Your job contains 1 sequence.
>019542
MSSSTASVLKPLSSMADSTSLLSPPSIFARNPYFSIHPRPRPIKLHLSDSSLSSKGFSFK
LKKTTHFSSFTTFVAQTSDWADQEEDKDNTTITLEQEQEENGEEEPNWENQGADETEGNL
SDWGEPEGEDTVVEAGERQEESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVDSEKLAMLF
EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG
TQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFV
TMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF
The BLAST search returned 10 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 019542
(339 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 792 2.8e-82 2
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 738 5.2e-77 2
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 267 1.4e-48 2
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 396 8.0e-37 1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 387 7.2e-36 1
TAIR|locus:2083810 - symbol:PSRP2 "plastid-specific... 312 6.4e-28 1
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 287 2.9e-25 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 281 3.9e-24 1
TAIR|locus:2062379 - symbol:AT2G35410 species:3702 "Arabi... 270 1.8e-23 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 276 1.9e-23 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 262 1.7e-22 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 262 1.7e-22 1
TAIR|locus:2200975 - symbol:AT1G01080 species:3702 "Arabi... 250 2.4e-21 1
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 244 1.2e-20 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 243 2.0e-20 1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 239 6.1e-20 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 236 7.2e-20 1
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 241 8.2e-20 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 244 8.8e-20 1
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 235 9.2e-20 1
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 235 9.2e-20 1
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 235 9.2e-20 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 243 1.1e-19 1
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 234 1.2e-19 1
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 234 1.2e-19 1
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 234 1.2e-19 1
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 234 1.2e-19 1
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 234 1.2e-19 1
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 234 1.2e-19 1
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 234 1.2e-19 1
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 234 1.2e-19 1
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 234 1.2e-19 1
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 234 1.2e-19 1
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 234 1.2e-19 1
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 234 1.2e-19 1
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 234 1.2e-19 1
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 234 1.2e-19 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 243 1.2e-19 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 236 1.3e-19 1
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 234 1.4e-19 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 242 1.5e-19 1
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 235 1.7e-19 1
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 234 1.9e-19 1
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 234 1.9e-19 1
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 234 1.9e-19 1
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 234 2.1e-19 1
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 234 2.1e-19 1
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 234 2.2e-19 1
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 234 2.2e-19 1
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 234 2.2e-19 1
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 234 2.3e-19 1
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 231 2.5e-19 1
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 231 2.5e-19 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 231 2.5e-19 1
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein... 231 2.5e-19 1
ZFIN|ZDB-GENE-030131-618 - symbol:hnrnpa0l "heterogeneous... 231 2.5e-19 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 239 3.2e-19 1
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 229 4.0e-19 1
ZFIN|ZDB-GENE-030131-6154 - symbol:hnrnpa0b "heterogeneou... 229 4.0e-19 1
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 233 4.7e-19 1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 229 4.8e-19 1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 220 4.8e-19 2
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 228 5.1e-19 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 227 6.5e-19 1
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 229 6.6e-19 1
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 229 6.6e-19 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 236 6.8e-19 1
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 231 6.9e-19 1
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 230 7.1e-19 1
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 229 7.2e-19 1
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 229 7.4e-19 1
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 229 7.4e-19 1
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 229 8.3e-19 1
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 229 8.3e-19 1
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 229 8.5e-19 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 235 8.7e-19 1
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 229 8.7e-19 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 235 8.8e-19 1
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp... 229 8.9e-19 1
MGI|MGI:107427 - symbol:Elavl4 "ELAV (embryonic lethal, a... 229 8.9e-19 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 232 8.9e-19 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 226 9.7e-19 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 234 1.0e-18 1
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 232 1.0e-18 1
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 225 1.1e-18 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 225 1.1e-18 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 228 1.1e-18 1
UNIPROTKB|Q2HJ60 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 225 1.1e-18 1
UNIPROTKB|Q5RBU8 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 226 1.1e-18 1
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s... 218 1.2e-18 2
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 226 1.3e-18 1
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 226 1.3e-18 1
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 226 1.3e-18 1
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 229 1.3e-18 1
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 233 1.3e-18 1
UNIPROTKB|F1M2S4 - symbol:F1M2S4 "Uncharacterized protein... 224 1.4e-18 1
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 232 1.4e-18 1
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 226 1.4e-18 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 233 1.5e-18 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 232 1.5e-18 1
WARNING: Descriptions of 1362 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 792 (283.9 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
Identities = 165/266 (62%), Positives = 194/266 (72%)
Query: 74 VAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVV 133
VAQTSDWA EE + + D +EG++S+ E EG+ +
Sbjct: 78 VAQTSDWA--EEGGEGSVAVEETENSLESQDVSEGDESEGDASEGDVSEGDESEGDVSEG 135
Query: 134 EAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIY 193
ER +AKLFVGNL YDV+S+ LAMLFE+AGTVEIAEVIY
Sbjct: 136 AVSER------------AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIY 183
Query: 194 NRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 253
NRETD+SRGFGFVTMS+V+EAE AVE F+RYD++GRLLTVNKAAPRG++PERAPRV+EP
Sbjct: 184 NRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPA 243
Query: 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313
FR+YVGNLPW+VDN RLEQ+FSEHGKVV ARVVYDRETGRSRGFGFVTMS ELN+AI+
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 314 ALDGQNLDGRAIRVNVAEDRQRRSSF 339
ALDGQNL+GRAIRVNVAE+R R +
Sbjct: 304 ALDGQNLEGRAIRVNVAEERPPRRGY 329
Score = 52 (23.4 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 2 SSSTASVLKPLSSMADSTS--LLSPPSI 27
SS S LKPL+ MADS+S + S PSI
Sbjct: 3 SSIVTSSLKPLA-MADSSSSTIFSHPSI 29
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 738 (264.8 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 147/217 (67%), Positives = 175/217 (80%)
Query: 121 SDWGEPE-GEDTVVEAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAML 179
S+W E E GED + G +AKLFVGNLPYDVDS+ LAML
Sbjct: 74 SNWAEEEEGEDGSI-GGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAML 132
Query: 180 FEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 239
FE+AGTVEI+EVIYNR+TD+SRGFGFVTMSTVEEAEKAVE F+ ++++GR LTVN+AAPR
Sbjct: 133 FEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPR 192
Query: 240 GTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 299
G++PER PRV++ FRIYVGNLPW+VD+ RLE++FSEHGKVV+ARVV DRETGRSRGFGF
Sbjct: 193 GSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGF 252
Query: 300 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
V MS+E E+N AIAALDGQNL+GRAI+VNVAE+R RR
Sbjct: 253 VQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
Score = 56 (24.8 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 74 VAQTSDWADQEEDKDNT 90
V+QTS+WA++EE +D +
Sbjct: 70 VSQTSNWAEEEEGEDGS 86
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 267 (99.0 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 52/87 (59%), Positives = 65/87 (74%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G R+YVGNL W VD+ LE +FSE GKVV ARV+YDR++GRS+GFGFVT S E+ +AI
Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRSSF 339
+LDG +LDGR IRV+ AE R R +
Sbjct: 263 KSLDGADLDGRQIRVSEAEARPPRRQY 289
Score = 257 (95.5 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 53/93 (56%), Positives = 66/93 (70%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
D KLFVGNLP++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVTMS+V E E A
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPE---RAPR 248
+ F+ Y++DGR L VN P + + R PR
Sbjct: 150 QQFNGYELDGRPLRVNAGPPPPKREDGFSRGPR 182
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 42/87 (48%), Positives = 56/87 (64%)
Query: 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 309
F +++VGNLP+ VD+A+L Q+F G V V+YD+ TGRSRGFGFVTMSS +E+
Sbjct: 87 FSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVE 146
Query: 310 DAIAALDGQNLDGRAIRVNVAEDRQRR 336
A +G LDGR +RVN +R
Sbjct: 147 AAAQQFNGYELDGRPLRVNAGPPPPKR 173
Score = 166 (63.5 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
+++VGNL + VD L LF + G V A VIY+R++ RS+GFGFVT + +E + A++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 221 FHRYDIDGRLLTVNKAAPR 239
D+DGR + V++A R
Sbjct: 265 LDGADLDGRQIRVSEAEAR 283
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 86/235 (36%), Positives = 138/235 (58%)
Query: 113 ADETEGNLSD---WGEPEGEDTVVEAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPY 169
A ETE + +D E E+ V E G+ + +L+VGNLPY
Sbjct: 69 AAETEASSADDEIQASVEEEEEVEEEGDE---GEEEVEEEKQTTQASGEEGRLYVGNLPY 125
Query: 170 DVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGR 229
+ S +L+ +F +AGTV +++Y++ TDRSRGFGFVTM ++EEA++A++MF+ I GR
Sbjct: 126 TITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGR 185
Query: 230 LLTVN-KAAPRGTQPE--RAP-----RVF-EPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ VN PRG + E R R + + ++Y GNL W + + L+ F + V
Sbjct: 186 TVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGV 245
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 335
+ A+V+Y+R TGRSRGFGF++ S + A+A ++G ++GRA+R+N+A +R++
Sbjct: 246 LGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREK 300
Score = 145 (56.1 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 33/93 (35%), Positives = 53/93 (56%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K++ GNL +++ S+ L F V A+VIY R T RSRGFGF++ + E + A+
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 253
+ +++GR L +N A+ R +P +P E G
Sbjct: 280 MNGVEVEGRALRLNLASER-EKPTVSPPSVEEG 311
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 81/176 (46%), Positives = 112/176 (63%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
+ KL+ GNLPY+VDS LA + + E+ EV+YNR+T +SRGF FVTMS VE+ +
Sbjct: 84 NTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIII 143
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
+ + GR L VN A +P + P E +++VGNL W V + L F E G
Sbjct: 144 DNLDGTEYLGRALKVNFADK--PKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECG 201
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
VV ARVV+D +TGRSRG+GFV SS+ E+ A+ +LDG L+GRAIRVN+A+ ++
Sbjct: 202 DVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 72/177 (40%), Positives = 106/177 (59%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
++++GN+P V +E+L L E+ G VE +V+Y++ + RSR FGF TM +VE+A VE
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 221 FHRYDIDGRLLTVN-KAAPRGTQPERAPRVFEPG------FRIYVGNLPWEVDNARLEQV 273
+ ++GR + VN P + P+ + E +++YVGNL V LE +
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENL 196
Query: 274 FSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
FSE GKVV+A+V T +S GFGFVT SSE ++ AI AL+ L+G+ IRVN A
Sbjct: 197 FSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 38/95 (40%), Positives = 57/95 (60%)
Query: 241 TQPERAPRVFEPGF----RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRG 296
T+ E P +P R+Y+GN+P V N +L ++ EHG V +V+YD+ +GRSR
Sbjct: 59 TETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118
Query: 297 FGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
FGF TM S + N + L+G ++GR I+VN+ E
Sbjct: 119 FGFATMKSVEDANAVVEKLNGNTVEGREIKVNITE 153
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 76/265 (28%), Positives = 124/265 (46%)
Query: 75 AQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVE 134
+ +SD + EE+++ T E+E S+ + + ED E
Sbjct: 90 SSSSDSSSDEEEEEEKEETKKEESKESSSSDSSSSSSSDSESEKEESNDKKRKSEDAEEE 149
Query: 135 AGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYN 194
E A +FVG L + +D E L FE G V A VIY
Sbjct: 150 EDEESSNKKQKNEETEE-------PATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYE 202
Query: 195 RETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT--VNKAAPRGTQPERAPRV--- 249
R TDRSRG+G+V AEKA++ +IDGR + ++ + P G +RA +
Sbjct: 203 RGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNN-DRAKKFGDT 261
Query: 250 -FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETEL 308
EP +++GNL + D + ++F++HG+VV+ R+ ET + +GFG+V S+ +
Sbjct: 262 PSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDA 321
Query: 309 NDAIAALDGQNLDGRAIRVNVAEDR 333
A+ AL G+ +D R +R++ + R
Sbjct: 322 KKALDALQGEYIDNRPVRLDFSSPR 346
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 281 (104.0 bits), Expect = 3.9e-24, P = 3.9e-24
Identities = 76/233 (32%), Positives = 119/233 (51%)
Query: 113 ADETEGNLSDWGEPEGEDTVVEAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVD 172
+D + + SD E + T + +R+ + LFVGNL ++VD
Sbjct: 192 SDSSGSDSSDDEEEKPAKTEAPSKKRKAEEEEEAPAKKTKTEESDKPSTLFVGNLSWNVD 251
Query: 173 SEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232
LA F+ GTV A VI +RE+ RS+GFG+V +T EEAEKA IDGR +
Sbjct: 252 DAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIK 311
Query: 233 VNKAAPRGTQPE-----RAPR----VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNA 283
V+ + + T RA + V ++VGNLP++ D + FSE +V +
Sbjct: 312 VDFSTGKATNSNDAAGARAKKYGDTVSPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSL 371
Query: 284 RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
R+ ++E+GR +GFG+VT +S + A L+GQ+++GR R++ + R R
Sbjct: 372 RLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRNCRLDYSTPRPPR 424
Score = 169 (64.5 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 34/83 (40%), Positives = 51/83 (61%)
Query: 256 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315
++VGNL W VD+A L + F G V +ARV+ DRE+GRS+GFG+V ++ E A
Sbjct: 241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEK 300
Query: 316 DGQNLDGRAIRVNVAEDRQRRSS 338
G +DGR I+V+ + + S+
Sbjct: 301 QGAFIDGREIKVDFSTGKATNSN 323
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 59/172 (34%), Positives = 100/172 (58%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFV NLP+ + ++ LF + GTV E+I ++ ++RGF FVTM++ EEA+ A++
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAIDK 154
Query: 221 FHRYDIDGRLLTVN------KAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVF 274
F + + GR+++V+ K P+ +P + ++YV NL W+ + L ++F
Sbjct: 155 FDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELF 214
Query: 275 SEHG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 325
+ V+ARVV+ GRS G+GFV+ ++ E +AI L+G+ + GR I
Sbjct: 215 TAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPI 266
Score = 129 (50.5 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314
+++V NLPW + + ++F + G V N ++ ++ G++RGF FVTM+S E AI
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAIDK 154
Query: 315 LDGQNLDGRAIRVNVA 330
D + GR I V+ A
Sbjct: 155 FDTFQVSGRIISVSFA 170
Score = 111 (44.1 bits), Expect = 0.00073, P = 0.00073
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEI-AEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
KL+V NL + S L LF A + A V++ RS G+GFV+ +T EEAE A+
Sbjct: 195 KLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAIT 254
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPE 244
+ +I GR +T+ + ++ E
Sbjct: 255 KLNGKEIMGRPITLKFSLRSASESE 279
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 276 (102.2 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 78/235 (33%), Positives = 113/235 (48%)
Query: 113 ADETEGNLSDWGEPEGEDTVVEAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVD 172
+DE G S E E D ++ +R+ A LFVGNL ++V
Sbjct: 233 SDEESG--SSGSESEDSDKPADSKKRKAEEEPAAASKKSKTEEGAS-ANLFVGNLSWNVT 289
Query: 173 SEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232
E L FE+ G + A ++ R+T RSRGFG+V + +A KA E ++IDGR +
Sbjct: 290 EEWLHQEFEQFGELS-ARIMTERDTGRSRGFGYVEFTNAADAAKAYEAMKEHEIDGRKIN 348
Query: 233 VNKAAPR------GTQPERAP---RVF----EP-GFRIYVGNLPWEVDNARLEQVFSEHG 278
++ A R G ERA R F P ++VGNLP+ + + +VF G
Sbjct: 349 LDYATGRPANKDQGGFKERAQNRARSFGDQTSPESDTLFVGNLPFSANEDSVHEVFGPQG 408
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
V+ R+ D E+GR +GFG+V SS E A L G +DGR IR++ + R
Sbjct: 409 NVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNELQGAEIDGRPIRLDFSTPR 463
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 262 (97.3 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 72/271 (26%), Positives = 126/271 (46%)
Query: 76 QTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEA 135
++S +D+EE K+ + + +D + S+ EP + E+
Sbjct: 89 ESSSGSDEEEKKEEKSSSSDSEDSSSSDSSSSESDSDSDSDSDSDSE-EEPSKKRKAEES 147
Query: 136 GERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNR 195
E + A LFVG L +++D L FE G V A VI R
Sbjct: 148 KEEESAPVKKSKPAASTEE----PATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMER 203
Query: 196 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA--PRGTQP--ERAPRVFE 251
T +SRG+G+V + AEKA+E +IDGR + ++ + P ++ +RA + +
Sbjct: 204 ATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGD 263
Query: 252 ----PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 307
P +++GNL + + L VF E+G V++ RV +T + +GFG+V SS E
Sbjct: 264 SQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDE 323
Query: 308 LNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
A+ A++G+ ++GR R++ + R ++
Sbjct: 324 AKAALEAMNGEYIEGRPCRLDFSTPRDNTNN 354
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 262 (97.3 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 72/271 (26%), Positives = 126/271 (46%)
Query: 76 QTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEA 135
++S +D+EE K+ + + +D + S+ EP + E+
Sbjct: 89 ESSSGSDEEEKKEEKSSSSDSEDSSSSDSSSSESDSDSDSDSDSDSE-EEPSKKRKAEES 147
Query: 136 GERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNR 195
E + A LFVG L +++D L FE G V A VI R
Sbjct: 148 KEEESAPVKKSKPAASTEE----PATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMER 203
Query: 196 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA--PRGTQP--ERAPRVFE 251
T +SRG+G+V + AEKA+E +IDGR + ++ + P ++ +RA + +
Sbjct: 204 ATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGD 263
Query: 252 ----PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 307
P +++GNL + + L VF E+G V++ RV +T + +GFG+V SS E
Sbjct: 264 SQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDE 323
Query: 308 LNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
A+ A++G+ ++GR R++ + R ++
Sbjct: 324 AKAALEAMNGEYIEGRPCRLDFSTPRDNTNN 354
>TAIR|locus:2200975 [details] [associations]
symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
Length = 294
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 65/189 (34%), Positives = 104/189 (55%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIY-NRETDRSRGFGFVTMSTVEEAEKAVE 219
+L+V N+P D +L +F+ GTV EV+ N +T SRG G+VTM ++ A+ A+
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIA 168
Query: 220 MFHRYDIDGRLLTVNKAAPR--GTQ--PE---RAPR---VFEPGFRIYVGNLPWEVDNAR 269
++ GR + V + GT+ PE P+ ++E ++YVGNLPW
Sbjct: 169 SLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDG 228
Query: 270 LEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
L FS+ G +V+ RV++DR+TGR+R F F++ +S E DA + +G +GR R+ V
Sbjct: 229 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALSFNGTQYEGR--RIIV 285
Query: 330 AEDRQRRSS 338
E ++ S
Sbjct: 286 REGIEKSES 294
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 244 (91.0 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 62/183 (33%), Positives = 99/183 (54%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG + ++ +E A F K G V + ++ +R T RGFGFVT + AEK +E
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
H ID R + + + PRG + V + +I+VG LP ++ L+ F +G +
Sbjct: 127 DHV--IDDRKVDLKRTLPRGDKDTDIKAVSKTR-KIFVGGLPPLLEEDELKNYFCVYGDI 183
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ--NLDGRAIRVNVAEDRQ--RR 336
+ +++YD TGRSRGFGFVT +E ++ + DG+ L + + + AE ++ R
Sbjct: 184 IEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS--DGKVHELGDKQVEIKRAEPKRTGRD 241
Query: 337 SSF 339
+SF
Sbjct: 242 NSF 244
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 25/90 (27%), Positives = 49/90 (54%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG LP ++ ++L F G + +++Y+ T RSRGFGFVT T + ++
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVF 250
+++ + + + +A P+ T + + R +
Sbjct: 218 GKVHELGDKQVEIKRAEPKRTGRDNSFRSY 247
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 243 (90.6 bits), Expect = 2.0e-20, P = 2.0e-20
Identities = 63/184 (34%), Positives = 98/184 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV N D+D EKL LF + G E +VI + T +S+GFGFV T E A+KAV
Sbjct: 201 VFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLEL 259
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLE 271
H IDG++L V +A + + R FE PG IY+ NL +++ +L+
Sbjct: 260 HGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLK 319
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + A+V+ E G+ +GFG V SS E + A+ ++G+ + + + V + +
Sbjct: 320 EEFSLFGSISRAKVMM--EVGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQ 377
Query: 332 DRQR 335
R R
Sbjct: 378 ARHR 381
Score = 184 (69.8 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 45/176 (25%), Positives = 90/176 (51%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D+ L LF G + +V+ + + S+G+ +V ++ A +A+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHM 165
Query: 222 HRYDIDGRLLTVNKAA-PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ ++ R + V + P E R ++V N ++D+ +L+++FSE+G
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPT 225
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
+ +V+ D TG+S+GFGFV + A+ L G+++DG+ + V A+ + R
Sbjct: 226 ESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIER 280
Score = 151 (58.2 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 49/169 (28%), Positives = 82/169 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV + L F AG + + + T G+G+V +AE A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 220 MFHRYD-IDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
+ +D I+G+ + +QP+ R G I++ NL +DN L +FS G
Sbjct: 78 TMN-FDLINGKPFRL-----MWSQPDDHLRKSGVG-NIFIKNLDKSIDNRALFYLFSAFG 130
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 327
+++ +VV D + G S+G+ +V S N AI ++G L+ R + V
Sbjct: 131 NILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 239 (89.2 bits), Expect = 6.1e-20, P = 6.1e-20
Identities = 61/184 (33%), Positives = 99/184 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV N D+D +KL LF + G E +VI + + +S+GFGFV T E A+KAV
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRD-SSGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLE 271
H IDG++L V +A + + R FE PG IY+ NL +D+ +L+
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLK 319
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + A+V+ E G+ +GFG + SS E A+ ++G+ + + ++V + +
Sbjct: 320 EEFSSFGSISRAKVMV--EVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Query: 332 DRQR 335
R+R
Sbjct: 378 ARRR 381
Score = 180 (68.4 bits), Expect = 7.5e-12, P = 7.5e-12
Identities = 44/176 (25%), Positives = 91/176 (51%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D+ L LF G++ +V+ + + S+G+ +V ++ A +A+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGSILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHM 165
Query: 222 HRYDIDGRLLTVNKAA-PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ ++ R + V + P E R ++V N ++D+ +L+++FSE+G
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPT 225
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
+ +V+ D +G+S+GFGFV + A+ L G+++DG+ + V A+ + R
Sbjct: 226 ESVKVIRD-SSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
Score = 152 (58.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 49/170 (28%), Positives = 84/170 (49%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV + L F AG + + + T G+G+V +AE A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 220 MFHRYD-IDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D I+G+ + +QP+ R+ + G I++ NL +DN L +FS
Sbjct: 78 TMN-FDLINGKPFRL-----MWSQPD--DRLRKSGIGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 327
G +++ +VV D + G S+G+ +V S N AI ++G L+ R + V
Sbjct: 130 GSILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 62/184 (33%), Positives = 99/184 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV N+ D+D EKL LF + G E +VI + + +S+GFGFV T E A+KAV
Sbjct: 37 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 95
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLE 271
H IDG++L V +A + + R FE PG IY+ NL +++ +L+
Sbjct: 96 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 155
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + A+V+ E G+ +GFG V SS E A+ ++G+ + + + V + +
Sbjct: 156 EEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 213
Query: 332 DRQR 335
R+R
Sbjct: 214 ARRR 217
Score = 129 (50.5 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 24/81 (29%), Positives = 50/81 (61%)
Query: 256 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315
++V N+ ++D+ +L+++F E+G + +V+ D +G+S+GFGFV + A+ L
Sbjct: 37 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 95
Query: 316 DGQNLDGRAIRVNVAEDRQRR 336
G+++DG+ + V A+ + R
Sbjct: 96 HGKSIDGKVLYVGRAQKKIER 116
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 241 (89.9 bits), Expect = 8.2e-20, P = 8.2e-20
Identities = 62/193 (32%), Positives = 96/193 (49%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G + +D D E+L F K G + A ++ +R T R+RGFGF+ + AE+ +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-- 73
Query: 221 FHRYDIDGRLLTVNKAAPRGTQP----ERAP-RVFEP-------GFR---IYVGNLPWEV 265
++ IDGR + KA PR Q +P + P G R I+VG LP +
Sbjct: 74 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSI 133
Query: 266 DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 325
A + F + G + + V+YD T R RGFGF+T SE + D + L+G+ +
Sbjct: 134 TEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESV-DMVLHKTFHELNGKMV 192
Query: 326 RVNVAEDRQRRSS 338
V A ++ S+
Sbjct: 193 EVKRAVPKELSST 205
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 244 (91.0 bits), Expect = 8.8e-20, P = 8.8e-20
Identities = 62/187 (33%), Positives = 102/187 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
++V NL DVD ++L LF + G + +V+ + ++ SRGFGFV EEA+KAV
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ ++ GRLL V +A R + R FE G +YV NL +D+ +L
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS +G + +A+V+ E G S+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 224 (83.9 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 58/179 (32%), Positives = 94/179 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + SRGFGFV T E A+ A+
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAISTM 158
Query: 222 HRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F IYV NL +VD RL+ +FS+ GK
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAME--FTNIYVKNLHVDVDEQRLQDLFSQFGK 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+++ +V+ D ++G SRGFGFV E A+ ++G+ + GR + V A+ R R +
Sbjct: 217 MLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQN 274
Score = 178 (67.7 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 53/178 (29%), Positives = 88/178 (49%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ ++ +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ I G+ + + + +R P + + G I++ NL +DN L FS G
Sbjct: 71 TMNFEVIKGQPIRIMWS-------QRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
+++ +VV D E G SRGFGFV + +AI+ ++G L+ R + V + R+ R
Sbjct: 124 NILSCKVVCD-EHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRRER 179
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 56/174 (32%), Positives = 89/174 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ + L FEK GT+ V+ + +T RSRGFGFVT S VEE + A+
Sbjct: 22 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 81
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + P +I+VG + + + L + F ++GK+
Sbjct: 82 -RPHKVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKI 138
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
V+ DR++G+ RGF FVT + D I ++G V A +Q
Sbjct: 139 ETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVVQKYHTINGHNCEVKKALSKQ 191
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 56/174 (32%), Positives = 89/174 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ + L FEK GT+ V+ + +T RSRGFGFVT S VEE + A+
Sbjct: 10 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 69
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + P +I+VG + + + L + F ++GK+
Sbjct: 70 -RPHKVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKI 126
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
V+ DR++G+ RGF FVT + D I ++G V A +Q
Sbjct: 127 ETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVVQKYHTINGHNCEVKKALSKQ 179
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 57/178 (32%), Positives = 89/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ ++GR++ +A R + + P + +I+VG + + + L F ++GK
Sbjct: 68 -RPHKVNGRVVEPKRAVSR--EDSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKT 124
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+V DR +G+ RGF FVT + D I ++G V A QR S
Sbjct: 125 EVIEIVTDRGSGKKRGFAFVTFDDRDSV-DKIVIQKYHTVNGHNCEVRKAPSNQRGRS 181
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 243 (90.6 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 59/187 (31%), Positives = 103/187 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
++V NL D+D + L LF + G + +V+ + +SRGFGF+ EEA+KAV+
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEEAQKAVDHM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ ++ G+LL V +A R + R FE G +YV NL +++ RL+
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLK 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+VFS +G + +A+V+ E+ S+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 EVFSTYGVITSAKVM--TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 185 (70.2 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 53/180 (29%), Positives = 89/180 (49%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
