score=124.08 Aligned_cols=56 Identities=41% Similarity=0.609 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHHHH
Q 019540 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~e~ 119 (339)
+|..|+..||..|..++||+..+|.+||.++||+++||+|||||||+|+|+++...
T Consensus 11 ~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~ 66 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSS 66 (69)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhh
Confidence 78999999999999999999999999999999999999999999999999876543
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.63 E-value=4.6e-16 Score=123.10 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=54.1
Q ss_pred CCCCCCcCCHHHHHHHHHHhhh---hcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 57 VSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~---~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
++++|++|+.+|+.+||..|.. ++||+..+|.+||.++||+++||++||||||+|+|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 4556677999999999999999 999999999999999999999999999999999983
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.61 E-value=9e-16 Score=117.52 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
-|.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|||+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 57899999999999999999999999999999999999999999999999754
No 61
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.61 E-value=4.5e-16 Score=136.21 Aligned_cols=60 Identities=28% Similarity=0.441 Sum_probs=53.7
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhH
Q 019540 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 56 k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krk 115 (339)
+++++|++|+..|+.+||..|..++||+..+|.+||.++||+++||+|||||||+|+||+
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 445566669999999999999999999999999999999999999999999999999984
No 62
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.61 E-value=5.5e-16 Score=134.09 Aligned_cols=59 Identities=32% Similarity=0.535 Sum_probs=54.1
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhH
Q 019540 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krk 115 (339)
++++|++|+..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|++
T Consensus 87 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 87 KRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 44556669999999999999999999999999999999999999999999999999985
No 63
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.60 E-value=4.5e-16 Score=118.43 Aligned_cols=50 Identities=26% Similarity=0.453 Sum_probs=46.9
Q ss_pred HHHHHHHHHHh-hhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhH
Q 019540 66 VDQVKALEKNF-EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 66 ~~Ql~~LE~~F-~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krk 115 (339)
+.|+.+||..| ..++||+..+|.+||++|||+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 56899999999 568999999999999999999999999999999999974
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.60 E-value=5.7e-16 Score=136.55 Aligned_cols=62 Identities=31% Similarity=0.360 Sum_probs=52.3
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHH
Q 019540 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 56 k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~ 117 (339)
+++++|++|+..|+.+||..|..++||+..+|.+||.++||+++||+|||||||+|||+...
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 34455666999999999999999999999999999999999999999999999999998653
No 65
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=115.01 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=50.1
Q ss_pred CcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
..++.+|+..||..|..++||+..+|.+||.+|||++++|+|||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34679999999999999999999999999999999999999999999999876
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=131.54 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=54.7
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 56 k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
+++++|++|+..|+.+||..|..++||+..+|.+||.++||+++||+|||||||+|+||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34455666999999999999999999999999999999999999999999999999996
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.4e-15 Score=122.45 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=56.4
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHh---------------------CCChHHHhhhhHhhHHHhhh
Q 019540 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQEL---------------------GLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 56 k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~L---------------------gLserQVqVWFQNRRaK~Kr 114 (339)
+.++.|.+|++.|+.+||..|+.++||+..+|++||.+| +|++.+|++||||||+++|+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 345566669999999999999999999999999999999 79999999999999999998
Q ss_pred HHH
Q 019540 115 KQL 117 (339)
Q Consensus 115 kq~ 117 (339)
++.
T Consensus 85 ~~~ 87 (102)
T 2da6_A 85 RQK 87 (102)
T ss_dssp HHH
T ss_pred hhH
Confidence 653
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.56 E-value=2.7e-15 Score=130.77 Aligned_cols=60 Identities=28% Similarity=0.387 Sum_probs=55.4
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhH
Q 019540 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 56 k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krk 115 (339)
+++++|++|+..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 455566779999999999999999999999999999999999999999999999999973
No 69
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.55 E-value=3e-15 Score=122.47 Aligned_cols=61 Identities=21% Similarity=0.326 Sum_probs=53.1
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHH------------------hC---CChHHHhhhhHhhHHHhhhH
Q 019540 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQE------------------LG---LQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~------------------Lg---LserQVqVWFQNRRaK~Krk 115 (339)
.+++|+.|+..|+.+||..|..++||+..+|++||.. || |++.+|++||||||+++|++
T Consensus 9 ~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k 88 (99)
T 1lfb_A 9 GRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFR 88 (99)
T ss_dssp ----CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHh
Confidence 3445556999999999999999999999999999999 88 99999999999999999886
Q ss_pred HH
Q 019540 116 QL 117 (339)
Q Consensus 116 q~ 117 (339)
+.
T Consensus 89 ~~ 90 (99)
T 1lfb_A 89 HK 90 (99)
T ss_dssp C-
T ss_pred ch
Confidence 53
No 70
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=5.2e-15 Score=112.37 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=50.9
Q ss_pred cCCHHHHHHHHHHhh---hhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHHHHH
Q 019540 63 RLSVDQVKALEKNFE---VENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERD 120 (339)
Q Consensus 63 RfT~~Ql~~LE~~F~---~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~e~e 120 (339)
+|+.+|+.+|+..|. .++||+..+|.+||.++||+++||++||||||+|+|+..+++.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 599999999999999 9999999999999999999999999999999999998765543
No 71
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=8.6e-15 Score=113.03 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=52.0
Q ss_pred CCCCCCcCCHHHHHHHHHHhhh-hcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhh
Q 019540 57 VSEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~-~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~K 113 (339)
.++.|+.|+.+|+.+|+..|+. ++||+...|..||.++||++++|+|||||||--.|
T Consensus 7 ~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 7 GPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 4455566999999999999999 99999999999999999999999999999997654
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.54 E-value=4.6e-15 Score=129.63 Aligned_cols=62 Identities=23% Similarity=0.300 Sum_probs=53.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq 116 (339)
.+.+++|++|+..|+.+||..|..++||+..+|.+||.++||+++||+|||||||+|+|+..
