BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019542
(339 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 352 bits (904), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 204/342 (59%), Positives = 244/342 (71%), Gaps = 19/342 (5%)
Query: 2 SSSTASVLKPLSSMADSTS--LLSPPSIFARNPYFSIHPRPRPIKLHLSDSSLSSKGFSF 59
SS S LKPL+ MADS+S + S PSI + I + + LS S
Sbjct: 3 SSIVTSSLKPLA-MADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVSL 61
Query: 60 KLKKTTHF--SSFTTFVAQTSDWADQEEDKDNTTITLEQEQEENGEEEPNWENQGADETE 117
LK TH S F +FVAQTSDWA E+ ++ +E E E + E+Q D +E
Sbjct: 62 SLKTKTHLKKSPFVSFVAQTSDWA---EEGGEGSVAVE-------ETENSLESQ--DVSE 109
Query: 118 GNLSDWGEPEGEDTVVEAGERQEESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVDSEKLA 177
G+ S+ EG+ V E E + + E V E EF EP E+AKLFVGNL YDV+S+ LA
Sbjct: 110 GDESEGDASEGD--VSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALA 167
Query: 178 MLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237
MLFE+AGTVEIAEVIYNRETD+SRGFGFVTMS+V+EAE AVE F+RYD++GRLLTVNKAA
Sbjct: 168 MLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAA 227
Query: 238 PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGF 297
PRG++PERAPRV+EP FR+YVGNLPW+VDN RLEQ+FSEHGKVV ARVVYDRETGRSRGF
Sbjct: 228 PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGF 287
Query: 298 GFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 339
GFVTMS ELN+AI+ALDGQNL+GRAIRVNVAE+R R +
Sbjct: 288 GFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRGY 329
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 322 bits (824), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 179/329 (54%), Positives = 224/329 (68%), Gaps = 57/329 (17%)
Query: 15 MADSTSLLSPPSIFARNPYFSIHP----RPRPIKLHLSDSSLSSKGFSFKLKKTTHFSSF 70
MA + L+S P F S +P + +PI L S +L S K+TT F +F
Sbjct: 1 MATNGCLISLPPFFTTTKSISSYPFLSTQLKPISLSSSLPTLLSLN-----KRTTQFPTF 55
Query: 71 TTFVAQTSDWADQEEDKDNTTITLEQEQEENGEEEPNWENQGADETEGNLSDWGEPEGED 130
+ +++ DNT + +QEQ G + P++
Sbjct: 56 VSVLSE----------DDNTLVLDDQEQ---GGDFPSF---------------------- 80
Query: 131 TVVEAGERQEESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAE 190
V EAGE EE+ EP EDAKLFVGNLPYD+DSE LA LF++AG VEIAE
Sbjct: 81 -VGEAGE------------TEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAE 127
Query: 191 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 250
VIYNRETDRSRGFGFVTMSTVEEA+KAVE++ +YD++GRLLTVNKAAPRG++PERAPR F
Sbjct: 128 VIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTF 187
Query: 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 310
+P +RIYVGN+PW++D+ARLEQVFSEHGKVV+ARVV+DRE+GRSRGFGFVTMSSE E+++
Sbjct: 188 QPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSE 247
Query: 311 AIAALDGQNLDGRAIRVNVAEDRQRRSSF 339
AIA LDGQ LDGR IRVN AE+R RR+++
Sbjct: 248 AIANLDGQTLDGRTIRVNAAEERPRRNTY 276
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 317 bits (813), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 167/231 (72%), Positives = 189/231 (81%), Gaps = 7/231 (3%)
Query: 108 WENQGADETEGNLSDWGEPEGEDTVVEAGERQEESGEEGVFEEEEFVEPPEDAKLFVGNL 167
WE +G+ T L +PEG V G + S E GV + F EPPE+AKLFVGNL
Sbjct: 8 WEQEGS--TNAVLEGESDPEG---AVSWGSETQVSDEGGVEGGQGFSEPPEEAKLFVGNL 62
Query: 168 PYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDID 227
PYDVDSEKLA +F+ AG VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE+ + YD+D
Sbjct: 63 PYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMD 122
Query: 228 GRLLTVNKAAPRGTQPERAPRV-FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVV 286
GR LTVNKAAPRG+ PERAPR FEP R+YVGNLPW+VD +RLEQ+FSEHGKVV+ARVV
Sbjct: 123 GRQLTVNKAAPRGS-PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVV 181
Query: 287 YDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
DRETGRSRGFGFVTMSSE+E+NDAIAALDGQ LDGRA+RVNVAE+R RR+
Sbjct: 182 SDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRRA 232
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 317 bits (811), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 198/347 (57%), Positives = 240/347 (69%), Gaps = 40/347 (11%)
Query: 1 MSSSTASVLKPLSSMADSTSLLSPPSIFARN--------PYFSIHPRPRPIKLHLSDSSL 52
MS +T ++KP SSMA ++ L+S P +FA PY S +P + LHLS
Sbjct: 1 MSCATKPIIKP-SSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKL-LHLS---- 54
Query: 53 SSKGFSFKLKKTTHFSSFTTFVAQTSDWADQEEDKDNTTITLEQEQEENGEEEPNWENQG 112
T+ + +TS A QEE+ T+ L+ + +E+G+ N+E G
Sbjct: 55 -----------CTYSPCILSPKKKTSVSALQEEEN---TLILDGQGQESGDLF-NFEPSG 99
Query: 113 ADETEGNLSDWGEPEGEDTVVEAGERQEESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVD 172
+ E E V G+ E E EEEEF EPPEDAKLFVGNLPYDVD
Sbjct: 100 EETEE-----------EGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVD 148
Query: 173 SEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232
SE LA LFE+AG VEIAEVIYNR+TD+SRGFGFVTMSTVEEAEKAVEM++RYD++GRLLT
Sbjct: 149 SEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLT 208
Query: 233 VNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETG 292
VNKAA RG +PER PR FE +RIYVGN+PW +D+ARLEQ+FSEHGKVV+ARVVYDRETG
Sbjct: 209 VNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETG 268
Query: 293 RSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 339
RSRGFGFVTM+SE E++DAIA LDGQ+LDGR IRVNVAEDR RR++F
Sbjct: 269 RSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRNTF 315
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 146/228 (64%), Gaps = 29/228 (12%)
Query: 138 RQEESGEEGVFEEEEFVEPP---EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYN 194
R SG + + ++ E E P ED KLFVGNLP+ VDS LA LFE+AG VE+ EVIY+
Sbjct: 62 RVALSGFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYD 121
Query: 195 RETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA-AP-----------RGTQ 242
+ T RSRGFGFVTMST EE E A + F+ Y+IDGR + VN AP RG
Sbjct: 122 KLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGN 181
Query: 243 PE--------------RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYD 288
R R + R+YVGNL W VD+ L+++FSE G VV+A+VVYD
Sbjct: 182 SSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYD 241
Query: 289 RETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
R++GRSRGFGFVT SS E+NDAI +L+G +LDGR+IRV+ AE+R RR
Sbjct: 242 RDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPRR 289
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 3/95 (3%)
Query: 247 PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 306
