Query 019541
Match_columns 339
No_of_seqs 346 out of 2116
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 03:23:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 6.3E-53 2.1E-57 386.2 24.5 251 68-328 6-279 (297)
2 2lck_A Mitochondrial uncouplin 100.0 2.2E-52 7.5E-57 383.7 19.5 243 73-328 5-267 (303)
3 2lck_A Mitochondrial uncouplin 100.0 4.1E-37 1.4E-41 282.0 13.8 179 70-252 105-289 (303)
4 1okc_A ADP, ATP carrier protei 100.0 1E-35 3.4E-40 272.0 18.7 174 68-248 111-296 (297)
5 2a3d_A Protein (de novo three- 25.3 82 0.0028 20.0 3.4 38 89-126 10-47 (73)
6 3d7c_A General control of amin 17.7 71 0.0024 23.2 2.4 31 281-311 41-73 (112)
7 2d9e_A Peregrin; four-helix bu 15.8 84 0.0029 23.3 2.4 30 281-310 41-72 (121)
8 2ouo_A HUNK1 protein, bromodom 15.7 84 0.0029 23.6 2.4 30 282-311 62-93 (130)
9 3tgu_G UQCRQ, mitochondrial ub 15.7 1E+02 0.0034 21.3 2.5 37 221-257 38-74 (81)
10 1e6i_A Transcriptional activat 14.8 93 0.0032 23.0 2.4 31 281-311 47-79 (121)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=6.3e-53 Score=386.23 Aligned_cols=251 Identities=21% Similarity=0.239 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHhhhhhcccchHHHHHHHHhcCCC--------CCCChHHHHHHHHHhhchhhhhcchhHHHHhHhHhhH
Q 019541 68 FYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPV--------KYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGA 139 (339)
Q Consensus 68 ~~~~~~~aG~~a~~~~~~~~~Pld~iKtr~Q~~~~--------~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 139 (339)
.+...+++|++|++++.++++|||+||+|+|++.. .|+++++++++|+++||++|||||+.+++++.+++.+
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 34566788888889999999999999999999742 5889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCcchhhhhHHHHHHHHHHHHHHHhhhhChHHHHHHHHhcCC------CCCCCHhhHHHHHHH
Q 019541 140 CKFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQP------GFARGLGDGLPKFVK 213 (339)
Q Consensus 140 ~~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~~~Pldvvktr~q~~~------~~~~~~~~~~~~i~~ 213 (339)
++|.+||.+|+.+....+.+..........+++|++||+++.++++|+|+||+|+|++. ..|+++++++++|++
T Consensus 86 ~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~ 165 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK 165 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHH
Confidence 99999999999654322222222234566789999999999999999999999999874 368999999999999
Q ss_pred hhCccccccChHHHHHhHHHhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhccHHHHHH
Q 019541 214 SEGALGLYKGIVPLWGRQIPYTMMKFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVS 293 (339)
Q Consensus 214 ~~G~~glyrG~~~~l~r~~~~~~~~f~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~Dvvkt 293 (339)
+||++|||||+.++++|.+|+++++|.+||.+|+.+.+.. ..+....+++|.++|++++++++|+||||+
T Consensus 166 ~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~----------~~~~~~~~~~g~~ag~~a~~~t~P~dvvkt 235 (297)
T 1okc_A 166 SDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK----------NVHIIVSWMIAQTVTAVAGLVSYPFDTVRR 235 (297)
T ss_dssp HHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG----------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC----------CccHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 9999999999999999999999999999999998653221 124677899999999999999999999999
Q ss_pred HHhcCC--------CCChHHHHHHHHHhhcccccccC-CCCccc
Q 019541 294 FLNNAK--------GATVGDVSCEEARFVGSIYPWAS-SPYCHD 328 (339)
Q Consensus 294 rlq~~~--------~~~~~~~~~~i~~~eG~~gfy~G-~p~~~~ 328 (339)
|||++. +.++.+|+++|+++||++||||| .|...+
T Consensus 236 r~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r 279 (297)
