Query 019542
Match_columns 339
No_of_seqs 343 out of 2389
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 02:35:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.2E-33 2.6E-38 263.5 22.8 174 155-336 103-278 (346)
2 TIGR01645 half-pint poly-U bin 100.0 1E-32 2.2E-37 270.1 21.9 179 157-335 105-286 (612)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.6E-31 9.9E-36 249.5 23.8 177 159-335 89-351 (352)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.7E-31 1.9E-35 247.6 22.2 168 159-334 3-172 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 5.6E-30 1.2E-34 250.2 22.7 176 157-333 87-266 (457)
6 KOG0148 Apoptosis-promoting RN 100.0 9.1E-30 2E-34 219.1 17.1 170 159-334 62-239 (321)
7 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-28 3.3E-33 245.9 20.7 167 161-334 2-168 (562)
8 KOG0117 Heterogeneous nuclear 100.0 2.7E-28 5.9E-33 222.9 18.8 175 154-336 78-334 (506)
9 TIGR01628 PABP-1234 polyadenyl 100.0 1.4E-27 3.1E-32 238.9 20.7 176 157-334 176-365 (562)
10 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.6E-27 7.9E-32 233.4 22.2 170 157-333 173-375 (509)
11 KOG0127 Nucleolar protein fibr 100.0 1.4E-27 3.1E-32 222.7 17.3 176 160-336 6-199 (678)
12 KOG0131 Splicing factor 3b, su 100.0 6.7E-28 1.4E-32 196.5 12.9 171 158-335 8-179 (203)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.2E-26 2.6E-31 229.8 24.7 175 158-332 294-501 (509)
14 TIGR01648 hnRNP-R-Q heterogene 100.0 5.7E-27 1.2E-31 229.5 21.9 171 156-335 55-309 (578)
15 KOG0127 Nucleolar protein fibr 100.0 5.5E-27 1.2E-31 218.8 19.0 175 159-334 117-379 (678)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.5E-26 5.5E-31 225.1 22.1 166 158-333 1-174 (481)
17 KOG0144 RNA-binding protein CU 99.9 3.1E-27 6.8E-32 215.0 14.3 171 157-335 32-208 (510)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 9.2E-26 2E-30 221.2 21.8 170 157-333 273-480 (481)
19 KOG0145 RNA-binding protein EL 99.9 1.6E-26 3.5E-31 198.0 13.5 168 160-335 42-211 (360)
20 TIGR01622 SF-CC1 splicing fact 99.9 6.4E-25 1.4E-29 214.6 21.6 173 158-334 185-449 (457)
21 KOG0145 RNA-binding protein EL 99.9 1.4E-24 3E-29 186.2 16.1 179 156-334 124-359 (360)
22 KOG0109 RNA-binding protein LA 99.9 2E-24 4.3E-29 187.9 11.0 151 160-336 3-153 (346)
23 KOG0110 RNA-binding protein (R 99.9 1.7E-23 3.7E-28 201.3 15.6 172 162-333 518-693 (725)
24 KOG0124 Polypyrimidine tract-b 99.9 2.8E-24 6E-29 192.0 9.4 175 159-333 113-290 (544)
25 KOG0123 Polyadenylate-binding 99.9 1.5E-22 3.3E-27 189.9 17.3 154 160-335 2-155 (369)
26 KOG4205 RNA-binding protein mu 99.9 1.3E-22 2.7E-27 184.4 12.1 174 158-335 5-178 (311)
27 KOG0148 Apoptosis-promoting RN 99.9 3.8E-22 8.2E-27 172.2 11.7 139 158-334 5-143 (321)
28 KOG0146 RNA-binding protein ET 99.9 1.7E-21 3.6E-26 167.8 12.5 181 158-339 18-371 (371)
29 KOG0147 Transcriptional coacti 99.9 2.8E-22 6.1E-27 188.3 6.6 178 157-335 177-360 (549)
30 TIGR01645 half-pint poly-U bin 99.8 3.5E-19 7.5E-24 175.2 23.2 81 158-238 203-283 (612)
31 KOG0123 Polyadenylate-binding 99.8 4.4E-20 9.5E-25 173.4 14.9 167 162-332 79-245 (369)
32 KOG0144 RNA-binding protein CU 99.8 7E-20 1.5E-24 167.3 13.5 180 156-336 121-507 (510)
33 PLN03134 glycine-rich RNA-bind 99.8 2.9E-18 6.3E-23 140.9 13.2 85 251-335 32-116 (144)
34 KOG0105 Alternative splicing f 99.8 2.4E-17 5.2E-22 135.1 16.3 162 158-329 5-186 (241)
35 KOG4211 Splicing factor hnRNP- 99.8 1.2E-17 2.7E-22 155.3 16.4 170 156-331 7-180 (510)
36 KOG4206 Spliceosomal protein s 99.7 6.5E-17 1.4E-21 137.4 16.7 166 158-331 8-220 (221)
37 KOG1548 Transcription elongati 99.7 1.1E-16 2.4E-21 142.9 18.8 175 156-335 131-354 (382)
38 KOG0147 Transcriptional coacti 99.7 3E-17 6.6E-22 154.6 12.3 252 30-331 194-526 (549)
39 KOG4212 RNA-binding protein hn 99.7 2.4E-16 5.2E-21 144.4 16.2 171 158-330 43-291 (608)
40 PLN03134 glycine-rich RNA-bind 99.7 1.1E-16 2.3E-21 131.6 11.6 84 158-241 33-116 (144)
41 KOG0110 RNA-binding protein (R 99.7 3.8E-16 8.3E-21 151.0 14.4 169 157-331 383-596 (725)
42 KOG0122 Translation initiation 99.7 3.1E-16 6.8E-21 134.0 11.0 83 252-334 188-270 (270)
43 PF00076 RRM_1: RNA recognitio 99.7 8.5E-16 1.8E-20 110.1 10.0 70 256-326 1-70 (70)
44 COG0724 RNA-binding proteins ( 99.6 1.9E-15 4.1E-20 136.3 13.7 160 159-318 115-290 (306)
45 KOG1457 RNA binding protein (c 99.6 4.3E-15 9.4E-20 125.4 14.1 159 158-320 33-273 (284)
46 KOG0106 Alternative splicing f 99.6 5.3E-16 1.1E-20 133.1 7.5 155 160-330 2-168 (216)
47 TIGR01659 sex-lethal sex-letha 99.6 2.1E-15 4.6E-20 141.0 11.7 84 250-333 104-187 (346)
48 KOG0113 U1 small nuclear ribon 99.6 1.6E-15 3.5E-20 133.1 8.0 83 157-239 99-181 (335)
49 PF00076 RRM_1: RNA recognitio 99.6 4.2E-15 9.2E-20 106.5 8.9 70 162-232 1-70 (70)
50 PF14259 RRM_6: RNA recognitio 99.6 8.3E-15 1.8E-19 105.4 9.6 70 256-326 1-70 (70)
51 KOG0149 Predicted RNA-binding 99.6 2.7E-15 5.9E-20 127.9 7.9 77 254-331 13-89 (247)
52 KOG0149 Predicted RNA-binding 99.6 5.1E-15 1.1E-19 126.2 8.5 80 159-239 12-91 (247)
53 TIGR01648 hnRNP-R-Q heterogene 99.6 1.5E-14 3.3E-19 142.3 12.8 118 211-332 19-137 (578)
54 KOG1190 Polypyrimidine tract-b 99.6 7.5E-14 1.6E-18 127.3 16.0 165 159-332 297-490 (492)
55 KOG0121 Nuclear cap-binding pr 99.6 6.5E-15 1.4E-19 113.9 7.4 83 157-239 34-116 (153)
56 KOG0121 Nuclear cap-binding pr 99.6 8.5E-15 1.8E-19 113.3 7.3 79 252-330 35-113 (153)
57 KOG0125 Ataxin 2-binding prote 99.6 1.4E-14 3.1E-19 128.7 9.5 79 254-334 97-175 (376)
58 KOG0126 Predicted RNA-binding 99.6 5.7E-16 1.2E-20 126.8 0.3 84 253-336 35-118 (219)