PR F +++VGNLP+ VD+A L +F G V V+YD+ TGRSRGFGFVTMS++
Sbjct: 81 PR-FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKE 139
Query: 307 ELNDAIAALDGQNLDGRAIRVNV--AEDRQRRSSF 339
E+ A +G +DGRAIRVN A ++ SSF
Sbjct: 140 EVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 174
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 202 bits (515), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 141/217 (64%), Gaps = 29/217 (13%)
Query: 149 EEEEFVEPP---EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGF 205
++ E E P ED KLFVGNLP+ VDS LA LFE+AG VEI EVIY++ + RSRGFGF
Sbjct: 74 DDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGF 133
Query: 206 VTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA-AP-----------RGTQPE--------- 244
VTMST EE E A + F+ Y+IDGR + VN AP RG
Sbjct: 134 VTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNS 193
Query: 245 -----RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 299
R R + R+YVGNL W VD+ L+++FSE G VV+A+VVYDR++GRSRGFGF
Sbjct: 194 SFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGF 253
Query: 300 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
VT SS E+NDAI +L+G +LDGR+IRV+ AE+R RR
Sbjct: 254 VTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRR 290
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 61/95 (64%), Gaps = 3/95 (3%)
Query: 247 PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 306
PR F +++VGNLP+ VD+A L +F G V V+YD+ +GRSRGFGFVTMS++
Sbjct: 82 PR-FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKE 140
Query: 307 ELNDAIAALDGQNLDGRAIRVNV--AEDRQRRSSF 339
E+ A +G +DGRAIRVN A ++ SSF
Sbjct: 141 EVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 175
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 201 bits (512), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/210 (53%), Positives = 139/210 (66%), Gaps = 18/210 (8%)
Query: 141 ESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRS 200
E G++GV EE F D K+FVGNLP+ DS LA LFE+AG VE+ EVIY++ T RS
Sbjct: 71 EDGDDGVEEERNF---SPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRS 127
Query: 201 RGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF------ 254
RGFGFVTMS+ EE E A + F+ Y++DGR L VN P PE+ G
Sbjct: 128 RGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPP----PEKRENSSFRGGSRGGGS 183
Query: 255 -----RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 309
R+YVGNL W VD LE +FSE GKVV+A+VVYDR++GRSRGFGFVT SS E+N
Sbjct: 184 FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 243
Query: 310 DAIAALDGQNLDGRAIRVNVAEDRQRRSSF 339
+AI +LDG +L+GRAIRV+ AE R R F
Sbjct: 244 NAIESLDGVDLNGRAIRVSPAEARPPRRQF 273
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 137/218 (62%), Gaps = 27/218 (12%)
Query: 149 EEEEF--VEPPE------DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRS 200
EE+ F V PP+ D KLFVGNLP++VDS +LA LFE AG VE+ EVIY++ T RS
Sbjct: 72 EEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRS 131
Query: 201 RGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP---RGTQPERAPRVFEPGF--- 254
RGFGFVTMS+V E E A + F+ Y++DGR L VN P R R PR
Sbjct: 132 RGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSG 191
Query: 255 -------------RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVT 301
R+YVGNL W VD+ LE +FSE GKVV ARV+YDR++GRS+GFGFVT
Sbjct: 192 YGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVT 251
Query: 302 MSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 339
S E+ +AI +LDG +LDGR IRV+ AE R R +
Sbjct: 252 YDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 130/194 (67%), Gaps = 13/194 (6%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
D K+FVGNL + DS LA LFE+AG VE+ EVIY++ T RSRGFGFVTMS+ EE E A
Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAAC 145
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPERAPR-------------VFEPGFRIYVGNLPWEV 265
+ F+ Y++DGR L VN P + + R F+ R+YVGNL W V
Sbjct: 146 QQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGV 205
Query: 266 DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 325
D LE +FSE GKVV+A+VVYDR++GRSRGFGFVT SS E+N+AI +LDG +L+GRAI
Sbjct: 206 DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAI 265
Query: 326 RVNVAEDRQRRSSF 339
RV+ AE R R F
Sbjct: 266 RVSPAEARPPRRQF 279
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 117/188 (62%), Gaps = 9/188 (4%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
+L+VGNLP+ + S +L+ +F +AGTV E++Y+R TDRSRGF FVTM +VEEA++A+
Sbjct: 114 GRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIR 173
Query: 220 MFHRYDIDGRLLTVN-KAAPRGTQPERAP---RVFEPGF-----RIYVGNLPWEVDNARL 270
+F + GR + VN PRG + E R GF ++YV NL W + + L
Sbjct: 174 LFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGL 233
Query: 271 EQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
F++ ++A+V+YDR +GRSRGFGF+T SS +N A+ ++ L+GR +R+NVA
Sbjct: 234 RDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293
Query: 331 EDRQRRSS 338
+ SS
Sbjct: 294 GQKAPVSS 301
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G R+YVGNLP+ + +++L ++F+E G V N +VYDR T RSRGF FVTM S E +AI
Sbjct: 113 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 172
Query: 313 AALDGQNLDGRAIRVNVAE 331
DG + GR ++VN E
Sbjct: 173 RLFDGSQVGGRTVKVNFPE 191
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 110/177 (62%), Gaps = 8/177 (4%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
+L+VGN+P ++++++L + E+ G +EIAEV+Y++ + RSR FGFVTM TVE+A +E
Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144
Query: 221 FHRYDIDGRLLTVNKAAP-------RGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQV 273
+ +I GR + VN TQ E + V P +++Y+GNL V N L+
Sbjct: 145 LNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESP-YKVYIGNLAKTVTNELLKDF 203
Query: 274 FSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330
FSE GKV+ A+V T +S GFGFV+ SSE E+ AI AL+ L+G+ IRVN A
Sbjct: 204 FSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314
R+YVGN+P ++N L + EHG + A V+YD+ +GRSR FGFVTM + + N I
Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144
Query: 315 LDGQNLDGRAIRVNVAE 331
L+ + GR I+VN+ E
Sbjct: 145 LNDTEIGGRKIKVNITE 161
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 103/185 (55%), Gaps = 7/185 (3%)
Query: 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEA 214
E E A +FVG L + +D E L FE G V A VIY R TDRSRG+G+V A
Sbjct: 163 ETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYA 222