T 1okc_A 236 RMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR 279 (297)
T ss_dssp HHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHH
T ss_pred HHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHh
Confidence 999873 57999999999999999999999 887665
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.2e-52 Score=383.68 Aligned_cols=243 Identities=19% Similarity=0.293 Sum_probs=216.7
Q ss_pred HHHHHHHhhhhhcccchHHHHHHHHhcCCC-----------CCCChHHHHHHHHHhhchhhhhcchhHHHHhHhHhhHHH
Q 019541 73 TVGGILSCGLTHTAVTPLDLVKCNMQIDPV-----------KYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACK 141 (339)
Q Consensus 73 ~~aG~~a~~~~~~~~~Pld~iKtr~Q~~~~-----------~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~ 141 (339)
+++|++|++++.+++||||+||+|+|++.. .|+++++++++|+++||++|||||+.+++++.+++.+++
T Consensus 5 ~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 84 (303)
T 2lck_A 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVR 84 (303)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHH
Confidence 577888888888999999999999999753 588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCcchhhhhHHHHHHHHHHHHHHHhhhhChHHHHHHHHhcCCC-----CCCCHhhHHHHHHHhhC
Q 019541 142 FGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQPG-----FARGLGDGLPKFVKSEG 216 (339)
Q Consensus 142 f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~~~Pldvvktr~q~~~~-----~~~~~~~~~~~i~~~~G 216 (339)
|.+||.+|+.+.+..+ .......+++|+++|+++.++++|+|+||+|+|++.. .|+++++++++|+++||
T Consensus 85 f~~ye~~k~~~~~~~~-----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG 159 (303)
T 2lck_A 85 IGLYDSVKQFYTKGSE-----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEG 159 (303)
T ss_dssp TTHHHHHHHHHSCCCS-----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCc-----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcC
Confidence 9999999998865311 2345678899999999999999999999999998753 68999999999999999
Q ss_pred ccccccChHHHHHhHHHhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhccHHHHHHHHh
Q 019541 217 ALGLYKGIVPLWGRQIPYTMMKFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLN 296 (339)
Q Consensus 217 ~~glyrG~~~~l~r~~~~~~~~f~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~Dvvktrlq 296 (339)
++|||||+.++++|.+|+.+++|.+||.+|+.+.+... ...+....+++|++||++++++++|+||||+|||
T Consensus 160 ~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~--------~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq 231 (303)
T 2lck_A 160 IRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL--------MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYM 231 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS--------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999998754311 1224677899999999999999999999999999
Q ss_pred cCC---CCChHHHHHHHHHhhcccccccC-CCCccc
Q 019541 297 NAK---GATVGDVSCEEARFVGSIYPWAS-SPYCHD 328 (339)
Q Consensus 297 ~~~---~~~~~~~~~~i~~~eG~~gfy~G-~p~~~~ 328 (339)
++. +.++++|+++|+++||++||||| .|...+
T Consensus 232 ~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r 267 (303)
T 2lck_A 232 NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLR 267 (303)
T ss_dssp TCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHH
T ss_pred hccccccCCHHHHHHHHHHHcChHHhhccHHHHHHH
Confidence 874 78999999999999999999999 666543
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.1e-37 Score=282.03 Aligned_cols=179 Identities=20% Similarity=0.359 Sum_probs=159.6
Q ss_pred HHHHHHHHHHhhhhhcccchHHHHHHHHhcCCC-----CCCChHHHHHHHHHhhchhhhhcchhHHHHhHhHhhHHHHHH
Q 019541 70 AACTVGGILSCGLTHTAVTPLDLVKCNMQIDPV-----KYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACKFGF 144 (339)