+ L+VG+L DV L +F GT+ V + T RS G+ ++ +AE+A++
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ I G+ + + + R P + G I++ NL +DN L FS G
Sbjct: 71 TMNFEMIKGQPIRIMWS-------HRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFG 123
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+++++VVY+ E G SRGFGFV + AI ++G L+ R + V + RQ+R +
Sbjct: 124 SILSSKVVYN-EHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREA 181
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00015, P = 0.00015
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00015, P = 0.00015
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00015, P = 0.00015
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 93
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 94 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 150
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 151 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 207
Score = 117 (46.2 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 25 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 84
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A +DGR + A ED QR
Sbjct: 85 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 116
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 57/178 (32%), Positives = 89/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ + L FEK GT+ V+ + +T RSRGFGFVT S VEE + A+
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 72
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + P +I+VG + + + L F ++GK+
Sbjct: 73 ARPHKVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKI 130
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
V+ DR++G+ RGF FVT + D I ++G V A +Q S
Sbjct: 131 ETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVVQKYHTINGHNCEVKKALSKQEMQS 187
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 57/178 (32%), Positives = 89/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ + L FEK GT+ V+ + +T RSRGFGFVT S VEE + A+
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 94
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + P +I+VG + + + L F ++GK+
Sbjct: 95 ARPHKVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKI 152
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
V+ DR++G+ RGF FVT + D I ++G V A +Q S
Sbjct: 153 ETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVVQKYHTINGHNCEVKKALSKQEMQS 209
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 243 (90.6 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 63/187 (33%), Positives = 101/187 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
++V NL DVD + L LF + G + +V+ + ++ SRGFGFV EEA+KAV
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ ++ GRLL V +A R + R FE G +YV NL +D+ +L
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS +G + +A+V+ E G S+GFGFV SS E A+ ++G+ L + + V +A+
Sbjct: 312 KEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 216 (81.1 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 58/179 (32%), Positives = 93/179 (51%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + SRGFGFV T E A++A+
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DDHGSRGFGFVHFETHEAAQQAITTM 158
Query: 222 HRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F IYV NL +VD L+ +FS GK
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAME--FTNIYVKNLHVDVDEQGLQDLFSRFGK 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+++ +V+ D ++G SRGFGFV E A+ ++G+ + GR + V A+ R R S
Sbjct: 217 MLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQS 274
Score = 173 (66.0 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 52/178 (29%), Positives = 86/178 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ ++ +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ I G+ + + + +R P + + G I++ NL +DN L FS G
Sbjct: 71 TMNFEVIKGQPIRIMWS-------QRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
+++ +VV D + G SRGFGFV + AI ++G L+ R + V + R+ R
Sbjct: 124 NILSCKVVCD-DHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRRER 179
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 236 (88.1 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 62/184 (33%), Positives = 99/184 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV N+ D+D EKL LF + G E +VI + + +S+GFGFV T E A+KAV
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLE 271
H IDG++L V +A + + R FE PG IY+ NL +++ +L+
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + A+V+ E G+ +GFG V SS E A+ ++G+ + + + V + +
Sbjct: 320 EEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Query: 332 DRQR 335
R+R
Sbjct: 378 ARRR 381
Score = 178 (67.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 43/176 (24%), Positives = 90/176 (51%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D+ L LF G + +V+ + + S+G+ +V ++ A +A+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHM 165
Query: 222 HRYDIDGRLLTVNKAA-PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ ++ R + V + P E R ++V N+ ++D+ +L+++F E+G
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
+ +V+ D +G+S+GFGFV + A+ L G+++DG+ + V A+ + R
Sbjct: 226 ESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
Score = 152 (58.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 49/169 (28%), Positives = 82/169 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV + L F AG + + + T G+G+V +AE A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 220 MFHRYD-IDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
+ +D I+G+ + +QP+ R G I++ NL +DN L +FS G
Sbjct: 78 TMN-FDLINGKPFRL-----MWSQPDDRLRKSGVG-NIFIKNLDKSIDNRALFYLFSAFG 130
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 327
+++ +VV D + G S+G+ +V S N AI ++G L+ R + V
Sbjct: 131 NILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 234 (87.4 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 57/178 (32%), Positives = 89/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ + L FEK GT+ V+ + +T RSRGFGFVT S VEE + A+
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 72
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + P +I+VG + + + L F ++GK+
Sbjct: 73 ARPHKVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKI 130
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
V+ DR++G+ RGF FVT + D I ++G V A +Q S
Sbjct: 131 ETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVVQKYHTINGHNCEVKKALSKQEMQS 187
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 242 (90.2 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 59/187 (31%), Positives = 102/187 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + T +S+GFGFV+ E+A KAVE
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ DI+G+++ V +A + + R FE G +Y+ NL +D+ +L
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 210 (79.0 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 45/177 (25%), Positives = 98/177 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+ FV T + A++A+E
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ ++ R + V + R + + +Y+ N ++D+ RL+++FS++GK +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTL 218
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+ +V+ D TG+S+GFGFV+ + N A+ ++G++++G+ + V A+ + R +
Sbjct: 219 SVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Score = 170 (64.9 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 54/181 (29%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG V V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G +++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+ FV ++ + AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 235 (87.8 bits), Expect = 1.7e-19, P = 1.7e-19
Identities = 56/174 (32%), Positives = 89/174 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ + L FEK GT+ V+ + +T RSRGFGFVT S VEE + A+
Sbjct: 34 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 93
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + P +I+VG + + + L + F ++GK+
Sbjct: 94 -RPHKVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKI 150
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
V+ DR++G+ RGF FVT + D I ++G V A +Q
Sbjct: 151 ETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVVQKYHTINGHNCEVKKALSKQ 203
Score = 121 (47.7 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 235 KAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRS 294
K R + P+ E ++++G L +E + L + F + G + + V+ D +T RS
Sbjct: 14 KRKGRRSSQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRS 73
Query: 295 RGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
RGFGFVT S E++ A++A +DGR + A R+
Sbjct: 74 RGFGFVTYSCVEEVDAAMSARP-HKVDGRVVEPKRAVSRE 112
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 234 (87.4 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00021, P = 0.00021
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 234 (87.4 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00022, P = 0.00022
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 234 (87.4 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00022, P = 0.00022
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 234 (87.4 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 57/178 (32%), Positives = 89/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ + L FEK GT+ V+ + +T RSRGFGFVT S VEE + A+
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 94
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + P +I+VG + + + L F ++GK+
Sbjct: 95 ARPHKVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKI 152
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
V+ DR++G+ RGF FVT + D I ++G V A +Q S
Sbjct: 153 ETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVVQKYHTINGHNCEVKKALSKQEMQS 209
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 234 (87.4 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 57/178 (32%), Positives = 89/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ + L FEK GT+ V+ + +T RSRGFGFVT S VEE + A+
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 94
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + P +I+VG + + + L F ++GK+
Sbjct: 95 ARPHKVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKI 152
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
V+ DR++G+ RGF FVT + D I ++G V A +Q S
Sbjct: 153 ETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVVQKYHTINGHNCEVKKALSKQEMQS 209
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 234 (87.4 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 57/178 (32%), Positives = 89/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ + L FEK GT+ V+ + +T RSRGFGFVT S VEE + A+
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 94
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + P +I+VG + + + L F ++GK+
Sbjct: 95 ARPHKVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKI 152
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
V+ DR++G+ RGF FVT + D I ++G V A +Q S
Sbjct: 153 ETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVVQKYHTINGHNCEVKKALSKQEMQS 209
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 234 (87.4 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 57/178 (32%), Positives = 89/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ + L FEK GT+ V+ + +T RSRGFGFVT S VEE + A+
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 94
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + P +I+VG + + + L F ++GK+
Sbjct: 95 ARPHKVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKI 152
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
V+ DR++G+ RGF FVT + D I ++G V A +Q S
Sbjct: 153 ETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVVQKYHTINGHNCEVKKALSKQEMQS 209
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 234 (87.4 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 57/178 (32%), Positives = 89/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ + L FEK GT+ V+ + +T RSRGFGFVT S VEE + A+
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 94
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + P +I+VG + + + L F ++GK+
Sbjct: 95 ARPHKVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKI 152
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
V+ DR++G+ RGF FVT + D I ++G V A +Q S
Sbjct: 153 ETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVVQKYHTINGHNCEVKKALSKQEMQS 209
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 234 (87.4 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 36 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 95
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 96 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 152
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 153 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 209
Score = 135 (52.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 38/115 (33%), Positives = 60/115 (52%)
Query: 225 DIDGRLLTVNKAAPRGTQPE-RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNA 283
D GR L + KA R + ++P+ E ++++G L +E + L F + G + +
Sbjct: 5 DAQGRSLPMPKARRRDKKARPKSPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDC 64
Query: 284 RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
V+ D T RSRGFGFVT ++ E++ A+ A +DGR + A ED QR
Sbjct: 65 VVMRDPNTKRSRGFGFVTYATVEEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 118
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALCKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 55/178 (30%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVE+ + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHNSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 113 (44.8 bits), Expect = 0.00046, P = 0.00046
Identities = 30/93 (32%), Positives = 50/93 (53%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
+++ A+ A +DGR + A ED QR
Sbjct: 66 EKVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 58/187 (31%), Positives = 103/187 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 85 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 144
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 145 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 202
Query: 332 DRQRRSS 338
++ R +
Sbjct: 203 RKEERQA 209
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 56/178 (31%), Positives = 89/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 70
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A + + P + +I+VG + + + L F ++GK
Sbjct: 71 -RPHKVDGRVVEPKRAV--SIEDSQRPGAYL-NMKIFVGAIKEDTEEHHLRDYFGQYGKT 126
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+V DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 127 EVIEIVTDRGSGKKRGFAFVTFDDRDSV-DKIVIQKYHTVNGHNCEVRKAPSKQEMAS 183
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 56/178 (31%), Positives = 91/178 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG L E L FE+ G + V+ N+ RSR FGFVT S+ EEA+ A+
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DG + + +A R + P + +I+VG L ++++ L+ FS+ G +
Sbjct: 67 -RPHIVDGNNVDLKRAVAR--EDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPI 123
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
A+V+ D++TG+ RGFGFV + A+ + ++ G + V A +Q S
Sbjct: 124 EKAQVITDKDTGKKRGFGFVYFDDNDSADKAVV-MKFHSICGHKVEVKKALTKQEMQS 180
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 239 (89.2 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 59/187 (31%), Positives = 101/187 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D ++L +F G +V+ + +T RSRGFGFV EEA+KAV
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++GR++ V +A R + R FE G +YV NL +D+ RL
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS +G + +A+V+ E G S+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 222 (83.2 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 55/177 (31%), Positives = 96/177 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + SRG+GFV T E A +A++
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158
Query: 222 HRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E +V E F +Y+ N ++D+ RL ++FS G
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVME--FTNVYIKNFGEDMDDKRLREIFSAFGN 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
++ +V+ D +TGRSRGFGFV + E A++ ++G+ ++GR I V A+ R R
Sbjct: 217 TLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272
Score = 183 (69.5 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 53/178 (29%), Positives = 88/178 (49%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ ++ +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ I GR + + + +R P + + G +++ NL +DN L FS G
Sbjct: 71 TMNFEVIKGRPIRIMWS-------QRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFG 123
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
+++ +VV D E G SRG+GFV ++ N AI ++G L+ R + V + R+ R
Sbjct: 124 NILSCKVVCD-EHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRER 179
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 56/178 (31%), Positives = 89/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 75 TP-HKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I + G V A +Q +S
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVKGHNCEVRKALPKQEMAS 188
Score = 116 (45.9 bits), Expect = 0.00021, P = 0.00021
Identities = 31/93 (33%), Positives = 48/93 (51%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E+ DA +DGR + A ED QR
Sbjct: 66 EEV-DAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 56/174 (32%), Positives = 89/174 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG L ++ L FE+ G + V+ N + RSR FGFVT ST EEA+ A+
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAA 68
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DG+ + V +A R + P +I+VG L +++ L + FS+ G +
Sbjct: 69 -RPHVVDGKNVEVKRAVAR--EDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMI 125
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
+ V+ D++TG+ RGFGFV + A+ L ++G + V A +Q
Sbjct: 126 EKSEVITDKDTGKKRGFGFVHFEDNDSADKAVV-LKFHMINGHKVEVKKALTKQ 178
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 233 (87.1 bits), Expect = 4.7e-19, P = 4.7e-19
Identities = 55/174 (31%), Positives = 91/174 (52%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG L ++ E L+ F + G + V+ N E+ RSRGFGFVT + ++
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 221 FHRYDIDGRLLTVNKAAPRGTQ-PERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGK 279
+ +DGR + PR Q P++ G+++++G LP V L F+ +GK
Sbjct: 68 -GPHTLDGRTIDPKPCNPRTLQKPKKGG-----GYKVFLGGLPSNVTETDLRTFFNRYGK 121
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
V ++YD+E +SRGFGF++ E+ + + + NL+G+ + + AE R
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSFEEESSV-EHVTNERYINLNGKQVEIKKAEPR 174
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 229 (85.7 bits), Expect = 4.8e-19, P = 4.8e-19
Identities = 56/184 (30%), Positives = 94/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 41 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 100
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 101 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 152
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 153 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPS 212
Query: 335 RRSS 338
++SS
Sbjct: 213 QKSS 216
Score = 141 (54.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 267 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 326
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 327 ASLNGYRLGDRVLQVSFKTNKAHKS 351
Score = 120 (47.3 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 330 NGYRLGDRVLQVS 342
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 220 (82.5 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 51/172 (29%), Positives = 94/172 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L + NL Y E L +FEKA +++ + + +S+G+ F+ ++ E+A++A+
Sbjct: 501 LVLSNLAYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSC 556
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
++ +I+GR + + PRG+ R+ +P ++V L E L++ F G +
Sbjct: 557 NKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEETTEETLKESFD--GSI- 609
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
AR+V DRETG S+GFGFV +SE + A A++ +DG + ++ A+ +
Sbjct: 610 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 661
Score = 136 (52.9 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 43/178 (24%), Positives = 80/178 (44%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFVGNL + + +L V+ R SR FG+V + E+ EKA+E+
Sbjct: 322 LFVGNLNFSKSASELKTGISDVFAKNDLAVVDVR-IGVSRKFGYVDFESAEDLEKALELT 380
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ G + + K + ++ +R R + NLP++V L++VF + V
Sbjct: 381 G-LKVFGNEIKLEKPKGKDSKKDRDART------LLAKNLPYKVTQDELKEVFED---AV 430
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 339
R+V + G+S+G ++ +E + + G +DGR+I + ++ + F
Sbjct: 431 EIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDF 486
Score = 121 (47.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFV L + E L F+ G++ A ++ +RET S+GFGFV ++ E+A+ A E
Sbjct: 587 LFVKGLSEETTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 643
Query: 222 HRYDIDGRLLTVNKAAPRG 240
+IDG +T++ A P+G
Sbjct: 644 EDGEIDGNKVTLDWAKPKG 662
Score = 43 (20.2 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 13/52 (25%), Positives = 18/52 (34%)
Query: 79 DWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGED 130
D D+EED+D+ + DE E D + E ED
Sbjct: 156 DEEDEEEDEDDFEPAVVKGAAAAAAPASDDEEEEEDEDEDEDEDEDDEEEED 207
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 40/80 (50%), Positives = 58/80 (72%)
Query: 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313
+R +VG L W D+ LE F+++G V++++++ DRETGRSRGFGFVT E + DAI
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 314 ALDGQNLDGRAIRVNVAEDR 333
++GQ+LDGR+I VN A+ R
Sbjct: 68 GMNGQDLDGRSITVNEAQSR 87
Score = 160 (61.4 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
+ FVG L + D L F + G V +++I +RET RSRGFGFVT + + A+E
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 221 FHRYDIDGRLLTVNKAAPRGT 241
+ D+DGR +TVN+A RG+
Sbjct: 69 MNGQDLDGRSITVNEAQSRGS 89
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 45/87 (51%), Positives = 61/87 (70%)
Query: 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314
+++VG L W D++ L+Q F+ G+V A V+ DRETGRSRGFGFV+ S E N+AI
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 315 LDGQNLDGRAIRVNVAEDRQR--RSSF 339
+DG+ L+GR IRVN+A +R RSSF
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRSSF 122
Score = 159 (61.0 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 35/84 (41%), Positives = 47/84 (55%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
+KLFVG L + D L F G V A VI +RET RSRGFGFV+ S + A A++
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQP 243
+++GR + VN A R + P
Sbjct: 95 EMDGKELNGRQIRVNLATERSSAP 118
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 229 (85.7 bits), Expect = 6.6e-19, P = 6.6e-19
Identities = 56/184 (30%), Positives = 94/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 43 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 102
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 103 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 154
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 155 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPS 214
Query: 335 RRSS 338
++SS
Sbjct: 215 QKSS 218
Score = 141 (54.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 282 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 341
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 342 ASLNGYRLGDRVLQVSFKTNKAHKS 366
Score = 120 (47.3 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 345 NGYRLGDRVLQVS 357
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 229 (85.7 bits), Expect = 6.6e-19, P = 6.6e-19
Identities = 56/184 (30%), Positives = 94/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 43 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 102
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 103 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 154
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 155 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPS 214
Query: 335 RRSS 338
++SS
Sbjct: 215 QKSS 218
Score = 141 (54.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 282 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 341
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 342 ASLNGYRLGDRVLQVSFKTNKAHKS 366
Score = 120 (47.3 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 345 NGYRLGDRVLQVS 357
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 236 (88.1 bits), Expect = 6.8e-19, P = 6.8e-19
Identities = 58/187 (31%), Positives = 102/187 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D +KL +F K G V+ + E +SRGFGFV+ E+A++AV+
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+L+ V +A + + R FE G +YV NL +D+ RL
Sbjct: 252 NGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ D GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERQA 376
Score = 214 (80.4 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 52/179 (29%), Positives = 98/179 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A+E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F +Y+ N ++D+ +L+ +FS++G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVYIKNFGEDMDDDKLKDIFSKYGN 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ RV+ D E G+SRGFGFV+ + A+ ++G+ ++G+ I V A+ + R +
Sbjct: 217 AMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQT 274
Score = 179 (68.1 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 53/180 (29%), Positives = 88/180 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ I GR + + + +R P + + G I++ NL +DN L FS G
Sbjct: 71 TMNFDVIKGRPVRIMWS-------QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+++ +VV D E G S+G+GFV ++ AI ++G L+ R + V + R+ R +
Sbjct: 124 NILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 231 (86.4 bits), Expect = 6.9e-19, P = 6.9e-19
Identities = 56/184 (30%), Positives = 95/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 85 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 144
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 145 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 196
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G A I V A +
Sbjct: 197 YGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPS 256
Query: 335 RRSS 338
+++S
Sbjct: 257 QKTS 260
Score = 141 (54.7 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 324 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 383
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 384 ASLNGYRLGDRVLQVSFKTNKTHKS 408
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 387 NGYRLGDRVLQVS 399
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 230 (86.0 bits), Expect = 7.1e-19, P = 7.1e-19
Identities = 57/184 (30%), Positives = 94/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+L LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 65 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEK 124
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 125 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 176
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 177 FGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPS 236
Query: 335 RRSS 338
++SS
Sbjct: 237 QKSS 240
Score = 140 (54.3 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 304 GWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAI 363
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ ++
Sbjct: 364 ASLNGYRLGDRVLQVSFKTNKTHKA 388
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L +F G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 367 NGYRLGDRVLQVS 379
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 229 (85.7 bits), Expect = 7.2e-19, P = 7.2e-19
Identities = 56/184 (30%), Positives = 94/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 48 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 107
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 108 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 159
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 160 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPS 219
Query: 335 RRSS 338
++SS
Sbjct: 220 QKSS 223
Score = 141 (54.7 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 287 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 346
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 347 ASLNGYRLGDRVLQVSFKTNKAHKS 371
Score = 120 (47.3 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 350 NGYRLGDRVLQVS 362
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 229 (85.7 bits), Expect = 7.4e-19, P = 7.4e-19
Identities = 56/184 (30%), Positives = 94/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 36 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 147
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPS 207
Query: 335 RRSS 338
++SS
Sbjct: 208 QKSS 211
Score = 141 (54.7 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 289 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 349 ASLNGYRLGDRVLQVSFKTNKAHKS 373
Score = 120 (47.3 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 352 NGYRLGDRVLQVS 364
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 229 (85.7 bits), Expect = 7.4e-19, P = 7.4e-19
Identities = 56/184 (30%), Positives = 94/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 36 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 147
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPS 207
Query: 335 RRSS 338
++SS
Sbjct: 208 QKSS 211
Score = 141 (54.7 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 289 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 349 ASLNGYRLGDRVLQVSFKTNKAHKS 373
Score = 120 (47.3 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 352 NGYRLGDRVLQVS 364
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 229 (85.7 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 56/184 (30%), Positives = 94/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 43 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 102
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 103 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 154
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 155 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPS 214
Query: 335 RRSS 338
++SS
Sbjct: 215 QKSS 218
Score = 141 (54.7 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 296 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 356 ASLNGYRLGDRVLQVSFKTNKAHKS 380
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 359 NGYRLGDRVLQVS 371
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 229 (85.7 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 56/184 (30%), Positives = 94/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 43 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 102
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 103 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 154
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 155 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPS 214
Query: 335 RRSS 338
++SS
Sbjct: 215 QKSS 218
Score = 141 (54.7 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 296 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 356 ASLNGYRLGDRVLQVSFKTNKAHKS 380
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 359 NGYRLGDRVLQVS 371
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 229 (85.7 bits), Expect = 8.5e-19, P = 8.5e-19
Identities = 56/184 (30%), Positives = 94/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 59 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 118
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 119 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 170
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 171 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPS 230
Query: 335 RRSS 338
++SS
Sbjct: 231 QKSS 234
Score = 141 (54.7 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 298 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 357
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 358 ASLNGYRLGDRVLQVSFKTNKAHKS 382
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 361 NGYRLGDRVLQVS 373
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 235 (87.8 bits), Expect = 8.7e-19, P = 8.7e-19
Identities = 59/187 (31%), Positives = 100/187 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D +L +F + G +V+ + T RS+GFGFV EEA+KAV