Query: 215 EKAVEMFHRYDIDGRLLTVN--KAAPRGTQPERAPRV----FEPGFRIYVGNLPWEVDNA 268
EKA++ +IDGR + + + P G +RA + EP +++GNL + D
Sbjct: 223 EKAIQEMQGKEIDGRPINCDMSTSKPAGNN-DRAKKFGDTPSEPSDTLFLGNLSFNADRD 281
Query: 269 RLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328
+ ++F++HG+VV+ R+ ET + +GFG+V S+ + A+ AL G+ +D R +R++
Sbjct: 282 AIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD 341
Query: 329 VAEDR 333
+ R
Sbjct: 342 FSSPR 346
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 65/85 (76%)
Query: 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314
R+YVGNL W VD+ LE +F+E GKVV ARV+YDR++GRS+GFGFVT+SS E+ AI +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 315 LDGQNLDGRAIRVNVAEDRQRRSSF 339
L+G +LDGR IRV+ AE R R F
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRGQF 342
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
D KLFVGNL ++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVTMST E E A
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAA 157
Query: 219 EMFHRYDIDGRLLTVNKAAPRGTQPE---RAPR 248
+ F+ Y+ +GR L VN P + E R PR
Sbjct: 158 QQFNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 54/87 (62%)
Query: 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 309
F P +++VGNL + VD+A+L Q+F G V V+YD+ TGRSRGFGFVTMS+ E+
Sbjct: 95 FSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Query: 310 DAIAALDGQNLDGRAIRVNVAEDRQRR 336
A +G +GR +RVN +R
Sbjct: 155 AAAQQFNGYEFEGRPLRVNAGPPPPKR 181
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 56/83 (67%), Gaps = 3/83 (3%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
+L+VGNL + VD L LF + G V A VIY+R++ RS+GFGFVT+S+ +E +KA+
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 221 FHRYDIDGRLLTVNKA---APRG 240
+ D+DGR + V++A PRG
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 106/196 (54%), Gaps = 17/196 (8%)
Query: 158 EDAKLF----VGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEE 213
E AKLF V N D D EKL FE G + +V+ ++E +S+GFGFV T E
Sbjct: 177 EKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEA 235
Query: 214 AEKAVEMFHRYDI-DGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLP 262
AE AV+ + D+ +G+ L V +A + + + R FE G +YV NL
Sbjct: 236 AEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLD 295
Query: 263 WEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG 322
+D+ RL FS +G + +A+V+ D E GRS+GFGFV ++ +E A+ L+G+ +
Sbjct: 296 DTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVGS 354
Query: 323 RAIRVNVAEDRQRRSS 338
+ + V +A+ ++ R +
Sbjct: 355 KPLYVALAQRKEERKA 370
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
A L+VG+LP DV+ L F AG V V + T RS G+ +V +AE+A++
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHG 278
+ +D+ V R +R P + G +++ NL +DN + FS G
Sbjct: 62 TMN-FDL------VRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFG 114
Query: 279 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336
+++ +V D E G S+G+GFV +E N +I ++G L+G+ + V R+ R
Sbjct: 115 NILSCKVATD-EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKER 171
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 13/192 (6%)
Query: 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
E ++V NLP DVD + L LF + G + +V+ + + SR FGFV EEA+KA
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKA 247
Query: 218 VEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDN 267
V + ++ GRLL +A R + R FE G +YV NL +D+
Sbjct: 248 VVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDD 307
Query: 268 ARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 327
+L + FS +G + +A+V+ E G S+GFGFV SS E A+ ++G+ + + + V
Sbjct: 308 DKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Query: 328 NVAEDRQRRSSF 339
+A+ ++ R +
Sbjct: 366 ALAQRKEERKAI 377
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 16/181 (8%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK---AGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
A L+VG+L DV AML+EK AG + V + T RS G+ ++ +AE+
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFS 275
A++ + + G+ + + + +R P + + G I++ NL +DN L FS
Sbjct: 68 ALDTMNFEMLKGQPIRIMWS-------QRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFS 120
Query: 276 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 335
G +++ +V D E G SRGFGFV + AI ++G L+ R + V + R+
Sbjct: 121 TFGNILSCKVACD-EHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 336 R 336
R
Sbjct: 179 R 179
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 13/183 (7%)
Query: 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
E K+F+G L +D + L F K GTV +++ + T RSRGFGF++ ++
Sbjct: 157 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEV 216
Query: 218 VEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEH 277
V+ H +DG+++ +A PR Q + +I+VG + +V E+ FS+
Sbjct: 217 VKTQHI--LDGKVIDPKRAIPRDEQDKTG--------KIFVGGIGPDVRPKEFEEFFSQW 266
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR--QR 335
G +++A+++ D++TG+SRGFGFVT S + D + + R I + AE R Q+
Sbjct: 267 GTIIDAQLMLDKDTGQSRGFGFVTYDSADAV-DRVCQNKFIDFKDRKIEIKRAEPRHMQQ 325
Query: 336 RSS 338
+SS
Sbjct: 326 KSS 328
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314
+++VG L W D++ L+Q F+ G+V A V+ DRETGRSRGFGFV+ S E N+AI
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 315 LDGQNLDGRAIRVNVAEDRQR--RSSF 339
+DG+ L+GR IRVN+A +R RSSF
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRSSF 122
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 47/84 (55%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
+KLFVG L + D L F G V A VI +RET RSRGFGFV+ S + A A++
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 220 MFHRYDIDGRLLTVNKAAPRGTQP 243
+++GR + VN A R + P
Sbjct: 95 EMDGKELNGRQIRVNLATERSSAP 118
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 58/78 (74%)
Query: 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313
+R +VG L W D+ LE FS++G+V++++++ DRETGRSRGFGFVT E + DAI
Sbjct: 8 YRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67
Query: 314 ALDGQNLDGRAIRVNVAE 331
++GQ+LDGR+I VN A+
Sbjct: 68 GMNGQDLDGRSITVNEAQ 85
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAE 215
P + + FVG L + D L F + G V +++I +RET RSRGFGFVT + +
Sbjct: 4 PDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMK 63
Query: 216 KAVEMFHRYDIDGRLLTVNKA 236
A+E + D+DGR +TVN+A
Sbjct: 64 DAIEGMNGQDLDGRSITVNEA 84
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 102/192 (53%), Gaps = 13/192 (6%)
