BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019541
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 103/259 (39%), Gaps = 38/259 (14%)
Query: 74 VGGILSCGLTHTAVTPLDLVKCNMQIDPV--------KYKSISSGFGVLLKEQGIRGFFR 125
+ G ++ ++ TAV P++ VK +Q+ +YK I + KEQG F+R
Sbjct: 12 LAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWR 71
Query: 126 GWVPTLLGYSAQGACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYLAGS-ASAEFIADVAL 184
G + ++ Y A + G + ++ Y AG+ AS +L
Sbjct: 72 GNLANVIRYFPTQALNFAFKDKYKQIF--LGGVDRHKQFWR--YFAGNLASGGAAGATSL 127
Query: 185 C---PFEAVKVRVQTQPGFA------RGLGDGLPKFVKSEGALGLYKGIVPLWGRQIPYT 235
C P + + R+ G GLG+ + K KS+G GLY+G I Y
Sbjct: 128 CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYR 187
Query: 236 MMKFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNL---V 292
F ++T M+ P PK+ + + +S+ +VS+P D + +
Sbjct: 188 AAYFGVYDTAKGML-----PDPKN-----VHIIVSWMIAQTVTAVAGLVSYPFDTVRRRM 237
Query: 293 SFLNNAKGATV---GDVSC 308
+ KGA + G V C
Sbjct: 238 MMQSGRKGADIMYTGTVDC 256
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 20/129 (15%)
Query: 172 GSASAEFIADVALCPFEAVKVRVQTQ---PGFAR--------GLGDGLPKFVKSEGALGL 220
G+ +A IAD+ P + KVR+Q Q G R G+ + V++EG L
Sbjct: 7 GAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSL 66
Query: 221 YKGIVPLWGRQIPYTMMKFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVF 280
Y G+V RQ+ + ++ ++++ + K S+ +G G G
Sbjct: 67 YNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG---------SEHAGIGSRLLAGSTTGAL 117
Query: 281 CAIVSHPAD 289
V+ P D
Sbjct: 118 AVAVAQPTD 126
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 85/232 (36%), Gaps = 36/232 (15%)
Query: 89 PLDLVKCNMQID-----------PVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQ 137
PLD K +QI +Y+ + +++ +G R + G V L +
Sbjct: 21 PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSF 80
Query: 138 GACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQ 197
+ + G E+A L LAGS + VA P + VKVR Q Q
Sbjct: 81 ASVRIGLYDSVKQFYTK--GSEHAGIGSRL--LAGSTTGALAVAVAQ-PTDVVKVRFQAQ 135
Query: 198 PGFARGLG--------DGLPKFVKSEGALGLYKGIVPLWGRQIPYTMMKFASFETIVEMI 249
AR G + + EG GL+KG P R + +++ I + +
Sbjct: 136 ---ARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTL 192
Query: 250 YKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNL-VSFLNNAKG 300
K + T C F + AG +++ P D + ++N+A G
Sbjct: 193 LKANLMTDDLPC--------HFTSAFGAGFCTTVIASPVDVVKTRYMNSALG 236
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 10/163 (6%)
Query: 89 PLDLVKCNMQIDPV-----KYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACXXX 143
P D+VK Q +Y+S + + +E+GIRG ++G P + A+ A
Sbjct: 124 PTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNV----ARNAIVNC 179
Query: 144 XXXXXXXXXSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVR-VQTQPGFAR 202
D + + A F V P + VK R + + G
Sbjct: 180 AELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYH 239
Query: 203 GLGDGLPKFVKSEGALGLYKGIVPLWGRQIPYTMMKFASFETI 245
G ++ EG YKG +P + R + ++ F ++E +
Sbjct: 240 SAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQL 282
>pdb|2Q6U|A Chain A, Semet-Substituted Form Of Nikd
Length = 384
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 81 GLTHTAVTPLDLVKC--NMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTL 131
G H P + V+C + ++DP+ + S ++G + + G+ R +PT+
Sbjct: 258 GFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGVADRRQXDRLSGWLRDHLPTV 310
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 180 ADVALCPFEAVKVRVQTQPGFARGLGDGLPKFVKSEGALGLYKGIVPLWGRQIPYTM--- 236
A V PF+ + T RG GL + K K + P GR+IPYT
Sbjct: 247 AKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKG------VKAVDPKTGREIPYTFEDR 300
Query: 237 MKFASFETIVEMIYKHAV 254
+ FA F ++ + HA+
Sbjct: 301 INFAVFPSLQGGPHNHAI 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,144,984
Number of Sequences: 62578
Number of extensions: 345300
Number of successful extensions: 525
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 7
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)