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +I+GR++ V +A R + R FE G +YV NL +D+ RL
Sbjct: 252 NGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS +G + +A+V+ E G S+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 221 (82.9 bits), Expect = 2.8e-17, P = 2.8e-17
Identities = 56/179 (31%), Positives = 94/179 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + SRG GFV T E A +A++
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIQTM 158
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V R + E R E F +Y+ N ++D+ RL ++FS GK
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEFGARAME--FTNVYIKNFGDDMDDNRLREIFSRFGK 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +V+ D TGRS+GFGFV E A+A ++G+ ++GR + V A+ R R S
Sbjct: 217 TLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQS 274
Score = 169 (64.5 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 51/180 (28%), Positives = 87/180 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + + RS G+ ++ +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ I GR + + + +R P + + G +++ NL +DN L FS G
Sbjct: 71 TMNFEVIKGRPVRIMWS-------QRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG 123
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+++ +VV D E G SRG GFV ++ AI ++G L+ R + V + R+ R +
Sbjct: 124 NILSCKVVCD-ENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREA 181
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 229 (85.7 bits), Expect = 8.7e-19, P = 8.7e-19
Identities = 56/184 (30%), Positives = 94/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 47 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 106
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 107 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 158
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 159 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPS 218
Query: 335 RRSS 338
++SS
Sbjct: 219 QKSS 222
Score = 141 (54.7 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 300 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 359
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 360 ASLNGYRLGDRVLQVSFKTNKAHKS 384
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 363 NGYRLGDRVLQVS 375
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 235 (87.8 bits), Expect = 8.8e-19, P = 8.8e-19
Identities = 57/187 (30%), Positives = 102/187 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D ++L LF+K G +V+ + T +SRGFGFV+ E+A KAVE
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTD-PTGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +Y+ NL +D+ +L
Sbjct: 253 NGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 312
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 313 KEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 370
Query: 332 DRQRRSS 338
++ R +
Sbjct: 371 RKEERKA 377
Score = 210 (79.0 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 46/177 (25%), Positives = 95/177 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+ FV T + A++A+E
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 159
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ ++ R + V + R + + +Y+ N ++D+ RL+++F ++GK +
Sbjct: 160 NGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTL 219
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+ +V+ D TG+SRGFGFV+ + N A+ ++G L+G+ + V A+ + R +
Sbjct: 220 SVKVMTD-PTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQA 275
Score = 169 (64.5 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 53/181 (29%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L D+ L F AG V V + T RS G+ +V +AE+A++
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G +++ NL +DN L FS
Sbjct: 72 TMN-FD-------VVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 123
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+ FV ++ + AI ++G L+ R + V + R+ R
Sbjct: 124 GNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 181
Query: 338 S 338
+
Sbjct: 182 A 182
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 229 (85.7 bits), Expect = 8.9e-19, P = 8.9e-19
Identities = 56/184 (30%), Positives = 94/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 48 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 107
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 108 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 159
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 160 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPS 219
Query: 335 RRSS 338
++SS
Sbjct: 220 QKSS 223
Score = 141 (54.7 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 301 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 361 ASLNGYRLGDRVLQVSFKTNKAHKS 385
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 364 NGYRLGDRVLQVS 376
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 229 (85.7 bits), Expect = 8.9e-19, P = 8.9e-19
Identities = 56/184 (30%), Positives = 94/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 48 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 107
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 108 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 159
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 160 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPS 219
Query: 335 RRSS 338
++SS
Sbjct: 220 QKSS 223
Score = 141 (54.7 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 301 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 361 ASLNGYRLGDRVLQVSFKTNKAHKS 385
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 364 NGYRLGDRVLQVS 376
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 232 (86.7 bits), Expect = 8.9e-19, P = 8.9e-19
Identities = 58/187 (31%), Positives = 103/187 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 25 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 83
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 84 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 143
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 144 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 201
Query: 332 DRQRRSS 338
++ R +
Sbjct: 202 RKEERQA 208
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 226 (84.6 bits), Expect = 9.7e-19, P = 9.7e-19
Identities = 55/184 (29%), Positives = 95/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+L LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 147
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPS 207
Query: 335 RRSS 338
++++
Sbjct: 208 QKTN 211
Score = 143 (55.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 262 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 321
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ ++
Sbjct: 322 ASLNGYRLGDRVLQVSFKTNKTHKA 346
Score = 118 (46.6 bits), Expect = 0.00015, P = 0.00015
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L +F G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 325 NGYRLGDRVLQVS 337
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 234 (87.4 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 60/187 (32%), Positives = 100/187 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
++V NL DVD L LF + G + +V+ + ++ SRGFGFV E+A+KAV
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ ++ GRLL V +A R + R FE G +YV NL +D+ +L
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ F+ +G + +A+V+ E G S+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFAPYGMITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 214 (80.4 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 56/179 (31%), Positives = 93/179 (51%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + SRGFGFV T E A+ A+
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DDHGSRGFGFVHFETHEAAQNAIRTM 158
Query: 222 HRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F IYV NL +VD L+ +FS+ GK
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALE--FTNIYVKNLHVDVDERCLQDLFSQFGK 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+++ +V+ D ++G SRGFGFV + A+ ++G+ + GR + V A+ R R +
Sbjct: 217 ILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQN 274
Score = 173 (66.0 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 51/180 (28%), Positives = 88/180 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ ++ +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ I G+ + + + +R P + + G +++ NL +DN L FS G
Sbjct: 71 TMNFEVIKGQPIRIMWS-------QRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFG 123
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+++ +VV D + G SRGFGFV + +AI ++G L+ R + V + R+ R +
Sbjct: 124 NILSCKVVCD-DHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREA 181
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 232 (86.7 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 60/186 (32%), Positives = 94/186 (50%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
+ KLF+G + +D + E+L F G V A ++ +R T R+RGFGFV + AE +
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE--I 62
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQP----ERAPRVF-EPGF-----RIYVGNLPWEVDNA 268
+ +++IDGRL+ KA PR Q + + PG +I+VG LP V +
Sbjct: 63 VITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTES 122
Query: 269 RLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328
+ F + G + V+YD T R RGFGF+T SE E + + L+G+ + V
Sbjct: 123 DFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSE-EAVEKVLLKTFHELNGKMVEVK 181
Query: 329 VAEDRQ 334
A ++
Sbjct: 182 RAVPKE 187
Score = 152 (58.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV-E 219
K+FVG LP V FE+ GT V+Y+ T R RGFGF+T + E EK + +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQP--ERAP 247
FH +++G+++ V +A P+ P R+P
Sbjct: 169 TFH--ELNGKMVEVKRAVPKELSPGPSRSP 196
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 53/174 (30%), Positives = 87/174 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L +E+ G + V+ + + RSRGFGFVT S++ E + A+
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ IDGR++ +A R + P +++VG + + + L F E+GK+
Sbjct: 81 -RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 137
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++ DR++G+ RGFGFVT + D I ++G V A RQ
Sbjct: 138 DTIEIITDRQSGKKRGFGFVTFDDHDPV-DKIVLQKYHTINGHNAEVRKALSRQ 190
Score = 134 (52.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 241 TQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 299
T P ER R E ++++G L +E L + + GK+ + V+ D + RSRGFGF
Sbjct: 6 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 65
Query: 300 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
VT SS E++ A+AA ++DGR + A R+
Sbjct: 66 VTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVARE 99
Score = 127 (49.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV-E 219
KLFVG + D + L FE+ G ++ E+I +R++ + RGFGFVT + +K V +
Sbjct: 112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 171
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPE 244
+H I+G V KA R E
Sbjct: 172 KYHT--INGHNAEVRKALSRQEMQE 194
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 40/81 (49%), Positives = 60/81 (74%)
Query: 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313
+R +VG L W D+ L+ FS++G V++++++ DRETGRSRGFGFVT +S+ + AI
Sbjct: 6 YRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE 65
Query: 314 ALDGQNLDGRAIRVNVAEDRQ 334
A++GQ+LDGR I VN A+ R+
Sbjct: 66 AMNGQDLDGRNITVNEAQSRR 86
Score = 167 (63.8 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
+ FVG L + D + L F K G V +++I +RET RSRGFGFVT ++ E +A+E
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 221 FHRYDIDGRLLTVNKAAPR 239
+ D+DGR +TVN+A R
Sbjct: 67 MNGQDLDGRNITVNEAQSR 85
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 228 (85.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 60/184 (32%), Positives = 96/184 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV N D+D EKL +F G E +VI + + +S+GFGFV T E A+KAV
Sbjct: 201 VFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLE 271
H I+G++L V +A + + R FE PG IY+ NL +D+ +L+
Sbjct: 260 HGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLK 319
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + A+V+ E G+ +GFG V SS + A+ ++G+ + + + V + +
Sbjct: 320 EEFSSFGSISRAKVMV--EVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
Query: 332 DRQR 335
R R
Sbjct: 378 ARCR 381
Score = 169 (64.5 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 42/176 (23%), Positives = 89/176 (50%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D+ L LF G + +V+ + + S+G+ +V ++ A +A+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHM 165
Query: 222 HRYDIDGRLLTVNKAA-PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ ++ R + V + P E R ++V N ++D+ +L+++FS +G
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPT 225
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
+ +V+ D +G+S+GFGFV + A+ L G++++G+ + V A+ + R
Sbjct: 226 ESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIER 280
Score = 152 (58.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 49/169 (28%), Positives = 82/169 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV + L F AG + + + T G+G+V +AE A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 220 MFHRYD-IDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
+ +D I+G+ + +QP+ R G I++ NL +DN L +FS G
Sbjct: 78 TMN-FDLINGKPFRL-----MWSQPDDRLRKSGVG-NIFIKNLDKSIDNRALFYLFSAFG 130
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 327
+++ +VV D + G S+G+ +V S N AI ++G L+ R + V
Sbjct: 131 NILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 53/174 (30%), Positives = 87/174 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L +E+ G + V+ + + RSRGFGFVT S++ E + A+
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ IDGR++ +A R + P +++VG + + + L F E+GK+
Sbjct: 70 -RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 126
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++ DR++G+ RGFGFVT + D I ++G V A RQ
Sbjct: 127 DTIEIITDRQSGKKRGFGFVTFDDHDPV-DKIVLQKYHTINGHNAEVRKALSRQ 179
Score = 127 (49.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV-E 219
KLFVG + D + L FE+ G ++ E+I +R++ + RGFGFVT + +K V +
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPE 244
+H I+G V KA R E
Sbjct: 161 KYHT--INGHNAEVRKALSRQEMQE 183
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 226 (84.6 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 53/174 (30%), Positives = 87/174 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L +E+ G + V+ + + RSRGFGFVT S++ E + A+
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ IDGR++ +A R + P +++VG + + + L F E+GK+
Sbjct: 82 -RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 138
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++ DR++G+ RGFGFVT + D I ++G V A RQ
Sbjct: 139 DTIEIITDRQSGKKRGFGFVTFDDHDPV-DKIVLQKHHTINGHNAEVRKALSRQ 191
Score = 134 (52.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 241 TQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 299
T P ER R E ++++G L +E L + + GK+ + V+ D + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 300 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
VT SS E++ A+AA ++DGR + A R+
Sbjct: 67 VTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVARE 100
Score = 130 (50.8 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 30/84 (35%), Positives = 44/84 (52%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG + D + L FE+ G ++ E+I +R++ + RGFGFVT + +K V
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPE 244
H + I+G V KA R E
Sbjct: 173 KH-HTINGHNAEVRKALSRQEMQE 195
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 218 (81.8 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 51/172 (29%), Positives = 94/172 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L + NL Y E L +FEKA +++ + + +S+G+ F+ ++ E+A++A+
Sbjct: 493 LVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSC 548
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
++ +I+GR + + PRG+ R+ +P ++V L + L++ F G V
Sbjct: 549 NKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFD--GSV- 601
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
AR+V DRETG S+GFGFV +SE + A A++ +DG + ++ A+ +
Sbjct: 602 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 653
Score = 157 (60.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 50/180 (27%), Positives = 89/180 (49%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
DA+ L NLPY V ++L +FE A VEI V + +S+G ++ T +AEK
Sbjct: 396 DARTLLAKNLPYKVTQDELKEVFEDA--VEIRLV---SKDGKSKGIAYIEFKTEADAEKT 450
Query: 218 VEMFHRYDIDGRLLTVNKAAPRG-TQPERAPR--VFEPGFRIYV-GNLPWEVDNARLEQV 273
E +IDGR +++ +G +Q R + + + V NL + L++V
Sbjct: 451 FEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEV 510
Query: 274 FSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
F E + V + G+S+G+ F+ +S + +A+ + + + ++GRAIR+ + R
Sbjct: 511 F-EKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 566
Score = 131 (51.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 54/222 (24%), Positives = 94/222 (42%)
Query: 114 DETEGNLSDWGEPEGEDTVVEA-GERQXXXXXXXXXXXXX-----XXXXXXDAKLFVGNL 167
D+ E + + E E E+ V EA G+R+ LFVGNL
Sbjct: 260 DDEEEDEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFNLFVGNL 319
Query: 168 PYDVDSEKLAM----LFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHR 223
+ + +L LF K + + +V SR FG+V + E+ EKA+E+
Sbjct: 320 NFSKSAPELKTGISDLFAK-NDLAVVDV----RIGVSRKFGYVDFESAEDLEKALELTG- 373
Query: 224 YDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNA 283
+ G + + K + ++ +R R + NLP++V L++VF + V
Sbjct: 374 LKVFGNEIKLEKPKGKDSKKDRDART------LLAKNLPYKVTQDELKEVFED---AVEI 424
Query: 284 RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 325
R+V + G+S+G ++ +E + G +DGR+I
Sbjct: 425 RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSI 464
Score = 126 (49.4 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFV L D E L F+ G+V A ++ +RET S+GFGFV ++ E+A+ A E
Sbjct: 579 LFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 635
Query: 222 HRYDIDGRLLTVNKAAPRG 240
+IDG +T++ A P+G
Sbjct: 636 EDGEIDGNKVTLDWAKPKG 654
Score = 41 (19.5 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 14/63 (22%), Positives = 25/63 (39%)
Query: 75 AQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVE 134
++ D D++ED+D T+ D+ + + D E E +D+ E
Sbjct: 153 SEEEDEEDEDEDEDEFEPTVMKAAAAAPASDEEEDDEEDDDEDDDEEDEDEDE-DDSEEE 211
Query: 135 AGE 137
A E
Sbjct: 212 AME 214
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 226 (84.6 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 55/184 (29%), Positives = 95/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+L LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 147
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPS 207
Query: 335 RRSS 338
++++
Sbjct: 208 QKTN 211
Score = 143 (55.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ ++
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHKA 359
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L +F G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 338 NGYRLGDRVLQVS 350
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 226 (84.6 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 55/184 (29%), Positives = 95/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+L LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 147
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPS 207
Query: 335 RRSS 338
++++
Sbjct: 208 QKTN 211
Score = 143 (55.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 276 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 335
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ ++
Sbjct: 336 ASLNGYRLGDRVLQVSFKTNKTHKA 360
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L +F G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 339 NGYRLGDRVLQVS 351
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 226 (84.6 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 60/188 (31%), Positives = 90/188 (47%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG L + E L F + G V ++ ++ T++SRGFGFV V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 69
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERA-PRVF----EP------GFRIYVGNLPWEVDNAR 269
+ +DGR + PRG QPER+ PR EP +I+VG +P
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETE 129
Query: 270 LEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
L++ F+ G V ++YD E R RGFGF+T E ++ A+ + ++ G+ + V
Sbjct: 130 LKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 188
Query: 330 AEDRQRRS 337
AE R +S
Sbjct: 189 AEPRDSKS 196
Score = 149 (57.5 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG +P++ +L F + G V +IY+ E R RGFGF+T + ++AV M
Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 174
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPE 244
H +DI G+ + V +A PR ++ +
Sbjct: 175 -HFHDIMGKKVEVKRAEPRDSKSQ 197
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 229 (85.7 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 54/177 (30%), Positives = 94/177 (53%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG L + S + F K G + + ++ +R+T + RGFGFVT + +K ++
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
H I G+ + + + PRG+ F+ +I+VG +P VD+ ++ F + G++
Sbjct: 103 NHI--IIGKQVEIKRTIPRGSMSSND---FKTK-KIFVGGIPSSVDDDEFKEFFMQFGEL 156
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
+++ D TGRSRGFGFVT SE ++ +A + L G + + AE ++ S
Sbjct: 157 KEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNS 213
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 233 (87.1 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 61/187 (32%), Positives = 99/187 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
++V NLP DVD + L LF + G + +V+ + + SR FGFV EEA+KAV
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ ++ GRLL +A R + R FE G +YV NL +D+ +L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS +G + +A+V+ E G S+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 209 (78.6 bits), Expect = 5.2e-16, P = 5.2e-16
Identities = 56/179 (31%), Positives = 91/179 (50%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V + SRGFGFV T E A++A+
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 222 HRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F IYV NLP +VD L+ +FS+ GK
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALE--FTNIYVKNLPVDVDEQGLQDLFSQFGK 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+++ +V+ D +G SR FGFV E A+ ++G+ + GR + A+ R R +
Sbjct: 217 MLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Score = 169 (64.5 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 51/180 (28%), Positives = 86/180 (47%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ ++ +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ + G+ + + + +R P + + G I++ NL +DN L FS G
Sbjct: 71 TMNFEMLKGQPIRIMWS-------QRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+++ +V D E G SRGFGFV + AI ++G L+ R + V + R+ R +
Sbjct: 124 NILSCKVACD-EHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 57/178 (32%), Positives = 88/178 (49%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L + E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + R P +I+VG + + L F ++GK+
Sbjct: 68 -RPHKVDGRVVEPKRAVSR--EDSRRPGAHLTVKKIFVGE---DTEEHHLRDYFEQYGKI 121
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 122 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 178
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 232 (86.7 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 56/175 (32%), Positives = 92/175 (52%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
D K+F+G L ++ + L F + G V+ V+ + T RSRGFGF+T + +
Sbjct: 109 DGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVM 168
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
H Y +DG+++ +A PR Q E+ ++F VG + E +Q F + G
Sbjct: 169 VKEH-Y-LDGKIIDPKRAIPRDEQ-EKTSKIF-------VGGVSQEATEQDFKQFFMQFG 218
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
+V++A ++ D++TGR RGFGFVT SE + A++ + G+ I V A+ R
Sbjct: 219 RVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR--PLEILGKTIEVKKAQPR 271
Score = 140 (54.3 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 33/104 (31%), Positives = 54/104 (51%)
Query: 238 PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGF 297
P G + + E G ++++G L WE + L++ FS+ G+V V+ D TGRSRGF
Sbjct: 95 PVGEPEPQGTGIKEDG-KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGF 153
Query: 298 GFVTMSSETELNDAIAA---LDGQNLDGRAIRVNVAEDRQRRSS 338
GF+T +N + LDG+ +D + + D Q ++S
Sbjct: 154 GFLTFKDPKTVNTVMVKEHYLDGKIIDPKRA---IPRDEQEKTS 194
Score = 117 (46.2 bits), Expect = 0.00040, P = 0.00040
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
+K+FVG + + + F + G V A ++ +++T R RGFGFVT + E A+
Sbjct: 194 SKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALS 253
Query: 220 MFHRYDIDGRLLTVNKAAPRG 240
+I G+ + V KA PRG
Sbjct: 254 --RPLEILGKTIEVKKAQPRG 272
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 226 (84.6 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 59/177 (33%), Positives = 90/177 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMS---TVEEAEKA 217
KLF+G L Y E L FEK G + V+ + T RSRGFGF+T S ++EA+K+
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91
Query: 218 VEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEH 277
H+ IDGR++ +A PR Q +P +++VG L + D + F
Sbjct: 92 RP--HK--IDGRVVEPKRAVPR--QDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHF 145
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
G +V+ +V D+ETG+ RGF FV ++ + Q L+G+ + V A +Q
Sbjct: 146 GNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQ-LNGKMVDVKKALPKQ 201
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 233 (87.1 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 57/179 (31%), Positives = 101/179 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL +DS+ L F G + +V+ + + S+G+GFV T EEAE+A+E
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 222 HRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + + R Q E R E F +Y+ NL ++D+ RL+ +FS G
Sbjct: 159 NGMFLNDRKVFVGRFKSRRDRQAELGARAKE--FTNVYIKNLGEDMDDERLQDLFSRFGP 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +V+ D E+G+S+GFGFV+ + A+ ++G++L+G+ I V A+ + R +
Sbjct: 217 ALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQT 274
Score = 187 (70.9 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 58/181 (32%), Positives = 91/181 (50%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V +R T RS G+ V +E+AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G I+V NL +D+ L FS
Sbjct: 71 TMN-FD-------VIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+GFV ++ E AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQ 180
Query: 338 S 338
+
Sbjct: 181 A 181
Score = 139 (54.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 37/127 (29%), Positives = 68/127 (53%)
Query: 212 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLE 271
++ E+ E+ H++ G++ +K +R+ R G +YV NL +D+ RL
Sbjct: 268 KKVERQTELKHKF---GQMKQ-DKPKIEQVPQDRSVRC--QGVNLYVKNLDDGIDDERLR 321
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 322 KEFSPFGTITSAKVTM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 379
Query: 332 DRQRRSS 338
++ R +
Sbjct: 380 RKEERQA 386
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 232 (86.7 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 58/187 (31%), Positives = 103/187 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 188 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 247
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 248 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 305
Query: 332 DRQRRSS 338
++ R +
Sbjct: 306 RKEERQA 312
Score = 209 (78.6 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 51/179 (28%), Positives = 98/179 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A+E
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 94
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F +Y+ N ++D+ RL+++F + G
Sbjct: 95 NGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVYIKNFGEDMDDERLKELFGKFGP 152
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +V+ D E+G+S+GFGFV+ + A+ ++G+ L+G+ I V A+ + R +
Sbjct: 153 ALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 210
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 225 (84.3 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 53/174 (30%), Positives = 87/174 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L +E+ G + V+ + + RSRGFGFVT S++ E + A+
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ IDGR++ +A R + P +++VG + + + L F E+GK+
Sbjct: 81 -RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 137
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++ DR++G+ RGFGFVT + D I ++G V A RQ
Sbjct: 138 DTIEIITDRQSGKKRGFGFVTFDDHDPV-DKIVLQKYHTINGHNAEVRKALSRQ 190
Score = 134 (52.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 241 TQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 299
T P ER R E ++++G L +E L + + GK+ + V+ D + RSRGFGF
Sbjct: 6 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 65
Query: 300 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
VT SS E++ A+AA ++DGR + A R+
Sbjct: 66 VTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVARE 99
Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV-E 219
KLFVG + D + L FE+ G ++ E+I +R++ + RGFGFVT + +K V +
Sbjct: 112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 171
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPE 244
+H I+G V KA R E
Sbjct: 172 KYHT--INGHNAEVRKALSRQEMQE 194
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 224 (83.9 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 53/174 (30%), Positives = 87/174 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L + E L +E+ G + V+ + + RSRGFGFVT S++ E + A+
Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ IDGR++ +A R + P +++VG + + + L F+E+GK+
Sbjct: 70 -RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKI 126
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++ DR++G+ RGFGFVT + D I ++G V A RQ
Sbjct: 127 DTIEIITDRQSGKKRGFGFVTFDDHDPV-DKIVLQKYHTINGHNAEVRKALSRQ 179
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 225 (84.3 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 53/174 (30%), Positives = 87/174 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L +E+ G + V+ + + RSRGFGFVT S++ E + A+
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ IDGR++ +A R + P +++VG + + + L F E+GK+
Sbjct: 82 -RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 138
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++ DR++G+ RGFGFVT + D I ++G V A RQ
Sbjct: 139 DTIEIITDRQSGKKRGFGFVTFDDHDPV-DKIVLQKYHTINGHNAEVRKALSRQ 191
Score = 134 (52.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 241 TQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 299
T P ER R E ++++G L +E L + + GK+ + V+ D + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 300 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
VT SS E++ A+AA ++DGR + A R+
Sbjct: 67 VTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVARE 100
Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV-E 219
KLFVG + D + L FE+ G ++ E+I +R++ + RGFGFVT + +K V +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPE 244
+H I+G V KA R E
Sbjct: 173 KYHT--INGHNAEVRKALSRQEMQE 195
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 225 (84.3 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 53/174 (30%), Positives = 87/174 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L +E+ G + V+ + + RSRGFGFVT S++ E + A+
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ IDGR++ +A R + P +++VG + + + L F E+GK+
Sbjct: 82 -RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 138
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++ DR++G+ RGFGFVT + D I ++G V A RQ
Sbjct: 139 DTIEIITDRQSGKKRGFGFVTFDDHDPV-DKIVLQKYHTINGHNAEVRKALSRQ 191
Score = 134 (52.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 241 TQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 299
T P ER R E ++++G L +E L + + GK+ + V+ D + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 300 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
VT SS E++ A+AA ++DGR + A R+
Sbjct: 67 VTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVARE 100
Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV-E 219
KLFVG + D + L FE+ G ++ E+I +R++ + RGFGFVT + +K V +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPE 244
+H I+G V KA R E
Sbjct: 173 KYHT--INGHNAEVRKALSRQEMQE 195