Query: 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
E +++ N D+D ++L +F G +V+ + +T RSRGFGFV EEA+KA
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKA 247
Query: 218 VEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDN 267
V + +++GR++ V +A R + R FE G +YV NL +D+
Sbjct: 248 VSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 268 ARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 327
RL + FS +G + +A+V+ E G S+GFGFV SS E A+ ++G+ + + + V
Sbjct: 308 DRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Query: 328 NVAEDRQRRSSF 339
+A+ ++ R +
Sbjct: 366 ALAQRKEERKAI 377
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 16/181 (8%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK---AGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
A L+VG+L DV AML+EK AG + V + T RS G+ ++ +AE+
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFS 275
A++ + I GR + + + +R P + + G +++ NL +DN L FS
Sbjct: 68 ALDTMNFEVIKGRPIRIMWS-------QRDPGLRKSGVGNVFIKNLDESIDNKALYDTFS 120
Query: 276 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 335
G +++ +VV D E G SRG+GFV ++ N AI ++G L+ R + V + R+
Sbjct: 121 AFGNILSCKVVCD-EHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRE 178
Query: 336 R 336
R
Sbjct: 179 R 179
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 132 VVEAGERQEESGE-EGVFEE--EEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEI 188
V A +R E GE + FE+ +E + + L+V NL +D ++L F GT+
Sbjct: 263 VGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITS 322
Query: 189 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232
A+V+ E S+GFGFV S+ EEA KAV +++GR+++
Sbjct: 323 AKVM--TEGGHSKGFGFVCFSSPEEATKAVT-----EMNGRIVS 359
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 8/177 (4%)
Query: 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
E KLFVG L ++ E L+ F + G + V+ N E+ RSRGFGFVT +
Sbjct: 5 ERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHV 64
Query: 218 VEMFHRYDIDGRLLTVNKAAPRGTQ-PERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276
++ + +DGR + PR Q P++ G+++++G LP V L F+
Sbjct: 65 LQN-GPHTLDGRTIDPKPCNPRTLQKPKKGG-----GYKVFLGGLPSNVTETDLRTFFNR 118
Query: 277 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
+GKV ++YD+E +SRGFGF++ E+ + + + NL+G+ + + AE R
Sbjct: 119 YGKVTEVVIMYDQEKKKSRGFGFLSFEEESSV-EHVTNERYINLNGKQVEIKKAEPR 174
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 60/81 (74%)
Query: 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313
+R +VG L W D+ L+ FS++G V++++++ DRETGRSRGFGFVT +S+ + AI
Sbjct: 6 YRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE 65
Query: 314 ALDGQNLDGRAIRVNVAEDRQ 334
A++GQ+LDGR I VN A+ R+
Sbjct: 66 AMNGQDLDGRNITVNEAQSRR 86
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
+ FVG L + D + L F K G V +++I +RET RSRGFGFVT ++ E +A+E
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 221 FHRYDIDGRLLTVNKAAPR 239
+ D+DGR +TVN+A R
Sbjct: 67 MNGQDLDGRNITVNEAQSR 85
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7
PE=1 SV=1
Length = 176
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 57/78 (73%)
Query: 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313
+R +VG L W D+ LE F+++G V++++++ DRETGRSRGFGFVT E + DAI
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 314 ALDGQNLDGRAIRVNVAE 331
++GQ+LDGR+I VN A+
Sbjct: 68 GMNGQDLDGRSITVNEAQ 85
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
+ FVG L + D L F + G V +++I +RET RSRGFGFVT + + A+E
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 221 FHRYDIDGRLLTVNKA 236
+ D+DGR +TVN+A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 57/78 (73%)
Query: 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313
+R +VG L W +N LEQ F+ G+V++++V+ DRETGRSRGFGFVT SSE + DAI
Sbjct: 8 YRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIE 67
Query: 314 ALDGQNLDGRAIRVNVAE 331
++G+ LDGR I VN A+
Sbjct: 68 NMNGKELDGRNITVNQAQ 85
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
+ FVG L + ++E L F G V ++VI +RET RSRGFGFVT S+ + A+E
Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68
Query: 221 FHRYDIDGRLLTVNKA 236
+ ++DGR +TVN+A
Sbjct: 69 MNGKELDGRNITVNQA 84
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 148 FEEEEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVT 207
F ++ EP KLF+G L Y E L FEK G + V+ + T RSRGFGF+T
Sbjct: 19 FPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFIT 78
Query: 208 M---STVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWE 264
S ++EA+K+ + IDGR++ +A PR Q +P +++VG L +
Sbjct: 79 YSHSSMIDEAQKS----RPHKIDGRVVEPKRAVPR--QDIDSPNAGATVKKLFVGALKDD 132
Query: 265 VDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA 324
D + F G +V+ +V D+ETG+ RGF FV + D + L+G+
Sbjct: 133 HDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPV-DKVVLQKQHQLNGKM 191
Query: 325 IRVNVAEDRQ 334
+ V A +Q
Sbjct: 192 VDVKKALPKQ 201
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 10/167 (5%)
Query: 158 EDAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAE 215
ED+K L V LP ++ E+L LF G +E +++ ++ T +S G+GFV ++AE
Sbjct: 63 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 122
Query: 216 KAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFS 275
KA+ + + + + V+ A P A +YV LP + LEQ+FS
Sbjct: 123 KAINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFS 174
Query: 276 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG 322
++G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G
Sbjct: 175 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPG 221
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 98/225 (43%), Gaps = 47/225 (20%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
DA L+V LP + ++L LF + G + + ++ ++ T SRG GF+ EAE+A+
Sbjct: 152 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 211
Query: 219 EMFHRYDIDGRL--LTVNKA------------------------APRGTQPERAPRVFEP 252
+ + G +TV A P Q +R R F P
Sbjct: 212 KGLNGQKPPGATEPITVKFANNPSQKVNHTILSQLYQSPNRRYPGPLAQQAQRFSR-FSP 270
Query: 253 --------------------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETG 292
G+ I+V NL + D + L Q+F G V N +V+ D T
Sbjct: 271 MTIDGMTSLAGINFPGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTN 330
Query: 293 RSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337
+ +GFGFVTM++ E AIA+L+G L R ++V+ + ++
Sbjct: 331 KCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSKTHKA 375