59 PF14259 RRM_6: RNA recognitio 99.6 2.3E-14 5E-19 103.0 8.7 70 162-232 1-70 (70)
60 PLN03120 nucleic acid binding 99.6 2.7E-14 5.9E-19 125.7 10.8 77 253-333 4-80 (260)
61 KOG4207 Predicted splicing fac 99.5 7.3E-15 1.6E-19 122.7 6.0 80 252-331 12-91 (256)
62 KOG0122 Translation initiation 99.5 2.8E-14 6.1E-19 122.2 9.3 84 156-239 186-269 (270)
63 KOG4212 RNA-binding protein hn 99.5 3.6E-13 7.8E-18 123.8 16.3 71 255-330 538-608 (608)
64 KOG0120 Splicing factor U2AF, 99.5 8.2E-14 1.8E-18 133.1 12.7 176 157-332 287-491 (500)
65 PLN03213 repressor of silencin 99.5 5.6E-14 1.2E-18 130.8 9.2 78 252-333 9-88 (759)
66 KOG0113 U1 small nuclear ribon 99.5 8.3E-14 1.8E-18 122.4 9.7 84 251-334 99-182 (335)
67 PLN03120 nucleic acid binding 99.5 1.3E-13 2.9E-18 121.4 10.9 79 159-241 4-82 (260)
68 KOG0117 Heterogeneous nuclear 99.5 3.1E-13 6.8E-18 124.6 12.6 121 210-335 43-166 (506)
69 KOG0126 Predicted RNA-binding 99.5 4.7E-15 1E-19 121.4 0.4 86 157-242 33-118 (219)
70 KOG0129 Predicted RNA-binding 99.5 8.1E-13 1.7E-17 124.3 15.1 157 155-314 255-432 (520)
71 KOG0107 Alternative splicing f 99.5 1.3E-13 2.7E-18 112.6 8.3 79 253-336 10-88 (195)
72 smart00362 RRM_2 RNA recogniti 99.5 3.1E-13 6.8E-18 96.3 9.4 72 255-328 1-72 (72)
73 KOG1365 RNA-binding protein Fu 99.5 1.4E-13 3.1E-18 124.5 8.9 170 159-331 161-360 (508)
74 KOG0124 Polypyrimidine tract-b 99.5 2.3E-12 5.1E-17 116.0 16.3 172 158-329 209-531 (544)
75 PLN03121 nucleic acid binding 99.5 4.5E-13 9.7E-18 116.3 10.8 77 252-332 4-80 (243)
76 smart00360 RRM RNA recognition 99.5 4.2E-13 9E-18 95.3 8.8 71 258-328 1-71 (71)
77 KOG1190 Polypyrimidine tract-b 99.4 2.8E-12 6.1E-17 117.1 15.7 166 158-333 149-373 (492)
78 KOG0108 mRNA cleavage and poly 99.4 2.3E-13 5.1E-18 129.2 8.1 82 254-335 19-100 (435)
79 KOG0114 Predicted RNA-binding 99.4 8.6E-13 1.9E-17 98.5 9.2 84 154-240 13-96 (124)
80 KOG0114 Predicted RNA-binding 99.4 6.7E-13 1.5E-17 99.1 8.4 78 253-333 18-95 (124)
81 KOG0131 Splicing factor 3b, su 99.4 2.9E-13 6.3E-18 111.1 6.8 83 253-335 9-91 (203)
82 PLN03213 repressor of silencin 99.4 6.3E-13 1.4E-17 123.9 9.6 77 159-239 10-88 (759)
83 cd00590 RRM RRM (RNA recogniti 99.4 2.2E-12 4.9E-17 92.3 10.1 74 255-329 1-74 (74)
84 PLN03121 nucleic acid binding 99.4 1.6E-12 3.4E-17 112.9 10.4 79 158-240 4-82 (243)
85 KOG0125 Ataxin 2-binding prote 99.4 1.1E-12 2.5E-17 116.7 9.7 83 158-242 95-177 (376)
86 smart00362 RRM_2 RNA recogniti 99.4 2.1E-12 4.6E-17 91.9 9.2 72 161-234 1-72 (72)
87 KOG0111 Cyclophilin-type pepti 99.4 2.1E-13 4.6E-18 114.9 4.1 81 254-334 11-91 (298)
88 KOG0130 RNA-binding protein RB 99.4 1.1E-12 2.3E-17 102.6 7.6 88 247-334 66-153 (170)
89 COG0724 RNA-binding proteins ( 99.4 1.9E-12 4.1E-17 116.7 10.4 79 253-331 115-193 (306)
90 KOG0107 Alternative splicing f 99.4 1.4E-12 3E-17 106.6 8.0 80 157-241 8-87 (195)
91 smart00360 RRM RNA recognition 99.4 3.6E-12 7.8E-17 90.3 8.8 71 164-234 1-71 (71)
92 KOG4210 Nuclear localization s 99.4 1.4E-12 3.1E-17 118.5 7.9 178 158-336 87-267 (285)
93 smart00361 RRM_1 RNA recogniti 99.4 3.9E-12 8.5E-17 91.5 8.3 62 267-328 2-70 (70)
94 KOG0108 mRNA cleavage and poly 99.3 2.5E-12 5.3E-17 122.3 8.6 81 160-240 19-99 (435)
95 KOG4207 Predicted splicing fac 99.3 2E-12 4.4E-17 108.2 6.3 81 159-239 13-93 (256)
96 PF13893 RRM_5: RNA recognitio 99.3 7.9E-12 1.7E-16 85.7 8.3 56 270-330 1-56 (56)
97 KOG0130 RNA-binding protein RB 99.3 4.2E-12 9.2E-17 99.3 7.6 86 157-242 70-155 (170)
98 cd00590 RRM RRM (RNA recogniti 99.3 1.9E-11 4.1E-16 87.4 9.8 74 161-235 1-74 (74)
99 KOG1456 Heterogeneous nuclear 99.3 6.1E-11 1.3E-15 107.3 14.5 171 152-334 24-200 (494)
100 KOG0120 Splicing factor U2AF, 99.3 5.8E-12 1.3E-16 120.5 8.1 170 158-334 174-370 (500)
101 KOG4454 RNA binding protein (R 99.3 8.1E-13 1.8E-17 111.5 1.2 142 155-320 5-150 (267)
102 KOG0111 Cyclophilin-type pepti 99.2 5.5E-12 1.2E-16 106.5 3.8 83 158-240 9-91 (298)
103 KOG4211 Splicing factor hnRNP- 99.2 9.1E-11 2E-15 109.9 12.2 168 158-329 102-354 (510)
104 KOG0415 Predicted peptidyl pro 99.2 2E-11 4.3E-16 109.8 6.7 84 250-333 236-319 (479)
105 KOG0128 RNA-binding protein SA 99.2 2.2E-12 4.8E-17 127.4 -2.5 148 159-332 667-814 (881)
106 smart00361 RRM_1 RNA recogniti 99.2 1.7E-10 3.6E-15 82.9 7.8 61 173-233 2-69 (70)
107 KOG0105 Alternative splicing f 99.1 9.2E-11 2E-15 96.7 6.7 78 253-333 6-83 (241)
108 KOG4208 Nucleolar RNA-binding 99.1 2E-10 4.3E-15 96.5 8.5 85 155-239 45-130 (214)
109 PF13893 RRM_5: RNA recognitio 99.1 3.1E-10 6.7E-15 77.7 7.3 56 176-236 1-56 (56)
110 KOG0109 RNA-binding protein LA 99.1 1.3E-10 2.8E-15 102.1 6.4 74 255-336 4-77 (346)
111 KOG0226 RNA-binding proteins [ 99.1 6.9E-11 1.5E-15 102.1 4.5 172 157-331 94-268 (290)
112 KOG0415 Predicted peptidyl pro 99.1 5E-11 1.1E-15 107.2 3.6 87 152-238 232-318 (479)
113 KOG1365 RNA-binding protein Fu 99.1 5.5E-10 1.2E-14 101.5 9.5 167 158-327 59-237 (508)
114 KOG1456 Heterogeneous nuclear 99.0 1.9E-08 4.2E-13 91.4 17.4 162 162-333 125-363 (494)
115 KOG0112 Large RNA-binding prot 99.0 1.9E-10 4.1E-15 114.5 4.8 160 157-333 370-531 (975)
116 KOG4206 Spliceosomal protein s 99.0 1E-09 2.3E-14 93.7 8.3 77 255-334 11-91 (221)
117 KOG4205 RNA-binding protein mu 99.0 8.3E-10 1.8E-14 100.9 7.6 205 61-317 46-256 (311)
118 KOG0132 RNA polymerase II C-te 99.0 1.1E-09 2.4E-14 107.5 7.9 79 253-337 421-499 (894)
119 KOG4208 Nucleolar RNA-binding 98.9 3.2E-09 7E-14 89.3 7.9 81 253-333 49-130 (214)
120 KOG0146 RNA-binding protein ET 98.9 2.1E-09 4.6E-14 93.5 6.5 88 154-241 280-367 (371)