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 33455666799999999999999999999999999999999999999999999999999854
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.34 E-value=3.5e-13 Score=122.12 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=51.7
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhC---------------------CChHHHhhhhHhhHHHhhh
Q 019540 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------------LQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~Lg---------------------LserQVqVWFQNRRaK~Kr 114 (339)
.+++|+.|+..|+.+||..|..++||+..+|++||..|+ |++.+|++||||||+++|.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred CCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 344445599999999999999999999999999999999 9999999999999999875
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.34 E-value=1.9e-12 Score=104.39 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHhhh---hcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHHHH
Q 019540 64 LSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~---~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~e~ 119 (339)
|+.+++.+|+.+|.. ++||+..+|.+||.++||+++||++||||||+|+|+...++
T Consensus 12 l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 899999999999987 99999999999999999999999999999999999865443
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.4e-12 Score=99.69 Aligned_cols=46 Identities=20% Similarity=0.459 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHH
Q 019540 66 VDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (339)
Q Consensus 66 ~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK 111 (339)
.+|+.+|+.+|..+++|+.+++..||..+||+.++|+|||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999984
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.25 E-value=3.5e-12 Score=121.70 Aligned_cols=53 Identities=34% Similarity=0.534 Sum_probs=50.5
Q ss_pred CCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhh
Q 019540 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~K 113 (339)
++.++..|+..||+.|..++||+..+|++||+++||+++||++||||||+|+|
T Consensus 369 ~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 44599999999999999999999999999999999999999999999999986
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.18 E-value=2.1e-11 Score=112.53 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=48.3
Q ss_pred CCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhC---------------------CChHHHhhhhHhhHHHh
Q 019540 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------------LQPRQVAVWFQNRRARW 112 (339)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~Lg---------------------LserQVqVWFQNRRaK~ 112 (339)
|..|++.|+.+||..|..++||+..+|++||..++ |++.+|++||||||++.
T Consensus 146 R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 146 RFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 33489999999999999999999999999999988 89999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.68 E-value=1.1e-09 Score=75.08 Aligned_cols=26 Identities=38% Similarity=0.993 Sum_probs=21.6
Q ss_pred HHHhhhhHhhHHHhhhHHHHHHHhHH
Q 019540 99 RQVAVWFQNRRARWKTKQLERDYGVL 124 (339)
Q Consensus 99 rQVqVWFQNRRaK~Krkq~e~e~~~l 124 (339)
+||+|||||||+|||+++.+.....+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~ 26 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDII 26 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHH
Confidence 58999999999999998877655443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.24 E-value=0.092 Score=40.42 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHh
Q 019540 66 VDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (339)
Q Consensus 66 ~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQN 107 (339)
+.-.+.|+.+|...+.+.......|+.+.+|+..||+-||-.
T Consensus 15 p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 15 PPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 334578999999999999999999999999999999999953
No 80
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=88.61 E-value=0.99 Score=34.64 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=30.5
Q ss_pred CCcCCHHHHHHHHHHhhhh-cCCCHHHHHHHHHHhCCChHHHhhhhHh
Q 019540 61 KRRLSVDQVKALEKNFEVE-NKLEPERKVKLAQELGLQPRQVAVWFQN 107 (339)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~-~yPs~~~ReeLA~~LgLserQVqVWFQN 107 (339)
|++|+.++....-..+... .. ...++|+.+|++...|..|.+.
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 3558888776555555332 22 3568999999999999999853
No 81
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=80.93 E-value=3.8 Score=32.49 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=32.1
Q ss_pred hHHHhhhHHHHHHHhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHhhhh
Q 019540 108 RRARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEE 159 (339)
Q Consensus 108 RRaK~Krkq~e~e~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~~~ 159 (339)
||.+.|++..+. .+......|..+|..|+.+.+.|..|+..|+.-+.+.
T Consensus 28 rrSR~krk~r~~---e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 28 RKSRDKAKMRNL---ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 355555544433 3444566777778888888888888888888776653
No 82
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=80.40 E-value=2.5 Score=29.79 Aligned_cols=45 Identities=13% Similarity=0.274 Sum_probs=30.9
Q ss_pred CCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhH
Q 019540 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQ 106 (339)
+++|+.++...+...+. ..........++|+++|+++..|..|..
T Consensus 3 r~~ys~efK~~~~~~~~-~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYR-NDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHH-HCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHH-cCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 45699888766644443 3332112256899999999999999974
No 83
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=79.59 E-value=3 Score=32.39 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=28.1
Q ss_pred hHHHhhhHHHHHHHhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHhh
Q 019540 108 RRARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 108 RRaK~Krkq~e~e~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~ 157 (339)
||.+.|++..+.+ +......|..+|..|..+.+.|..|+..|+.-+.
T Consensus 28 krSR~krk~r~~e---~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 28 RKSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555544333 3445556666677777777777777777665543
No 84
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=78.51 E-value=5.4 Score=31.72 Aligned_cols=50 Identities=22% Similarity=0.414 Sum_probs=37.7
Q ss_pred CCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHH
Q 019540 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (339)
Q Consensus 59 rKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK 111 (339)
++|+++|.++...+-..+.....+. ..++|+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 3566799999877777765555443 2368999999999999999776653
No 85
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=76.77 E-value=3.3 Score=29.89 Aligned_cols=34 Identities=26% Similarity=0.506 Sum_probs=27.9
Q ss_pred HHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHhhh
Q 019540 125 KANYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 125 ka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~~ 158 (339)
...+++|+.++..++...+.|.+++++|+.+|.+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577888888888888888888888888888763
No 86
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=76.10 E-value=15 Score=29.36 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=40.5
Q ss_pred CCChHHHhhhhHhhHHHh-------hhHHHHHHHhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHhh
Q 019540 95 GLQPRQVAVWFQNRRARW-------KTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 95 gLserQVqVWFQNRRaK~-------Krkq~e~e~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~ 157 (339)
||+..+|.-|=|-||+-. -+.+...+...|......|..+-+.+..|+..+..|...+|.+..