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 256 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315
+ V LP + L+ +F G++ + ++V D+ TG+S G+GFV + AI L
Sbjct: 69 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 128
Query: 316 DGQNLDGRAIRVNVA 330
+G L + I+V+ A
Sbjct: 129 NGLRLQTKTIKVSYA 143
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 10/163 (6%)
Query: 158 EDAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAE 215
ED+K L V LP ++ E+L LF G +E +++ ++ T +S G+GFV ++AE
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 216 KAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFS 275
KA+ + + + + V+ A P A +YV LP + LEQ+FS
Sbjct: 95 KAINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFS 146
Query: 276 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ 318
++G+++ +R++ D+ TG SRG GF+ E +AI L+GQ
Sbjct: 147 QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 276 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 335
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ ++
Sbjct: 336 ASLNGYRLGDRVLQVSFKTNKTHKA 360
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L +F G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 222 HRYDIDGRLLTV 233
+ Y + R+L V
Sbjct: 339 NGYRLGDRVLQV 350
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 256 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315
+ V LP + L+ +F G++ + ++V D+ TG+S G+GFV + AI L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 316 DGQNLDGRAIRVNVA 330
+G L + I+V+ A
Sbjct: 101 NGLRLQTKTIKVSYA 115
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 12/185 (6%)
Query: 158 EDAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAE 215
+D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AE
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 216 KAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFS 275
KA+ + + + + V+ A P A +YV LP + LEQ+FS
Sbjct: 107 KAINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFS 158
Query: 276 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDR 333
++G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 159 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 218
Query: 334 QRRSS 338
++SS
Sbjct: 219 SQKSS 223
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 301 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 361 ASLNGYRLGDRVLQVSFKTNKAHKS 385
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 222 HRYDIDGRLLTV 233
+ Y + R+L V
Sbjct: 364 NGYRLGDRVLQV 375
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 10/163 (6%)
Query: 158 EDAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAE 215
ED+K L V LP ++ E+L LF G +E +++ ++ T +S G+GFV ++AE
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 216 KAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFS 275
KA+ + + + + V+ A P A +YV LP + LEQ+FS
Sbjct: 95 KAINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFS 146
Query: 276 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ 318
++G+++ +R++ D+ TG SRG GF+ E +AI L+GQ
Sbjct: 147 QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ ++
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHKA 359
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L +F G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 222 HRYDIDGRLLTV 233
+ Y + R+L V
Sbjct: 338 NGYRLGDRVLQV 349
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 256 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315
+ V LP + L+ +F G++ + ++V D+ TG+S G+GFV + AI L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 316 DGQNLDGRAIRVNVA 330
+G L + I+V+ A
Sbjct: 101 NGLRLQTKTIKVSYA 115
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 10/163 (6%)
Query: 158 EDAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAE 215
ED+K L V LP ++ E+L LF G +E +++ ++ T +S G+GFV ++AE
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 216 KAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFS 275
KA+ + + + + V+ A P A +YV LP + LEQ+FS
Sbjct: 95 KAINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFS 146
Query: 276 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ 318
++G+++ +R++ D+ TG SRG GF+ E +AI L+GQ
Sbjct: 147 QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ ++
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHKA 359
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L +F G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 222 HRYDIDGRLLTV 233
+ Y + R+L V
Sbjct: 338 NGYRLGDRVLQV 349
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 256 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315
+ V LP + L+ +F G++ + ++V D+ TG+S G+GFV + AI L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 316 DGQNLDGRAIRVNVA 330
+G L + I+V+ A
Sbjct: 101 NGLRLQTKTIKVSYA 115
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 12/185 (6%)
Query: 158 EDAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAE 215
+D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AE
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 216 KAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFS 275
KA+ + + + + V+ A P A +YV LP + LEQ+FS
Sbjct: 95 KAINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFS 146
Query: 276 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDR 333
++G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 147 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 206
Query: 334 QRRSS 338
++SS
Sbjct: 207 SQKSS 211
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 289 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 349 ASLNGYRLGDRVLQVSFKTNKAHKS 373
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 222 HRYDIDGRLLTV 233
+ Y + R+L V
Sbjct: 352 NGYRLGDRVLQV 363
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 12/185 (6%)
Query: 158 EDAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAE 215
+D+K L V LP ++ E+ LF G +E +++ ++ T +S G+GFV ++AE
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 216 KAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFS 275
KA+ + + + + V+ A P A +YV LP + LEQ+FS
Sbjct: 102 KAINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFS 153
Query: 276 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVAEDR 333
++G+++ +R++ D+ TG SRG GF+ E +AI L+GQ G I V A +
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 213
Query: 334 QRRSS 338
++SS
Sbjct: 214 SQKSS 218
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 296 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