121 KOG0153 Predicted RNA-binding 98.9 4.2E-09 9.2E-14 94.9 8.2 73 254-332 229-302 (377)
122 KOG0132 RNA polymerase II C-te 98.9 5.9E-09 1.3E-13 102.5 8.0 110 158-276 420-529 (894)
123 KOG4661 Hsp27-ERE-TATA-binding 98.7 3.5E-08 7.6E-13 94.0 9.0 85 156-240 402-486 (940)
124 KOG0533 RRM motif-containing p 98.7 5.5E-08 1.2E-12 85.7 8.4 79 254-333 84-162 (243)
125 KOG4661 Hsp27-ERE-TATA-binding 98.7 4.1E-08 9E-13 93.5 7.9 82 253-334 405-486 (940)
126 KOG1457 RNA binding protein (c 98.7 9.1E-08 2E-12 81.5 8.8 84 253-336 34-121 (284)
127 PF04059 RRM_2: RNA recognitio 98.7 1.9E-07 4.1E-12 70.8 9.4 81 254-334 2-88 (97)
128 KOG4307 RNA binding protein RB 98.6 8.8E-08 1.9E-12 93.3 7.8 170 158-330 310-511 (944)
129 KOG0153 Predicted RNA-binding 98.6 9.9E-08 2.1E-12 86.2 7.4 75 158-238 227-302 (377)
130 KOG4676 Splicing factor, argin 98.6 1.3E-08 2.8E-13 93.0 1.6 170 160-335 8-228 (479)
131 KOG4209 Splicing factor RNPS1, 98.6 5.5E-08 1.2E-12 85.8 5.6 85 154-239 96-180 (231)
132 KOG4209 Splicing factor RNPS1, 98.6 9E-08 1.9E-12 84.5 6.3 79 254-333 102-180 (231)
133 KOG0533 RRM motif-containing p 98.6 2.3E-07 4.9E-12 81.8 8.7 82 158-240 82-163 (243)
134 KOG0116 RasGAP SH3 binding pro 98.6 1.9E-07 4.2E-12 88.7 8.7 81 158-239 287-367 (419)
135 KOG1548 Transcription elongati 98.6 2.4E-07 5.1E-12 83.7 8.1 79 253-332 134-220 (382)
136 KOG4307 RNA binding protein RB 98.6 3.3E-07 7.2E-12 89.4 9.6 75 255-329 869-943 (944)
137 KOG0116 RasGAP SH3 binding pro 98.5 2E-07 4.3E-12 88.6 7.7 81 253-334 288-368 (419)
138 KOG0226 RNA-binding proteins [ 98.5 1.3E-07 2.9E-12 82.0 5.5 84 156-239 187-270 (290)
139 KOG3152 TBP-binding protein, a 98.5 1.7E-07 3.8E-12 81.4 4.5 73 158-230 73-157 (278)
140 KOG2193 IGF-II mRNA-binding pr 98.4 2.1E-08 4.5E-13 92.5 -1.7 151 161-330 3-154 (584)
141 KOG0151 Predicted splicing reg 98.4 4.9E-07 1.1E-11 88.4 6.3 81 252-332 173-256 (877)
142 KOG0106 Alternative splicing f 98.4 3E-07 6.6E-12 79.4 4.3 71 255-333 3-73 (216)
143 PF04059 RRM_2: RNA recognitio 98.4 3.3E-06 7.2E-11 64.0 9.4 80 160-239 2-87 (97)
144 KOG4660 Protein Mei2, essentia 98.3 5.1E-07 1.1E-11 86.4 5.1 71 251-326 73-143 (549)
145 KOG4660 Protein Mei2, essentia 98.3 1.1E-06 2.4E-11 84.1 6.7 163 156-331 72-248 (549)
146 PF11608 Limkain-b1: Limkain b 98.3 3.1E-06 6.6E-11 61.4 6.9 68 254-331 3-75 (90)
147 KOG0128 RNA-binding protein SA 98.3 4.7E-08 1E-12 97.4 -4.0 163 158-321 570-735 (881)
148 KOG4454 RNA binding protein (R 98.2 4.9E-07 1.1E-11 76.9 2.1 76 253-330 9-84 (267)
149 KOG4210 Nuclear localization s 98.1 1.7E-06 3.6E-11 79.0 3.4 83 159-242 184-267 (285)
150 PF08777 RRM_3: RNA binding mo 98.1 7.4E-06 1.6E-10 63.4 5.2 71 253-329 1-76 (105)
151 KOG1995 Conserved Zn-finger pr 98.0 1E-05 2.2E-10 73.8 5.6 85 156-240 63-155 (351)
152 KOG0151 Predicted splicing reg 98.0 1.6E-05 3.4E-10 78.2 6.5 81 156-236 171-254 (877)
153 KOG1995 Conserved Zn-finger pr 97.8 1.7E-05 3.7E-10 72.5 3.9 82 254-335 67-156 (351)
154 PF11608 Limkain-b1: Limkain b 97.7 0.00021 4.6E-09 52.0 7.8 70 160-239 3-77 (90)
155 KOG0115 RNA-binding protein p5 97.7 9.1E-05 2E-09 64.8 6.8 89 213-317 6-94 (275)
156 COG5175 MOT2 Transcriptional r 97.7 9.3E-05 2E-09 66.9 6.4 79 254-332 115-202 (480)
157 KOG2314 Translation initiation 97.6 0.00024 5.2E-09 68.4 8.0 76 255-331 60-142 (698)
158 PF08777 RRM_3: RNA binding mo 97.5 0.00021 4.6E-09 55.3 6.0 58 160-223 2-59 (105)
159 COG5175 MOT2 Transcriptional r 97.5 0.0003 6.6E-09 63.7 7.0 115 160-274 115-241 (480)
160 KOG4849 mRNA cleavage factor I 97.5 0.00016 3.4E-09 65.8 5.0 74 254-327 81-156 (498)
161 KOG3152 TBP-binding protein, a 97.5 0.0001 2.3E-09 64.4 3.6 70 255-324 76-157 (278)
162 KOG4849 mRNA cleavage factor I 97.3 0.00035 7.6E-09 63.6 5.5 76 160-235 81-158 (498)
163 KOG2314 Translation initiation 97.3 0.00047 1E-08 66.5 6.0 79 158-237 57-142 (698)
164 PF08952 DUF1866: Domain of un 97.3 0.0018 4E-08 52.5 8.3 56 268-332 51-106 (146)
165 KOG1855 Predicted RNA-binding 97.2 0.0007 1.5E-08 63.3 6.3 66 252-317 230-308 (484)
166 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.0013 2.7E-08 44.2 5.5 52 254-312 2-53 (53)
167 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.003 6.6E-08 48.2 7.6 77 254-332 7-91 (100)
168 KOG0129 Predicted RNA-binding 97.1 0.0023 5.1E-08 61.3 8.5 66 155-220 366-432 (520)
169 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.002 4.4E-08 43.2 5.2 52 160-218 2-53 (53)
170 KOG2416 Acinus (induces apopto 97.0 0.00098 2.1E-08 64.7 5.0 78 249-332 440-521 (718)
171 KOG1855 Predicted RNA-binding 96.9 0.0011 2.3E-08 62.1 4.6 77 157-233 229-318 (484)
172 KOG1996 mRNA splicing factor [ 96.8 0.0035 7.6E-08 56.0 6.9 65 267-331 300-365 (378)
173 PF08952 DUF1866: Domain of un 96.7 0.0059 1.3E-07 49.6 6.7 75 156-239 24-107 (146)
174 KOG2416 Acinus (induces apopto 96.6 0.007 1.5E-07 59.0 7.4 75 157-237 442-520 (718)
175 KOG2202 U2 snRNP splicing fact 96.3 0.002 4.2E-08 56.7 1.8 63 268-331 83-146 (260)
176 KOG2193 IGF-II mRNA-binding pr 96.3 0.0032 6.9E-08 58.9 3.2 77 255-337 3-80 (584)
177 PF05172 Nup35_RRM: Nup53/35/4 96.1 0.023 5.1E-07 43.4 6.4 76 159-236 6-89 (100)
178 KOG4676 Splicing factor, argin 96.0 0.01 2.2E-07 55.1 4.8 76 255-331 9-87 (479)
179 PF03467 Smg4_UPF3: Smg-4/UPF3 96.0 0.012 2.5E-07 50.0 4.9 78 253-330 7-95 (176)
180 KOG2202 U2 snRNP splicing fact 95.9 0.0044 9.6E-08 54.5 2.0 64 174-238 83-147 (260)
181 PF07576 BRAP2: BRCA1-associat 95.5 0.19 4E-06 39.2 9.6 65 255-321 15-80 (110)