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888777776665321 111222334555566667777777778888888888887777764
No 87
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=73.50 E-value=12 Score=28.31 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=30.1
Q ss_pred CCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhH
Q 019540 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQ 106 (339)
++++|+.++....-..+. ... ...++|+++|++...|..|..
T Consensus 19 ~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 19 PLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 455699888655545553 222 255889999999999999974
No 88
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=73.43 E-value=9.8 Score=27.55 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=24.2
Q ss_pred HhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHh
Q 019540 121 YGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 121 ~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl 156 (339)
...|....+.|...+..|..+...|..|+..|+..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666677777777777777777777654
No 89
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=71.06 E-value=12 Score=27.42 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=25.3
Q ss_pred HhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHh
Q 019540 121 YGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 121 ~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl 156 (339)
...+......|...+..|..+...|..|+..|+.-+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777777777778888877777654
No 90
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=69.92 E-value=9.9 Score=24.04 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=28.9
Q ss_pred CcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHh
Q 019540 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (339)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQN 107 (339)
+.++.++...+...+... . ...++|+.+|++..-|..|...
T Consensus 4 ~~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 347777775555555332 2 2568899999999999999853
No 91
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=68.83 E-value=7.3 Score=28.82 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=18.3
Q ss_pred HHhhhhhhhHhHHHHHHHHHHHHHHhhh
Q 019540 131 LKLNYDSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 131 Lk~~~dsl~~ene~L~~E~~~Lk~kl~~ 158 (339)
|......|..+|..|..++..|++.+.+
T Consensus 35 Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555677888888888888877653
No 92
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=68.38 E-value=15 Score=26.85 Aligned_cols=36 Identities=33% Similarity=0.333 Sum_probs=22.2
Q ss_pred HhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHh
Q 019540 121 YGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 121 ~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl 156 (339)
...|....+.|...+..|..+...|..|+..|+..+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666666554
No 93
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=66.61 E-value=14 Score=27.99 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=14.7
Q ss_pred HHHHhhhhhhhHhHHHHHHHHHHHHHHh
Q 019540 129 DALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 129 d~Lk~~~dsl~~ene~L~~E~~~Lk~kl 156 (339)
..|...+..+..+|..|+.++..|..++
T Consensus 39 ~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 39 VTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555566665555555544
No 94
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=63.86 E-value=15 Score=27.71 Aligned_cols=46 Identities=13% Similarity=0.235 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
++..|..+|.-.|.... .-.+||..||++...|+.+...-|.+.|+
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 77777777766543322 35689999999999999988755555554
No 95
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=63.39 E-value=8.1 Score=28.13 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=15.3
Q ss_pred HHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHH
Q 019540 124 LKANYDALKLNYDSLQHDNEALLKEIRELKSK 155 (339)
Q Consensus 124 lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~k 155 (339)
|....+.|...+..|..+...|..|+..|+..
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555443
No 96
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=61.89 E-value=3.7 Score=26.78 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHh
Q 019540 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (339)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQN 107 (339)
.++.++...+...+... . ...+||+.+|++..-|..|+..
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHH
Confidence 36666666555555432 2 3568899999999999999864
No 97
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=60.18 E-value=62 Score=25.62 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
+++.+..++.-.|.... .-.++|..+|+++..|+.+...-|.+-|.
T Consensus 26 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 66777777766543322 34689999999999999998766666554
No 98
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=59.77 E-value=65 Score=25.67 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
+++.|..++.-.|.... .-.++|..+|+++..|+.|...-|.+.|+
T Consensus 23 L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 23 LTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp SCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 77788888776654332 24689999999999999999866666554
No 99
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=58.86 E-value=23 Score=26.84 Aligned_cols=51 Identities=29% Similarity=0.324 Sum_probs=33.6
Q ss_pred hhhhHhhHHHhhhHHHHHHHhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHH
Q 019540 102 AVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELK 153 (339)
Q Consensus 102 qVWFQNRRaK~Krkq~e~e~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk 153 (339)
+-=|..|+.+. -+.++.....+...+..+..++..|..++..|..|+..|+
T Consensus 20 QRafReRK~~~-i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 20 QRAFRKRKEDH-LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344343332 3355666667777777788888888888888888887654
No 100
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=56.80 E-value=12 Score=26.01 Aligned_cols=46 Identities=17% Similarity=0.046 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
+++.+..+|.-.|... ..-.++|..+|+++..|+.|...-|.+.++
T Consensus 16 L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 16 LTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 7888888887765332 234689999999999999988755555443
No 101
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=56.62 E-value=48 Score=25.41 Aligned_cols=47 Identities=15% Similarity=0.291 Sum_probs=37.1
Q ss_pred CCCcCCHHHHHHHHHHhhh-----hcCCCHHHHHHHHHHhCC--ChHHHhhhhH
Q 019540 60 KKRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGL--QPRQVAVWFQ 106 (339)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~-----~~yPs~~~ReeLA~~LgL--serQVqVWFQ 106 (339)
+...++.+|+..|...|.. +.+.+..+...+.+.+|. +..+|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3445999999999999975 458999998888888874 6677777774
No 102
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=53.15 E-value=31 Score=27.03 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=34.7
Q ss_pred CCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhh
Q 019540 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~K 113 (339)
...+++.+.++|.-.++ .+ .-.++|..||+++.-|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~--G~----s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE--GF----LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHH--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 34599999999977543 22 2378999999999999998875544443
No 103
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=52.34 E-value=28 Score=27.48 Aligned_cols=45 Identities=13% Similarity=0.030 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
+++.+..+|. .|- ....-.++|..||++...|+.+...-|.+.|+
T Consensus 110 L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 110 FSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp SCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5666666665 322 22245689999999999999988755555443
No 104
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=51.53 E-value=36 Score=26.06 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=31.4
Q ss_pred CCcCCHHHHHHHHHHh-hhh-cCCCH-HHHHHHHHHhCCChHHHhhhhH
Q 019540 61 KRRLSVDQVKALEKNF-EVE-NKLEP-ERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 61 RrRfT~~Ql~~LE~~F-~~~-~yPs~-~~ReeLA~~LgLserQVqVWFQ 106 (339)
+++|+.++....-..+ ... .+.+. ....++|.++|+++..|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4569988776544444 322 13332 3567899999999999999975
No 105
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=50.54 E-value=1.1e+02 Score=25.37 Aligned_cols=36 Identities=8% Similarity=0.146 Sum_probs=25.9
Q ss_pred CCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhh
Q 019540 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNR 108 (339)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNR 108 (339)
..|.|+.+++..|.. ....+.+|++...|+..+...