Query: 313 AALDGQNLDGRAIRVNVAEDRQRRS 337
A+L+G L R ++V+ ++ +S
Sbjct: 356 ASLNGYRLGDRVLQVSFKTNKAHKS 380
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+FV NL D D L LF G V +VI + T++ +GFGFVTM+ +EA A+
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 222 HRYDIDGRLLTV 233
+ Y + R+L V
Sbjct: 359 NGYRLGDRVLQV 370
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 56/78 (71%)
Query: 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313
+R +VG L W D LE FS+ G++V+++++ DRETGRSRGFGFVT E + DAI
Sbjct: 8 YRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67
Query: 314 ALDGQNLDGRAIRVNVAE 331
++GQ+LDGR+I VN A+
Sbjct: 68 GMNGQDLDGRSITVNEAQ 85
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAE 215
P + + FVG L + D L F + G + +++I +RET RSRGFGFVT + +
Sbjct: 4 PDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMK 63
Query: 216 KAVEMFHRYDIDGRLLTVNKA 236
A+E + D+DGR +TVN+A
Sbjct: 64 DAIEGMNGQDLDGRSITVNEA 84
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 93/185 (50%), Gaps = 6/185 (3%)
Query: 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEA 214
EP + KLF+G L ++ + L FEK GT+ V+ + +T RSRGFGFVT S VEE
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 215 EKAVEMFHR-YDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQV 273
+ A M R + +DGR++ +A R + P +I+VG + + + L
Sbjct: 90 DAA--MCARPHKVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 274 FSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
F ++GK+ V+ DR++G+ RGF FVT + D I ++G V A +
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVVQKYHTINGHNCEVKKALSK 204
Query: 334 QRRSS 338
Q S
Sbjct: 205 QEMQS 209
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 93/185 (50%), Gaps = 6/185 (3%)
Query: 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEA 214
EP + KLF+G L ++ + L FEK GT+ V+ + +T RSRGFGFVT S VEE
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 215 EKAVEMFHR-YDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQV 273
+ A M R + +DGR++ +A R + P +I+VG + + + L
Sbjct: 90 DAA--MCARPHKVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 274 FSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
F ++GK+ V+ DR++G+ RGF FVT + D I ++G V A +
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVVQKYHTINGHNCEVKKALSK 204
Query: 334 QRRSS 338
Q S
Sbjct: 205 QEMQS 209
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 93/185 (50%), Gaps = 6/185 (3%)
Query: 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEA 214
EP + KLF+G L ++ + L FEK GT+ V+ + +T RSRGFGFVT S VEE
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 215 EKAVEMFHR-YDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQV 273
+ A M R + +DGR++ +A R + P +I+VG + + + L
Sbjct: 90 DAA--MCARPHKVDGRVVEPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 274 FSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333
F ++GK+ V+ DR++G+ RGF FVT + D I ++G V A +
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVVQKYHTINGHNCEVKKALSK 204
Query: 334 QRRSS 338
Q S
Sbjct: 205 QEMQS 209
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 91/191 (47%), Gaps = 13/191 (6%)
Query: 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
E KLFVG L + E L F + G V ++ ++ T++SRGFGFV
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGT 66
Query: 218 VEMFHRYDIDGRLLTVNKAAPRGTQPERA-PR----VFEP------GFRIYVGNLPWEVD 266
V + +DGR + PRG QPER+ PR EP +I+VG +P
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCG 126
Query: 267 NARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 326
L++ F+ G V ++YD E R RGFGF+T E ++ A+ + ++ G+ +
Sbjct: 127 ETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVE 185
Query: 327 VNVAEDRQRRS 337
V AE R +S
Sbjct: 186 VKRAEPRDSKS 196
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 145 EGVFEEEEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFG 204
EG ++E E K+FVG +P++ +L F + G V +IY+ E R RGFG
Sbjct: 99 EGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFG 158
Query: 205 FVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 239
F+T + ++AV M H +DI G+ + V +A PR
Sbjct: 159 FITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPR 192
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 83/151 (54%), Gaps = 10/151 (6%)
Query: 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
ED K+F+G L ++ + L FE+ G V V+ + T RSRGFGF+T + +
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 218 VEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEH 277
+ H +DG+++ +A PR Q + A +++VG +P + F++
Sbjct: 221 MSKEHH--LDGKIIDPKRAIPREEQEKTA--------KMFVGGVPGDCTEEEFRNFFNQF 270
Query: 278 GKVVNARVVYDRETGRSRGFGFVTMSSETEL 308
G+V++A ++ D++TGR RGFGFVT +E+ +
Sbjct: 271 GRVLDATLMMDKDTGRPRGFGFVTYENESAV 301
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314
++++G L WE + L F + G+V++ V+ D TGRSRGFGF+T + +N+ ++
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 315 ---LDGQNLD-GRAI 325
LDG+ +D RAI
Sbjct: 224 EHHLDGKIIDPKRAI 238
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 219
AK+FVG +P D E+ F + G V A ++ +++T R RGFGFVT E E AVE
Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY----ENESAVE 302
Query: 220 --MFHRY-DIDGRLLTVNKAAPRGT 241
M Y I G+ + V +A P+ +
Sbjct: 303 ATMSQPYITIHGKPVEVKRATPKAS 327
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 101/192 (52%), Gaps = 13/192 (6%)
Query: 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
E +++ N D+D ++L +F G +V+ + ++ RSRGFGFV EEA+KA
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKA 247
Query: 218 VEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDN 267
V + +++GR++ V +A R + R FE G +YV NL +D+
Sbjct: 248 VSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 268 ARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 327
RL + F +G + +A+V+ E G S+GFGFV SS E A+ ++G+ + + + V
Sbjct: 308 DRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Query: 328 NVAEDRQRRSSF 339
+A+ ++ R +
Sbjct: 366 ALAQRKEERKAI 377
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 16/181 (8%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK---AGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
A L++G+L DV AML+EK AG + V + T RS + ++ +AE+
Sbjct: 11 ASLYIGDLHPDVTE---AMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAER 67
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFS 275
A++ + I GR + + + +R P + + G +++ NL +DN L FS