182 KOG0112 Large RNA-binding prot 95.5 0.029 6.3E-07 57.4 6.1 83 155-243 451-535 (975)
183 PF10309 DUF2414: Protein of u 95.4 0.072 1.6E-06 36.8 6.2 53 255-315 7-62 (62)
184 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.019 4.2E-07 48.7 4.0 81 158-238 6-97 (176)
185 KOG1996 mRNA splicing factor [ 95.3 0.056 1.2E-06 48.5 6.7 64 173-236 300-364 (378)
186 KOG2135 Proteins containing th 95.3 0.011 2.3E-07 56.3 2.3 61 266-333 386-446 (526)
187 PF15023 DUF4523: Protein of u 94.9 0.17 3.6E-06 40.9 7.6 71 253-331 86-160 (166)
188 KOG2068 MOT2 transcription fac 94.6 0.019 4.1E-07 52.6 1.9 81 159-240 77-164 (327)
189 KOG2068 MOT2 transcription fac 94.3 0.016 3.5E-07 53.0 0.9 78 255-333 79-163 (327)
190 PF04847 Calcipressin: Calcipr 94.0 0.11 2.4E-06 44.4 5.3 62 266-333 8-71 (184)
191 KOG2253 U1 snRNP complex, subu 94.0 0.0051 1.1E-07 60.7 -3.2 151 153-313 34-194 (668)
192 KOG0115 RNA-binding protein p5 94.0 0.078 1.7E-06 46.8 4.3 76 160-236 32-111 (275)
193 PF08675 RNA_bind: RNA binding 93.9 0.24 5.3E-06 36.2 6.0 55 255-317 10-64 (87)
194 PF07576 BRAP2: BRCA1-associat 93.6 0.9 1.9E-05 35.4 9.3 68 159-228 13-81 (110)
195 PF15023 DUF4523: Protein of u 93.3 0.54 1.2E-05 38.0 7.7 75 155-237 82-160 (166)
196 PF08675 RNA_bind: RNA binding 93.2 0.65 1.4E-05 34.0 7.2 56 159-223 9-64 (87)
197 KOG0804 Cytoplasmic Zn-finger 93.0 0.38 8.3E-06 45.8 7.4 67 253-321 74-141 (493)
198 KOG2591 c-Mpl binding protein, 92.8 0.29 6.3E-06 47.8 6.5 80 149-235 165-248 (684)
199 KOG2253 U1 snRNP complex, subu 92.3 0.16 3.5E-06 50.5 4.1 72 249-329 36-107 (668)
200 PF03880 DbpA: DbpA RNA bindin 92.1 0.68 1.5E-05 33.2 6.3 58 264-330 12-74 (74)
201 PF11767 SET_assoc: Histone ly 91.9 0.77 1.7E-05 32.2 6.1 54 265-327 12-65 (66)
202 KOG4574 RNA-binding protein (c 91.7 0.11 2.4E-06 52.9 2.4 74 255-334 300-375 (1007)
203 KOG2135 Proteins containing th 91.5 0.098 2.1E-06 50.0 1.7 76 158-240 371-447 (526)
204 PF10309 DUF2414: Protein of u 91.4 1.3 2.7E-05 30.6 6.7 53 160-221 6-62 (62)
205 KOG2318 Uncharacterized conser 91.2 3.7 8E-05 40.6 11.9 127 157-330 172-305 (650)
206 KOG0804 Cytoplasmic Zn-finger 90.9 1.6 3.4E-05 41.8 8.9 70 157-228 72-142 (493)
207 KOG2591 c-Mpl binding protein, 90.4 0.75 1.6E-05 45.1 6.4 69 253-328 175-247 (684)
208 KOG4285 Mitotic phosphoprotein 90.2 1.4 3E-05 40.0 7.5 71 255-333 199-270 (350)
209 PF14111 DUF4283: Domain of un 89.0 0.52 1.1E-05 38.6 3.8 108 170-285 28-137 (153)
210 KOG4285 Mitotic phosphoprotein 88.6 0.77 1.7E-05 41.6 4.7 74 159-240 197-271 (350)
211 PF04847 Calcipressin: Calcipr 88.5 1.2 2.5E-05 38.2 5.7 62 172-239 8-71 (184)
212 KOG2891 Surface glycoprotein [ 88.3 0.53 1.2E-05 42.1 3.6 67 254-320 150-247 (445)
213 PF07292 NID: Nmi/IFP 35 domai 87.8 0.29 6.2E-06 36.4 1.3 72 204-275 1-74 (88)
214 PF11767 SET_assoc: Histone ly 85.5 3.7 8E-05 28.8 5.8 56 169-233 10-65 (66)
215 KOG4574 RNA-binding protein (c 82.4 1.3 2.8E-05 45.6 3.4 76 159-240 298-375 (1007)
216 PF04147 Nop14: Nop14-like fam 81.4 2.8 6.2E-05 44.4 5.8 20 165-184 416-439 (840)
217 PF03880 DbpA: DbpA RNA bindin 81.2 8.1 0.00018 27.5 6.4 58 170-236 12-74 (74)
218 KOG4483 Uncharacterized conser 78.8 2.5 5.4E-05 39.9 3.8 55 159-220 391-446 (528)
219 KOG4019 Calcineurin-mediated s 78.0 2.5 5.5E-05 35.6 3.2 75 255-335 12-92 (193)
220 PF10567 Nab6_mRNP_bdg: RNA-re 71.6 82 0.0018 28.9 13.7 158 158-316 14-212 (309)
221 PF04931 DNA_pol_phi: DNA poly 71.0 3.1 6.8E-05 43.8 2.7 8 176-183 741-748 (784)
222 KOG4365 Uncharacterized conser 63.4 1.2 2.7E-05 42.4 -1.8 76 255-331 5-80 (572)
223 PF04931 DNA_pol_phi: DNA poly 63.2 6.5 0.00014 41.5 3.2 15 170-184 728-742 (784)
224 KOG2295 C2H2 Zn-finger protein 60.6 1.5 3.3E-05 43.0 -1.7 70 157-226 229-298 (648)
225 KOG2891 Surface glycoprotein [ 57.7 4.6 9.9E-05 36.3 0.8 66 159-224 149-245 (445)
226 TIGR02542 B_forsyth_147 Bacter 56.9 50 0.0011 25.8 6.2 117 164-305 8-129 (145)
227 KOG4410 5-formyltetrahydrofola 53.3 25 0.00055 31.9 4.7 50 158-212 329-378 (396)
228 PF04147 Nop14: Nop14-like fam 52.1 22 0.00047 37.9 4.8 8 173-180 463-470 (840)
229 smart00596 PRE_C2HC PRE_C2HC d 52.0 27 0.00058 24.6 3.7 61 268-331 2-63 (69)
230 PF03468 XS: XS domain; Inter 50.6 27 0.00059 27.4 4.1 56 255-313 10-75 (116)
231 PF11823 DUF3343: Protein of u 50.5 21 0.00046 25.2 3.2 29 296-324 2-30 (73)
232 KOG0943 Predicted ubiquitin-pr 50.3 21 0.00046 38.9 4.3 7 256-262 1976-1982(3015)
233 KOG4410 5-formyltetrahydrofola 48.0 38 0.00082 30.8 5.0 47 254-306 331-378 (396)
234 PF07530 PRE_C2HC: Associated 47.1 38 0.00083 23.8 4.0 61 268-331 2-63 (68)
235 KOG4019 Calcineurin-mediated s 47.1 16 0.00035 30.9 2.3 74 160-239 11-90 (193)
236 KOG1999 RNA polymerase II tran 46.8 88 0.0019 33.4 8.0 29 199-227 208-236 (1024)
237 PF03468 XS: XS domain; Inter 44.6 26 0.00056 27.5 3.1 57 161-220 10-76 (116)
238 PF15513 DUF4651: Domain of un 42.5 59 0.0013 22.4 4.1 19 174-192 9-27 (62)
239 KOG2295 C2H2 Zn-finger protein 42.4 4.7 0.0001 39.7 -1.7 71 253-323 231-301 (648)
240 COG5193 LHP1 La protein, small 38.1 14 0.0003 35.2 0.7 61 253-313 174-244 (438)
241 PF10567 Nab6_mRNP_bdg: RNA-re 37.1 81 0.0018 28.9 5.4 78 254-331 16-106 (309)
242 KOG4008 rRNA processing protei 33.5 39 0.00084 29.9 2.7 35 155-189 36-70 (261)
243 COG0445 GidA Flavin-dependent 33.4 1.8E+02 0.0039 29.4 7.5 95 201-303 236-343 (621)
244 COG5193 LHP1 La protein, small 33.2 19 0.00041 34.3 0.8 62 159-220 174-245 (438)
245 KOG4213 RNA-binding protein La 33.2 56 0.0012 27.7 3.5 58 159-220 111-169 (205)
246 KOG1295 Nonsense-mediated deca 33.1 42 0.0009 31.8 3.0 68 159-226 7-77 (376)