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 225 (84.3 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 53/174 (30%), Positives = 87/174 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L +E+ G + V+ + + RSRGFGFVT S++ E + A+
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ IDGR++ +A R + P +++VG + + + L F E+GK+
Sbjct: 82 -RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 138
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++ DR++G+ RGFGFVT + D I ++G V A RQ
Sbjct: 139 DTIEIITDRQSGKKRGFGFVTFDDHDPV-DKIVLQKYHTINGHNAEVRKALSRQ 191
Score = 134 (52.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 241 TQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 299
T P ER R E ++++G L +E L + + GK+ + V+ D + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 300 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
VT SS E++ A+AA ++DGR + A R+
Sbjct: 67 VTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVARE 100
Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV-E 219
KLFVG + D + L FE+ G ++ E+I +R++ + RGFGFVT + +K V +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPE 244
+H I+G V KA R E
Sbjct: 173 KYHT--INGHNAEVRKALSRQEMQE 195
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 226 (84.6 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 55/184 (29%), Positives = 94/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 48 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 107
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 108 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 159
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 160 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPS 219
Query: 335 RRSS 338
+++S
Sbjct: 220 QKTS 223
Score = 141 (54.7 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 287 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 346
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 347 ASLNGYRLGDRVLQVSFKTNKTHKS 371
Score = 120 (47.3 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 350 NGYRLGDRVLQVS 362
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 224 (83.9 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 53/174 (30%), Positives = 87/174 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L +E+ G + V+ + + RSRGFGFVT S++ E + A+
Sbjct: 18 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 77
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ IDGR++ +A R + P +++VG + + + L F E+GK+
Sbjct: 78 -RPHTIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 134
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++ DR++G+ RGFGFVT + D I ++G V A RQ
Sbjct: 135 DTIEIITDRQSGKKRGFGFVTFDDHDPV-DKIVLQKYHTINGHNAEVRKALSRQ 187
Score = 131 (51.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 34/97 (35%), Positives = 52/97 (53%)
Query: 238 PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGF 297
PRG + E R E ++++G L +E L + + GK+ + V+ D + RSRGF
Sbjct: 2 PRGDR-ESDWREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGF 60
Query: 298 GFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
GFVT SS E++ A+AA +DGR + A R+
Sbjct: 61 GFVTFSSMAEVDAAMAARP-HTIDGRVVEPKRAVARE 96
Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV-E 219
KLFVG + D + L FE+ G ++ E+I +R++ + RGFGFVT + +K V +
Sbjct: 109 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 168
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPE 244
+H I+G V KA R E
Sbjct: 169 KYHT--INGHNAEVRKALSRQEMQE 191
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 232 (86.7 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 58/187 (31%), Positives = 103/187 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERQA 376
Score = 209 (78.6 bits), Expect = 5.5e-16, P = 5.5e-16
Identities = 51/179 (28%), Positives = 98/179 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A+E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F +Y+ N ++D+ RL+++F + G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVYIKNFGEDMDDERLKELFGKFGP 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +V+ D E+G+S+GFGFV+ + A+ ++G+ L+G+ I V A+ + R +
Sbjct: 217 ALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 175 (66.7 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 55/181 (30%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G I++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+GFV ++ AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 232 (86.7 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 58/187 (31%), Positives = 103/187 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERQA 376
Score = 209 (78.6 bits), Expect = 5.5e-16, P = 5.5e-16
Identities = 51/179 (28%), Positives = 98/179 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A+E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F +Y+ N ++D+ RL+++F + G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVYIKNFGEDMDDERLKELFGKFGP 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +V+ D E+G+S+GFGFV+ + A+ ++G+ L+G+ I V A+ + R +
Sbjct: 217 ALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 175 (66.7 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 55/181 (30%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G I++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+GFV ++ AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 218 (81.8 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 51/172 (29%), Positives = 94/172 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L + NL Y E L +FEKA +++ + + +S+G+ F+ ++ E+A++A+
Sbjct: 490 LVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSC 545
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
++ +I+GR + + PRG+ R+ +P ++V L + L++ F G V
Sbjct: 546 NKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFD--GSV- 598
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
AR+V DRETG S+GFGFV +SE + A A++ +DG + ++ A+ +
Sbjct: 599 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 650
Score = 155 (59.6 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 46/180 (25%), Positives = 86/180 (47%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
DA+ L NLPY V ++L +FE A + + + +S+G ++ T +AEK
Sbjct: 393 DARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAEKT 447
Query: 218 VEMFHRYDIDGRLLTVNKAAPRG-TQPERAPR--VFEPGFRIYV-GNLPWEVDNARLEQV 273
E +IDGR +++ +G Q R + + + V NL + L++V
Sbjct: 448 FEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEV 507
Query: 274 FSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
F E + V + G+S+G+ F+ +S + +A+ + + + ++GRAIR+ + R
Sbjct: 508 F-EKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 563
Score = 132 (51.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 41/178 (23%), Positives = 81/178 (45%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFVGNL ++ + +L V+ R +R FG+V + E+ EKA+E+
Sbjct: 311 LFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVR-IGMTRKFGYVDFESAEDLEKALELT 369
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ G + + K + ++ ER R + NLP++V L++VF + ++
Sbjct: 370 G-LKVFGNEIKLEKPKGKDSKKERDART------LLAKNLPYKVTQDELKEVFEDAAEI- 421
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 339
R+V + G+S+G ++ +E + G +DGR+I + ++ + +
Sbjct: 422 --RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDY 475
Score = 126 (49.4 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFV L D E L F+ G+V A ++ +RET S+GFGFV ++ E+A+ A E
Sbjct: 576 LFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 632
Query: 222 HRYDIDGRLLTVNKAAPRG 240
+IDG +T++ A P+G
Sbjct: 633 EDGEIDGNKVTLDWAKPKG 651
Score = 39 (18.8 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 82 DQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVE 134
D++ED+D I DE + + D E + E+ +E
Sbjct: 160 DEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDEDDDEEDDSEEEAME 212
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 226 (84.6 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 55/184 (29%), Positives = 95/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+L LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 64 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 123
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 124 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 175
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 176 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPS 235
Query: 335 RRSS 338
++++
Sbjct: 236 QKTN 239
Score = 143 (55.4 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 303 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 362
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ ++
Sbjct: 363 ASLNGYRLGDRVLQVSFKTNKTHKA 387
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L +F G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 366 NGYRLGDRVLQVS 378
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 226 (84.6 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 55/184 (29%), Positives = 95/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+L LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 65 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 124
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 125 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 176
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 177 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPS 236
Query: 335 RRSS 338
++++
Sbjct: 237 QKTN 240
Score = 143 (55.4 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 304 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 363
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ ++
Sbjct: 364 ASLNGYRLGDRVLQVSFKTNKTHKA 388
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L +F G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 367 NGYRLGDRVLQVS 379
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 226 (84.6 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 55/184 (29%), Positives = 95/184 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+L LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 65 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 124
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 125 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 176
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 177 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPS 236
Query: 335 RRSS 338
++++
Sbjct: 237 QKTN 240
Score = 140 (54.3 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 305 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 364
Query: 313 AALDGQNLDGRAIRV 327
A+L+G L R ++V
Sbjct: 365 ASLNGYRLGDRVLQV 379
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L +F G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 222 HRYDIDGRLLTVNK 235
+ Y + R+L V K
Sbjct: 368 NGYRLGDRVLQVFK 381
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 231 (86.4 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 58/187 (31%), Positives = 103/187 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 206
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 207 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 266
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 267 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 324
Query: 332 DRQRRSS 338
++ R +
Sbjct: 325 RKEERQA 331
Score = 207 (77.9 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 51/179 (28%), Positives = 97/179 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A+E
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 113
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F +Y+ N ++D+ RL+ +F + G
Sbjct: 114 NGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVYIKNFGEDMDDERLKDLFGKFGP 171
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +V+ D E+G+S+GFGFV+ + A+ ++G+ L+G+ I V A+ + R +
Sbjct: 172 ALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 229
Score = 140 (54.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 43/144 (29%), Positives = 72/144 (50%)
Query: 197 TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF- 254
T RS G+ +V +AE+A++ + +D V K P R +R P + + G
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPVRIMWSQRDPSLRKSGVG 54
Query: 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314
I++ NL +DN L FS G +++ +VV D E G S+G+GFV ++ AI
Sbjct: 55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 112
Query: 315 LDGQNLDGRAIRVNVAEDRQRRSS 338
++G L+ R + V + R+ R +
Sbjct: 113 MNGMLLNDRKVFVGRFKSRKEREA 136
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 230 (86.0 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 57/180 (31%), Positives = 97/180 (53%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+F+G L +D + L F K GTV +++ + T RSRGFGF++ ++ V+
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
H +DG+++ +A PR Q + +I+VG + +V E+ FS+ G +
Sbjct: 220 QHI--LDGKVIDPKRAIPRDEQDKTG--------KIFVGGIGPDVRPKEFEEFFSQWGTI 269
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR--QRRSS 338
++A+++ D++TG+SRGFGFVT S + D + + R I + AE R Q++SS
Sbjct: 270 IDAQLMLDKDTGQSRGFGFVTYDSADAV-DRVCQNKFIDFKDRKIEIKRAEPRHMQQKSS 328
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 231 (86.4 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 58/187 (31%), Positives = 103/187 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 279
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 280 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 337
Query: 332 DRQRRSS 338
++ R +
Sbjct: 338 RKEERQA 344
Score = 181 (68.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 43/141 (30%), Positives = 79/141 (56%)
Query: 200 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 257
S+G+GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 162
Query: 258 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 317
+ N ++D+ RL+ +F + G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 163 IKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 221
Query: 318 QNLDGRAIRVNVAEDRQRRSS 338
+ L+G+ I V A+ + R +
Sbjct: 222 KELNGKQIYVGRAQKKVERQT 242
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 57/187 (30%), Positives = 102/187 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF A +V++ E+ +S+GFGFV+ E+A+KAV+
Sbjct: 65 VYIKNFGEDMDDERLKDLFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQKAVDEM 120
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 121 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 180
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 181 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 238
Query: 332 DRQRRSS 338
++ R +
Sbjct: 239 RKEERQA 245
Score = 168 (64.2 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 43/141 (30%), Positives = 78/141 (55%)
Query: 200 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 257
S+G+GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 66
Query: 258 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 317
+ N ++D+ RL+ +F G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 67 IKNFGEDMDDERLKDLF---GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 122
Query: 318 QNLDGRAIRVNVAEDRQRRSS 338
+ L+G+ I V A+ + R +
Sbjct: 123 KELNGKQIYVGRAQKKVERQT 143
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 51/162 (31%), Positives = 86/162 (53%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ E+L LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 147
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ 318
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ
Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 106 (42.4 bits), Expect = 0.00075, P = 0.00075
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 256 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315
+ V LP + L+ +F G++ + ++V D+ TG+S G+GFV + AI L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 316 DGQNLDGRAIRVNVA 330
+G L + I+V+ A
Sbjct: 101 NGLRLQTKTIKVSYA 115
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 54/178 (30%), Positives = 90/178 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+ L ++ E L FE+ GT+ V+ + T R RGFGFVT +TVEE + A+
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + + P +I+VG++ + + L + F ++GK+
Sbjct: 68 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKI 124
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I ++G V A +Q +S
Sbjct: 125 EVIEIMTDRGSGQKRGFVFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQEMAS 181
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 231 (86.4 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 58/187 (31%), Positives = 99/187 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+DSEKL +F + G ++ + E RSRGFGFV +A +AV
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKT-LSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++GR+L V +A R + R FE G +YV NL +D+ +L
Sbjct: 252 NGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ F+ +G + +A+V+ D G SRGFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFAPYGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 211 (79.3 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 52/177 (29%), Positives = 94/177 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ N+ +D++ L F G + +V+ + + S+G+GFV T E A +A+E
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAANRAIETM 158
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V R + E + E F +Y+ N ++D+ +L+ +F+E GK
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEMGAKAVE--FTNVYIKNFGEDIDSEKLKNIFTEFGK 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
++ V+ D E GRSRGFGFV + + A+ ++G+ L+GR + V A+ R R
Sbjct: 217 TLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLER 272
Score = 179 (68.1 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 52/180 (28%), Positives = 88/180 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ ++ +AE A++
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ I GR + + + +R P + + G I++ N+ +DN L FS G
Sbjct: 71 TMNYEVIKGRPIRIMWS-------QRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFG 123
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+++ +VV D E G S+G+GFV ++ N AI ++G L+ R + V + R+ R +
Sbjct: 124 NILSCKVVCD-ENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREA 181
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 229 (85.7 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 57/181 (31%), Positives = 96/181 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FVG L ++VD + L FE+ GT+ A VI + ++ RS+G+G+V T E A+ AV
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 222 HRYDIDGRLLTVNKAAPRGTQPE-----RA----PRVFEPGFRIYVGNLPWEVDNARLEQ 272
+IDGR++ ++ + PR P+ RA ++ EP ++VGNL + L
Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLST 384
Query: 273 VFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332
F G + + R+ D ++GR +GFG+VT S + ++G + GR R++ +
Sbjct: 385 AFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDFSTP 443
Query: 333 R 333
R
Sbjct: 444 R 444
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 226 (84.6 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 59/187 (31%), Positives = 89/187 (47%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG L + E L F + G V ++ ++ T++SRGFGFV V
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 59
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERA-PRV-FEPGFR--------IYVGNLPWEVDNARL 270
+ +DGR + PRG QPER P+ ++ G R I+VG +P L
Sbjct: 60 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGSRSDNNKSNKIFVGGIPHNCGETEL 119
Query: 271 EQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
+ F + G V ++YD E R RGFGF+T E ++ A+ + ++ G+ + V A
Sbjct: 120 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 178
Query: 331 EDRQRRS 337
E R +S
Sbjct: 179 EPRDSKS 185
Score = 154 (59.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 35/98 (35%), Positives = 55/98 (56%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG +P++ +L F+K G V +IY+ E R RGFGF+T + ++AV M
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 163
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERA--PRVFEPGFRI 256
H +DI G+ + V +A PR ++ + P + G RI
Sbjct: 164 -HFHDIMGKKVEVKRAEPRDSKSQTPGPPGASQWGSRI 200
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 231 (86.4 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 57/187 (30%), Positives = 100/187 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D ++L +F G +V+ + ++ RSRGFGFV EEA+KAV
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++GR++ V +A R + R FE G +YV NL +D+ RL
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ F +G + +A+V+ E G S+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 221 (82.9 bits), Expect = 2.8e-17, P = 2.8e-17
Identities = 55/179 (30%), Positives = 97/179 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + SRG+GFV T E A +A++
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158
Query: 222 HRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E +V E F +Y+ N ++D+ RL ++FS G
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVME--FTNVYIKNFGEDMDDKRLREIFSAFGN 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +V+ D ++GRSRGFGFV + E A++ ++G+ ++GR I V A+ R R S
Sbjct: 217 TLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQS 274
Score = 174 (66.3 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 51/178 (28%), Positives = 86/178 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L++G+L DV L F AG + V + T RS + ++ +AE+A++
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ I GR + + + +R P + + G +++ NL +DN L FS G
Sbjct: 71 TMNFEVIKGRPIRIMWS-------QRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFG 123
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
+++ +VV D E G SRG+GFV + N AI ++G L+ R + V + R+ R
Sbjct: 124 NILSCKVVCD-EHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRER 179
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 231 (86.4 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 58/187 (31%), Positives = 103/187 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERQA 376
Score = 207 (77.9 bits), Expect = 9.1e-16, P = 9.1e-16
Identities = 51/179 (28%), Positives = 97/179 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A+E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F +Y+ N ++D+ RL+ +F + G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVYIKNFGEDMDDERLKDLFGKFGP 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +V+ D E+G+S+GFGFV+ + A+ ++G+ L+G+ I V A+ + R +
Sbjct: 217 ALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 175 (66.7 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 55/181 (30%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G I++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+GFV ++ AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 231 (86.4 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 58/187 (31%), Positives = 103/187 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERQA 376
Score = 207 (77.9 bits), Expect = 9.1e-16, P = 9.1e-16
Identities = 51/179 (28%), Positives = 97/179 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A+E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F +Y+ N ++D+ RL+ +F + G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVYIKNFGEDMDDERLKDLFGKFGP 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +V+ D E+G+S+GFGFV+ + A+ ++G+ L+G+ I V A+ + R +
Sbjct: 217 ALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 175 (66.7 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 55/181 (30%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G I++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+GFV ++ AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 231 (86.4 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 58/187 (31%), Positives = 103/187 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERQA 376
Score = 207 (77.9 bits), Expect = 9.1e-16, P = 9.1e-16
Identities = 51/179 (28%), Positives = 97/179 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A+E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F +Y+ N ++D+ RL+ +F + G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVYIKNFGEDMDDERLKDLFGKFGP 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +V+ D E+G+S+GFGFV+ + A+ ++G+ L+G+ I V A+ + R +
Sbjct: 217 ALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 175 (66.7 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 55/181 (30%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G I++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+GFV ++ AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 231 (86.4 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 58/187 (31%), Positives = 103/187 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERQA 376
Score = 207 (77.9 bits), Expect = 9.1e-16, P = 9.1e-16
Identities = 51/179 (28%), Positives = 97/179 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A+E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F +Y+ N ++D+ RL+ +F + G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVYIKNFGEDMDDERLKDLFGKFGP 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +V+ D E+G+S+GFGFV+ + A+ ++G+ L+G+ I V A+ + R +
Sbjct: 217 ALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 175 (66.7 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 55/181 (30%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G I++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+GFV ++ AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 231 (86.4 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 58/187 (31%), Positives = 103/187 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERQA 376
Score = 207 (77.9 bits), Expect = 9.1e-16, P = 9.1e-16
Identities = 51/179 (28%), Positives = 97/179 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A+E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F +Y+ N ++D+ RL+ +F + G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVYIKNFGEDMDDERLKDLFGKFGP 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +V+ D E+G+S+GFGFV+ + A+ ++G+ L+G+ I V A+ + R +
Sbjct: 217 ALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 171 (65.3 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 54/181 (29%), Positives = 87/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L D L F AG + V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G I++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+GFV ++ AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 231 (86.4 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 58/187 (31%), Positives = 103/187 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERQA 376
Score = 207 (77.9 bits), Expect = 9.4e-16, P = 9.4e-16
Identities = 51/179 (28%), Positives = 97/179 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A+E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F +Y+ N ++D+ RL+ +F + G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVYIKNFGEDMDDERLKDLFGKFGP 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +V+ D E+G+S+GFGFV+ + A+ ++G+ L+G+ I V A+ + R +
Sbjct: 217 ALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 175 (66.7 bits), Expect = 9.0e-11, P = 9.0e-11
Identities = 55/181 (30%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G I++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+GFV ++ AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 218 (81.8 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 51/172 (29%), Positives = 94/172 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L + NL Y E L +FEKA +++ + + +S+G+ F+ ++ E+A++A+
Sbjct: 488 LVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSC 543
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
++ +I+GR + + PRG+ R+ +P ++V L + L++ F G V
Sbjct: 544 NKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFD--GSV- 596
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
AR+V DRETG S+GFGFV +SE + A A++ +DG + ++ A+ +
Sbjct: 597 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 648
Score = 155 (59.6 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 46/180 (25%), Positives = 86/180 (47%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
DA+ L NLPY V ++L +FE A + + + +S+G ++ T +AEK
Sbjct: 391 DARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAEKT 445
Query: 218 VEMFHRYDIDGRLLTVNKAAPRG-TQPERAPR--VFEPGFRIYV-GNLPWEVDNARLEQV 273
E +IDGR +++ +G Q R + + + V NL + L++V
Sbjct: 446 FEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEV 505
Query: 274 FSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
F E + V + G+S+G+ F+ +S + +A+ + + + ++GRAIR+ + R
Sbjct: 506 F-EKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 561
Score = 132 (51.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 41/178 (23%), Positives = 81/178 (45%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFVGNL ++ + +L V+ R +R FG+V + E+ EKA+E+
Sbjct: 309 LFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVR-IGMTRKFGYVDFESAEDLEKALELT 367
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ G + + K + ++ ER R + NLP++V L++VF + ++
Sbjct: 368 G-LKVFGNEIKLEKPKGKDSKKERDART------LLAKNLPYKVTQDELKEVFEDAAEI- 419
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 339
R+V + G+S+G ++ +E + G +DGR+I + ++ + +
Sbjct: 420 --RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDY 473
Score = 126 (49.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFV L D E L F+ G+V A ++ +RET S+GFGFV ++ E+A+ A E
Sbjct: 574 LFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630
Query: 222 HRYDIDGRLLTVNKAAPRG 240
+IDG +T++ A P+G
Sbjct: 631 EDGEIDGNKVTLDWAKPKG 649
Score = 38 (18.4 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 82 DQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVE 134
D++ED+D I DE + + D E + E+ +E
Sbjct: 160 DEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAME 212
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 223 (83.6 bits), Expect = 2.6e-18, P = 2.6e-18
Identities = 53/174 (30%), Positives = 87/174 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L +E+ G + V+ + + RSRGFGFVT S++ E + A+
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ IDGR++ +A R + P +++VG + + + L F E+GK+
Sbjct: 82 -RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 138
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++ DR++G+ RGFGFVT + D I ++G V A RQ
Sbjct: 139 DTIEIITDRQSGKKRGFGFVTFDDHDPV-DKIFLQKYHTINGHNAEVRKALSRQ 191
Score = 134 (52.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 241 TQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 299
T P ER R E ++++G L +E L + + GK+ + V+ D + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 300 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
VT SS E++ A+AA ++DGR + A R+
Sbjct: 67 VTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVARE 100
Score = 124 (48.7 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA-VE 219
KLFVG + D + L FE+ G ++ E+I +R++ + RGFGFVT + +K ++
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQ 172
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPE 244
+H I+G V KA R E
Sbjct: 173 KYHT--INGHNAEVRKALSRQEMQE 195
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 231 (86.4 bits), Expect = 2.6e-18, P = 2.6e-18
Identities = 59/181 (32%), Positives = 95/181 (52%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
++ LFV NL + + L F G ++ A V+ N ET +RG+GFVT S +E+A++A
Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAA 63
Query: 219 EMFHRYDIDGRLLTVNKAAPR-----GTQPERAPR--VFEPGF-RIYVGNLPWEVDNAR- 269
+ + GR+L ++ A PR T +A + + + R+ + NLPW + +
Sbjct: 64 KELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQH 123
Query: 270 LEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
LE FS+ GKV ++ + GR GF FV M +A+ +L+G +DGR I V+
Sbjct: 124 LEPHFSKFGKVREIKIP-TKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDW 182
Query: 330 A 330
A
Sbjct: 183 A 183
Score = 127 (49.8 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 256 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315
++V NL ++ L FS+ G + +A VV + ETG +RG+GFVT S + A L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 316 DGQNLDGRAIRVNVAEDRQR 335
+ L GR +R++ A R+R
Sbjct: 67 KNKKLHGRILRLDFATPRKR 86
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 229 (85.7 bits), Expect = 2.7e-18, P = 2.7e-18
Identities = 65/184 (35%), Positives = 97/184 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
++V NL V + L LF + GTV + V+ RSRGFGFV E A+KA+E
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVS-SVVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVF------EPGFR---IYVGNLPWEVDNARLEQ 272
+ + L V KA + + E + F +P R +YV NL ++ RL +