Sbjct: 68 ALDTMNFEVIKGRPIRIMWS-------QRDPGLRKSGVGNVFIKNLDESIDNKALYDTFS 120
Query: 276 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 335
G +++ +VV D E G SRG+GFV + N AI ++G L+ R + V + R+
Sbjct: 121 AFGNILSCKVVCD-EHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRE 178
Query: 336 R 336
R
Sbjct: 179 R 179
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 137 ERQEESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRE 196
ERQ E + ++E + + L+V NL +D ++L F GT+ A+V+ E
Sbjct: 271 ERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TE 328
Query: 197 TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232
S+GFGFV S+ EEA KAV +++GR+++
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVT-----EMNGRIVS 359
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 56/78 (71%)
Query: 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313
+R +VG L W N LE F+ +G++++++V+ DRETGRSRGFGFVT SSE + DAI
Sbjct: 8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIE 67
Query: 314 ALDGQNLDGRAIRVNVAE 331
++G+ LDGR I VN A+
Sbjct: 68 NMNGKELDGRNITVNQAQ 85
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
+ FVG L + +E L F G + ++VI +RET RSRGFGFVT S+ A+E
Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68
Query: 221 FHRYDIDGRLLTVNKA 236
+ ++DGR +TVN+A
Sbjct: 69 MNGKELDGRNITVNQA 84
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 58/79 (73%)
Query: 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314
++++G + + +D L + F+++G+VV+ RV+ DRETGRSRGFGFVT +S + AI A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 315 LDGQNLDGRAIRVNVAEDR 333
LDG++L GR ++VN A DR
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%)
Query: 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEE 213
+ +KLF+G + Y +D + L F K G V VI +RET RSRGFGFVT ++ E
Sbjct: 34 IRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEA 93
Query: 214 AEKAVEMFHRYDIDGRLLTVNKAAPR 239
A A++ D+ GR++ VN A R
Sbjct: 94 ASSAIQALDGRDLHGRVVKVNYANDR 119
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 56/78 (71%)
Query: 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313
+R +VG L W +A LE+ FS+ G+V++++++ DRETGRSRGFGFVT E + DAI
Sbjct: 6 YRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAID 65
Query: 314 ALDGQNLDGRAIRVNVAE 331
++G+ LDGR I VN A+
Sbjct: 66 EMNGKELDGRTITVNEAQ 83
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
+ FVG L + +L F + G V +++I +RET RSRGFGFVT + + A++
Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66
Query: 221 FHRYDIDGRLLTVNKA 236
+ ++DGR +TVN+A
Sbjct: 67 MNGKELDGRTITVNEA 82
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 103/187 (55%), Gaps = 13/187 (6%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERQA 376
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 16/181 (8%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK---AGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
A L+VG+L DV AML+EK AG + V + T RS G+ +V +AE+
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFS 275
A++ + I G+ + + + +R P + + G I++ NL +DN L FS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWS-------QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 276 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 335
G +++ +VV D E G S+G+GFV ++ AI ++G L+ R + V + R+
Sbjct: 121 AFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Query: 336 R 336
R
Sbjct: 179 R 179
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 217
+ L+V NL +D E+L F GT+ A+V+ E RS+GFGFV S+ EEA KA
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 218 VEMFHRYDIDGRLLT 232
V +++GR++
Sbjct: 350 VT-----EMNGRIVA 359
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 311
P +YVG+L +V A L + FS G +++ RV D T RS G+ +V DA
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA---DA 65
Query: 312 IAALDGQNLD---GRAIRV 327
ALD N D G+ +R+
Sbjct: 66 ERALDTMNFDVIKGKPVRI 84
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 103/187 (55%), Gaps = 13/187 (6%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERQA 376
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 16/181 (8%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK---AGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
A L+VG+L DV AML+EK AG + V + T RS G+ +V +AE+
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFS 275
A++ + I G+ + + + +R P + + G I++ NL +DN L FS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWS-------QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 276 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 335
G +++ +VV D E G S+G+GFV ++ AI ++G L+ R + V + R+
Sbjct: 121 AFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Query: 336 R 336
R
Sbjct: 179 R 179
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 311
P +YVG+L +V A L + FS G +++ RV D T RS G+ +V DA
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA---DA 65
Query: 312 IAALDGQNLD---GRAIRV 327
ALD N D G+ +R+
Sbjct: 66 ERALDTMNFDVIKGKPVRI 84
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 103/188 (54%), Gaps = 13/188 (6%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG----------FRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE +YV NL +D+ RL
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSSF 339
++ R ++
Sbjct: 370 RKEERQAY 377
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 16/181 (8%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK---AGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
A L+VG+L DV AML+EK AG + + + T S + +V ++AE
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFS 275
A++ + I G+ + + + +R P + + G I+V NL ++N L S
Sbjct: 68 ALDTMNFDVIKGKPVRIMWS-------QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS 120
Query: 276 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 335
G +++ VV D E G S+G+GFV + AI ++G L+GR + V + R+
Sbjct: 121 AFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKE 178
Query: 336 R 336
R
Sbjct: 179 R 179
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 311
P +YVG+L +V A L + FS G +++ R+ D T S + +V DA
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQ---HTKDA 65
Query: 312 IAALDGQNLD---GRAIRV 327
ALD N D G+ +R+
Sbjct: 66 EHALDTMNFDVIKGKPVRI 84
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313
+R +VG L W ++ LEQ FS+ G + +++++ DRETGRSRGFGFVT E + DAI
Sbjct: 6 YRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIE 65
Query: 314 ALDGQNLDGRAIRVNVAE 331
++GQ LDGR I VN A+