247 KOG2038 CAATT-binding transcri 32.7 58 0.0013 33.9 4.1 16 160-175 956-971 (988)
248 KOG1295 Nonsense-mediated deca 32.2 51 0.0011 31.2 3.4 67 254-320 8-77 (376)
249 PF02714 DUF221: Domain of unk 31.2 99 0.0021 28.5 5.3 56 204-275 1-56 (325)
250 KOG4483 Uncharacterized conser 30.4 1.2E+02 0.0025 29.1 5.4 54 254-314 392-446 (528)
251 TIGR03636 L23_arch archaeal ri 30.0 1.9E+02 0.004 20.9 5.3 54 257-313 17-72 (77)
252 PRK14548 50S ribosomal protein 29.0 2E+02 0.0044 21.1 5.5 52 260-314 27-80 (84)
253 PF11823 DUF3343: Protein of u 27.0 83 0.0018 22.1 3.1 29 202-230 2-30 (73)
254 KOG4365 Uncharacterized conser 26.9 15 0.00033 35.3 -0.9 77 161-238 5-81 (572)
255 KOG4213 RNA-binding protein La 26.9 92 0.002 26.4 3.7 57 254-314 112-169 (205)
256 COG4547 CobT Cobalamin biosynt 24.6 1E+02 0.0022 30.2 4.0 13 223-235 423-435 (620)
257 KOG0156 Cytochrome P450 CYP2 s 23.7 1.3E+02 0.0027 30.0 4.7 66 156-231 29-97 (489)
258 PF14111 DUF4283: Domain of un 22.5 41 0.00088 27.1 0.9 58 267-333 35-92 (153)
259 KOG2318 Uncharacterized conser 22.0 1.4E+02 0.003 30.1 4.4 40 249-288 170-214 (650)
260 COG5638 Uncharacterized conser 22.0 3.5E+02 0.0075 26.1 6.9 211 89-329 74-294 (622)
261 PTZ00415 transmission-blocking 22.0 71 0.0015 36.5 2.7 55 82-136 141-195 (2849)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.2e-33 Score=263.46 Aligned_cols=174 Identities=26% Similarity=0.506 Sum_probs=159.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.....++|||+|||+++++++|+++|..||.|..|+|+.+..+++++|||||+|.+.++|.+|+..|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 019542 235 KAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314 (339)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~ 314 (339)
++.+.... ...++|||+|||+.+++++|+++|++||.|..++|++++.+++++|||||+|.+.++|.+|+..
T Consensus 183 ~a~p~~~~--------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 183 YARPGGES--------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred cccccccc--------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 88654321 1235899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeeCC--eEEEEEEecccccC
Q 019542 315 LDGQNLDG--RAIRVNVAEDRQRR 336 (339)
Q Consensus 315 l~g~~l~g--r~l~V~~a~~~~~~ 336 (339)
||+..+.| +.|+|.|++.+.+.
T Consensus 255 lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 255 LNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred hCCCccCCCceeEEEEECCccccc
Confidence 99998865 79999999876543
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1e-32 Score=270.14 Aligned_cols=179 Identities=19% Similarity=0.381 Sum_probs=159.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
...++|||||||+++++++|+++|.+||.|.+|+++.++.+|+++|||||+|.+.++|.+|+..+||..+.||.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCC---CCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 019542 237 APRGTQPER---APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313 (339)
Q Consensus 237 ~~~~~~~~~---~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~ 313 (339)
......... ........++|||+|||+.+++++|+++|+.||.|.+++|.+++.+|+++|||||+|.+.++|.+|+.
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 543221111 11112344699999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeeCCeEEEEEEeccccc
Q 019542 314 ALDGQNLDGRAIRVNVAEDRQR 335 (339)
Q Consensus 314 ~l~g~~l~gr~l~V~~a~~~~~ 335 (339)
.|||..|+|+.|+|.++...+.
T Consensus 265 amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred HhCCCeeCCeEEEEEecCCCcc
Confidence 9999999999999999986553
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.98 E-value=4.6e-31 Score=249.46 Aligned_cols=177 Identities=27% Similarity=0.469 Sum_probs=154.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCC--ceeeeecc
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDG--RLLTVNKA 236 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~g--r~l~V~~a 236 (339)
..+|||+|||..+++++|+.+|++||.|..++++.+..++.++|||||+|.+.++|..|+..|||..+.| ++|.|.++
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFA 168 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 4689999999999999999999999999999999988889999999999999999999999999999877 56788776
Q ss_pred CCCCCCCC----------------C-------------------------------------------------------
Q 019542 237 APRGTQPE----------------R------------------------------------------------------- 245 (339)
Q Consensus 237 ~~~~~~~~----------------~------------------------------------------------------- 245 (339)
........ .
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
T TIGR01661 169 NNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPA 248 (352)
T ss_pred CCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCcc
Confidence 43321000 0
Q ss_pred -------------CCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHH
Q 019542 246 -------------APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312 (339)
Q Consensus 246 -------------~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al 312 (339)
.......+.+|||+|||+.+++++|+++|++||.|.+++|++|+.+|.++|||||+|.+.++|.+|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai 328 (352)
T TIGR01661 249 TDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAI 328 (352)
T ss_pred ccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHH
Confidence 0000112346999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeeCCeEEEEEEeccccc
Q 019542 313 AALDGQNLDGRAIRVNVAEDRQR 335 (339)
Q Consensus 313 ~~l~g~~l~gr~l~V~~a~~~~~ 335 (339)
..|||..|+||.|+|.|+..+..