T Consensus 37 g~R~Y~~~dl~~l~~-------------I~~lr~~G~sL~eIk~~l~~~ 72 (142)
T 3gp4_A 37 GVRKFGAEDLRWILF-------------TRQMRRAGLSIEALIDYLALF 72 (142)
T ss_dssp SCBCBCHHHHHHHHH-------------HHHHHHTTCCHHHHHHHHHHH
T ss_pred CCeeeCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHHHH
Confidence 345599999999833 233478888888888877644
No 106
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=50.52 E-value=25 Score=26.86 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
.+++.|..+|.-.++ .+ ...++|..||+++..|+.+..+-|.|.+.
T Consensus 27 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLLSE--GL----TNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 489999999987532 22 23689999999999999988766655554
No 107
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=49.34 E-value=54 Score=27.62 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=22.4
Q ss_pred HHHHHhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHhhhh
Q 019540 117 LERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEE 159 (339)
Q Consensus 117 ~e~e~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~~~ 159 (339)
..++...+|...-.++...+.+..+++.|++++..|+.+..+.
T Consensus 87 ~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 87 KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555544443
No 108
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=49.26 E-value=41 Score=26.32 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=16.8
Q ss_pred HHhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHh
Q 019540 120 DYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 120 e~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl 156 (339)
+.+.||..+..|..++..++...+.|..|+.+|++..
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444444444444444443333333555555555543
No 109
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=47.49 E-value=29 Score=24.28 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=34.4
Q ss_pred CcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
..+++.|..+|...+ ..+ ...++|..+|+++..|+.+...-+.+.+.
T Consensus 10 ~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 10 PLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 348999999997742 222 34689999999999999988755554443
No 110
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=47.10 E-value=90 Score=25.93 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=27.3
Q ss_pred CCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhH
Q 019540 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRR 109 (339)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRR 109 (339)
..|.|+.+++..|. .....+.+|++...|+.++...+
T Consensus 51 g~R~Y~~~dl~~l~-------------~I~~lr~~G~sL~eIk~~l~~~~ 87 (148)
T 3gpv_A 51 GDRIFNEEALKYLE-------------MILCLKNTGMPIQKIKQFIDWSM 87 (148)
T ss_dssp CCEEBCHHHHHHHH-------------HHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CCeecCHHHHHHHH-------------HHHHHHHcCCCHHHHHHHHHhhh
Confidence 34559999999983 23334788999999998887544
No 111
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=45.59 E-value=21 Score=25.55 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
+++.+..+|.-.+ ..+ ...++|..+|+++..|+.+...-+.|.+.
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 7788888887643 222 23589999999999999988766665554
No 112
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=44.00 E-value=37 Score=25.14 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
.++..+.++|.-.+ .. ..-.++|..+|++...|+.+..+-+.|.+.
T Consensus 21 ~Lt~~e~~vl~l~~--~g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 21 QLTPRERDILKLIA--QG----LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GSCHHHHHHHHHHT--TT----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 49999999998743 22 235689999999999999988765555554
No 113
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=43.96 E-value=33 Score=25.57 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
+++.+..+|...|-.... ....-.++|..+|+++..|+.|...-+.+.|.
T Consensus 19 L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 788888998887752100 11234588999999999999988655555543
No 114
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=43.50 E-value=41 Score=23.99 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhh
Q 019540 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~K 113 (339)
+++.+..+|...|..... ....-.++|..+|+++..|+.|...-+.+.+
T Consensus 11 L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 788999999888752100 0112458999999999999998865554444
No 115
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=42.71 E-value=25 Score=25.38 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=23.7
Q ss_pred hhHHHHhhhhhhhHhHHHHHHHHHHHHHHhhhhhcc
Q 019540 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLNEENTE 162 (339)
Q Consensus 127 ~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~~~~~e 162 (339)
.|+.|-...+.++.||..|++|++.-...+.+.+.+
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~e 39 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETE 39 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhh
Confidence 466666666677777777777777666666655443
No 116
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=42.25 E-value=27 Score=24.62 Aligned_cols=50 Identities=8% Similarity=0.161 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
+++.+..+|.-.|....+- ...-.++|..+|+++..|+.+...-+.+.|.
T Consensus 6 L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred CCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 7888889988887321111 1224689999999999999988655555443
No 117
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=40.49 E-value=1.1e+02 Score=24.03 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=34.2
Q ss_pred HHHhhhhHhhHHHhhhHHHHHHHhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHh
Q 019540 99 RQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 99 rQVqVWFQNRRaK~Krkq~e~e~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl 156 (339)
.++..|-+......+. .-+.....++...+.+..++..+..+...|..++.++|.+|
T Consensus 37 ~~i~~l~~~~~~~~~~-~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 37 AELEQLKGQGKSRLGD-LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhccCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4455565444433332 23455566666666677777777777777777777777654
No 118
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=39.89 E-value=43 Score=25.03 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
.+++.+..+|.-.+. .+ .-.++|..+|+++..|+.+..+-|.|.+.
T Consensus 29 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 29 MLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 389999999977432 22 23478999999999999988766655554
No 119
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=38.70 E-value=1.1e+02 Score=23.93 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=23.7
Q ss_pred HHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHhhhh
Q 019540 125 KANYDALKLNYDSLQHDNEALLKEIRELKSKLNEE 159 (339)
Q Consensus 125 ka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~~~ 159 (339)
+.....+......|..+|..|+.++..|+.++...