Q Consensus 70 ~~~~~aG~~a~~~~~~~~~Pld~iKtr~Q~~~~-----~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ 144 (339)
...+++|++|++++.++++|+|+||+|+|++.. .|++.++++++|+++||++|||||+.+++++.+++.+++|.+
T Consensus 105 ~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ 184 (303)
T 2lck_A 105 GSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVT 184 (303)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHH
Confidence 445677888888888999999999999999863 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhhhhHHHHHHHHHHHHHHHhhhhChHHHHHHHHhcCC-CCCCCHhhHHHHHHHhhCccccccC
Q 019541 145 YEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQP-GFARGLGDGLPKFVKSEGALGLYKG 223 (339)
Q Consensus 145 y~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~~~Pldvvktr~q~~~-~~~~~~~~~~~~i~~~~G~~glyrG 223 (339)
||.+|+.+.+.... .......+++|++||++++++++|+|+||+|+|++. ..|+++++|+++|+++||++|||||
T Consensus 185 ye~~k~~l~~~~~~----~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG 260 (303)
T 2lck_A 185 YDLIKDTLLKANLM----TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKG 260 (303)
T ss_dssp HHHHHHTTTTTTSC----CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSC
T ss_pred HHHHHHHHHhccCC----CCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhcc
Confidence 99999988654321 123456788999999999999999999999999985 4699999999999999999999999
Q ss_pred hHHHHHhHHHhHHHHHHHHHHHHHHHHhc
Q 019541 224 IVPLWGRQIPYTMMKFASFETIVEMIYKH 252 (339)
Q Consensus 224 ~~~~l~r~~~~~~~~f~~ye~~~~~~~~~ 252 (339)
+.++++|.+|.++++|.+||.+|+.+.+.
T Consensus 261 ~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 261 FMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999876433
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1e-35 Score=272.04 Aligned_cols=174 Identities=21% Similarity=0.347 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHhhhhhcccchHHHHHHHHhcCC------CCCCChHHHHHHHHHhhchhhhhcchhHHHHhHhHhhHHH
Q 019541 68 FYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDP------VKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACK 141 (339)
Q Consensus 68 ~~~~~~~aG~~a~~~~~~~~~Pld~iKtr~Q~~~------~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~ 141 (339)
.+...+++|++|++++.++++|+|+||+|+|++. ..|+++++++++|+++||++|||||+.+++++.+++.+++
T Consensus 111 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~ 190 (297)
T 1okc_A 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAY 190 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHH
Confidence 4456678888888888999999999999999974 3588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCcchhhhhHHHHHHHHHHHHHHHhhhhChHHHHHHHHhcCCC------CCCCHhhHHHHHHHhh
Q 019541 142 FGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQPG------FARGLGDGLPKFVKSE 215 (339)
Q Consensus 142 f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~~~Pldvvktr~q~~~~------~~~~~~~~~~~i~~~~ 215 (339)
|.+||.+|+.+.+.. .......+++|+++|++++++++|+|+||+|+|++.. .|+++++|+++|+++|
T Consensus 191 f~~ye~~k~~~~~~~------~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~e 264 (297)
T 1okc_A 191 FGVYDTAKGMLPDPK------NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDE 264 (297)
T ss_dssp HHHHHHHHHSSCGGG------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC------CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHc
Confidence 999999999775422 1234567788999999999999999999999998742 5899999999999999
Q ss_pred CccccccChHHHHHhHHHhHHHHHHHHHHHHHH
Q 019541 216 GALGLYKGIVPLWGRQIPYTMMKFASFETIVEM 248 (339)
Q Consensus 216 G~~glyrG~~~~l~r~~~~~~~~f~~ye~~~~~ 248 (339)
|++|||||+.|+++|. +.++++|.+||.+|+.