Sbjct: 66 GMNGQELDGRNITVNEAQ 83
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
+ FVG L + + E L F + G + +++I +RET RSRGFGFVT + A+E
Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66
Query: 221 FHRYDIDGRLLTVNKA 236
+ ++DGR +TVN+A
Sbjct: 67 MNGQELDGRNITVNEA 82
>sp|O74400|YOCE_SCHPO Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC4F6.14 PE=1 SV=1
Length = 674
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 10/181 (5%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
++ LFV NL + + L F G ++ A V+ N ET +RG+GFVT S +E+A++A
Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAA 63
Query: 219 EMFHRYDIDGRLLTVNKAAPRGT------QPERAPRVFEPGF--RIYVGNLPWEVDNAR- 269
+ + GR+L ++ A PR Q + + R+ + NLPW + +
Sbjct: 64 KELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQH 123
Query: 270 LEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329
LE FS+ GKV ++ + GR GF FV M +A+ +L+G +DGR I V+
Sbjct: 124 LEPHFSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDW 182
Query: 330 A 330
A
Sbjct: 183 A 183
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 256 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315
++V NL ++ L FS+ G + +A VV + ETG +RG+GFVT S + A L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 316 DGQNLDGRAIRVNVAEDRQR 335
+ L GR +R++ A R+R
Sbjct: 67 KNKKLHGRILRLDFATPRKR 86
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 21/160 (13%)
Query: 79 DWADQEEDKDNTTITLEQEQEENGE-----------EEPNWENQGADETEGN-----LSD 122
DWA ++ + TT+ +EEN E E+ + +++ +E +G+ L+
Sbjct: 181 DWAVSKDAFEATTLKDASSEEENKEFVSDEGHSIVTEDASADSESEEEVDGHSEGKELAG 240
Query: 123 WGEPEGE--DTVVEAGERQEESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVDSEKLAMLF 180
E EG D V ++G+ S + + E E ED +FV NL ++ ++L F
Sbjct: 241 ESEEEGSNVDDVEDSGD--SSSDKNSINHEIRDNEGLEDT-VFVRNLLFECTEQELYNHF 297
Query: 181 EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220
+ G + A+++ + TDRS G GF+ ++ + +EM
Sbjct: 298 RQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLEM 337
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 161 KLFVGNLPYDVDS-EKLAMLFEKAGTV-EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218
+L + NLP+ + + L F K G V EI I + R GF FV M + AE+A+
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIK--IPTKGGGRMCGFAFVWMKDRKAAEEAM 165
Query: 219 EMFHRYDIDGRLLTVNKAAPR 239
+ +IDGR + V+ A +
Sbjct: 166 NSLNGTEIDGRPIAVDWAVSK 186
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 4/184 (2%)
Query: 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEA 214
EP + KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 215 EKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVF 274
+ A+ + +DGR++ +A R + + P +I+VG + + + L F
Sbjct: 69 DAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 275 SEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++GK+ ++ DR +G+ RGF FVT + D I ++G V A +Q
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQ 184
Query: 335 RRSS 338
+S
Sbjct: 185 EMAS 188
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 103/187 (55%), Gaps = 13/187 (6%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221
+++ N D+D E+L LF K G +V+ + E+ +S+GFGFV+ E+A+KAV+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFE----------PGFRIYVGNLPWEVDNARLE 271
+ +++G+ + V +A + + R FE G +YV NL +D+ RL
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331
+ FS G + +A+V+ E GRS+GFGFV SS E A+ ++G+ + + + V +A+
Sbjct: 312 KEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 332 DRQRRSS 338
++ R +
Sbjct: 370 RKEERQA 376
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 16/181 (8%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK---AGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 216
A L+VG+L D AML+EK AG + V + T RS G+ +V +AE+
Sbjct: 11 ASLYVGDLHPDATE---AMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 217 AVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFS 275
A++ + I G+ + + + +R P + + G I++ NL +DN L FS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWS-------QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 276 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 335
G +++ +VV D E G S+G+GFV ++ AI ++G L+ R + V + R+
Sbjct: 121 AFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Query: 336 R 336
R
Sbjct: 179 R 179
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 311
P +YVG+L + A L + FS G +++ RV D T RS G+ +V DA
Sbjct: 9 PMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA---DA 65
Query: 312 IAALDGQNLD---GRAIRV 327
ALD N D G+ +R+
Sbjct: 66 ERALDTMNFDVIKGKPVRI 84
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 4/184 (2%)
Query: 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEA 214
EP + KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 215 EKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVF 274
+ A+ + +DGR++ +A R + + P +I+VG + + + L F
Sbjct: 69 DAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 275 SEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++GK+ ++ DR +G+ RGF FVT + D I ++G V A +Q
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQ 184
Query: 335 RRSS 338
+S
Sbjct: 185 EMAS 188
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 4/184 (2%)
Query: 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEA 214
EP + KLF+G L ++ E L FE+ GT+ V+ + T RSRGFGFVT +TVEE
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 215 EKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVF 274
+ A+ + +DGR++ +A R + + P +I+VG + + + L F
Sbjct: 69 DAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 275 SEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334
++GK+ ++ DR +G+ RGF FVT + D I ++G V A +Q
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-DKIVIQKYHTVNGHNCEVRKALSKQ 184
Query: 335 RRSS 338
+S
Sbjct: 185 EMAS 188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,814,474
Number of Sequences: 539616
Number of extensions: 5914896
Number of successful extensions: 33746
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 703
Number of HSP's that attempted gapping in prelim test: 23182
Number of HSP's gapped (non-prelim): 6317
length of query: 339
length of database: 191,569,459
effective HSP length: 118
effective length of query: 221
effective length of database: 127,894,771
effective search space: 28264744391
effective search space used: 28264744391
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)