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566667777777777777777777766543
No 120
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=36.35 E-value=36 Score=28.76 Aligned_cols=46 Identities=15% Similarity=0.069 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
+++.+..+|.-.|... ..-.+||..+|+++..|+.+...-|.+.|+
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 6677777776665322 234589999999999999988755555543
No 121
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.79 E-value=80 Score=31.14 Aligned_cols=8 Identities=50% Similarity=0.493 Sum_probs=2.9
Q ss_pred HhHHHHHH
Q 019540 140 HDNEALLK 147 (339)
Q Consensus 140 ~ene~L~~ 147 (339)
.+.+.+++
T Consensus 544 ~~~~~le~ 551 (597)
T 3oja_B 544 QENIALEK 551 (597)
T ss_dssp HHHHHHHH
T ss_pred hhhHHHHH
Confidence 33333333
No 122
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=34.40 E-value=59 Score=26.59 Aligned_cols=46 Identities=13% Similarity=-0.058 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
+++.+..+|.-.|-.. ..-.++|..+|+++..|+.+...-|.+.|+
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5666666665544322 124589999999999999988755555443
No 123
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.85 E-value=47 Score=26.89 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=28.3
Q ss_pred HhhHHHHhhhhhhhHhHHHHHHHHHHHHHHhhhhh
Q 019540 126 ANYDALKLNYDSLQHDNEALLKEIRELKSKLNEEN 160 (339)
Q Consensus 126 a~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~~~~ 160 (339)
..++.|+...++|..|+..|++++..|+.+|....
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~ 46 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA 46 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677778888888999999999999988886643
No 124
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=33.83 E-value=1.3e+02 Score=21.65 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=21.6
Q ss_pred HhhHHHHhhhhhhhHhHHHHHHHHHHHHHHhh
Q 019540 126 ANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 126 a~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~ 157 (339)
...+.|....+.+..+|..|..++..|+....
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777776666544
No 125
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=32.49 E-value=68 Score=24.93 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=31.1
Q ss_pred CcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHh
Q 019540 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (339)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQN 107 (339)
+.++.++...+...+... . ...++|+.+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 458888877776666432 2 2467899999999999999974
No 126
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=32.26 E-value=86 Score=27.74 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=26.1
Q ss_pred CCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhh
Q 019540 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNR 108 (339)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNR 108 (339)
.|.++..|+..| ......+.+|++..+|+..+.++
T Consensus 42 ~R~y~~~~~~~l-------------~~i~~l~~~g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 42 YRYYTDSQLIHL-------------DLIKSLKYIGTPLEEMKKAQDLE 76 (278)
T ss_dssp CEEEETGGGGHH-------------HHHHHHHHTTCCHHHHHHHTTSC
T ss_pred ccccCHHHHHHH-------------HHHHHHHHCCCCHHHHHHHHHhC
Confidence 345888888887 33344588899999999888765
No 127
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=31.95 E-value=8.8 Score=31.53 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=27.6
Q ss_pred CCChHHHhhhhHhhHHHhhhH--------HHHHHHhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHH
Q 019540 95 GLQPRQVAVWFQNRRARWKTK--------QLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSK 155 (339)
Q Consensus 95 gLserQVqVWFQNRRaK~Krk--------q~e~e~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~k 155 (339)
||++.+|.-+=|-||.- |.+ ....+...|......|+.+.+.|..|+..|..|...+|.+
T Consensus 27 ~Ls~~e~~~lK~~RR~l-KNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k 94 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTL-KNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSK 94 (107)
T ss_dssp TCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSC
T ss_pred CCCHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777665555444321 111 1112233333344444555555555555555555444443
No 128
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=31.68 E-value=73 Score=25.73 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=32.0
Q ss_pred CCCCcCCHHHHHHHHHHhhh-----hcCCCHHHHHHHHHHhCCChH
Q 019540 59 EKKRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPR 99 (339)
Q Consensus 59 rKRrRfT~~Ql~~LE~~F~~-----~~yPs~~~ReeLA~~LgLser 99 (339)
+++.++|.+|+..|...|.. ..+.+..+...+.+.||..+.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 45566999999999999975 457888888888888886543
No 129
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.62 E-value=1.4e+02 Score=23.29 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=25.4
Q ss_pred HHHHHHHhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHhh
Q 019540 115 KQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 115 kq~e~e~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~ 157 (339)
..++.+...+.+..+.++...+.+..+|+.|+.|...-++++.
T Consensus 30 eELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 30 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666666655555543
No 130
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.92 E-value=45 Score=22.56 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=21.8
Q ss_pred HHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 88 VKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 88 eeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
.++|..+|+++..|+.+..+-+.|.+.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 589999999999999988765555544
No 131
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=29.65 E-value=1.9e+02 Score=22.13 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=23.3
Q ss_pred HHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHhhh
Q 019540 125 KANYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 125 ka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~~ 158 (339)
+.....+......|..+|..|+.++..|+.++..
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556667777777888888887777776543
No 132
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=29.63 E-value=1.7e+02 Score=25.58 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHhh
Q 019540 64 LSVDQVKALEKNFE 77 (339)
Q Consensus 64 fT~~Ql~~LE~~F~ 77 (339)
+|++|...+.+.++
T Consensus 68 LT~EQq~ql~~I~~ 81 (175)
T 3lay_A 68 LTTEQQATAQKIYD 81 (175)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555443
No 133
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=29.48 E-value=57 Score=26.79 Aligned_cols=48 Identities=17% Similarity=0.376 Sum_probs=35.7
Q ss_pred CCCCCcCCHHHHHHHHHHh-hhhcCCCHHHHHHHHH----Hh--CCChHHHhhhhHhh
Q 019540 58 SEKKRRLSVDQVKALEKNF-EVENKLEPERKVKLAQ----EL--GLQPRQVAVWFQNR 108 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F-~~~~yPs~~~ReeLA~----~L--gLserQVqVWFQNR 108 (339)
+++|+++|.+|...+-..+ +.++..... +||+ ++ +++...|.-|..++
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5667789999999998888 566665443 4555 77 77888898888654
No 134
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.09 E-value=1.3e+02 Score=25.25 Aligned_cols=46 Identities=30% Similarity=0.268 Sum_probs=30.0
Q ss_pred HHHHHHHhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHhhhhh
Q 019540 115 KQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEEN 160 (339)
Q Consensus 115 kq~e~e~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~~~~ 160 (339)
..++.+...+......|+++..+.+.+.+.+.+++.+|+.+.....