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLRE 322
Query: 273 VFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332
+F +G++V+A+V+ E GRS+GFGFV S+ E A L+G +DG+ I V VAE
Sbjct: 323 IFGCYGQIVSAKVMC-HENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAER 381
Query: 333 RQRR 336
++ R
Sbjct: 382 KEDR 385
Score = 172 (65.6 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 54/177 (30%), Positives = 82/177 (46%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+V NL + S L +F G++ +V+ E +S+GFGFV T + A A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARS 169
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGK 279
H + G+ L V K + + A + +YV NL V + L +FS++G
Sbjct: 170 ALHGSMVYGKKLFVAKFINKDERAAMAGN--QDSTNVYVKNLIETVTDDCLHTLFSQYGT 227
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
V + V+ D GRSRGFGFV + A+ +L G L + + V A + R
Sbjct: 228 VSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDER 283
Score = 153 (58.9 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 47/178 (26%), Positives = 84/178 (47%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L+VG+L DV + L F V + N T +S + ++ + A A+
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKV 280
+ D+ G+ + + + R R R GF +YV NL + ++ LE++F G +
Sbjct: 83 NHSDLKGKAMRI-MWSQRDLAYRRRTRT---GFANLYVKNLDSSITSSCLERMFCPFGSI 138
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +VV E G+S+GFGFV +E A +AL G + G+ + V ++ R++
Sbjct: 139 LSCKVV--EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAA 194
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 55/174 (31%), Positives = 87/174 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG L + L FE+ G + V+ N++ RSR FGFVT S+ +EA+ A+
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DG + + +A R + P +I++G L +++ L FS+ G V
Sbjct: 71 -RPHILDGNNVELKRAVAR--EDAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAV 127
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
A V+ D+ETG+ RGFGFV + A+ L ++G + V A +Q
Sbjct: 128 EKAEVITDKETGKKRGFGFVYFEDNDSADKAVV-LKFHMINGHKVEVKKALTKQ 180
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 227 (85.0 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 59/186 (31%), Positives = 94/186 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G + +D D E+L F G V A ++ +R T R+RGFGF+ + +E+ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 221 FHRYDIDGRLLTVNKAAPRGTQP--ER--AP-RVFEP----GFR---IYVGNLPWEVDNA 268
++ IDGR + KA PR Q +R +P + P G R I+VG LP +
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEE 124
Query: 269 RLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328
+ F + G + + V+YD T R RGFGF+T S+ + D + L+G+ + V
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAV-DRVLHKTFHELNGKLVEVK 183
Query: 329 VAEDRQ 334
A ++
Sbjct: 184 RAVPKE 189
Score = 148 (57.2 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 28/84 (33%), Positives = 50/84 (59%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV-E 219
K+FVG LP + E+ F++ GT+ V+Y+ T R RGFGF+T + + ++ + +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQP 243
FH +++G+L+ V +A P+ P
Sbjct: 171 TFH--ELNGKLVEVKRAVPKEISP 192
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 223 (83.6 bits), Expect = 3.1e-18, P = 3.1e-18
Identities = 56/173 (32%), Positives = 95/173 (54%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA ++VG L + E L LF +AG V V +R T+ + +GF+ + E+A+ A+
Sbjct: 24 DATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAI 83
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
++ + + G+ + VNKA+ Q +++ + G +++GNL +VD L FS G
Sbjct: 84 KVLNMIKLHGKPIRVNKAS----QDKKS---LDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
Query: 279 KVV-NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
+ N +++ D +TG SRGFGF++ S + AI ++ GQ L R I V+ A
Sbjct: 137 VIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
Score = 125 (49.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 29/87 (33%), Positives = 48/87 (55%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEI-AEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
A LF+GNL DVD + L F G + +++ + +T SRGFGF++ + E ++ A+
Sbjct: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPER 245
E + R +TV+ A + T+ ER
Sbjct: 172 ESMTGQYLSNRQITVSYAYKKDTKGER 198
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 256 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315
+YVG L ++ L ++F + G VVN V DR T + +GF+ SE + + AI L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 316 DGQNLDGRAIRVNVA-EDRQ 334
+ L G+ IRVN A +D++
Sbjct: 87 NMIKLHGKPIRVNKASQDKK 106
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 56/174 (32%), Positives = 86/174 (49%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L L FE GT+ V+ N +T RSR FGFVT S VEEA+ A+
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DG + + +A R + P +++VG L +V L + FS+ G V
Sbjct: 68 -SPHAVDGNTVELKRAVSR--EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAV 124
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
A ++ D+++G+ RGFGFV S + D A + + G + V A ++
Sbjct: 125 EKAEIIADKQSGKKRGFGFVYFQSH-DAADKAAVVKFHPIQGHRVEVKKAVPKE 177
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 56/178 (31%), Positives = 87/178 (48%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KL +G L ++ + L FEK GT+ V+ + +T RSRGFGFVT S VEE + AV
Sbjct: 9 KLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAV-C 67
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + P +I+VG + + + L F ++GK+
Sbjct: 68 ARPHKVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKI 125
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
V+ D ++G+ RGF FVT + D I ++G V A +Q S
Sbjct: 126 ETIEVMEDSQSGKKRGFAFVTFDDHDTV-DKIVDQKYHIINGHNCEVKKALSKQEMQS 182
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 224 (83.9 bits), Expect = 3.7e-18, P = 3.7e-18
Identities = 59/187 (31%), Positives = 89/187 (47%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG L + E L F + G V ++ ++ T++SRGFGFV V
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 59
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERA-PRV-FEPGFR--------IYVGNLPWEVDNARL 270
+ +DGR + PRG QPER P+ ++ G R I+VG +P L
Sbjct: 60 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 119
Query: 271 EQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
+ F + G V ++YD E R RGFGF+T E ++ A+ + ++ G+ + V A
Sbjct: 120 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 178
Query: 331 EDRQRRS 337
E R +S
Sbjct: 179 EPRDSKS 185
Score = 157 (60.3 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 35/93 (37%), Positives = 55/93 (59%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG +P++ +L F+K G V +IY+ E R RGFGF+T + ++AV M
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 163
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 253
H +DI G+ + V +A PR ++ + AP +PG
Sbjct: 164 -HFHDIMGKKVEVKRAEPRDSKSQ-APG--QPG 192
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 222 (83.2 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 51/177 (28%), Positives = 93/177 (52%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+F+G L D + F K G + + ++ +R T + RGFGF+T + +K +E
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
H I+G+ + + + P+G ++ + +I+VG +P V L+ F+++G V
Sbjct: 80 THV--INGKQVEIKRTIPKGAGGNQSKDIKTK--KIFVGGIPSTVTEDELKDFFAKYGNV 135
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
V +V+ D ET RSRGFGFV SE +++ ++ G +D +V + + ++S
Sbjct: 136 VEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK--GNMIDMADTQVEIKKAEPKKS 190
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 229 (85.7 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 57/188 (30%), Positives = 103/188 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG----------FRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE +YV NL +D+ RL
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSSF 339
++ R ++
Sbjct: 370 RKEERQAY 377
Score = 197 (74.4 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 50/179 (27%), Positives = 96/179 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL ++++ L G + V+ + + S+G+GFV T E AE+A++
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFE-PGFRIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++GR + V + R + E R E P +Y+ N ++D+ RL+ +F + G
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN--VYIKNFGEDMDDERLKDLFGKFGP 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +V+ D E+G+S+GFGFV+ + A+ ++G+ L+G+ I V A+ + R +
Sbjct: 217 ALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 156 (60.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 52/181 (28%), Positives = 84/181 (46%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + + + T S + +V ++AE A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G I+V NL ++N L S
Sbjct: 71 TMN-FD-------VIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ VV D E G S+G+GFV + AI ++G L+GR + V + R+ R
Sbjct: 123 GNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 224 (83.9 bits), Expect = 4.1e-18, P = 4.1e-18
Identities = 59/187 (31%), Positives = 89/187 (47%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG L + E L F + G V ++ ++ T++SRGFGFV V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 69
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERA-PRV-FEPGFR--------IYVGNLPWEVDNARL 270
+ +DGR + PRG QPER P+ ++ G R I+VG +P L
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 271 EQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
+ F + G V ++YD E R RGFGF+T E ++ A+ + ++ G+ + V A
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 188
Query: 331 EDRQRRS 337
E R +S
Sbjct: 189 EPRDSKS 195
Score = 157 (60.3 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 35/93 (37%), Positives = 55/93 (59%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG +P++ +L F+K G V +IY+ E R RGFGF+T + ++AV M
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 253
H +DI G+ + V +A PR ++ + AP +PG
Sbjct: 174 -HFHDIMGKKVEVKRAEPRDSKSQ-APG--QPG 202
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 224 (83.9 bits), Expect = 4.2e-18, P = 4.2e-18
Identities = 59/187 (31%), Positives = 89/187 (47%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG L + E L F + G V ++ ++ T++SRGFGFV V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 69
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERA-PRV-FEPGFR--------IYVGNLPWEVDNARL 270
+ +DGR + PRG QPER P+ ++ G R I+VG +P L
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 271 EQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
+ F + G V ++YD E R RGFGF+T E ++ A+ + ++ G+ + V A
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 188
Query: 331 EDRQRRS 337
E R +S
Sbjct: 189 EPRDSKS 195
Score = 157 (60.3 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 35/93 (37%), Positives = 55/93 (59%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG +P++ +L F+K G V +IY+ E R RGFGF+T + ++AV M
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 253
H +DI G+ + V +A PR ++ + AP +PG
Sbjct: 174 -HFHDIMGKKVEVKRAEPRDSKSQ-APG--QPG 202
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 224 (83.9 bits), Expect = 4.2e-18, P = 4.2e-18
Identities = 59/187 (31%), Positives = 89/187 (47%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG L + E L F + G V ++ ++ T++SRGFGFV V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 69
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERA-PRV-FEPGFR--------IYVGNLPWEVDNARL 270
+ +DGR + PRG QPER P+ ++ G R I+VG +P L
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 271 EQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
+ F + G V ++YD E R RGFGF+T E ++ A+ + ++ G+ + V A
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 188
Query: 331 EDRQRRS 337
E R +S
Sbjct: 189 EPRDSKS 195
Score = 157 (60.3 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 35/93 (37%), Positives = 55/93 (59%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG +P++ +L F+K G V +IY+ E R RGFGF+T + ++AV M
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 253
H +DI G+ + V +A PR ++ + AP +PG
Sbjct: 174 -HFHDIMGKKVEVKRAEPRDSKSQ-APG--QPG 202
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 224 (83.9 bits), Expect = 4.2e-18, P = 4.2e-18
Identities = 57/169 (33%), Positives = 89/169 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L+VGNL V + +A LF + G+V +VI++ D + FV S +A +A++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP---YAFVEFSDHGQASQALQTM 104
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
++ + R + VN A G Q + F ++VG+L EVDN +L + F G V
Sbjct: 105 NKRLLLDREMKVNWAVEPGQQQSKIDTTRH--FHVFVGDLSSEVDNQKLREAFQPFGDVS 162
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
+A+V+ D T +S+G+GFV+ E AI ++GQ L R IR N A
Sbjct: 163 DAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 211
Score = 173 (66.0 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 47/177 (26%), Positives = 86/177 (48%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FVG+L +VD++KL F+ G V A+VI + T +S+G+GFV+ EEAE+A+E
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF------------RIYVGNLPWEVDNAR 269
+ + R + N A + E+ E + +YVGN+ +
Sbjct: 197 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDE 255
Query: 270 LEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 326
+ Q F+ G++ R+ + +G+ FV ++ AI ++ Q++ G+ +R
Sbjct: 256 IRQGFASFGRITEVRIF------KMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVR 306
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 226 (84.6 bits), Expect = 4.3e-18, P = 4.3e-18
Identities = 57/176 (32%), Positives = 92/176 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L+VG L V + L +FE G V+ ++I ++ + +GFV A++A++
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNA-KGYNYGFVEYDDPGAADRAMQTL 145
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ + + VN A T + F I+VG+L EV++ L Q FS G V
Sbjct: 146 NGRRVHQSEIRVNWAYQAATSATKEDT--SNHFHIFVGDLSNEVNDEVLTQAFSVFGSVS 203
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
ARV++D +TGRSRG+GFV ++ A++++DG+ L RAIR N A + + S
Sbjct: 204 EARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQPS 259
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 222 (83.2 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ ++ LF G +E +++ ++ T +S G+GFV S +A+K
Sbjct: 36 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 95
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + +EQ+FS+
Sbjct: 96 AINTLNGLKLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMSQKEMEQLFSQ 147
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G A + V
Sbjct: 148 YGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200
Score = 149 (57.5 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL E D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ +Q ++
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHKA 367
Score = 115 (45.5 bits), Expect = 0.00036, P = 0.00036
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL + D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 346 NGYRLGERVLQVS 358
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 222 (83.2 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ ++ LF G +E +++ ++ T +S G+GFV S +A+K
Sbjct: 36 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 95
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + +EQ+FS+
Sbjct: 96 AINTLNGLKLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMSQKEMEQLFSQ 147
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G A + V
Sbjct: 148 YGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200
Score = 149 (57.5 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL E D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ +Q ++
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHKA 367
Score = 115 (45.5 bits), Expect = 0.00036, P = 0.00036
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL + D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 346 NGYRLGERVLQVS 358
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 223 (83.6 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 51/162 (31%), Positives = 85/162 (52%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP + E+L LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 64 DSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEK 123
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 124 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 175
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ 318
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ
Sbjct: 176 YGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 143 (55.4 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 304 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 363
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ ++
Sbjct: 364 ASLNGYRLGDRVLQVSFKTNKTHKA 388
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L +F G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 367 NGYRLGDRVLQVS 379
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 223 (83.6 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 50/174 (28%), Positives = 90/174 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+F+G L + + L F K G + V+ + T RSRGFGF+T + V +K +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQ 81
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
H +++D + + A PR QP+ R +I+VG L ++Q F + GKV
Sbjct: 82 PH-HELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSASTVVEDVKQYFEQFGKV 136
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
+A +++D+ T R RGFGFVT +E ++ + + + ++ + + A+ ++
Sbjct: 137 EDAMLMFDKTTNRHRGFGFVTFENE-DIVEKVCEIHFHEINNKMVECKKAQPKE 189
Score = 150 (57.9 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 43/140 (30%), Positives = 69/140 (49%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG L E + FE+ G VE A +++++ T+R RGFGFVT + EK E+
Sbjct: 111 KIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCEI 170
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
H ++I+ +++ KA P+ +F PG R +LP+ +D L + +
Sbjct: 171 -HFHEINNKMVECKKAQPKEV-------MFPPGTRGRARSLPYTMDAFMLGMGMLSYPNI 222
Query: 281 VNARVVYDRE-TGRSRGFGF 299
V Y R TG S + +
Sbjct: 223 V---ATYGRGYTGFSPSYSY 239
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 221 (82.9 bits), Expect = 4.5e-18, P = 4.5e-18
Identities = 53/174 (30%), Positives = 86/174 (49%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L +E+ G + V+ + + RSRGFGFVT S++ E + A+
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ IDGR++ +A R + P +++VG + + + L F E+GKV
Sbjct: 82 -RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKV 138
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++ DR++G+ RGFGF T + D I ++G V A RQ
Sbjct: 139 DTIEIITDRQSGKKRGFGFFTFDDHDPV-DKIVLQKYHTINGHNAEVRKALSRQ 191
Score = 134 (52.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 241 TQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 299
T P ER R E ++++G L +E L + + GK+ + V+ D + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 300 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
VT SS E++ A+AA ++DGR + A R+
Sbjct: 67 VTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVARE 100
Score = 123 (48.4 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 30/85 (35%), Positives = 44/85 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV-E 219
KLFVG + D + L FE+ G V+ E+I +R++ + RGFGF T + +K V +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQ 172
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPE 244
+H I+G V KA R E
Sbjct: 173 KYHT--INGHNAEVRKALSRQEMQE 195
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 50/174 (28%), Positives = 89/174 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+F+G L + + L F K G + V+ + T RSRGFGFVT + +K +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
H +++D + + A PR QP+ R +I+VG L ++Q F + GKV
Sbjct: 82 PH-HELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSANTVVEDVKQYFEQFGKV 136
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
+A +++D+ T R RGFGFVT +E ++ + + + ++ + + A+ ++
Sbjct: 137 EDAMLMFDKTTNRHRGFGFVTFENE-DVVEKVCEIHFHEINNKMVECKKAQPKE 189
Score = 149 (57.5 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 36/106 (33%), Positives = 58/106 (54%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG L + E + FE+ G VE A +++++ T+R RGFGFVT + EK E+
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVD 266
H ++I+ +++ KA P+ +F PG R LP+ +D
Sbjct: 171 -HFHEINNKMVECKKAQPKEV-------MFPPGTRGRARGLPYTMD 208
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 227 (85.0 bits), Expect = 4.7e-18, P = 4.7e-18
Identities = 56/187 (29%), Positives = 99/187 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N +VD E L LF + G +V+ + +S+GFGFV+ E+A KAVE
Sbjct: 95 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEM 153
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +I G+++ V +A + + R FE G +Y+ NL +D+ +L
Sbjct: 154 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 213
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 214 KEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 271
Query: 332 DRQRRSS 338
++ R +
Sbjct: 272 RKEERKA 278
Score = 208 (78.3 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 48/177 (27%), Positives = 93/177 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+ FV T E A+KA+E
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 60
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ ++ R + V + R + + +Y+ N EVD+ L+++FS+ GK +
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 120
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+ +V+ D G+S+GFGFV+ + N A+ ++G+ + G+ I V A+ + R +
Sbjct: 121 SVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 176
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 228 (85.3 bits), Expect = 5.0e-18, P = 5.0e-18
Identities = 57/187 (30%), Positives = 103/187 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D EKL +F K G V+ + ++ +S+GFGFV+ E+A++AV+
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A +G + R FE G +YV NL +D+ RL
Sbjct: 252 NGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERQA 376
Score = 205 (77.2 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 48/179 (26%), Positives = 99/179 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A+E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F +Y+ N ++D+ +L+++F ++G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAEMGARAKE--FTNVYIKNFGEDMDDEKLKEIFCKYGP 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ RV+ D ++G+S+GFGFV+ + A+ ++G+ ++G+ + V A+ + R +
Sbjct: 217 ALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQT 274
Score = 175 (66.7 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 53/180 (29%), Positives = 87/180 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ I GR + + + +R P + + G I++ NL +DN L FS G
Sbjct: 71 TMNFDVIKGRPVRIMWS-------QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+++ +VV D E G S+G+GFV + AI ++G L+ R + V + R+ R +
Sbjct: 124 NILSCKVVCD-ENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 221 (82.9 bits), Expect = 5.7e-18, P = 5.7e-18
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ ++ LF G +E +++ ++ T +S G+GFV S +A+K
Sbjct: 36 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 95
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + +EQ+FS+
Sbjct: 96 AINTLNGLKLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMSQKEMEQLFSQ 147
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G A + V
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200
Score = 149 (57.5 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL E D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ +Q ++
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHKA 367
Score = 115 (45.5 bits), Expect = 0.00036, P = 0.00036
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL + D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 346 NGYRLGERVLQVS 358
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 221 (82.9 bits), Expect = 5.7e-18, P = 5.7e-18
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ ++ LF G +E +++ ++ T +S G+GFV S +A+K
Sbjct: 36 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 95
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + +EQ+FS+
Sbjct: 96 AINTLNGLKLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMSQKEMEQLFSQ 147
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G A + V
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200
Score = 149 (57.5 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL E D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ +Q ++
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHKA 367
Score = 115 (45.5 bits), Expect = 0.00036, P = 0.00036
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL + D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 346 NGYRLGERVLQVS 358
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 221 (82.9 bits), Expect = 5.7e-18, P = 5.7e-18
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ ++ LF G +E +++ ++ T +S G+GFV S +A+K
Sbjct: 36 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 95
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + +EQ+FS+
Sbjct: 96 AINTLNGLKLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMSQKEMEQLFSQ 147
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G A + V
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200
Score = 149 (57.5 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL E D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ +Q ++
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHKA 367
Score = 115 (45.5 bits), Expect = 0.00036, P = 0.00036
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL + D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 346 NGYRLGERVLQVS 358
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 221 (82.9 bits), Expect = 5.7e-18, P = 5.7e-18
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ ++ LF G +E +++ ++ T +S G+GFV S +A+K
Sbjct: 36 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 95
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + +EQ+FS+
Sbjct: 96 AINTLNGLKLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMSQKEMEQLFSQ 147
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G A + V
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200
Score = 149 (57.5 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL E D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 284 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 343
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ +Q ++
Sbjct: 344 ASLNGYRLGERVLQVSFKTSKQHKA 368
Score = 115 (45.5 bits), Expect = 0.00036, P = 0.00036
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL + D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 347 NGYRLGERVLQVS 359
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 51/172 (29%), Positives = 94/172 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L + NL Y E L +FEKA +++ + + +S+G+ F+ ++ E+A++A+
Sbjct: 113 LVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSC 168
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
++ +I+GR + + PRG+ R+ +P ++V L + L++ F G V
Sbjct: 169 NKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFD--GSV- 221
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
AR+V DRETG S+GFGFV +SE + A A++ +DG + ++ A+ +
Sbjct: 222 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 273
Score = 126 (49.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFV L D E L F+ G+V A ++ +RET S+GFGFV ++ E+A+ A E
Sbjct: 199 LFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 255
Query: 222 HRYDIDGRLLTVNKAAPRG 240
+IDG +T++ A P+G
Sbjct: 256 EDGEIDGNKVTLDWAKPKG 274
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 227 (85.0 bits), Expect = 6.0e-18, P = 6.0e-18
Identities = 56/187 (29%), Positives = 99/187 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N +VD E L LF + G +V+ + +S+GFGFV+ E+A KAVE
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +I G+++ V +A + + R FE G +Y+ NL +D+ +L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 208 (78.3 bits), Expect = 6.7e-16, P = 6.7e-16
Identities = 48/177 (27%), Positives = 93/177 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+ FV T E A+KA+E
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ ++ R + V + R + + +Y+ N EVD+ L+++FS+ GK +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+ +V+ D G+S+GFGFV+ + N A+ ++G+ + G+ I V A+ + R +
Sbjct: 219 SVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Score = 172 (65.6 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 54/181 (29%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG V V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G +++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+ FV ++ + AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 227 (85.0 bits), Expect = 6.3e-18, P = 6.3e-18
Identities = 57/187 (30%), Positives = 99/187 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D ++L +F G +V+ + + RSRGFGFV EEA+KAV
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +++GR++ V +A R + R FE G +YV NL +D+ RL
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS +G + + +V+ E G S+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 211 (79.3 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 53/177 (29%), Positives = 95/177 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + SRG+GFV T E A +A++
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158
Query: 222 HRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E +V E F +Y+ N ++D+ RL+++FS G
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVME--FTNVYIKNFGEDMDDKRLKEIFSAFGN 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
++ +V+ D +GRSRGFGFV + E A+ ++G+ ++GR + V A+ R R
Sbjct: 217 TLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIER 272
Score = 180 (68.4 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 52/178 (29%), Positives = 88/178 (49%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L++G+L DV L F AG + V + T RS G+ ++ +AE+A++
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ I GR + + + +R P + + G +++ NL +DN L FS G
Sbjct: 71 TMNFEVIKGRPIRIMWS-------QRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG 123
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
+++ +VV D E G SRG+GFV ++ N AI ++G L+ R + V + R+ R
Sbjct: 124 DILSCKVVCD-EYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRER 179
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 227 (85.0 bits), Expect = 6.3e-18, P = 6.3e-18
Identities = 56/187 (29%), Positives = 100/187 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N +VD E L LF + G +V+ + + +S+GFGFV+ E+A KAVE
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +I G+++ V +A + + R FE G +Y+ NL +D+ +L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 211 (79.3 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 48/177 (27%), Positives = 94/177 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+ FV T E A+KA+E
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ ++ R + V + R + + +Y+ N EVD+ L+++FS+ GK +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+ +V+ D +G+S+GFGFV+ + N A+ ++G+ + G+ I V A+ + R +
Sbjct: 219 SVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Score = 172 (65.6 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 54/181 (29%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG V V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G +++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+ FV ++ + AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 227 (85.0 bits), Expect = 6.3e-18, P = 6.3e-18
Identities = 56/187 (29%), Positives = 100/187 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N +VD E L LF + G +V+ + + +S+GFGFV+ E+A KAVE
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +I G+++ V +A + + R FE G +Y+ NL +D+ +L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 210 (79.0 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 48/177 (27%), Positives = 94/177 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+ FV T E A+KA+E
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ ++ R + V + R + + +Y+ N EVD+ L+++FS+ GK +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+ +V+ D +G+S+GFGFV+ + N A+ ++G+ + G+ I V A+ + R +
Sbjct: 219 SVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Score = 172 (65.6 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 54/181 (29%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG V V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G +++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+ FV ++ + AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 220 (82.5 bits), Expect = 6.5e-18, P = 6.5e-18