T Consensus 329 ~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 329 LSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999988764
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=8.7e-31 Score=247.57 Aligned_cols=168 Identities=30% Similarity=0.559 Sum_probs=154.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
..+|||+|||+++++++|+++|+.||+|..|++++++.+|+++|||||+|.+.++|.+|+..+++..+.|+.|+|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred CCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 019542 239 RGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ 318 (339)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~ 318 (339)
.... ...++|||+|||..+++++|+.+|+.||.|..++++++..++.++|||||+|.+.++|..|+..|||.
T Consensus 83 ~~~~--------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~ 154 (352)
T TIGR01661 83 SSDS--------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGT 154 (352)
T ss_pred cccc--------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 4321 12458999999999999999999999999999999999888999999999999999999999999999
Q ss_pred eeCC--eEEEEEEecccc
Q 019542 319 NLDG--RAIRVNVAEDRQ 334 (339)
Q Consensus 319 ~l~g--r~l~V~~a~~~~ 334 (339)
.+.| +.|.|.|+..+.
T Consensus 155 ~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 155 TPSGCTEPITVKFANNPS 172 (352)
T ss_pred ccCCCceeEEEEECCCCC
Confidence 9877 678999886543
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=5.6e-30 Score=250.25 Aligned_cols=176 Identities=30% Similarity=0.536 Sum_probs=156.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
...++|||+|||+.+++++|+++|++||.|..|+++.+..+|+++|||||+|.+.++|.+|+. ++|..+.|+.|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 456899999999999999999999999999999999999999999999999999999999998 4999999999999876
Q ss_pred CCCCCCCCC----CCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHH
Q 019542 237 APRGTQPER----APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312 (339)
Q Consensus 237 ~~~~~~~~~----~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al 312 (339)
......... .........+|||+|||+.+++++|+++|+.||.|..|.|++++.+|+++|||||+|.+.++|.+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~ 245 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEAL 245 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 543222111 0111123579999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeeCCeEEEEEEeccc
Q 019542 313 AALDGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 313 ~~l~g~~l~gr~l~V~~a~~~ 333 (339)
..|||..|.|+.|+|.|+...
T Consensus 246 ~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 246 EVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HhcCCcEECCEEEEEEEccCC
Confidence 999999999999999998743
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=9.1e-30 Score=219.07 Aligned_cols=170 Identities=27% Similarity=0.479 Sum_probs=156.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
..-||||.|...++-++|++.|.+||+|..++++++.+|+++||||||.|-++++|+.|+..+||.=|.+|.||-.+|..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCC--------CCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHH
Q 019542 239 RGTQPERAPR--------VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 310 (339)
Q Consensus 239 ~~~~~~~~~~--------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~ 310 (339)
+.......+. .....++|||||++..++++.|++.|++||.|..|||.++ +|||||+|.+.|+|.+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAH 215 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHH
Confidence 8744332221 2345689999999999999999999999999999999988 8999999999999999
Q ss_pred HHHHhCCCeeCCeEEEEEEecccc
Q 019542 311 AIAALDGQNLDGRAIRVNVAEDRQ 334 (339)
Q Consensus 311 Al~~l~g~~l~gr~l~V~~a~~~~ 334 (339)
||-.+||..|.|+.+++.|-+...
T Consensus 216 AIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred HHHHhcCceeCceEEEEeccccCC
Confidence 999999999999999999987653
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.5e-28 Score=245.93 Aligned_cols=167 Identities=31% Similarity=0.460 Sum_probs=152.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCCC
Q 019542 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 240 (339)
Q Consensus 161 ~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~~ 240 (339)
+|||||||+++|+++|+++|++||.|..|+++++..+++++|||||+|.+.++|.+|+..+++..+.|+.|+|.++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999875432
Q ss_pred CCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 019542 241 TQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL 320 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l 320 (339)
... .....+|||+|||.++++++|+++|+.||.|..|+|.++ .+|+++|||||+|.+.++|.+|+..+||..+
T Consensus 82 ~~~------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 82 SLR------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccc------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 211 112347999999999999999999999999999999988 5788999999999999999999999999999
Q ss_pred CCeEEEEEEecccc
Q 019542 321 DGRAIRVNVAEDRQ 334 (339)
Q Consensus 321 ~gr~l~V~~a~~~~ 334 (339)
.|+.|.|.....+.
T Consensus 155 ~~~~i~v~~~~~~~ 168 (562)
T TIGR01628 155 NDKEVYVGRFIKKH 168 (562)
T ss_pred cCceEEEecccccc
Confidence 99999998765543
No 8
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.7e-28 Score=222.85 Aligned_cols=175 Identities=30% Similarity=0.523 Sum_probs=151.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCccc-CCceee
Q 019542 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI-DGRLLT 232 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l-~gr~l~ 232 (339)
..++..+.||||.||.|+.+++|.-+|.+.|+|-.+||++++.+|.+||||||.|.+++.|+.|++.||++.| .|+.|.
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 3456788999999999999999999999999999999999999999999999999999999999999999988 789999
Q ss_pred eeccCCCCCC---------------------------------C---CCC------------------------------
Q 019542 233 VNKAAPRGTQ---------------------------------P---ERA------------------------------ 246 (339)
Q Consensus 233 V~~a~~~~~~---------------------------------~---~~~------------------------------ 246 (339)
|+.+..+... + .++
T Consensus 158 vc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwg 237 (506)
T KOG0117|consen 158 VCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWG 237 (506)
T ss_pred EEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecC
Confidence 8766433200 0 000
Q ss_pred ---------------CCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHH
Q 019542 247 ---------------PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 311 (339)
Q Consensus 247 ---------------~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~A 311 (339)
......-..|||+||+..+|++.|+.+|+.||.|+.|..++| ||||.|.++++|.+|
T Consensus 238 n~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkA 309 (506)
T KOG0117|consen 238 NAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKA 309 (506)
T ss_pred CcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHH
Confidence 000111237999999999999999999999999999998866 999999999999999
Q ss_pred HHHhCCCeeCCeEEEEEEecccccC
Q 019542 312 IAALDGQNLDGRAIRVNVAEDRQRR 336 (339)
Q Consensus 312 l~~l~g~~l~gr~l~V~~a~~~~~~ 336 (339)
++.+||..|+|..|.|.+|++..++
T Consensus 310 m~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 310 MKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred HHHhcCceecCceEEEEecCChhhh
Confidence 9999999999999999999987654
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.4e-27 Score=238.90 Aligned_cols=176 Identities=36% Similarity=0.594 Sum_probs=156.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccC----Cceee
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDID----GRLLT 232 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~----gr~l~ 232 (339)
....+|||+|||+++++++|+++|..||.|..+.+..+. +|+++|||||.|.+.++|.+|+..+++..+. |+.|.
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 345689999999999999999999999999999998875 5899999999999999999999999999999 99999
Q ss_pred eeccCCCCCCCCC----------CCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEe
Q 019542 233 VNKAAPRGTQPER----------APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTM 302 (339)
Q Consensus 233 V~~a~~~~~~~~~----------~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F 302 (339)
|.++..+...... .......+++|||+||++.+++++|+++|+.||.|.+++|+++ .+|+++|||||+|
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f 333 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCF 333 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEe
Confidence 9888665433110 0011234568999999999999999999999999999999999 7899999999999
Q ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEEEecccc
Q 019542 303 SSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334 (339)
Q Consensus 303 ~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~~ 334 (339)
.+.++|.+|+..|||..++|+.|+|.||..+.