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666777777777777777777777777655443
No 135
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=28.43 E-value=70 Score=21.18 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=18.7
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhh
Q 019540 134 NYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 134 ~~dsl~~ene~L~~E~~~Lk~kl~ 157 (339)
..+.+..+|..|+.|+.+||+-+.
T Consensus 9 kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 9 KVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh
Confidence 345667788999999999988664
No 136
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=28.17 E-value=1.5e+02 Score=21.01 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=16.2
Q ss_pred HHhhhhhhhHhHHHHHHHHHHHHHHh
Q 019540 131 LKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 131 Lk~~~dsl~~ene~L~~E~~~Lk~kl 156 (339)
|......|..+|..|..++..|+..+
T Consensus 27 LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 27 LENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445556667777777777666544
No 137
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=27.37 E-value=27 Score=23.53 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChHHHhhhhHhhH
Q 019540 87 KVKLAQELGLQPRQVAVWFQNRR 109 (339)
Q Consensus 87 ReeLA~~LgLserQVqVWFQNRR 109 (339)
..+||+.+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998654
No 138
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=27.25 E-value=34 Score=24.62 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChHHHhhhhHhhH
Q 019540 87 KVKLAQELGLQPRQVAVWFQNRR 109 (339)
Q Consensus 87 ReeLA~~LgLserQVqVWFQNRR 109 (339)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 56899999999999999998765
No 139
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=26.98 E-value=1.7e+02 Score=23.84 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=35.7
Q ss_pred HHhhhHHHHHHHhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHhhhhhc
Q 019540 110 ARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEENT 161 (339)
Q Consensus 110 aK~Krkq~e~e~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~~~~~ 161 (339)
-|.+-...++.+..++..+.....+.+.++.....|..+...++..+.++.+
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~ 86 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREE 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666666666666777777778888888888888877653
No 140
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=26.73 E-value=49 Score=25.37 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=22.2
Q ss_pred HHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHH
Q 019540 69 VKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 69 l~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~ 117 (339)
+..++-.|+.++||.++--. |- =.|||.+|+.++.
T Consensus 18 vRiIkiLyQSNP~P~p~GTr-----------qa---RRNRRRRWR~RQr 52 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTR-----------QA---RRNRRRRWRERQR 52 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCH-----------HH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCch-----------HH---HHHHHHHHHHHHH
Confidence 34455568889999854111 11 1589999997654
No 141
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=26.59 E-value=29 Score=23.50 Aligned_cols=24 Identities=13% Similarity=0.392 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChHHHhhhhHhhHH
Q 019540 87 KVKLAQELGLQPRQVAVWFQNRRA 110 (339)
Q Consensus 87 ReeLA~~LgLserQVqVWFQNRRa 110 (339)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 468999999999999999987543
No 142
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=26.58 E-value=1.2e+02 Score=22.88 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=32.6
Q ss_pred CcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHH
Q 019540 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (339)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK 111 (339)
..+|..+..+|.-.+ ..+ ...+||..||++++-|+....+=+.|
T Consensus 28 ~~Lt~rE~~Vl~l~~--~G~----s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 28 DVLTPRECLILQEVE--KGF----TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp -CCCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 349999999997766 222 35689999999999998876544433
No 143
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.57 E-value=80 Score=29.44 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=15.8
Q ss_pred HHHHhhhhhhhHhHHHHHHHHHHHHHHhhhh
Q 019540 129 DALKLNYDSLQHDNEALLKEIRELKSKLNEE 159 (339)
Q Consensus 129 d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~~~ 159 (339)
+.|...+..|..+...+++|+.+||+++...
T Consensus 64 ~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 64 DSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444455555555666666555443
No 144
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=26.35 E-value=1.5e+02 Score=23.31 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=19.4
Q ss_pred hhHHHHhhhhhhhHhHHHHHHHHHHHHHH
Q 019540 127 NYDALKLNYDSLQHDNEALLKEIRELKSK 155 (339)
Q Consensus 127 ~~d~Lk~~~dsl~~ene~L~~E~~~Lk~k 155 (339)
.+..|+...+.++.++..|+.++.+|+.-
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777777777777653
No 145
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=26.20 E-value=1.5e+02 Score=21.12 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=13.2
Q ss_pred hHHHHhhhhhhhHhHHHHHHHHHHHHHHh
Q 019540 128 YDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 128 ~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl 156 (339)
...|...|..|......-+.++..|++.+
T Consensus 18 l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 18 IDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444455555555544
No 146
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=26.20 E-value=65 Score=23.42 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHhhh-----hcCCCHHHHHHHHHHhCCChHHHhhhhH
Q 019540 64 LSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~-----~~yPs~~~ReeLA~~LgLserQVqVWFQ 106 (339)
++.++...|...|.. +.+.+..+...+...+|++..+|+.+|.
T Consensus 21 l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 21 GDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 888999999999874 4478888888888889998888888775
No 147
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=25.88 E-value=70 Score=21.25 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhH
Q 019540 66 VDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 66 ~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQ 106 (339)
+++...+...+.. .+ ...++|+.+|++..-|..|..