Identities = 54/184 (29%), Positives = 95/184 (51%)
Query: 159 DAKL-FVGN-LPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K + N LP ++ E+L LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 36 DSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 147
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPS 207
Query: 335 RRSS 338
++++
Sbjct: 208 QKTN 211
Score = 143 (55.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ ++
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHKA 359
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L +F G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 338 NGYRLGDRVLQVS 350
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 220 (82.5 bits), Expect = 6.5e-18, P = 6.5e-18
Identities = 54/184 (29%), Positives = 95/184 (51%)
Query: 159 DAKL-FVGN-LPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K + N LP ++ E+L LF G +E +++ ++ T +S G+GFV ++AEK
Sbjct: 36 DSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P A +YV LP + LEQ+FS+
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQ 147
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDRQ 334
+G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPS 207
Query: 335 RRSS 338
++++
Sbjct: 208 QKTN 211
Score = 143 (55.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ ++
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHKA 359
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L +F G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 338 NGYRLGDRVLQVS 350
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 227 (85.0 bits), Expect = 6.6e-18, P = 6.6e-18
Identities = 56/187 (29%), Positives = 99/187 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N +VD E L LF + G +V+ + +S+GFGFV+ E+A KAVE
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +I G+++ V +A + + R FE G +Y+ NL +D+ +L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 208 (78.3 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 48/177 (27%), Positives = 93/177 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+ FV T E A+KA+E
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ ++ R + V + R + + +Y+ N EVD+ L+++FS+ GK +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+ +V+ D G+S+GFGFV+ + N A+ ++G+ + G+ I V A+ + R +
Sbjct: 219 SVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Score = 172 (65.6 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 54/181 (29%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG V V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G +++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+ FV ++ + AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 219 (82.2 bits), Expect = 6.7e-18, P = 6.7e-18
Identities = 50/174 (28%), Positives = 89/174 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+F+G L + + L F K G + V+ + T RSRGFGFVT + +K +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
H +++D + + A PR QP+ R +I+VG L ++Q F + GKV
Sbjct: 82 PH-HELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSANTVVEDVKQYFEQFGKV 136
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
+A +++D+ T R RGFGFVT +E ++ + + + ++ + + A+ ++
Sbjct: 137 EDAMLMFDKTTNRHRGFGFVTFENE-DVVEKVCEIHFHEINNKMVECKKAQPKE 189
Score = 149 (57.5 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 36/106 (33%), Positives = 58/106 (54%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG L + E + FE+ G VE A +++++ T+R RGFGFVT + EK E+
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVD 266
H ++I+ +++ KA P+ +F PG R LP+ +D
Sbjct: 171 -HFHEINNKMVECKKAQPKEV-------MFPPGTRGRARGLPYTMD 208
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 224 (83.9 bits), Expect = 6.9e-18, P = 6.9e-18
Identities = 54/173 (31%), Positives = 90/173 (52%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K F+G L +D E L F+K G + ++ + T RSRGFGF+T + + ++
Sbjct: 163 KCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALLK- 221
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
R+ +DG+L+ +A + Q E+ ++F VG + V + FS+ GK+
Sbjct: 222 -DRHVLDGKLIDPKRAISKEDQ-EKVGKIF-------VGGIDPMVTEEEFDNFFSQFGKI 272
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
++ +++ D++TGRSRGFGFVT S + D + L G+A+ V A R
Sbjct: 273 IDCQLMIDKDTGRSRGFGFVTYDSPAAV-DKVCVNKYLTLKGKAMEVKRAAPR 324
Score = 125 (49.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 311
P + ++G L W+ L F ++G +V+ ++ D TGRSRGFGF+T + DA
Sbjct: 160 PSRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSV-DA 218
Query: 312 IAALDGQNLDGRAI---RVNVAEDRQR 335
+ D LDG+ I R ED+++
Sbjct: 219 LLK-DRHVLDGKLIDPKRAISKEDQEK 244
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG + V E+ F + G + +++ +++T RSRGFGFVT + +K
Sbjct: 247 KIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVC-- 304
Query: 221 FHRY-DIDGRLLTVNKAAPRG 240
++Y + G+ + V +AAPRG
Sbjct: 305 VNKYLTLKGKAMEVKRAAPRG 325
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 222 (83.2 bits), Expect = 7.1e-18, P = 7.1e-18
Identities = 50/174 (28%), Positives = 89/174 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+F+G L + + L F K G + V+ + T RSRGFGFVT + +K +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQ 81
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
H +++D + + A PR QP+ R +I+VG L ++Q F + GKV
Sbjct: 82 PH-HELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSANTVVEDVKQYFEQFGKV 136
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
+A +++D+ T R RGFGFVT +E ++ + + + ++ + + A+ ++
Sbjct: 137 EDAMLMFDKTTNRHRGFGFVTFENE-DVVEKVCEIHFHEINNKMVECKKAQPKE 189
Score = 149 (57.5 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 36/106 (33%), Positives = 58/106 (54%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG L + E + FE+ G VE A +++++ T+R RGFGFVT + EK E+
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVD 266
H ++I+ +++ KA P+ +F PG R LP+ +D
Sbjct: 171 -HFHEINNKMVECKKAQPKEV-------MFPPGTRGRARGLPYTMD 208
Score = 127 (49.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 310
+PG ++++G L W+ L FS+ G++ V+ D T RSRGFGFVT + + D
Sbjct: 19 DPG-KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASV-D 76
Query: 311 AIAALDGQNLDGRAIRVNVAEDRQ 334
+ A LD + I VA R+
Sbjct: 77 KVLAQPHHELDSKTIDPKVAFPRR 100
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 220 (82.5 bits), Expect = 7.1e-18, P = 7.1e-18
Identities = 51/172 (29%), Positives = 94/172 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L + NL Y E L +FEKA +++ + + +S+G+ F+ ++ E+A++A+
Sbjct: 142 LVLSNLAYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSC 197
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
++ +I+GR + + PRG+ R+ +P ++V L E L++ F G +
Sbjct: 198 NKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEETTEETLKESFD--GSI- 250
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
AR+V DRETG S+GFGFV +SE + A A++ +DG + ++ A+ +
Sbjct: 251 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 302
Score = 157 (60.3 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 50/180 (27%), Positives = 89/180 (49%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
DA+ L NLPY V ++L +FE A VEI V + +S+G ++ T +AEK
Sbjct: 45 DARTLLAKNLPYKVTQDELKEVFEDA--VEIRLV---SKDGKSKGIAYIEFKTEADAEKT 99
Query: 218 VEMFHRYDIDGRLLTVNKAAPRG-TQPERAPR--VFEPGFRIYV-GNLPWEVDNARLEQV 273
+E +IDGR +++ +G Q R + + + V NL + L++V
Sbjct: 100 LEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEV 159
Query: 274 FSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
F E + V + G+S+G+ F+ +S + +A+ + + + ++GRAIR+ + R
Sbjct: 160 F-EKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 215
Score = 122 (48.0 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 33/139 (23%), Positives = 66/139 (47%)
Query: 201 RGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGN 260
R FG+V + E+ EKA+E+ + G + + K + ++ +R R + N
Sbjct: 1 RKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKKDRDART------LLAKN 53
Query: 261 LPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL 320
LP++V L++VF + V R+V + G+S+G ++ +E + + G +
Sbjct: 54 LPYKVTQDELKEVFED---AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 108
Query: 321 DGRAIRVNVAEDRQRRSSF 339
DGR+I + ++ + F
Sbjct: 109 DGRSISLYYTGEKGQNQDF 127
Score = 121 (47.7 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFV L + E L F+ G++ A ++ +RET S+GFGFV ++ E+A+ A E
Sbjct: 228 LFVKGLSEETTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 284
Query: 222 HRYDIDGRLLTVNKAAPRG 240
+IDG +T++ A P+G
Sbjct: 285 EDGEIDGNKVTLDWAKPKG 303
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 39/85 (45%), Positives = 59/85 (69%)
Query: 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314
++++G + + +D L + F+++G+VV+ RV+ DRETGRSRGFGFVT +S + AI A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 315 LDGQNLDGRAIRVNVAEDRQRRSSF 339
LDG++L GR ++VN A DR F
Sbjct: 101 LDGRDLHGRVVKVNYANDRTSGGGF 125
Score = 167 (63.8 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 35/80 (43%), Positives = 48/80 (60%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
+KLF+G + Y +D + L F K G V VI +RET RSRGFGFVT ++ E A A++
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 220 MFHRYDIDGRLLTVNKAAPR 239
D+ GR++ VN A R
Sbjct: 100 ALDGRDLHGRVVKVNYANDR 119
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 55/174 (31%), Positives = 86/174 (49%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L L FE GT+ V+ N +T RSR FGFVT S VEEA+ A+
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DG + + +A R + P +++VG L +V L + FS+ G V
Sbjct: 73 -SPHAVDGNTVELKRAVSR--EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTV 129
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
A ++ D+++G+ RGFGFV + + D A + + G + V A ++
Sbjct: 130 EKAEIIADKQSGKKRGFGFVYFQNH-DAADKAAVVKFHPIQGHRVEVKKAVPKE 182
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 55/174 (31%), Positives = 86/174 (49%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L L FE GT+ V+ N +T RSR FGFVT S VEEA+ A+
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DG + + +A R + P +++VG L +V L + FS+ G V
Sbjct: 68 -SPHAVDGNTVELKRAVSR--EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTV 124
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
A ++ D+++G+ RGFGFV + + D A + + G + V A ++
Sbjct: 125 EKAEIIADKQSGKKRGFGFVYFQNH-DAADKAAVVKFHPIQGHRVEVKKAVPKE 177
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 55/174 (31%), Positives = 86/174 (49%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L L FE GT+ V+ N +T RSR FGFVT S VEEA+ A+
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DG + + +A R + P +++VG L +V L + FS+ G V
Sbjct: 68 -SPHAVDGNTVELKRAVSR--EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTV 124
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
A ++ D+++G+ RGFGFV + + D A + + G + V A ++
Sbjct: 125 EKAEIIADKQSGKKRGFGFVYFQNH-DAADKAAVVKFHPIQGHRVEVKKAVPKE 177
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 55/174 (31%), Positives = 86/174 (49%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L L FE GT+ V+ N +T RSR FGFVT S VEEA+ A+
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DG + + +A R + P +++VG L +V L + FS+ G V
Sbjct: 73 -SPHAVDGNTVELKRAVSR--EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTV 129
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
A ++ D+++G+ RGFGFV + + D A + + G + V A ++
Sbjct: 130 EKAEIIADKQSGKKRGFGFVYFQNH-DAADKAAVVKFHPIQGHRVEVKKAVPKE 182
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 227 (85.0 bits), Expect = 7.6e-18, P = 7.6e-18
Identities = 56/187 (29%), Positives = 100/187 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N +VD E L LF + G +V+ + + +S+GFGFV+ E+A KAVE
Sbjct: 233 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEM 291
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +I G+++ V +A + + R FE G +Y+ NL +D+ +L
Sbjct: 292 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 351
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 352 KEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 409
Query: 332 DRQRRSS 338
++ R +
Sbjct: 410 RKEERKA 416
Score = 210 (79.0 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 48/177 (27%), Positives = 94/177 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+ FV T E A+KA+E
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 198
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ ++ R + V + R + + +Y+ N EVD+ L+++FS+ GK +
Sbjct: 199 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 258
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+ +V+ D +G+S+GFGFV+ + N A+ ++G+ + G+ I V A+ + R +
Sbjct: 259 SVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 314
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 224 (83.9 bits), Expect = 8.4e-18, P = 8.4e-18
Identities = 56/175 (32%), Positives = 87/175 (49%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L+VGNLP E + LF G I N + + F+ T E A+ A+
Sbjct: 81 LYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFNYAFIEYDTNEVADMALNTL 140
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ +D + VN A EP F I+VG+L EV++ L FS+ +
Sbjct: 141 NGRLVDDVEIKVNWAFQSAAIAGNPNNTEEPLFNIFVGDLSPEVNDEGLRNAFSKFESLK 200
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
A V++D +T RSRG+GFVT ++++ A+ ++G+ L GRAIR N A +Q++
Sbjct: 201 QAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQQQ 255
Score = 125 (49.1 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 28/84 (33%), Positives = 50/84 (59%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FVG+L +V+ E L F K +++ A V+++ +T RSRG+GFVT +AE A++
Sbjct: 175 IFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTM 234
Query: 222 HRYDIDGRLLTVNKAAPRGTQPER 245
+ + GR + N A+ + Q ++
Sbjct: 235 NGEWLCGRAIRCNWASHKQQQQQQ 258
Score = 58 (25.5 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 20/78 (25%), Positives = 34/78 (43%)
Query: 256 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315
+Y+GN+ L + G +V+ + + E RG FV + AI L
Sbjct: 414 VYLGNIAHFTQQQELIPLLQNFGFIVDFK--FHPE----RGCAFVKYDTHERAALAIIQL 467
Query: 316 DGQNLDGRAIRVNVAEDR 333
G NL+GR ++ ++R
Sbjct: 468 AGFNLNGRPLKCGWGKER 485
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 226 (84.6 bits), Expect = 8.4e-18, P = 8.4e-18
Identities = 56/187 (29%), Positives = 100/187 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N +VD E L LF + G +V+ + + +S+GFGFV+ E+A KAVE
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ +I G+++ V +A + + R FE G +Y+ NL +D+ +L
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 210 (79.0 bits), Expect = 4.4e-16, P = 4.4e-16
Identities = 48/177 (27%), Positives = 94/177 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+ FV T E A+KA+E
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ ++ R + V + R + + +Y+ N EVD+ L+++FS+ GK +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+ +V+ D +G+S+GFGFV+ + N A+ ++G+ + G+ I V A+ + R +
Sbjct: 219 SVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Score = 172 (65.6 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 54/181 (29%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG V V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G +++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+ FV ++ + AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 221 (82.9 bits), Expect = 8.9e-18, P = 8.9e-18
Identities = 58/186 (31%), Positives = 87/186 (46%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG L + E L F + G V ++ ++ T++SRGFGFV V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 69
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERA-PRVFEPGFR--------IYVGNLPWEVDNARLE 271
+ +DGR + PRG QPER P+ G R I+VG +P L
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWKGPRSDSSKSNKIFVGGIPHNCGETELR 129
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ F + G V ++YD E R RGFGF+T E ++ A+ + ++ G+ + V AE
Sbjct: 130 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 188
Query: 332 DRQRRS 337
R ++
Sbjct: 189 PRDSKN 194
Score = 157 (60.3 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 35/93 (37%), Positives = 55/93 (59%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG +P++ +L F+K G V +IY+ E R RGFGF+T + ++AV M
Sbjct: 113 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 172
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 253
H +DI G+ + V +A PR ++ +AP +PG
Sbjct: 173 -HFHDIMGKKVEVKRAEPRDSK-NQAPG--QPG 201
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 221 (82.9 bits), Expect = 8.9e-18, P = 8.9e-18
Identities = 58/187 (31%), Positives = 89/187 (47%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG L + E L F + G V ++ ++ T++SRGFGFV V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 69
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERA-PRV-FEPGFR--------IYVGNLPWEVDNARL 270
+ +DGR + PRG QPER P+ ++ G R I+VG +P L
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETEL 129
Query: 271 EQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
+ F + G V ++YD E R RGFGF+T E ++ A+ + ++ G+ + V A
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 188
Query: 331 EDRQRRS 337
E R ++
Sbjct: 189 EPRDSKN 195
Score = 157 (60.3 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 35/93 (37%), Positives = 55/93 (59%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG +P++ +L F+K G V +IY+ E R RGFGF+T + ++AV M
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 253
H +DI G+ + V +A PR ++ +AP +PG
Sbjct: 174 -HFHDIMGKKVEVKRAEPRDSK-NQAPG--QPG 202
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 221 (82.9 bits), Expect = 8.9e-18, P = 8.9e-18
Identities = 58/187 (31%), Positives = 89/187 (47%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG L + E L F + G V ++ ++ T++SRGFGFV V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 69
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERA-PRV-FEPGFR--------IYVGNLPWEVDNARL 270
+ +DGR + PRG QPER P+ ++ G R I+VG +P L
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETEL 129
Query: 271 EQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
+ F + G V ++YD E R RGFGF+T E ++ A+ + ++ G+ + V A
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 188
Query: 331 EDRQRRS 337
E R ++
Sbjct: 189 EPRDSKN 195
Score = 157 (60.3 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 35/93 (37%), Positives = 55/93 (59%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG +P++ +L F+K G V +IY+ E R RGFGF+T + ++AV M
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 253
H +DI G+ + V +A PR ++ +AP +PG
Sbjct: 174 -HFHDIMGKKVEVKRAEPRDSK-NQAPG--QPG 202
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 49/168 (29%), Positives = 86/168 (51%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L V LP ++ E+L LF G VE A++I ++ S G+GFV T ++AE+A+
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ + + + V+ A P + V + +Y+ LP + +E +FS G+++
Sbjct: 82 NGLRLQSKTIKVSYARP-------SSEVIKDA-NLYISGLPRTMTQKDVEDMFSRFGRII 133
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
N+RV+ D+ TG SRG F+ +E +AI + +G G + + V
Sbjct: 134 NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181
Score = 138 (53.6 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I++ NL + D L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 313 AALDGQNLDGRAIRVNVAEDRQRR 336
A+L+G L + ++V+ ++ +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL D D L +F G V +VI + T++ +GFGFVTM+ EEA A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 222 HRYDIDGRLLTVN 234
+ Y + ++L V+
Sbjct: 306 NGYRLGDKILQVS 318
Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 256 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315
+ V LP + L +FS G+V +A+++ D+ G S G+GFV + + AI+ L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 316 DGQNLDGRAIRVNVA 330
+G L + I+V+ A
Sbjct: 82 NGLRLQSKTIKVSYA 96
Score = 92 (37.4 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA L++ LP + + + +F + G + + V+ ++ T SRG F+ EAE+A+
Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 219 EMFHRYDIDGRL--LTVNKAA 237
F+ + G +TV AA
Sbjct: 165 TSFNGHKPPGSSEPITVKFAA 185
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 49/168 (29%), Positives = 86/168 (51%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L V LP ++ E+L LF G VE A++I ++ S G+GFV T ++AE+A+
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ + + + V+ A P + V + +Y+ LP + +E +FS G+++
Sbjct: 82 NGLRLQSKTIKVSYARP-------SSEVIKDA-NLYISGLPRTMTQKDVEDMFSRFGRII 133
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
N+RV+ D+ TG SRG F+ +E +AI + +G G + + V
Sbjct: 134 NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181
Score = 138 (53.6 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I++ NL + D L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 313 AALDGQNLDGRAIRVNVAEDRQRR 336
A+L+G L + ++V+ ++ +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL D D L +F G V +VI + T++ +GFGFVTM+ EEA A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 222 HRYDIDGRLLTVN 234
+ Y + ++L V+
Sbjct: 306 NGYRLGDKILQVS 318
Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 256 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315
+ V LP + L +FS G+V +A+++ D+ G S G+GFV + + AI+ L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 316 DGQNLDGRAIRVNVA 330
+G L + I+V+ A
Sbjct: 82 NGLRLQSKTIKVSYA 96
Score = 92 (37.4 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA L++ LP + + + +F + G + + V+ ++ T SRG F+ EAE+A+
Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 219 EMFHRYDIDGRL--LTVNKAA 237
F+ + G +TV AA
Sbjct: 165 TSFNGHKPPGSSEPITVKFAA 185
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 44/84 (52%), Positives = 59/84 (70%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G ++YVGNL + V +A LE+ F+ +G V +A+VV DR TGRSRGFGFV M S+ E AI
Sbjct: 2 GSKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAI 61
Query: 313 AALDGQNLDGRAIRVNVAEDRQRR 336
A L+G+ +DGR + VN A +RR
Sbjct: 62 AGLNGKEMDGRNLMVNEARPPERR 85
Score = 174 (66.3 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 40/86 (46%), Positives = 54/86 (62%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
+KL+VGNL Y V L F GTV+ A+V+ +R T RSRGFGFV M + +EA+ A+
Sbjct: 3 SKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIA 62
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPER 245
+ ++DGR L VN+A P PER
Sbjct: 63 GLNGKEMDGRNLMVNEARP----PER 84
>RGD|620369 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS] [GO:0003823 "antigen binding" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA;ISO] [GO:0016363 "nuclear
matrix" evidence=IEA;ISO] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:620369 GO:GO:0003823 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0016363
GO:GO:0000398 eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 226 (84.6 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 61/181 (33%), Positives = 94/181 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLF-EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
+ F+ N+P+DV + L L EK G V E++ + E +SRG V E +KA E
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAE 129
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERA-PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
+ +++ + GR L V K P G RA + G ++V NL ++V +L++VFS G
Sbjct: 130 VLNKHSLSGRPLKV-KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAG 188
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
VV A ++ D++ G+SRG G VT E AI+ +GQ L R + V + E +
Sbjct: 189 VVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGD 247
Query: 339 F 339
F
Sbjct: 248 F 248
>UNIPROTKB|F1LV13 [details] [associations]
symbol:Hnrpm "Protein Hnrpm" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
IPI:IPI01016435 RefSeq:NP_446328.2 UniGene:Rn.10156 GeneID:116655
KEGG:rno:116655 NextBio:619427 PRIDE:F1LV13
Ensembl:ENSRNOT00000011047 Uniprot:F1LV13
Length = 690
Score = 226 (84.6 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 61/181 (33%), Positives = 94/181 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLF-EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
+ F+ N+P+DV + L L EK G V E++ + E +SRG V E +KA E
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAE 129
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERA-PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
+ +++ + GR L V K P G RA + G ++V NL ++V +L++VFS G
Sbjct: 130 VLNKHSLSGRPLKV-KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAG 188
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
VV A ++ D++ G+SRG G VT E AI+ +GQ L R + V + E +
Sbjct: 189 VVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGD 247
Query: 339 F 339
F
Sbjct: 248 F 248
>UNIPROTKB|Q62826 [details] [associations]
symbol:Hnrnpm "Heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620369 GO:GO:0003823 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0016363 GO:GO:0000398
eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 226 (84.6 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 61/181 (33%), Positives = 94/181 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLF-EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
+ F+ N+P+DV + L L EK G V E++ + E +SRG V E +KA E
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAE 129
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERA-PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
+ +++ + GR L V K P G RA + G ++V NL ++V +L++VFS G
Sbjct: 130 VLNKHSLSGRPLKV-KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAG 188
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
VV A ++ D++ G+SRG G VT E AI+ +GQ L R + V + E +
Sbjct: 189 VVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGD 247
Query: 339 F 339
F
Sbjct: 248 F 248
>UNIPROTKB|F1SA50 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 OMA:PGIERMA InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:FP090904
Ensembl:ENSSSCT00000014856 Uniprot:F1SA50
Length = 704
Score = 226 (84.6 bits), Expect = 9.9e-18, P = 9.9e-18
Identities = 61/181 (33%), Positives = 94/181 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLF-EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
+ F+ N+P+DV + L L EK G V E++ + E +SRG V E +KA E
Sbjct: 85 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAE 143
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERA-PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
+ +++ + GR L V K P G RA + G ++V NL ++V +L++VFS G
Sbjct: 144 VLNKHSLSGRPLKV-KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAG 202
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
VV A ++ D++ G+SRG G VT E AI+ +GQ L R + V + E +
Sbjct: 203 VVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGD 261
Query: 339 F 339
F
Sbjct: 262 F 262
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 217 (81.4 bits), Expect = 1.0e-17, P = 1.0e-17
Identities = 51/173 (29%), Positives = 88/173 (50%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
D+K L V LP ++ ++L LF G VE A++I ++ S G+GFV +AE+
Sbjct: 31 DSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAER 90
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
A+ + + + + V+ A P + A +Y+ LP + +E++F
Sbjct: 91 AISTLNGLRLQSKTIKVSYARPSSDSIKDA--------NLYISGLPKTMTQKDVEEMFGR 142
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
+G+++N+RV+ D+ +G SRG F+ E DAI L+GQ G A ++ V
Sbjct: 143 YGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTV 195
Score = 135 (52.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I++ NL + D L Q+F G V N +V+ D T + +GFGFVTM+ E AI
Sbjct: 257 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAI 316
Query: 313 AALDGQNLDGRAIRVNVAEDRQRR 336
A+L+G L + ++V+ + +
Sbjct: 317 ASLNGYRLGDKILQVSFKTSKSHK 340
Score = 119 (46.9 bits), Expect = 0.00011, P = 0.00011
Identities = 26/91 (28%), Positives = 46/91 (50%)
Query: 240 GTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 299
G + A + + + V LP + L +FS G+V +A+++ D+ G S G+GF
Sbjct: 20 GYEDHMADELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 79
Query: 300 VTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
V + + AI+ L+G L + I+V+ A
Sbjct: 80 VNYLNPNDAERAISTLNGLRLQSKTIKVSYA 110
Score = 115 (45.5 bits), Expect = 0.00031, P = 0.00031
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL D D L +F G V +VI + T++ +GFGFVTM+ EEA A+
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 222 HRYDIDGRLLTVN 234
+ Y + ++L V+
Sbjct: 320 NGYRLGDKILQVS 332
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 216 (81.1 bits), Expect = 1.0e-17, P = 1.0e-17
Identities = 53/182 (29%), Positives = 95/182 (52%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L + E L +++ G + V+ + + RSRG GFVT S+V E + A+
Sbjct: 10 KLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMAA 69
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ IDGR+L +A PR +R +++VG + + + L + F ++GK+
Sbjct: 70 -RPHSIDGRVLEPRRAIPREASGQRGAHWTLK--KLFVGGIKEDTEEHHLREYFEKYGKI 126
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIA----ALDGQNLDGRAIRVNVAEDRQRR 336
++ DR++GR RGFGFVT ++ + A++G + + R +++ E +Q +
Sbjct: 127 DAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKA-LSIWEMQQVQ 185
Query: 337 SS 338
S
Sbjct: 186 GS 187
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 221 (82.9 bits), Expect = 1.0e-17, P = 1.0e-17
Identities = 53/178 (29%), Positives = 87/178 (48%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ + L FE+ GT+ V+ + T RSRGFGFVT S+V+E +++
Sbjct: 34 KLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMDA 93
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGRL+ +A R + P +I+VG + + + L F + GK+
Sbjct: 94 -RPHKVDGRLVEPKRAVSR--EDSSKPFAHTTVKKIFVGGIKDDTEENHLRDYFDQFGKI 150
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ D +TG RGF FVT + D I ++G V A +Q ++
Sbjct: 151 EVVEIMVDHKTGNKRGFAFVTFDDHDSV-DRIVIQKYHTVNGHNCEVRKALSKQEMAN 207
Score = 125 (49.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 33/94 (35%), Positives = 49/94 (52%)
Query: 244 ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMS 303
E PR E ++++G L +E + L F + G + + V+ D T RSRGFGFVT S
Sbjct: 23 EGQPREPEQLRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYS 82
Query: 304 SETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
S E+N ++ A +DGR + A R+ S
Sbjct: 83 SVDEVNASMDARP-HKVDGRLVEPKRAVSREDSS 115
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 55/178 (30%), Positives = 87/178 (48%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ + L F+K GT+ V+ + +T RSRGFGFVT S EE + A+
Sbjct: 14 KLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSC-EEVDAAM-C 71
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR++ +A R + P +I+VG + + L F ++GK+
Sbjct: 72 ARPHKVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKI 129
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
V+ DR++G+ RGF FVT + D I ++G V A +Q S
Sbjct: 130 ETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVVQKYHTINGHNCEVKKALSKQEMQS 186
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 219 (82.2 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 53/174 (30%), Positives = 90/174 (51%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETD-RSRGFGFVTMSTVEEAE 215
D+K L V LP ++ E+L LF G +E +++ ++ T+ +S G+GFV ++AE
Sbjct: 63 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAE 122
Query: 216 KAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFS 275
KA+ + + + + V+ A P A +YV LP + LEQ+FS
Sbjct: 123 KAINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFS 174
Query: 276 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
++G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G + V
Sbjct: 175 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 228
Score = 142 (55.0 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 305 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 364
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ + ++
Sbjct: 365 ASLNGYRLGDRVLQVSFKTSKTHKA 389
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L +F G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 222 HRYDIDGRLLTVN 234
+ Y + R+L V+
Sbjct: 368 NGYRLGDRVLQVS 380
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 216 (81.1 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 52/174 (29%), Positives = 89/174 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+F+G L + E L F + G V+ V+ + T RSRGFGFVT +K +
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
R+++D + + A PR QP+ R +I+VG L ++Q F + GKV
Sbjct: 61 -SRHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKQYFEQFGKV 115