T Consensus 265 G~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 265 GPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp CGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred CcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 9999999999999996 5689999999999875
No 5
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=25.33 E-value=82 Score=19.98 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=19.9
Q ss_pred hHHHHHHHHhcCCCCCCChHHHHHHHHHhhchhhhhcc
Q 019541 89 PLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRG 126 (339)
Q Consensus 89 Pld~iKtr~Q~~~~~~~~~~~~~~~i~~~eG~~glyrG 126 (339)
-|..||||+|.-+..-..+...-++|..-|.-..-|+|
T Consensus 10 rlaaiktrlqalggseaelaafekeiaafeselqaykg 47 (73)
T 2a3d_A 10 RLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKG 47 (73)
T ss_dssp HHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46789999998654333333333444433333333444
No 6
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=17.74 E-value=71 Score=23.25 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=24.0
Q ss_pred HHHhhccHH--HHHHHHhcCCCCChHHHHHHHH
Q 019541 281 CAIVSHPAD--NLVSFLNNAKGATVGDVSCEEA 311 (339)
Q Consensus 281 a~~~t~P~D--vvktrlq~~~~~~~~~~~~~i~ 311 (339)
..+|.+|+| +|+.|+....|.++.+...++-
T Consensus 41 ~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~ 73 (112)
T 3d7c_A 41 YEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQ 73 (112)
T ss_dssp HHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 347789986 8999999999988776666643
No 7
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=15.84 E-value=84 Score=23.31 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=23.4
Q ss_pred HHHhhccHH--HHHHHHhcCCCCChHHHHHHH
Q 019541 281 CAIVSHPAD--NLVSFLNNAKGATVGDVSCEE 310 (339)
Q Consensus 281 a~~~t~P~D--vvktrlq~~~~~~~~~~~~~i 310 (339)
..+|.+|+| +|+.|+....|.++.+...++
T Consensus 41 ~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~ 72 (121)
T 2d9e_A 41 LDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDF 72 (121)
T ss_dssp HHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHH
Confidence 357889976 899999998888877666654
No 8
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=15.73 E-value=84 Score=23.63 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=24.0
Q ss_pred HHhhccHH--HHHHHHhcCCCCChHHHHHHHH
Q 019541 282 AIVSHPAD--NLVSFLNNAKGATVGDVSCEEA 311 (339)
Q Consensus 282 ~~~t~P~D--vvktrlq~~~~~~~~~~~~~i~ 311 (339)
.+|.+|+| +|+.|+....|.++.+...++-
T Consensus 62 ~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~ 93 (130)
T 2ouo_A 62 DIIKHPMDMSTIKSKLEAREYRDAQEFGADVR 93 (130)
T ss_dssp HHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 47789976 8999999999998777766643
No 9
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=15.67 E-value=1e+02 Score=21.34 Aligned_cols=37 Identities=5% Similarity=0.015 Sum_probs=26.9
Q ss_pred ccChHHHHHhHHHhHHHHHHHHHHHHHHHHhccCCCC
Q 019541 221 YKGIVPLWGRQIPYTMMKFASFETIVEMIYKHAVPTP 257 (339)
Q Consensus 221 yrG~~~~l~r~~~~~~~~f~~ye~~~~~~~~~~~~~~ 257 (339)
+|-+...++..+|...+.+.+|+..++.......+.+
T Consensus 38 ~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKnp 74 (81)
T 3tgu_G 38 WRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNP 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCG
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3334566777888889999999999988776644433
No 10
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=14.80 E-value=93 Score=23.02 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=24.0
Q ss_pred HHHhhccHH--HHHHHHhcCCCCChHHHHHHHH
Q 019541 281 CAIVSHPAD--NLVSFLNNAKGATVGDVSCEEA 311 (339)
Q Consensus 281 a~~~t~P~D--vvktrlq~~~~~~~~~~~~~i~ 311 (339)
..+|.+|.| +|+.|+....|.++.+...++-
T Consensus 47 ~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~ 79 (121)
T 1e6i_A 47 YDFIKEPMDLSTMEIKLESNKYQKMEDFIYDAR 79 (121)
T ss_dssp HHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 447789976 8999999999988777666643
Done!