T Consensus 334 ~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 334 SNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred CCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 99999999999999999999999999998754
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=3.6e-27 Score=233.45 Aligned_cols=170 Identities=24% Similarity=0.428 Sum_probs=142.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcc------------CCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKA------------GTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRY 224 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~------------G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~ 224 (339)
...++|||||||+++++++|+++|.++ +.|..+.+ ++.+|||||+|.+.++|..||. |+|.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 356899999999999999999999975 23333333 4568999999999999999995 7999
Q ss_pred ccCCceeeeeccCCCCCCCC---------------------CCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEE
Q 019542 225 DIDGRLLTVNKAAPRGTQPE---------------------RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNA 283 (339)
Q Consensus 225 ~l~gr~l~V~~a~~~~~~~~---------------------~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v 283 (339)
.|.|+.|+|.........+. ..........+|||+|||+.+++++|+++|+.||.|..+
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~ 325 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAF 325 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE
Confidence 99999999975543321110 000112345799999999999999999999999999999
Q ss_pred EEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccc
Q 019542 284 RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 284 ~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~ 333 (339)
.|+++..+|.++|||||+|.+.++|..|+..|||..|.|+.|+|.++...
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 99999999999999999999999999999999999999999999998643
No 11
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.4e-27 Score=222.69 Aligned_cols=176 Identities=31% Similarity=0.580 Sum_probs=157.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCC
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 239 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~ 239 (339)
.||||++||++++.++|.++|+.+|+|..+.++++..++.++|||||.|+-.+++++|+...++..|.||.|+|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCCC------------------CCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEE
Q 019542 240 GTQPERAP------------------RVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVT 301 (339)
Q Consensus 240 ~~~~~~~~------------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~ 301 (339)
........ ....+.-+|.|+||||.+...+|+.+|+.||.|..|.|++.+.++.+ |||||+
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEE
Confidence 54331000 01123458999999999999999999999999999999988665554 999999
Q ss_pred eCCHHHHHHHHHHhCCCeeCCeEEEEEEecccccC
Q 019542 302 MSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336 (339)
Q Consensus 302 F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~~~~ 336 (339)
|....+|.+|+..+||..|+||.|-|.||-++...
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 99999999999999999999999999999877653
No 12
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=6.7e-28 Score=196.53 Aligned_cols=171 Identities=35% Similarity=0.559 Sum_probs=156.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
...|||||||+..++++.|.++|-++|+|..+++.++.-+...+||||++|.+.++|+-|++.||...|.||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEE-EEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 019542 238 PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVN-ARVVYDRETGRSRGFGFVTMSSETELNDAIAALD 316 (339)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~-v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~ 316 (339)
.... ....+..|||+||.+.+++..|+..|+.||.+.. -.|++++.||.++|||||-|.+.+.+.+|+..+|
T Consensus 88 ~~~~-------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n 160 (203)
T KOG0131|consen 88 AHQK-------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN 160 (203)
T ss_pred cccc-------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc
Confidence 3222 1223358999999999999999999999998766 4788999999999999999999999999999999
Q ss_pred CCeeCCeEEEEEEeccccc
Q 019542 317 GQNLDGRAIRVNVAEDRQR 335 (339)
Q Consensus 317 g~~l~gr~l~V~~a~~~~~ 335 (339)
|+.+..|.|+|.|+..+..
T Consensus 161 gq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 161 GQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred cchhcCCceEEEEEEecCC
Confidence 9999999999999975543
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.2e-26 Score=229.80 Aligned_cols=175 Identities=17% Similarity=0.275 Sum_probs=149.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..++|||+|||+.+++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCCC--------------------CCCCCCceEEecCCCccc----------cHHHHHHHHhccCceEEEEEee
Q 019542 238 PRGTQPERAP--------------------RVFEPGFRIYVGNLPWEV----------DNARLEQVFSEHGKVVNARVVY 287 (339)
Q Consensus 238 ~~~~~~~~~~--------------------~~~~~~~~l~V~nLp~~~----------tee~L~~~F~~~G~V~~v~i~~ 287 (339)
.......... ....+..+|+|.|+.... ..++|+++|.+||.|..|.|++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 4432111000 001245689999996431 2368999999999999999987
Q ss_pred eC---CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 288 DR---ETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 288 d~---~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
+. .++.++|+|||+|.+.++|.+|+..|||..|+|+.|.|.|...
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 63 3456789999999999999999999999999999999999754
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=5.7e-27 Score=229.47 Aligned_cols=171 Identities=32% Similarity=0.548 Sum_probs=142.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccC-Cceeeee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDID-GRLLTVN 234 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~-gr~l~V~ 234 (339)
+...++|||+|||+++++++|+++|.+||.|..++|+++ .+|+++|||||+|.+.++|++|+..||+..+. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 334689999999999999999999999999999999999 78999999999999999999999999998874 6666554
Q ss_pred ccCCCC--------------------------------------CCCC------------------------C-------
Q 019542 235 KAAPRG--------------------------------------TQPE------------------------R------- 245 (339)
Q Consensus 235 ~a~~~~--------------------------------------~~~~------------------------~------- 245 (339)
.+.... .... .
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 332100 0000 0
Q ss_pred ------------CCCCCCCCceEEecCCCccccHHHHHHHHhcc--CceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHH
Q 019542 246 ------------APRVFEPGFRIYVGNLPWEVDNARLEQVFSEH--GKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 311 (339)
Q Consensus 246 ------------~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~--G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~A 311 (339)
.........+|||+|||+.+++++|+++|+.| |.|+.|.++ ++||||+|.+.++|.+|
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHH
Confidence 00001123579999999999999999999999 999999875 45999999999999999
Q ss_pred HHHhCCCeeCCeEEEEEEeccccc
Q 019542 312 IAALDGQNLDGRAIRVNVAEDRQR 335 (339)
Q Consensus 312 l~~l~g~~l~gr~l~V~~a~~~~~ 335 (339)
+..|||..|.|+.|+|.|++++.+
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCc
Confidence 999999999999999999987644
No 15
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=5.5e-27 Score=218.82 Aligned_cols=175 Identities=32% Similarity=0.544 Sum_probs=153.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
...|.|+||||.+...+|+.+|+.||.|..|.|++....+.| |||||+|....+|..|+..+|+..|.||+|.|+||.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 568999999999999999999999999999999988886666 9999999999999999999999999999999999987
Q ss_pred CCCCCCCC--------------------------------------CC--------------------------------
Q 019542 239 RGTQPERA--------------------------------------PR-------------------------------- 248 (339)
Q Consensus 239 ~~~~~~~~--------------------------------------~~-------------------------------- 248 (339)
+....... ..
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 64221100 00
Q ss_pred ------------CCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHh-
Q 019542 249 ------------VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL- 315 (339)
Q Consensus 249 ------------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l- 315 (339)
...-+.+|||+|||++++++.|.+.|++||.|.++.|+.++.|+.++|.|||.|.+..+|..||.+.
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0001358999999999999999999999999999999999999999999999999999999999976
Q ss_pred ----CC-CeeCCeEEEEEEecccc
Q 019542 316 ----DG-QNLDGRAIRVNVAEDRQ 334 (339)
Q Consensus 316 ----~g-~~l~gr~l~V~~a~~~~ 334 (339)
.| ..|.||.|.|..|-.|.
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchH
Confidence 24 56899999999987654
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=2.5e-26 Score=225.14 Aligned_cols=166 Identities=20% Similarity=0.214 Sum_probs=140.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHh--CCcccCCceeeeec
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF--HRYDIDGRLLTVNK 235 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~--~~~~l~gr~l~V~~ 235 (339)
++++|||+|||+++++++|+++|++||.|.++.+++ .+|||||+|.+.++|.+|+..+ ++..+.|+.|+|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 468999999999999999999999999999999884 3689999999999999999874 67889999999999
Q ss_pred cCCCCCCCCCC----CCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHH
Q 019542 236 AAPRGTQPERA----PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 311 (339)
Q Consensus 236 a~~~~~~~~~~----~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~A 311 (339)
+..+....... ........+|||+||++.+++++|+++|++||.|..|.|.++. .+|+|||+|.+.++|.+|
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHA 150 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHH
Confidence 87543221111 1111223479999999999999999999999999999997763 247999999999999999
Q ss_pred HHHhCCCeeCC--eEEEEEEeccc
Q 019542 312 IAALDGQNLDG--RAIRVNVAEDR 333 (339)
Q Consensus 312 l~~l~g~~l~g--r~l~V~~a~~~ 333 (339)
+..|||..|.| +.|+|.|++..