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
+A +++D+ T R RGFGFVT SE ++ + + + ++ + + A+ ++
Sbjct: 116 DDAMLMFDKTTNRHRGFGFVTFESE-DIVEKVCEIHFHEINNKMVECKKAQPKE 168
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 49/173 (28%), Positives = 88/173 (50%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+G L + + L F K G + V+ + T RSRGFGFVT + +K +
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
H +++D + + A PR QP+ R +I+VG L ++Q F + GKV
Sbjct: 61 H-HELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSANTVVEDVKQYFEQFGKVE 115
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
+A +++D+ T R RGFGFVT +E ++ + + + ++ + + A+ ++
Sbjct: 116 DAMLMFDKTTNRHRGFGFVTFENE-DVVEKVCEIHFHEINNKMVECKKAQPKE 167
Score = 149 (57.5 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 36/106 (33%), Positives = 58/106 (54%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG L + E + FE+ G VE A +++++ T+R RGFGFVT + EK E+
Sbjct: 89 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 148
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVD 266
H ++I+ +++ KA P+ +F PG R LP+ +D
Sbjct: 149 -HFHEINNKMVECKKAQPKEV-------MFPPGTRGRARGLPYTMD 186
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 55/178 (30%), Positives = 87/178 (48%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ G + V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 24 KLFIGGLSFETTDESLRSHFEQWGMLTDC-VVMDPNTKRSRGFGFVTYTTVEEVDAAMNA 82
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+DGR++ +A R + + P +I+VG + + + L F ++GK+
Sbjct: 83 -RPQKMDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 139
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR +G+ RGF FVT + D I +G V A +Q +S
Sbjct: 140 EVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTGNGHNCEVRKALSKQEMAS 196
Score = 126 (49.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 33/94 (35%), Positives = 52/94 (55%)
Query: 245 RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS 304
++P+ E ++++G L +E + L F + G + + VV D T RSRGFGFVT ++
Sbjct: 14 QSPKELEQLRKLFIGGLSFETTDESLRSHFEQWGMLTDC-VVMDPNTKRSRGFGFVTYTT 72
Query: 305 ETELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A Q +DGR + A ED QR
Sbjct: 73 VEEVDAAMNARP-QKMDGRVVEPKRAVSREDSQR 105
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 55/178 (30%), Positives = 87/178 (48%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE + A+
Sbjct: 15 KLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
++GR++ +A R + + P +I+VG + + ++ L F ++GK
Sbjct: 75 -RPQKVNGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEH-HLRDYFEQYGKT 130
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ DR G+ RGF FVT + D I ++G V +D SS
Sbjct: 131 EVIEIMTDRGRGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCETRVKQDMASASS 187
Score = 115 (45.5 bits), Expect = 0.00026, P = 0.00026
Identities = 31/93 (33%), Positives = 51/93 (54%)
Query: 246 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 306 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 335
E++ A+ A Q ++GR + A ED QR
Sbjct: 66 EEVDAAMNARP-QKVNGRVVEPKRAVSREDSQR 97
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 48/174 (27%), Positives = 90/174 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+F+G L + +E L F + G V V+ + T R+RGFGF+T +K +
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+++DG+ + A P+ TQ + + ++++G L ++Q F +GKV
Sbjct: 106 -REHELDGKKIDPKVAFPKRTQAKLVTKTK----KVFIGGLSATSTLEDMKQYFETYGKV 160
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
+A +++D+ T R RGFGFVT S+ E+ D + + ++G+ + A+ ++
Sbjct: 161 EDAMLMFDKATQRHRGFGFVTFDSD-EVADKVCEIHFHEINGKMVECKKAQPKE 213
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 48/168 (28%), Positives = 86/168 (51%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L V LP ++ ++L LF G VE A++I ++ S G+GFV T ++AE+A+
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ + + + V+ A P + V + +Y+ LP + +E +FS G+++
Sbjct: 82 NGLRLQSKTIKVSYARP-------SSEVIKDA-NLYISGLPRNMTQKDVEDMFSRFGRII 133
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
N+RV+ D+ TG SRG F+ +E +AI + +G G + + V
Sbjct: 134 NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181
Score = 138 (53.6 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I++ NL + D L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 313 AALDGQNLDGRAIRVNVAEDRQRR 336
A+L+G L + ++V+ ++ +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL D D L +F G V +VI + T++ +GFGFVTM+ EEA A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 222 HRYDIDGRLLTVN 234
+ Y + ++L V+
Sbjct: 306 NGYRLGDKILQVS 318
Score = 94 (38.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA L++ LP ++ + + +F + G + + V+ ++ T SRG F+ EAE+A+
Sbjct: 105 DANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 219 EMFHRYDIDGRL--LTVNKAA 237
F+ + G +TV AA
Sbjct: 165 TSFNGHKPPGSSEPITVKFAA 185
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 48/168 (28%), Positives = 86/168 (51%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L V LP ++ E+L LF G +E A++I ++ S G+GFV T ++AE+A+
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ + + + V+ A P + V + +Y+ LP + +E +FS G+++
Sbjct: 82 NGLRLQSKTIKVSYARP-------SSEVIKDA-NLYISGLPRTMTQKDVEDMFSPFGRII 133
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
N+RV+ D+ TG SRG F+ +E +AI + +G G + + V
Sbjct: 134 NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181
Score = 141 (54.7 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 29/84 (34%), Positives = 50/84 (59%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I++ NL + D L Q+F G V N +V+ D T + +GFGFVTM++ E + AI
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAI 302
Query: 313 AALDGQNLDGRAIRVNVAEDRQRR 336
A+L+G L + ++V+ ++ +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL D D L +F G V +VI + T++ +GFGFVTM+ EEA A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 222 HRYDIDGRLLTVN 234
+ Y + ++L V+
Sbjct: 306 NGYRLGDKILQVS 318
Score = 89 (36.4 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA L++ LP + + + +F G + + V+ ++ T SRG F+ EAE+A+
Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 219 EMFHRYDIDGRL--LTVNKAA 237
F+ + G +TV AA
Sbjct: 165 TSFNGHKPPGSSEPITVKFAA 185
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 214 (80.4 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 55/174 (31%), Positives = 85/174 (48%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L L F GT+ V+ N +T RSR FGFVT S VEEA+ A+
Sbjct: 29 KLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEEADAAMAA 88
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DG + + +A R + P +++VG L +V L Q FS+ G V
Sbjct: 89 -SPHAVDGNSVELKRAVSR--EDSAKPGAHAKVKKLFVGGLKGDVGEGDLVQHFSQFGPV 145
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
A ++ D+++G+ RGFGFV + + D A + + G + V A ++
Sbjct: 146 EKAEIIADKQSGKKRGFGFVYFQNH-DAADKAAVVKFHPIQGHRVEVKKAVPKE 198
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 217 (81.4 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 54/176 (30%), Positives = 92/176 (52%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
+ KL V +P+D+DS+ L K G +E V+ +R T RSRGFG+VT ++ E+A+ A+
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
+ H + R+L V A P+ + A +V RI+V +P V + F +G
Sbjct: 62 KGEHF--LGNRILEVKVATPKEEMRQPAKKVT----RIFVARIPSSVSESDFRSHFERYG 115
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++ + + D + + RG GF+T SS + D + D +L G + V+ A ++
Sbjct: 116 EITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME--DTHDLGGTTVAVDRATPKE 169
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 220 (82.5 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 51/172 (29%), Positives = 91/172 (52%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
D K+F+G L ++ + L FE+ G V V+ + T RSRGFGF+T + + +
Sbjct: 162 DGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM 221
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
H +DG+++ +A PR Q + A +++VG +P + F++ G
Sbjct: 222 SKEHH--LDGKIIDPKRAIPREEQEKTA--------KMFVGGVPGDCTEEEFRNFFNQFG 271
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
+V++A ++ D++TGR RGFGFVT +E+ + +A + + G+ + V A
Sbjct: 272 RVLDATLMMDKDTGRPRGFGFVTYENESAV-EATMSQPYITIHGKPVEVKRA 322
Score = 137 (53.3 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 40/133 (30%), Positives = 66/133 (49%)
Query: 199 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA--APRGTQPERAPRVFEPGFRI 256
R + T E+ E + Y+ + LT + A + E +P E G ++
Sbjct: 109 RGQALSSATWDNAEDGENSKN--DNYNENQSALTGSGAMESNEDNAEETSPFNREDG-KM 165
Query: 257 YVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA-- 314
++G L WE + L F + G+V++ V+ D TGRSRGFGF+T + +N+ ++
Sbjct: 166 FIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEH 225
Query: 315 -LDGQNLDG-RAI 325
LDG+ +D RAI
Sbjct: 226 HLDGKIIDPKRAI 238
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 216 (81.1 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 52/174 (29%), Positives = 89/174 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+F+G L + E L F + G V+ V+ + T RSRGFGFVT +K +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
R+++D + + A PR QP+ R +I+VG L ++Q F + GKV
Sbjct: 81 -SRHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKQYFEQFGKV 135
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
+A +++D+ T R RGFGFVT SE ++ + + + ++ + + A+ ++
Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTFESE-DIVEKVCEIHFHEINNKMVECKKAQPKE 188
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 222 (83.2 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 61/176 (34%), Positives = 94/176 (53%)
Query: 161 KLFVGNLPYDVDSEKLAMLF-EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
++F+ N+PYD+ + + L EK G V E+ + E +SRG G V E +KA+E
Sbjct: 38 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKALE 96
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPR--VFEPGFRIYVGNLPWEVDNARLEQVFSEH 277
++YD+ GR L + K P G RA + G I+V NL ++V +L++VFS
Sbjct: 97 TMNKYDLSGRPLNI-KEDPDGENARRALQRTAGRLGSTIFVANLDFKVGWKKLKEVFSIA 155
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
G V A + D++ G+SRG G VT E AI+ +GQ L R + V + +D+
Sbjct: 156 GTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKM-DDK 209
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 216 (81.1 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 50/174 (28%), Positives = 88/174 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+F+G L + E L F + G + A V+ + T RSRGFGFVT S +K +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+++DG+ + A PR P+ R +I+VG L ++ F + G +
Sbjct: 90 -GTHELDGKKVDPKVAFPRRAHPKMVTRTK----KIFVGGLSAPTTLEDVKSYFEQFGPI 144
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
+A +++D++T R RGFGFVT SE ++ D + + ++ + + A+ ++
Sbjct: 145 EDAMLMFDKQTNRHRGFGFVTFQSE-DVVDKVCEIHFHEINNKMVECKKAQPKE 197
Score = 143 (55.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 32/104 (30%), Positives = 56/104 (53%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+FVG L E + FE+ G +E A ++++++T+R RGFGFVT + + +K E+
Sbjct: 119 KIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEI 178
Query: 221 FHRYDIDGRLLTVNKAAPRGTQ-PERAPRVFEPGFRIYVGNLPW 263
H ++I+ +++ KA P+ P + G Y N+ W
Sbjct: 179 -HFHEINNKMVECKKAQPKEVMLPANLAKTRAAGRSAY-DNIMW 220
Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 31/92 (33%), Positives = 45/92 (48%)
Query: 243 PERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTM 302
P P +PG ++++G L W+ L F +G + A V+ D T RSRGFGFVT
Sbjct: 21 PSEVPN--DPG-KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTF 77
Query: 303 SSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
S + D + LDG+ + VA R+
Sbjct: 78 SDPNSV-DKVLTQGTHELDGKKVDPKVAFPRR 108
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 222 (83.2 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 56/187 (29%), Positives = 101/187 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L F + G +V+ + + +SRGFGFV+ E+A+KAV+
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ D++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ F+ G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERQA 376
Score = 207 (77.9 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 51/179 (28%), Positives = 99/179 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F +Y+ N ++D+ RL++ F ++G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVYIKNFGEDMDDERLKEWFGQYGA 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +V+ D + G+SRGFGFV+ + A+ ++G++L+G+AI V A+ + R +
Sbjct: 217 ALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQT 274
Score = 174 (66.3 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 55/181 (30%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G I++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+GFV ++ AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 213 (80.0 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 48/168 (28%), Positives = 86/168 (51%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L V LP ++ ++L LF G VE A++I ++ S G+GFV T ++AE+A+
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ + + + V+ A P + V + +Y+ LP + +E +FS G+++
Sbjct: 82 NGLRLQSKTIKVSYARP-------SSEVIKDA-NLYISGLPRTMTQKDVEDMFSRFGRII 133
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
N+RV+ D+ TG SRG F+ +E +AI + +G G + + V
Sbjct: 134 NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181
Score = 138 (53.6 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I++ NL + D L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 313 AALDGQNLDGRAIRVNVAEDRQRR 336
A+L+G L + ++V+ ++ +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL D D L +F G V +VI + T++ +GFGFVTM+ EEA A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 222 HRYDIDGRLLTVN 234
+ Y + ++L V+
Sbjct: 306 NGYRLGDKILQVS 318
Score = 92 (37.4 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA L++ LP + + + +F + G + + V+ ++ T SRG F+ EAE+A+
Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 219 EMFHRYDIDGRL--LTVNKAA 237
F+ + G +TV AA
Sbjct: 165 TSFNGHKPPGSSEPITVKFAA 185
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 219 (82.2 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 59/177 (33%), Positives = 89/177 (50%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRE-TDRSRGFGFVTMSTVEEAEKAVEM 220
L+VG L V + L +FE G V ++I ++ + +GFV AE+A++
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ I + VN A T + F I+VG+L EV++ L Q FS G V
Sbjct: 152 LNGRRIHQSEIRVNWAYQSNTANKEDT---SNHFHIFVGDLSNEVNDEVLLQAFSAFGSV 208
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
ARV++D +TGRSRG+GFV + A+ ++DG+ L RAIR N A + + S
Sbjct: 209 SEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQPS 265
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 217 (81.4 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 56/188 (29%), Positives = 91/188 (48%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG L + E L F + G V ++ ++ T++SRGFGFV ++
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFR-----------IYVGNLPWEVDNAR 269
+++DGR + PRG QPE+ R + G++ I+VG +P A
Sbjct: 72 -KPHNLDGRNIDPKPCTPRGMQPEKT-RT-KDGWKGSKSDSNKSKKIFVGGIPHNCGEAE 128
Query: 270 LEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
L F+ G V ++YD E R RGFGF+T +E ++ A+ + ++ G+ + V
Sbjct: 129 LRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVN-MHFHDIMGKKVEVKK 187
Query: 330 AEDRQRRS 337
AE R ++
Sbjct: 188 AEPRDSKA 195
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 40/79 (50%), Positives = 54/79 (68%)
Query: 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314
++++G L W D+A L F+ G VV+A+V+ DRETGRSRGFGFV + E AI+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 315 LDGQNLDGRAIRVNVAEDR 333
+DG+ L+GR IRVN A DR
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 140 (54.3 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 36/93 (38%), Positives = 48/93 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L + D L F G V A+VI +RET RSRGFGFV + A A+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 253
+++GR + VN P +P APR + G
Sbjct: 96 MDGKELNGRHIRVN---PANDRPS-APRAYGGG 124
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 213 (80.0 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 48/168 (28%), Positives = 86/168 (51%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L V LP ++ ++L LF G VE A++I ++ S G+GFV T ++AE+A+
Sbjct: 30 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 89
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ + + + V+ A P + V + +Y+ LP + +E +FS G+++
Sbjct: 90 NGLRLQSKTIKVSYARP-------SSEVIKDA-NLYISGLPRTMTQKDVEDMFSRFGRII 141
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
N+RV+ D+ TG SRG F+ +E +AI + +G G + + V
Sbjct: 142 NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 189
Score = 138 (53.6 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I++ NL + D L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 251 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 310
Query: 313 AALDGQNLDGRAIRVNVAEDRQRR 336
A+L+G L + ++V+ ++ +
Sbjct: 311 ASLNGYRLGDKILQVSFKTNKSHK 334
Score = 117 (46.2 bits), Expect = 0.00018, P = 0.00018
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL D D L +F G V +VI + T++ +GFGFVTM+ EEA A+
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 222 HRYDIDGRLLTVN 234
+ Y + ++L V+
Sbjct: 314 NGYRLGDKILQVS 326
Score = 92 (37.4 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA L++ LP + + + +F + G + + V+ ++ T SRG F+ EAE+A+
Sbjct: 113 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 172
Query: 219 EMFHRYDIDGRL--LTVNKAA 237
F+ + G +TV AA
Sbjct: 173 TSFNGHKPPGSSEPITVKFAA 193
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 220 (82.5 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV L + +++L FEK G V+ A+++ +R + RS+G G+V A+++
Sbjct: 176 IFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVAPAIQLT 235
Query: 222 HR----YDIDGRLLTVNK-AAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
+ I +L K R ++ + P R+YVGN+ + +D L+ VF
Sbjct: 236 GQKLLGIPIIAQLTEAEKNRQARNSEASSGNKHSAPFHRLYVGNIHFSIDENDLQSVFEP 295
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
G++ ++ D ETGRSRG+GFV + +A+ ++G +L GRAIRV + D+
Sbjct: 296 FGELEFVQLQKD-ETGRSRGYGFVQFRDPNQAREALEKMNGYDLGGRAIRVGLGNDK 351
Score = 145 (56.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
+L+VGN+ + +D L +FE G +E + + ET RSRG+GFV +A +A+E
Sbjct: 274 RLYVGNIHFSIDENDLQSVFEPFGELEFVQ-LQKDETGRSRGYGFVQFRDPNQAREALEK 332
Query: 221 FHRYDIDGRLLTV----NKAAPRGTQPERAPRVFEPGFR 255
+ YD+ GR + V +K P TQ ++ + F+
Sbjct: 333 MNGYDLGGRAIRVGLGNDKFTPENTQRTQSQSANQSNFQ 371
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 38/83 (45%), Positives = 57/83 (68%)
Query: 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 310
E +R +VG L W ++ L++ FS+ G V++++++ DRE+GRSRGFGFVT E + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 311 AIAALDGQNLDGRAIRVNVAEDR 333
AI ++G+ LDGR I VN A+ R
Sbjct: 63 AIEEMNGKELDGRVITVNEAQSR 85
Score = 155 (59.6 bits), Expect = 5.2e-11, P = 5.2e-11
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
+ FVG L + + E L F + G V +++I +RE+ RSRGFGFVT + A+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 221 FHRYDIDGRLLTVNKAAPRGT 241
+ ++DGR++TVN+A RG+
Sbjct: 67 MNGKELDGRVITVNEAQSRGS 87
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 53/174 (30%), Positives = 86/174 (49%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L +E+ G + V+ + + RSRGFGFVT S++ E + A+
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ IDGR++ +A R + P +++VG + + + L F E+GK+
Sbjct: 70 -RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 126
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++ DR++G+ RGFGFVT + D I +G V A RQ
Sbjct: 127 DTIEIITDRQSGK-RGFGFVTFDDHDPV-DKIVLQKYHTKNGHNAEVRKALSRQ 178
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 213 (80.0 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 52/174 (29%), Positives = 90/174 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+F+G L + E L F K G V+ + V+ + T RSRGFGFVT +K +
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
R+++D + + A PR QP+ R +I+VG L ++Q F + GKV
Sbjct: 81 T-RHELDSKTIDPKVAFPRRAQPKLVTRTK----KIFVGGLSVNTTIEDVKQYFDQFGKV 135
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
+A +++D+ T R RGFGFVT +E ++ + + + ++ + + A+ ++
Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTFENE-DVVEKVCEIHFHEINNKMVECKKAQPKE 188
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 211 (79.3 bits), Expect = 3.8e-17, P = 3.8e-17
Identities = 48/168 (28%), Positives = 85/168 (50%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L V LP ++ ++L LF G VE A++I ++ S G+GFV T ++AE+A+
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ + + + V+ A P + V + +Y+ LP + +E +FS G+++
Sbjct: 82 NGLRLQSKTIKVSYARP-------SSEVIKDA-NLYISGLPRSMTQKDVEDMFSRFGRII 133
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
N+RV+ D+ TG SRG F+ +E +AI +G G + + V
Sbjct: 134 NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPITV 181
Score = 138 (53.6 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I++ NL + D L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 313 AALDGQNLDGRAIRVNVAEDRQRR 336
A+L+G L + ++V+ ++ +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL D D L +F G V +VI + T++ +GFGFVTM+ EEA A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 222 HRYDIDGRLLTVN 234
+ Y + ++L V+
Sbjct: 306 NGYRLGDKILQVS 318
Score = 92 (37.4 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA L++ LP + + + +F + G + + V+ ++ T SRG F+ EAE+A+
Sbjct: 105 DANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 219 EMFHRYDIDGRL--LTVNKAA 237
F+ + G +TV AA
Sbjct: 165 TNFNGHKPPGSSEPITVKFAA 185
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 213 (80.0 bits), Expect = 3.8e-17, P = 3.8e-17
Identities = 48/168 (28%), Positives = 86/168 (51%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L V LP ++ ++L LF G VE A++I ++ S G+GFV T ++AE+A+
Sbjct: 49 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 108
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ + + + V+ A P + V + +Y+ LP + +E +FS G+++
Sbjct: 109 NGLRLQSKTIKVSYARP-------SSEVIKDA-NLYISGLPRTMTQKDVEDMFSRFGRII 160
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
N+RV+ D+ TG SRG F+ +E +AI + +G G + + V
Sbjct: 161 NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 208
Score = 138 (53.6 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I++ NL + D L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 270 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 329
Query: 313 AALDGQNLDGRAIRVNVAEDRQRR 336
A+L+G L + ++V+ ++ +
Sbjct: 330 ASLNGYRLGDKILQVSFKTNKSHK 353
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL D D L +F G V +VI + T++ +GFGFVTM+ EEA A+
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 222 HRYDIDGRLLTVN 234
+ Y + ++L V+
Sbjct: 333 NGYRLGDKILQVS 345
Score = 92 (37.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA L++ LP + + + +F + G + + V+ ++ T SRG F+ EAE+A+
Sbjct: 132 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 191
Query: 219 EMFHRYDIDGRL--LTVNKAA 237
F+ + G +TV AA
Sbjct: 192 TSFNGHKPPGSSEPITVKFAA 212
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 220 (82.5 bits), Expect = 3.9e-17, P = 3.9e-17
Identities = 55/185 (29%), Positives = 99/185 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
++V NLP ++ ++L F K G + A V+ ++ SR FGFV E A AVE
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSA-VVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ + +L V +A + + E R FE G +Y+ NL VD+ +L+
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
++FSE+G V +++V+ + + G SRGFGFV S+ E A++ ++G+ + + + + +A+
Sbjct: 350 EMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQ 408
Query: 332 DRQRR 336
++ R
Sbjct: 409 RKEDR 413
Score = 156 (60.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 48/179 (26%), Positives = 84/179 (46%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
++ L+ G+L V L LF+ V V ++ RS G+ ++ S +A +A+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAM 106
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
E + + R + + + P + R+ G I++ NL +DN L + FS G
Sbjct: 107 EALNYTPLFDRPIRIMLS---NRDP--STRLSGKG-NIFIKNLDASIDNKALFETFSSFG 160
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
+++ +V D TGRS+G+GFV E AI L+G ++ + + V RQ R+
Sbjct: 161 TILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERA 218
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 219 (82.2 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 55/187 (29%), Positives = 99/187 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N +VD E L LF + G +V+ + + +S+GFGFV+ E+A KAVE
Sbjct: 122 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ ++ G+ + V +A + + R FE G +Y+ NL +D+ +L
Sbjct: 181 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 240
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 241 KEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 298
Query: 332 DRQRRSS 338
++ R +
Sbjct: 299 RKEERKA 305
Score = 207 (77.9 bits), Expect = 7.9e-16, P = 7.9e-16
Identities = 48/177 (27%), Positives = 93/177 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+ FV T E A KA+E
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 87
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ ++ R + V + R + + +Y+ N EVD+ L ++FS+ GK +
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 147
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+ +V+ D +G+S+GFGFV+ + N A+ ++G+ + G++I V A+ + R +
Sbjct: 148 SVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 203
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 219 (82.2 bits), Expect = 4.6e-17, P = 4.6e-17
Identities = 55/187 (29%), Positives = 99/187 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N +VD E L LF + G +V+ + + +S+GFGFV+ E+A KAVE
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ ++ G+ + V +A + + R FE G +Y+ NL +D+ +L
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 207 (77.9 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 48/177 (27%), Positives = 93/177 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+ FV T E A KA+E
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ ++ R + V + R + + +Y+ N EVD+ L ++FS+ GK +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+ +V+ D +G+S+GFGFV+ + N A+ ++G+ + G++I V A+ + R +
Sbjct: 219 SVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Score = 177 (67.4 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 55/181 (30%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG V V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G +++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+ FV ++ N AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 213 (80.0 bits), Expect = 4.8e-17, P = 4.8e-17
Identities = 51/180 (28%), Positives = 98/180 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L +F K G +V+ + + +S+GFGFV+ + E A+KAVE
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEM 250
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ DI+G+L+ V +A + + ++FE G ++Y+ NL +D+ +L
Sbjct: 251 NGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 310
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
FS G + +V+ +E G+S+GFG + SS + A+ ++G+ L + + + +A+
Sbjct: 311 NEFSSFGSISRVKVM--QEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Score = 188 (71.2 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 45/177 (25%), Positives = 92/177 (51%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + ++V+ + S+G+ FV A++A+E
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ + G + V + R + +Y+ N ++D+ RL+ VFS++GK +
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+ +V+ D +G+S+GFGFV+ S A+ ++G++++G+ I V A+ + R +
Sbjct: 218 SVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 273
Score = 162 (62.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 48/180 (26%), Positives = 93/180 (51%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV + L F G V + ++ T RS G+ +V + +A+KA++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ +DI + + R +R + G +++ NL +DN L + FS G
Sbjct: 70 TMN-FDI------IKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
K+++++V+ D + G S+G+ FV +++ + AI ++G+ L G + V ++R+ R +
Sbjct: 123 KILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREA 180
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 212 (79.7 bits), Expect = 4.9e-17, P = 4.9e-17
Identities = 52/174 (29%), Positives = 87/174 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L + E L +++ G + VI + +SRGFGFVT S+V E + A+
Sbjct: 22 KLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMAA 81
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ IDGR++ +A R ++ V +++VG + + + L + F ++GK+
Sbjct: 82 -RPHSIDGRVVDPKRAVSREKSEKQGSLVNVK--KLFVGGIKEDTEEHHLREYFEKYGKI 138
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++ DR++G+ RGFGFVT + D I ++G V A RQ
Sbjct: 139 DAIEIITDRQSGKKRGFGFVTFDDYDPV-DKIMLQKYHAINGHRAEVGKALSRQ 191
Score = 137 (53.3 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLFVG + D + L FEK G ++ E+I +R++ + RGFGFVT + +K M
Sbjct: 113 KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKI--M 170
Query: 221 FHRYD-IDGRLLTVNKAAPRGTQPE-RAPR 248
+Y I+G V KA R E + PR
Sbjct: 171 LQKYHAINGHRAEVGKALSRQEMKEIQGPR 200
Score = 114 (45.2 bits), Expect = 0.00043, P = 0.00043
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314
++++G L E L+ + + G++ + V+ + +SRGFGFVT SS E++ A+AA
Sbjct: 22 KLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMAA 81
Query: 315 LDGQNLDGRAIRVNVAEDRQR 335
++DGR + A R++
Sbjct: 82 RP-HSIDGRVVDPKRAVSREK 101
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 219 (82.2 bits), Expect = 5.0e-17, P = 5.0e-17
Identities = 55/187 (29%), Positives = 99/187 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N +VD E L LF + G +V+ + + +S+GFGFV+ E+A KAVE
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ ++ G+ + V +A + + R FE G +Y+ NL +D+ +L
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERKA 376
Score = 207 (77.9 bits), Expect = 9.7e-16, P = 9.7e-16
Identities = 48/177 (27%), Positives = 93/177 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+ FV T E A KA+E
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ ++ R + V + R + + +Y+ N EVD+ L ++FS+ GK +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+ +V+ D +G+S+GFGFV+ + N A+ ++G+ + G++I V A+ + R +
Sbjct: 219 SVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Score = 177 (67.4 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 55/181 (30%), Positives = 88/181 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG V V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEH 277
+ +D V K P R +R P + + G +++ NL +DN L FS
Sbjct: 71 TMN-FD-------VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
G +++ +VV D E G S+G+ FV ++ N AI ++G L+ R + V + R+ R
Sbjct: 123 GNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 338 S 338
+
Sbjct: 181 A 181
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 219 (82.2 bits), Expect = 5.7e-17, P = 5.7e-17
Identities = 52/172 (30%), Positives = 96/172 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L + NL Y E L +FEKA +++ + N++ +S+G+ F+ ++ E+A++A+
Sbjct: 488 LVLSNLSYSATEETLQEVFEKATFIKVPQ---NQQ-GKSKGYAFIEFASFEDAKEALNSC 543
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
++ +I+GR + + PRG+ R+ +P ++V L + L++ F G V
Sbjct: 544 NKMEIEGRTIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFE--GSV- 596
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
AR+V DRETG S+GFGFV +SE + A A++ +DG + ++ A+ +
Sbjct: 597 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 648
Score = 141 (54.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 42/175 (24%), Positives = 87/175 (49%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L NL +++ ++L +FE A +EI V + +S+G ++ + +AEK +E
Sbjct: 396 LLAKNLSFNITEDELKEVFEDA--LEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEK 450
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPR--VFEPGFRIYV-GNLPWEVDNARLEQVFSEHG 278
+IDGR +++ +G + ER + + + V NL + L++VF
Sbjct: 451 QGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFE--- 507
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
K +V +++ G+S+G+ F+ +S + +A+ + + ++GR IR+ + R
Sbjct: 508 KATFIKVPQNQQ-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPR 561
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 43/176 (24%), Positives = 82/176 (46%)
Query: 162 LFVGNL-PYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
LF+GNL P +E + E ++A V + T +R FG+V + E+ EKA+E+
Sbjct: 310 LFIGNLNPNKSVAELKVAISEPFAKNDLAVV--DVRTGTNRKFGYVDFESAEDLEKALEL 367
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ G + + K R ++ RA R + NL + + L++VF +