T Consensus 18 ~~~~~~i~~l~~~-g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKM-GY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHT-TC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 5555555555432 22 356899999999999999874
No 148
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.76 E-value=1.8e+02 Score=20.71 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=22.2
Q ss_pred hhHHHHhhhhhhhHhHHHHHHHHHHHHHHhh
Q 019540 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 127 ~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~ 157 (339)
..+.|......+..+|..|..++..|+..+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777776654
No 149
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.45 E-value=80 Score=22.49 Aligned_cols=26 Identities=4% Similarity=0.074 Sum_probs=14.0
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhhhh
Q 019540 134 NYDSLQHDNEALLKEIRELKSKLNEE 159 (339)
Q Consensus 134 ~~dsl~~ene~L~~E~~~Lk~kl~~~ 159 (339)
+.+.|+.|++.|+.++..|+.++.+.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554443
No 150
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=25.31 E-value=95 Score=22.86 Aligned_cols=43 Identities=7% Similarity=0.096 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHhhh-----hcCCCHHHHHHHHHHhCCChHHHhhhhH
Q 019540 64 LSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~-----~~yPs~~~ReeLA~~LgLserQVqVWFQ 106 (339)
++.++...+...|.. +.+.+..+-..+.+.+|++...++.+|.
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 678899999999874 4467788877777888988877766653
No 151
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=24.96 E-value=46 Score=27.66 Aligned_cols=34 Identities=29% Similarity=0.554 Sum_probs=21.6
Q ss_pred HHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhhHHH
Q 019540 70 KALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 70 ~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Krkq~ 117 (339)
..++-.|+.++||.++-- +|- =.|||.+||.++.
T Consensus 16 RiIkiLyQSNPyP~peGT-----------Rqa---RRNRRRRWR~RQr 49 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGT-----------RQA---RRNRRRRWRERQR 49 (115)
T ss_dssp HHHHHHHHSSCCCCCCCC-----------TTT---HHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCc-----------hhh---hHhHHHHHHHHHH
Confidence 344556888999976411 111 1599999998654
No 152
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=24.47 E-value=33 Score=23.86 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChHHHhhhhHhhH
Q 019540 87 KVKLAQELGLQPRQVAVWFQNRR 109 (339)
Q Consensus 87 ReeLA~~LgLserQVqVWFQNRR 109 (339)
..+||+.+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999998765
No 153
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=24.39 E-value=32 Score=23.56 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.7
Q ss_pred HHHHHHHhCCChHHHhhhhHhhHH
Q 019540 87 KVKLAQELGLQPRQVAVWFQNRRA 110 (339)
Q Consensus 87 ReeLA~~LgLserQVqVWFQNRRa 110 (339)
..+||+.+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999987654
No 154
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=23.89 E-value=42 Score=27.13 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhh
Q 019540 67 DQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 67 ~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~K 113 (339)
.-+..-...|....| . .....||++.|++..-|-.+|.+|-.-..
T Consensus 19 ~Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L~~ 63 (194)
T 2q24_A 19 KILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREALIE 63 (194)
T ss_dssp HHHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 334555666888888 5 77889999999999999999998755443
No 155
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=23.87 E-value=97 Score=26.92 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhh
Q 019540 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~K 113 (339)
.+|+.+.++|.-.++ .+ .-.++|..||++++-|+.+..+-+.|..
T Consensus 175 ~Lt~~e~~vl~~~~~--g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 175 MLSPREMLCLVWASK--GK----TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp SCCHHHHHHHHHHHT--TC----CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 478888887755432 21 2358999999999999998876555544
No 156
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=23.76 E-value=2.4e+02 Score=23.02 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=8.8
Q ss_pred hhHhHHHHHHHHHHHHHHhhh
Q 019540 138 LQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 138 l~~ene~L~~E~~~Lk~kl~~ 158 (339)
|+.+...|+..+..++.++..
T Consensus 40 Lq~El~~lr~~~~~l~~~iRe 60 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRE 60 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 157
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=23.70 E-value=1.4e+02 Score=23.07 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=31.2
Q ss_pred CcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhC--CChHHHhhhhHhhH
Q 019540 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELG--LQPRQVAVWFQNRR 109 (339)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~Lg--LserQVqVWFQNRR 109 (339)
+.++.++...+... ...+..+. .+|+..+| ++...|..|+....
T Consensus 59 ~~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g 104 (141)
T 1u78_A 59 KALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSG 104 (141)
T ss_dssp CSSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCC
Confidence 34888888777766 44554444 46788888 78999999996443
No 158
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.12 E-value=89 Score=20.98 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=12.7
Q ss_pred HHHHhhhhhhhHhHHHHHHHHHHHH
Q 019540 129 DALKLNYDSLQHDNEALLKEIRELK 153 (339)
Q Consensus 129 d~Lk~~~dsl~~ene~L~~E~~~Lk 153 (339)
+.|+.+-+.-+.+..+|+.||.+|+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344444444455555666655554
No 159
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=22.83 E-value=37 Score=23.56 Aligned_cols=24 Identities=13% Similarity=0.392 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChHHHhhhhHhhHH
Q 019540 87 KVKLAQELGLQPRQVAVWFQNRRA 110 (339)
Q Consensus 87 ReeLA~~LgLserQVqVWFQNRRa 110 (339)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 468999999999999999976543
No 160
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.77 E-value=48 Score=23.75 Aligned_cols=25 Identities=16% Similarity=0.424 Sum_probs=11.6
Q ss_pred HHhhhhhhhHhHHHHHHHHHHHHHH
Q 019540 131 LKLNYDSLQHDNEALLKEIRELKSK 155 (339)
Q Consensus 131 Lk~~~dsl~~ene~L~~E~~~Lk~k 155 (339)
+......+..+|..|+.++.+|+++
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445555666666666655544
No 161
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=22.70 E-value=1e+02 Score=22.90 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHhhh-----hcCCCHHHHHHHHHHhCCChHHHhhhhH
Q 019540 64 LSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~-----~~yPs~~~ReeLA~~LgLserQVqVWFQ 106 (339)
++.++...++..|.. ..+.+..+-..+...+|++...++.+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567888899999864 3477888877777888888887776664
No 162
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.53 E-value=2.1e+02 Score=20.27 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=19.6
Q ss_pred HhhHHHHhhhhhhhHhHHHHHHHHHHHHHHhh
Q 019540 126 ANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 126 a~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~ 157 (339)
...+.|....+.+..+|..|..++..|+.++.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666543
No 163
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=22.17 E-value=2.6e+02 Score=23.34 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=8.5
Q ss_pred HhhHHHhhhHHHHHHHhHH
Q 019540 106 QNRRARWKTKQLERDYGVL 124 (339)
Q Consensus 106 QNRRaK~Krkq~e~e~~~l 124 (339)
+|.+.+.+...+..+...+
T Consensus 23 ~n~~l~~eN~~Lk~e~e~l 41 (155)
T 2oto_A 23 QNIRLRHENKDLKARLENA 41 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4555554444444444333
No 164
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.09 E-value=1.1e+02 Score=27.14 Aligned_cols=38 Identities=24% Similarity=0.061 Sum_probs=27.0
Q ss_pred HHhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHhh
Q 019540 120 DYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 120 e~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~ 157 (339)
..+..++-.+.+......|+.+|+.|+++|++|+.+..