Sbjct: 368 TG-LKVFGNEIKLEKPKGRDSKKVRAART------LLAKNLSFNITEDELKEVFED---A 417
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
+ R+V + G+S+G ++ SE + + G +DGR++ + ++ +R
Sbjct: 418 LEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQR 471
Score = 129 (50.5 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFV L D E L FE G+V A ++ +RET S+GFGFV ++ E+A+ A E
Sbjct: 574 LFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630
Query: 222 HRYDIDGRLLTVNKAAPRG 240
+IDG +T++ A P+G
Sbjct: 631 EDGEIDGNKVTLDWAKPKG 649
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 218 (81.8 bits), Expect = 6.3e-17, P = 6.3e-17
Identities = 54/187 (28%), Positives = 104/187 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ NL ++ ++ + LF + G + ++ + + D+ RGFGFV + E A+KAV+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDEL 321
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ + G+ L V +A + + E + +E G +++ NL EVD+ RL+
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
FS G + +A+++ D E G+S+GFGFV ++ E N A+ ++ + L G+ + V +A+
Sbjct: 382 AEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
Query: 332 DRQ-RRS 337
++ RRS
Sbjct: 441 RKEVRRS 447
Score = 189 (71.6 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 54/179 (30%), Positives = 84/179 (46%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG L V L LF G V V + T RS G+ +V +E+ EKA++
Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGK 279
+ I GR + +Q + + R G +++ NL +DN L FS GK
Sbjct: 140 ELNYTLIKGRPCRI-----MWSQRDPSLRKMGTG-NVFIKNLDPAIDNKALHDTFSAFGK 193
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+++ +V D E G ++G+GFV S N AI ++G L+ + + V R+ R S
Sbjct: 194 ILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQS 251
Score = 159 (61.0 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 47/180 (26%), Positives = 86/180 (47%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V + E ++G+GFV +VE A A+E
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIE-- 226
Query: 222 HRYDIDGRLLTVNKA--APRGTQPERAPRV--FEPGF-RIYVGNLPWEVDNARLEQVFSE 276
H ++G LL K ++ ER +V + F +Y+ NL E+ +F +
Sbjct: 227 H---VNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQ 283
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
G++ + +V D + + RGFGFV ++ A+ L+ + G+ + V A+ + R
Sbjct: 284 FGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHER 342
>TAIR|locus:2122368 [details] [associations]
symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
Length = 304
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 53/178 (29%), Positives = 95/178 (53%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
+L N+P+ E + LFEK G+V E+ +++ +R+RG F+ M++ EEA A++
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKK-ERNRGLVFIEMASPEEAATALKS 153
Query: 221 FHRYDIDGRLLTVNKAAPRGTQ---PERAPRVFEPGFRIYVGNLPWEVDNARLEQVF-SE 276
+ +GR L V+ A + + P P P F ++V NL +E L++ F ++
Sbjct: 154 LESCEYEGRRLKVDYAKTKKKKTYAPRETPSPV-PTFNLFVANLAFEARAKHLKEFFDAD 212
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
G VV+ V++ RS G+GFV+ ++ + A+ G++ GR IR+ A+ +Q
Sbjct: 213 TGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRL--AKSKQ 268
Score = 114 (45.2 bits), Expect = 0.00032, P = 0.00032
Identities = 33/99 (33%), Positives = 48/99 (48%)
Query: 162 LFVGNLPYDVDSEKLAMLFEK-AGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
LFV NL ++ ++ L F+ G V EVI++ RS G+GFV+ T ++AE A+
Sbjct: 191 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIE 250
Query: 221 FHRYDIDGRLLTVNKA-------APRGTQPERAPRVFEP 252
F D GR + + K+ A G QP EP
Sbjct: 251 FQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEP 289
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 209 (78.6 bits), Expect = 7.3e-17, P = 7.3e-17
Identities = 56/179 (31%), Positives = 91/179 (50%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V + SRGFGFV T E A++A+
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 222 HRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F IYV NLP +VD L+ +FS+ GK
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALE--FTNIYVKNLPVDVDEQGLQDLFSQFGK 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+++ +V+ D +G SR FGFV E A+ ++G+ + GR + A+ R R +
Sbjct: 217 MLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Score = 169 (64.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 51/180 (28%), Positives = 86/180 (47%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ ++ +AE+A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ + G+ + + + +R P + + G I++ NL +DN L FS G
Sbjct: 71 TMNFEMLKGQPIRIMWS-------QRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+++ +V D E G SRGFGFV + AI ++G L+ R + V + R+ R +
Sbjct: 124 NILSCKVACD-EHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Score = 160 (61.4 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 44/133 (33%), Positives = 68/133 (51%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
++V NLP DVD + L LF + G + +V+ + + SR FGFV EEA+KAV
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ ++ GRLL +A R + R FE G +YV NL +D+ +L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 272 QVFSEHGKVVNAR 284
+ FS +G + +A+
Sbjct: 312 KEFSPYGVITSAK 324
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 211 (79.3 bits), Expect = 7.3e-17, P = 7.3e-17
Identities = 51/174 (29%), Positives = 88/174 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+F+G L + E L F + G V+ V+ + T RSRGFGFVT +K +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
R+++D + + A PR QP+ R +I+VG L ++ F + GKV
Sbjct: 81 -SRHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKHYFEQFGKV 135
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
+A +++D+ T R RGFGFVT SE ++ + + + ++ + + A+ ++
Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTFESE-DIVEKVCEIHFHEINNKMVECKKAQPKE 188
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 211 (79.3 bits), Expect = 7.3e-17, P = 7.3e-17
Identities = 51/174 (29%), Positives = 88/174 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+F+G L + E L F + G V+ V+ + T RSRGFGFVT +K +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
R+++D + + A PR QP+ R +I+VG L ++ F + GKV
Sbjct: 81 -SRHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKHYFEQFGKV 135
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
+A +++D+ T R RGFGFVT SE ++ + + + ++ + + A+ ++
Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTFESE-DIVEKVCEIHFHEINNKMVECKKAQPKE 188
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 211 (79.3 bits), Expect = 7.3e-17, P = 7.3e-17
Identities = 51/174 (29%), Positives = 88/174 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
K+F+G L + E L F + G V+ V+ + T RSRGFGFVT +K +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
R+++D + + A PR QP+ R +I+VG L ++ F + GKV
Sbjct: 81 -SRHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKHYFEQFGKV 135
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
+A +++D+ T R RGFGFVT SE ++ + + + ++ + + A+ ++
Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTFESE-DIVEKVCEIHFHEINNKMVECKKAQPKE 188
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 218 (81.8 bits), Expect = 7.3e-17, P = 7.3e-17
Identities = 51/172 (29%), Positives = 94/172 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L + NL Y E L +FEKA +++ + + +S+G+ F+ ++ E+A++A+
Sbjct: 489 LVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSC 544
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
++ +I+GR + + PRG+ R+ +P ++V L + L++ F G V
Sbjct: 545 NKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFD--GSV- 597
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
AR+V DRETG S+GFGFV +SE + A A++ +DG + ++ A+ +
Sbjct: 598 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 649
Score = 155 (59.6 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 46/180 (25%), Positives = 86/180 (47%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
DA+ L NLPY V ++L +FE A + + + +S+G ++ T +AEK
Sbjct: 392 DARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAEKT 446
Query: 218 VEMFHRYDIDGRLLTVNKAAPRG-TQPERAPR--VFEPGFRIYV-GNLPWEVDNARLEQV 273
E +IDGR +++ +G Q R + + + V NL + L++V
Sbjct: 447 FEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEV 506
Query: 274 FSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
F E + V + G+S+G+ F+ +S + +A+ + + + ++GRAIR+ + R
Sbjct: 507 F-EKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 562
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 41/178 (23%), Positives = 81/178 (45%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFVGNL ++ + +L V+ R +R FG+V + E+ EKA+E+
Sbjct: 310 LFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVR-IGMTRKFGYVDFESAEDLEKALELT 368
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ G + + K + ++ ER R + NLP++V L++VF + ++
Sbjct: 369 G-LKVFGNEIKLEKPKGKDSKKERDART------LLAKNLPYKVTQDELKEVFEDAAEI- 420
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 339
R+V + G+S+G ++ +E + G +DGR+I + ++ + +
Sbjct: 421 --RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDY 474
Score = 126 (49.4 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFV L D E L F+ G+V A ++ +RET S+GFGFV ++ E+A+ A E
Sbjct: 575 LFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 631
Query: 222 HRYDIDGRLLTVNKAAPRG 240
+IDG +T++ A P+G
Sbjct: 632 EDGEIDGNKVTLDWAKPKG 650
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 217 (81.4 bits), Expect = 7.4e-17, P = 7.4e-17
Identities = 50/172 (29%), Positives = 94/172 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L + NL Y E L +FEKA +++ + + +S+G+ F+ ++ E+A++A+
Sbjct: 403 LVLSNLSYSATEETLQEVFEKATHIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSC 458
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
++ +I+GR + + PRG+ R+ +P ++V L + L++ F G +
Sbjct: 459 NKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFD--GSI- 511
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
AR+V DRETG S+GFGFV +SE + A A++ +DG + ++ A+ +
Sbjct: 512 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 563
Score = 125 (49.1 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFV L D E L F+ G++ A ++ +RET S+GFGFV ++ E+A+ A E
Sbjct: 489 LFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 545
Query: 222 HRYDIDGRLLTVNKAAPRG 240
+IDG +T++ A P+G
Sbjct: 546 EDGEIDGNKVTLDWAKPKG 564
Score = 117 (46.2 bits), Expect = 0.00047, P = 0.00047
Identities = 41/164 (25%), Positives = 76/164 (46%)
Query: 162 LFVGNLPYDVDSEKLAM----LFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
LFVGNL ++ + +L LF K + + +V SR FG+V + E+ EKA
Sbjct: 231 LFVGNLNFNKSAPELKTGISDLFAK-NDLAVVDV----RIGVSRKFGYVDFESAEDLEKA 285
Query: 218 VEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEH 277
+E+ + G + + K + ++ +R R + NLP++V L++VF +
Sbjct: 286 LELTG-LKVFGNEIKLEKPKGKDSKKDRDART------LLAKNLPYKVTQDELKEVFED- 337
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD 321
V R+V + G+S+G ++ +E + + G +D
Sbjct: 338 --AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEID 377
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 217 (81.4 bits), Expect = 7.5e-17, P = 7.5e-17
Identities = 50/172 (29%), Positives = 94/172 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L + NL Y E L +FEKA +++ + + +S+G+ F+ ++ E+A++A+
Sbjct: 408 LVLSNLSYSATEETLQEVFEKATHIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSC 463
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
++ +I+GR + + PRG+ R+ +P ++V L + L++ F G +
Sbjct: 464 NKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFD--GSI- 516
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
AR+V DRETG S+GFGFV +SE + A A++ +DG + ++ A+ +
Sbjct: 517 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 568
Score = 125 (49.1 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFV L D E L F+ G++ A ++ +RET S+GFGFV ++ E+A+ A E
Sbjct: 494 LFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 550
Query: 222 HRYDIDGRLLTVNKAAPRG 240
+IDG +T++ A P+G
Sbjct: 551 EDGEIDGNKVTLDWAKPKG 569
Score = 117 (46.2 bits), Expect = 0.00047, P = 0.00047
Identities = 41/164 (25%), Positives = 76/164 (46%)
Query: 162 LFVGNLPYDVDSEKLAM----LFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
LFVGNL ++ + +L LF K + + +V SR FG+V + E+ EKA
Sbjct: 236 LFVGNLNFNKSAPELKTGISDLFAK-NDLAVVDV----RIGVSRKFGYVDFESAEDLEKA 290
Query: 218 VEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEH 277
+E+ + G + + K + ++ +R R + NLP++V L++VF +
Sbjct: 291 LELTG-LKVFGNEIKLEKPKGKDSKKDRDART------LLAKNLPYKVTQDELKEVFED- 342
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD 321
V R+V + G+S+G ++ +E + + G +D
Sbjct: 343 --AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEID 382
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 217 (81.4 bits), Expect = 7.5e-17, P = 7.5e-17
Identities = 50/172 (29%), Positives = 94/172 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L + NL Y E L +FEKA +++ + + +S+G+ F+ ++ E+A++A+
Sbjct: 408 LVLSNLSYSATEETLQEVFEKATHIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSC 463
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
++ +I+GR + + PRG+ R+ +P ++V L + L++ F G +
Sbjct: 464 NKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFD--GSI- 516
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
AR+V DRETG S+GFGFV +SE + A A++ +DG + ++ A+ +
Sbjct: 517 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 568
Score = 125 (49.1 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFV L D E L F+ G++ A ++ +RET S+GFGFV ++ E+A+ A E
Sbjct: 494 LFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 550
Query: 222 HRYDIDGRLLTVNKAAPRG 240
+IDG +T++ A P+G
Sbjct: 551 EDGEIDGNKVTLDWAKPKG 569
Score = 117 (46.2 bits), Expect = 0.00047, P = 0.00047
Identities = 41/164 (25%), Positives = 76/164 (46%)
Query: 162 LFVGNLPYDVDSEKLAM----LFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
LFVGNL ++ + +L LF K + + +V SR FG+V + E+ EKA
Sbjct: 236 LFVGNLNFNKSAPELKTGISDLFAK-NDLAVVDV----RIGVSRKFGYVDFESAEDLEKA 290
Query: 218 VEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEH 277
+E+ + G + + K + ++ +R R + NLP++V L++VF +
Sbjct: 291 LELTG-LKVFGNEIKLEKPKGKDSKKDRDART------LLAKNLPYKVTQDELKEVFED- 342
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD 321
V R+V + G+S+G ++ +E + + G +D
Sbjct: 343 --AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEID 382
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 217 (81.4 bits), Expect = 7.6e-17, P = 7.6e-17
Identities = 55/187 (29%), Positives = 101/187 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D++ E+L +F K G +V+ + + +S+GFGFV+ E+A+KAV+
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ D++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ F G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERQA 376
Score = 196 (74.1 bits), Expect = 9.7e-14, P = 9.7e-14
Identities = 46/179 (25%), Positives = 100/179 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 222 HRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGK 279
+ ++ R + V + R + E R E F +Y+ N ++++ RL+++F ++G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVYIKNFGDDMNDERLKEMFGKYGP 216
Query: 280 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
++ +V+ D + G+S+GFGFV+ + A+ ++G++++G+++ V A+ + R +
Sbjct: 217 ALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQT 274
Score = 177 (67.4 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 53/180 (29%), Positives = 88/180 (48%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV L F AG + V + T RS G+ +V +AE+A++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ I GR + + + +R P + + G I++ NL +DN L FS G
Sbjct: 71 TMNFDVIKGRPVRIMWS-------QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+++ +VV D E G S+G+GFV ++ AI ++G L+ R + V + R+ R +
Sbjct: 124 NILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 213 (80.0 bits), Expect = 8.1e-17, P = 8.1e-17
Identities = 56/176 (31%), Positives = 94/176 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L++G+L Y VD L F + G + +VI N+ T + G+GF+ + AE+ ++ +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 222 HRYDIDGRLLT--VNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEH-G 278
+ + G LT +N A+ Q A P I+VG+L +V + L++ F H
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAG----PDHSIFVGDLAPDVTDYLLQETFRVHYS 141
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
V A+VV D TGRS+G+GFV + E+E N A+A ++G R +R++ A ++
Sbjct: 142 SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKK 197
Score = 90 (36.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFE-KAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
D +FVG+L DV L F +V A+V+ + T RS+G+GFV + E +A
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 218 VEMFHRYDIDGRLLTVNKAAPR---GTQPERAPRVFEP 252
+ + R + ++ A P+ G Q + + P
Sbjct: 175 MAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYP 212
Score = 81 (33.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 18/73 (24%), Positives = 38/73 (52%)
Query: 256 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315
I V NL V L++ FS+ G+V+ ++ ++G+G+V + +A+ +
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIP------ATKGYGYVQFKTRPSAEEAVQRM 292
Query: 316 DGQNLDGRAIRVN 328
GQ + +A+R++
Sbjct: 293 QGQVIGQQAVRIS 305
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 213 (80.0 bits), Expect = 8.3e-17, P = 8.3e-17
Identities = 51/180 (28%), Positives = 98/180 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L +F K G +V+ + + +S+GFGFV+ + E A+KAVE
Sbjct: 250 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEM 308
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARLE 271
+ DI+G+L+ V +A + + ++FE G ++Y+ NL +D+ +L
Sbjct: 309 NGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 368
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
FS G + +V+ +E G+S+GFG + SS + A+ ++G+ L + + + +A+
Sbjct: 369 NEFSSFGSISRVKVM--QEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 188 (71.2 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 45/177 (25%), Positives = 92/177 (51%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+F+ NL +D++ L F G + ++V+ + S+G+ FV A++A+E
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ + G + V + R + +Y+ N ++D+ RL+ VFS++GK +
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 275
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
+ +V+ D +G+S+GFGFV+ S A+ ++G++++G+ I V A+ + R +
Sbjct: 276 SVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 331
Score = 162 (62.1 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 48/180 (26%), Positives = 93/180 (51%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+L DV + L F G V + ++ T RS G+ +V + +A+KA++
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ +DI + + R +R + G +++ NL +DN L + FS G
Sbjct: 128 TMN-FDI------IKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG 180
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 338
K+++++V+ D + G S+G+ FV +++ + AI ++G+ L G + V ++R+ R +
Sbjct: 181 KILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREA 238
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 212 (79.7 bits), Expect = 9.3e-17, P = 9.3e-17
Identities = 50/174 (28%), Positives = 85/174 (48%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT S+V E + A++
Sbjct: 39 KLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDA 98
Query: 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 280
+ +DGR + +A R + P +++VG + + D L + F + GK+
Sbjct: 99 -RPHKVDGRAVEPKRAVSR--EDSSKPGAHSTVKKMFVGGIKEDTDEEHLREYFGQFGKI 155
Query: 281 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++ ++ + + RGF F+T + D I ++G V A R+
Sbjct: 156 DEVNIMTEKNSDKRRGFAFITFDDHDAV-DRIVIQKYHTVNGHNCEVRKALSRE 208
Score = 130 (50.8 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 33/97 (34%), Positives = 53/97 (54%)
Query: 241 TQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFV 300
++ ++ PR E ++++G L +E + L F + G + + V+ D T RSRGFGFV
Sbjct: 25 SKEQQTPREPEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFV 84
Query: 301 TMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
T SS E++ A+ A +DGRA+ A R+ S
Sbjct: 85 TYSSVGEVDAAMDARP-HKVDGRAVEPKRAVSREDSS 120
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 217 (81.4 bits), Expect = 9.5e-17, P = 9.5e-17
Identities = 50/172 (29%), Positives = 94/172 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L + NL Y E L +FEKA +++ + + +S+G+ F+ ++ E+A++A+
Sbjct: 498 LVLSNLSYSATEETLQEVFEKATHIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSC 553
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
++ +I+GR + + PRG+ R+ +P ++V L + L++ F G +
Sbjct: 554 NKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFD--GSI- 606
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
AR+V DRETG S+GFGFV +SE + A A++ +DG + ++ A+ +
Sbjct: 607 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 658
Score = 164 (62.8 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 50/180 (27%), Positives = 92/180 (51%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
DA+ L NLPY V ++L +FE A VEI V + +S+G ++ T +AEK
Sbjct: 401 DARTLLAKNLPYKVTQDELKEVFEDA--VEIRLV---SKDGKSKGIAYIEFKTEADAEKT 455
Query: 218 VEMFHRYDIDGRLLTVNKAAPRG-TQPERAPR--VFEPGFRIYV-GNLPWEVDNARLEQV 273
+E +IDGR +++ +G +Q R + + + V NL + L++V
Sbjct: 456 LEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEV 515
Query: 274 FSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
F K + +V + + G+S+G+ F+ +S + +A+ + + + ++GRAIR+ + R
Sbjct: 516 FE---KATHIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 571
Score = 133 (51.9 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 44/168 (26%), Positives = 80/168 (47%)
Query: 162 LFVGNLPYDVDSEKLAM----LFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
LFVGNL ++ + +L LF K + + +V SR FG+V + E+ EKA
Sbjct: 319 LFVGNLNFNKSAPELKTGISDLFAK-NDLAVVDV----RIGVSRKFGYVDFESAEDLEKA 373
Query: 218 VEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEH 277
+E+ + G + + K + ++ +R R + NLP++V L++VF +
Sbjct: 374 LELTG-LKVFGNEIKLEKPKGKDSKKDRDART------LLAKNLPYKVTQDELKEVFED- 425
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 325
V R+V + G+S+G ++ +E + + G +DGR+I
Sbjct: 426 --AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSI 469
Score = 125 (49.1 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFV L D E L F+ G++ A ++ +RET S+GFGFV ++ E+A+ A E
Sbjct: 584 LFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 640
Query: 222 HRYDIDGRLLTVNKAAPRG 240
+IDG +T++ A P+G
Sbjct: 641 EDGEIDGNKVTLDWAKPKG 659
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 215 (80.7 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 51/172 (29%), Positives = 94/172 (54%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L + NL Y E L +FEKA +++ + + + S+G+ F+ ++ E+A++A+
Sbjct: 345 LVLSNLSYSATEETLQEVFEKATFIKVPQNPHGK----SKGYAFIEFASFEDAKEALNSC 400
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
++ +I+GR + + PRG+ R+ +P ++V L + L++ F G V
Sbjct: 401 NKMEIEGRTIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFE--GSV- 453
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
AR+V DRETG S+GFGFV +SE + A A++ +DG + ++ A+ +
Sbjct: 454 RARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAMEDGEIDGNKVTLDWAKPK 505
Score = 142 (55.0 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 44/175 (25%), Positives = 85/175 (48%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
L NL +++ ++L +FE A VEI V + RS+G ++ + +AEK +E
Sbjct: 253 LLAKNLSFNITEDELKEVFEDA--VEIRLV---SQDGRSKGIAYIEFKSEADAEKNLEEK 307
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPR--VFEPGFRIYV-GNLPWEVDNARLEQVFSEHG 278
+IDGR +++ +G + ER + + + V NL + L++VF
Sbjct: 308 QGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFE--- 364
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
K +V + G+S+G+ F+ +S + +A+ + + ++GR IR+ + R
Sbjct: 365 KATFIKVPQNPH-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPR 418
Score = 140 (54.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 45/175 (25%), Positives = 83/175 (47%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LF+GNL V K+A + + ++A V + T +R FG+V + E+ EKA+E+
Sbjct: 169 LFIGNLNKSVAELKVA-ISDLFAKNDLAAV--DVRTGTNRKFGYVDFESAEDLEKALELT 225
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281
+ G + + K R ++ RA R + NL + + L++VF + V
Sbjct: 226 G-LKVFGNEIKLEKPKGRDSKKVRAART------LLAKNLSFNITEDELKEVFED---AV 275
Query: 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
R+V + GRS+G ++ SE + + G +DGR++ + ++ +R
Sbjct: 276 EIRLV--SQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQR 328
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
LFV L D E L FE G+V A ++ +RET S+GFGFV ++ E+A+ A E
Sbjct: 431 LFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAM 487
Query: 222 HRYDIDGRLLTVNKAAPRG 240
+IDG +T++ A P+G
Sbjct: 488 EDGEIDGNKVTLDWAKPKG 506
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 211 (79.3 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 54/173 (31%), Positives = 91/173 (52%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA ++VG L V L LF +AG V + +R T + +G+GFV + E+A+ A+
Sbjct: 12 DAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
++ + + G+ + VNKA+ + G I++GNL E+D L FS G
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKN-------LDVGANIFIGNLDPEIDEKLLYDTFSAFG 124
Query: 279 KVVNA-RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
++ +++ D +TG S+G+ F+ +S + AI A++GQ L R I V+ A
Sbjct: 125 VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 210 (79.0 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 53/177 (29%), Positives = 91/177 (51%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
D K L++G+L +D + +F ++G A+VI N+ T +S G+GF+ + AE+
Sbjct: 58 DVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERV 117
Query: 218 VEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE- 276
++ ++ + T + E+ + P I+VG+L EV + L F
Sbjct: 118 LQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNV 177
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
+G V A+VV DR TGRS+G+GFV + E E A+ ++GQ R +R+ A ++
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANK 234
Score = 153 (58.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 51/193 (26%), Positives = 98/193 (50%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKA-GTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
D +FVG+L +V L+ F+ G+V+ A+V+ +R T RS+G+GFV + E +A
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 218 V-EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE-----------PG-FRIYVGNLPWE 264
+ EM +Y R + + AA + P + P +++ P I+VG L
Sbjct: 213 MTEMNGQY-CSTRPMRIGPAANKNALPMQ-PAMYQNTQGANAGDNDPNNTTIFVGGLDAN 270
Query: 265 VDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA 324
V + L+ +F + G++++ ++ G+ GFV +++ A++ L+G L G++
Sbjct: 271 VTDDELKSIFGQFGELLHVKI----PPGKR--CGFVQYANKASAEHALSVLNGTQLGGQS 324
Query: 325 IRVNVAEDRQRRS 337
IR++ ++S
Sbjct: 325 IRLSWGRSPNKQS 337
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 211 (79.3 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 54/173 (31%), Positives = 91/173 (52%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA ++VG L V L LF +AG V + +R T + +G+GFV + E+A+ A+
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
++ + + G+ + VNKA+ + G I++GNL E+D L FS G
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKN-------LDVGANIFIGNLDPEIDEKLLYDTFSAFG 124
Query: 279 KVVNA-RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
++ +++ D +TG S+G+ F+ +S + AI A++GQ L R I V+ A
Sbjct: 125 VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 210 (79.0 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 57/179 (31%), Positives = 92/179 (51%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA ++VG L V L L +AG V + +R T +GFGFV E+A+ A+
Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
++ + + G+ + VNKA+ + + G I+VGNL EVD L FS G
Sbjct: 72 KILNMIKLYGKPIKVNKASAH-------EKNMDVGANIFVGNLDPEVDEKLLYDTFSAFG 124
Query: 279 KVVNA-RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
++ +++ D ++G S+GF F+ +S + A+ A++GQ L RAI V+ A R +
Sbjct: 125 VILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSK 183
Score = 114 (45.2 bits), Expect = 0.00051, P = 0.00051
Identities = 33/118 (27%), Positives = 60/118 (50%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV-EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
A +FVGNL +VD + L F G + ++ +++ + ++ S+GF F+ ++ E ++ A+
Sbjct: 100 ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
E + + R +TV+ A R ++ ER E R+ P R QVFS+
Sbjct: 160 EAMNGQFLCNRAITVSYAFKRDSKGERHGTAAE---RMLAAQNPL-FPKDRPHQVFSD 213
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 210 (79.0 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 57/179 (31%), Positives = 92/179 (51%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA ++VG L V L L +AG V + +R T +GFGFV E+A+ A+
Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
++ + + G+ + VNKA+ + + G I+VGNL EVD L FS G
Sbjct: 72 KILNMIKLYGKPIKVNKASAH-------EKNMDVGANIFVGNLDPEVDEKLLYDTFSAFG 124
Query: 279 KVVNA-RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
++ +++ D ++G S+GF F+ +S + A+ A++GQ L RAI V+ A R +
Sbjct: 125 VILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSK 183
Score = 114 (45.2 bits), Expect = 0.00051, P = 0.00051
Identities = 33/118 (27%), Positives = 60/118 (50%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV-EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
A +FVGNL +VD + L F G + ++ +++ + ++ S+GF F+ ++ E ++ A+
Sbjct: 100 ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
E + + R +TV+ A R ++ ER E R+ P R QVFS+
Sbjct: 160 EAMNGQFLCNRAITVSYAFKRDSKGERHGTAAE---RMLAAQNPL-FPKDRPHQVFSD 213
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 211 (79.3 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 54/173 (31%), Positives = 91/173 (52%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA ++VG L V L LF +AG V + +R T + +G+GFV + E+A+ A+
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
++ + + G+ + VNKA+ + G I++GNL E+D L FS G
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKN-------LDVGANIFIGNLDPEIDEKLLYDTFSAFG 124
Query: 279 KVVNA-RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
++ +++ D +TG S+G+ F+ +S + AI A++GQ L R I V+ A
Sbjct: 125 VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 211 (79.3 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 54/173 (31%), Positives = 91/173 (52%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA ++VG L V L LF +AG V + +R T + +G+GFV + E+A+ A+
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
++ + + G+ + VNKA+ + G I++GNL E+D L FS G
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKN-------LDVGANIFIGNLDPEIDEKLLYDTFSAFG 124
Query: 279 KVVNA-RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
++ +++ D +TG S+G+ F+ +S + AI A++GQ L R I V+ A
Sbjct: 125 VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 211 (79.3 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 54/173 (31%), Positives = 91/173 (52%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA ++VG L V L LF +AG V + +R T + +G+GFV + E+A+ A+
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
++ + + G+ + VNKA+ + G I++GNL E+D L FS G
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKN-------LDVGANIFIGNLDPEIDEKLLYDTFSAFG 124
Query: 279 KVVNA-RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
++ +++ D +TG S+G+ F+ +S + AI A++GQ L R I V+ A
Sbjct: 125 VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 211 (79.3 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 54/173 (31%), Positives = 91/173 (52%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA ++VG L V L LF +AG V + +R T + +G+GFV + E+A+ A+
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 278
++ + + G+ + VNKA+ + G I++GNL E+D L FS G
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKN-------LDVGANIFIGNLDPEIDEKLLYDTFSAFG 124
Query: 279 KVVNA-RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
++ +++ D +TG S+G+ F+ +S + AI A++GQ L R I V+ A
Sbjct: 125 VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
WARNING: HSPs involving 1212 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.375 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 339 273 0.0010 114 3 11 23 0.40 34
32 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1462
No. of states in DFA: 578 (61 KB)
Total size of DFA: 175 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.66u 0.10s 19.76t Elapsed: 00:00:00
Total cpu time: 19.71u 0.10s 19.81t Elapsed: 00:00:01
Start: Mon May 20 17:41:12 2013 End: Mon May 20 17:41:13 2013
WARNINGS ISSUED: 2