T Consensus 139 p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 139 PAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677777777788888888888888877654
No 165
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=21.99 E-value=3.2e+02 Score=22.08 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=26.8
Q ss_pred CCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhH
Q 019540 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRR 109 (339)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRR 109 (339)
.|.|+..++..|. .....+.+|++...|+.++....
T Consensus 36 ~R~Y~~~dl~~l~-------------~I~~lr~~G~sl~eI~~~l~~~~ 71 (135)
T 1q06_A 36 YRTYTQQHLNELT-------------LLRQARQVGFNLEESGELVNLFN 71 (135)
T ss_dssp CEECCHHHHHHHH-------------HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHH-------------HHHHHHHCCCCHHHHHHHHHhhh
Confidence 4559999999883 23335788999999999886543
No 166
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=21.92 E-value=40 Score=23.52 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChHHHhhhhHhhH
Q 019540 87 KVKLAQELGLQPRQVAVWFQNRR 109 (339)
Q Consensus 87 ReeLA~~LgLserQVqVWFQNRR 109 (339)
..+||+.+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46899999999999999998764
No 167
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=21.89 E-value=2.1e+02 Score=21.30 Aligned_cols=41 Identities=7% Similarity=-0.014 Sum_probs=30.0
Q ss_pred cCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhh
Q 019540 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNR 108 (339)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNR 108 (339)
.++.++...+...+.. .+ + ..++|+.+|++...|..|+..-
T Consensus 17 ~~s~~~r~~i~~~~~~-g~-s---~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD-GI-R---PCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCCHHHHHHHHHHHHT-TC-C---HHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-CC-C---HHHHHHHHCcCHHHHHHHHHHH
Confidence 4888777666666642 22 2 4578999999999999999643
No 168
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=21.78 E-value=1.3e+02 Score=24.43 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhH
Q 019540 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 55 ~k~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQ 106 (339)
+......++++.++...+...+.... ...++|+.+|++...|..|++
T Consensus 17 g~~~~~~~~~s~e~r~~ii~l~~~G~-----s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 17 GGAFVNGRPLPEVVRQRIVDLAHQGV-----RPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp CCTTSSSCSSCHHHHHHHHHHHHHTC-----CHHHHHHHHTCCSHHHHHHHC
T ss_pred CCcCCCCCCCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
No 169
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.56 E-value=96 Score=23.60 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=22.1
Q ss_pred hHHHHhhhhhhhHhHHHHHHHHHHHHHHhh
Q 019540 128 YDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 128 ~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~ 157 (339)
...|+.....+..+++.|+.++..|+.+|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566667777788888888888887765
No 170
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=21.04 E-value=31 Score=31.73 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=20.1
Q ss_pred HHhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHhhhhhcccccCccc
Q 019540 120 DYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEENTESNISVKQ 169 (339)
Q Consensus 120 e~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~~~~~e~~~s~k~ 169 (339)
.++.+...++.+......++.++..+++++++|+.++.+.+.+...+.++
T Consensus 142 ~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~ 191 (250)
T 2ve7_C 142 TYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVY 191 (250)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 34444445555555555666666666666666666655554444434333
No 171
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=20.83 E-value=2.3e+02 Score=20.06 Aligned_cols=37 Identities=22% Similarity=0.109 Sum_probs=22.1
Q ss_pred HhHHHHhhHHHHhhhhhhhHhHHHHHHHHHHHHHHhh
Q 019540 121 YGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 121 ~~~lka~~d~Lk~~~dsl~~ene~L~~E~~~Lk~kl~ 157 (339)
...+|+.|+.|-.....++.....+..|+.+|+.-|.
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 3455566666665556666666666666666665443
No 172
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=20.78 E-value=42 Score=22.76 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=20.6
Q ss_pred HHHHHHHhCCChHHHhhhhHhhHH
Q 019540 87 KVKLAQELGLQPRQVAVWFQNRRA 110 (339)
Q Consensus 87 ReeLA~~LgLserQVqVWFQNRRa 110 (339)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 468999999999999999877654
No 173
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=20.44 E-value=43 Score=23.42 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChHHHhhhhHhhH
Q 019540 87 KVKLAQELGLQPRQVAVWFQNRR 109 (339)
Q Consensus 87 ReeLA~~LgLserQVqVWFQNRR 109 (339)
..+||+.+|++...|.-|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45899999999999999998763
No 174
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=20.38 E-value=2e+02 Score=22.40 Aligned_cols=50 Identities=8% Similarity=0.169 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCChHHHhhhhHhhHHHhhh
Q 019540 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLserQVqVWFQNRRaK~Kr 114 (339)
+++.|..++.-.|..... ....-.++|..+|++...|+.+-..-+.+.|.
T Consensus 20 Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 677888888777743211 11245689999999999998877544444443
No 175
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=20.19 E-value=46 Score=22.92 Aligned_cols=23 Identities=26% Similarity=0.140 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHhhhhHhhH
Q 019540 87 KVKLAQELGLQPRQVAVWFQNRR 109 (339)
Q Consensus 87 ReeLA~~LgLserQVqVWFQNRR 109 (339)
..+||+.+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46799999999999999997753
Done!