T Consensus 151 ~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 151 KAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred HHHhcCCcccCCceEEEEEEecCC
Confidence 99999999954 69999999863
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3.1e-27 Score=215.02 Aligned_cols=171 Identities=28% Similarity=0.466 Sum_probs=151.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcc-cC--Cceeee
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYD-ID--GRLLTV 233 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~-l~--gr~l~V 233 (339)
...-++|||-+|..++|.+|+.+|++||.|..|.|++++.++.++|+|||.|.+.++|.+|+..||+.. |. .++|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 445689999999999999999999999999999999999999999999999999999999999998744 44 477888
Q ss_pred eccCCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 019542 234 NKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313 (339)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~ 313 (339)
.+|.....+- ....+||||-|+..+++.+|+++|++||.|++|+|+|| ..+.+||+|||+|.+++.|..|++
T Consensus 112 k~Ad~E~er~-------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aik 183 (510)
T KOG0144|consen 112 KYADGERERI-------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIK 183 (510)
T ss_pred cccchhhhcc-------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHH
Confidence 8887655432 11237999999999999999999999999999999999 579999999999999999999999
Q ss_pred HhCCCe-eCC--eEEEEEEeccccc
Q 019542 314 ALDGQN-LDG--RAIRVNVAEDRQR 335 (339)
Q Consensus 314 ~l~g~~-l~g--r~l~V~~a~~~~~ 335 (339)
.|||.. +.| ..|.|.||..++.
T Consensus 184 a~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 184 ALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred hhccceeeccCCCceEEEecccCCC
Confidence 999974 665 5999999986553
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=9.2e-26 Score=221.19 Aligned_cols=170 Identities=22% Similarity=0.356 Sum_probs=143.8
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 157 PEDAKLFVGNLPY-DVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 157 ~~~~~vfVgnLp~-~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
++..+|||+|||+ .+++++|+++|+.||.|.+|+++++ .+|||||+|.+.++|..|+..||+..|.|+.|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 6999999999999999999999875 269999999999999999999999999999999998
Q ss_pred cCCCCCCCCC------------------C-----------CCCCCCCceEEecCCCccccHHHHHHHHhccCc--eEEEE
Q 019542 236 AAPRGTQPER------------------A-----------PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGK--VVNAR 284 (339)
Q Consensus 236 a~~~~~~~~~------------------~-----------~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~--V~~v~ 284 (339)
+........+ . .....++.+|||+|||+.+++++|+++|+.||. |..++
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 7543210000 0 001235679999999999999999999999998 88888
Q ss_pred EeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE------EEEEEeccc
Q 019542 285 VVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA------IRVNVAEDR 333 (339)
Q Consensus 285 i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~------l~V~~a~~~ 333 (339)
+.... +.++|+|||+|.+.++|.+||..|||..|.|+. |+|.|++++
T Consensus 428 ~~~~~--~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 428 FFPKD--NERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EecCC--CCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 76442 335899999999999999999999999999984 999999765
No 19
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.6e-26 Score=197.96 Aligned_cols=168 Identities=30% Similarity=0.571 Sum_probs=155.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCC
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 239 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~ 239 (339)
..|.|.-||..+|.++|+.+|+..|+|++|++++++-+|++-|||||.|.++++|++|+..+||..+..+.|+|.+|.+.
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS 121 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS 121 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred CCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 019542 240 GTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 319 (339)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~ 319 (339)
...- .+..|||.+||..+|..+|.++|++||.|..-||+.|.-+|.+||.+||+|..+.+|..|++.|||+.
T Consensus 122 s~~I--------k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 122 SDSI--------KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred hhhh--------cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 5432 23379999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eCC--eEEEEEEeccccc
Q 019542 320 LDG--RAIRVNVAEDRQR 335 (339)
Q Consensus 320 l~g--r~l~V~~a~~~~~ 335 (339)
-.| ..|.|.||.....
T Consensus 194 P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPSQ 211 (360)
T ss_pred CCCCCCCeEEEecCCccc
Confidence 765 5899999976543
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=6.4e-25 Score=214.65 Aligned_cols=173 Identities=26% Similarity=0.376 Sum_probs=145.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..++|||+|||+.+++++|+++|.+||.|..|.+..+..+|+++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred CCCCCC----------------------------------C---------C-------------------CC--------
Q 019542 238 PRGTQP----------------------------------E---------R-------------------AP-------- 247 (339)
Q Consensus 238 ~~~~~~----------------------------------~---------~-------------------~~-------- 247 (339)
...... . . .+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T TIGR01622 265 DSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL 344 (457)
T ss_pred CCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccc
Confidence 211000 0 0 00
Q ss_pred ------------CCCCCCceEEecCCCcccc----------HHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCH
Q 019542 248 ------------RVFEPGFRIYVGNLPWEVD----------NARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305 (339)
Q Consensus 248 ------------~~~~~~~~l~V~nLp~~~t----------ee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~ 305 (339)
....+...|+|.|+....+ .++|++.|++||.|..|.|.. +.+.|++||+|.+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~ 420 (457)
T TIGR01622 345 AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSV 420 (457)
T ss_pred ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCH
Confidence 0112345788999854443 378999999999999998853 44689999999999
Q ss_pred HHHHHHHHHhCCCeeCCeEEEEEEecccc
Q 019542 306 TELNDAIAALDGQNLDGRAIRVNVAEDRQ 334 (339)
Q Consensus 306 e~A~~Al~~l~g~~l~gr~l~V~~a~~~~ 334 (339)
++|.+|+..|||..|+||.|.|.|.....
T Consensus 421 e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 421 DAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred HHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 99999999999999999999999986543
No 21
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.4e-24 Score=186.15 Aligned_cols=179 Identities=31% Similarity=0.474 Sum_probs=155.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCC--ceeee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDG--RLLTV 233 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~g--r~l~V 233 (339)
.-....|||.+||..+|..+|..+|++||.|..-||..+.-+|.+||.|||.|....+|+.|+..|||..-.| .+|.|
T Consensus 124 ~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItV 203 (360)
T KOG0145|consen 124 SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITV 203 (360)
T ss_pred hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEE
Confidence 3356689999999999999999999999999999999999999999999999999999999999999988766 57888
Q ss_pred eccCCCCCCCC----------CCC----------C-----------------------------------CCCCCceEEe
Q 019542 234 NKAAPRGTQPE----------RAP----------R-----------------------------------VFEPGFRIYV 258 (339)
Q Consensus 234 ~~a~~~~~~~~----------~~~----------~-----------------------------------~~~~~~~l~V 258 (339)
..+........ +.. + ....+..|||
T Consensus 204 KFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFv 283 (360)
T KOG0145|consen 204 KFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFV 283 (360)
T ss_pred EecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEE
Confidence 87765421100 000 0 0112458999
Q ss_pred cCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecccc
Q 019542 259 GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334 (339)
Q Consensus 259 ~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~~ 334 (339)
-||..+.++.-||++|.+||.|..|+|+||..++++||||||.+.+-++|..|+..|||-.+++|.|.|+|...++
T Consensus 284 YNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 284 YNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred EecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999976654
No 22
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=2e-24 Score=187.92 Aligned_cols=151 Identities=28% Similarity=0.564 Sum_probs=140.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCC
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 239 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~ 239 (339)
.+|||||||..+++.+|+.+|.+||+|..|.|+ |.||||..++...+..|+..||++.|+|..|+|+.+.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 369999999999999999999999999999998 569999999999999999999999999999999988776
Q ss_pred CCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 019542 240 GTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 319 (339)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~ 319 (339)
.+ ..++|+|+||.+.++.++|+..|.+||.|..|.|+++ |+||.|.-.++|..|++.|+|..
T Consensus 75 sk----------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 75 SK----------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred CC----------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccc
Confidence 32 3348999999999999999999999999999999854 99999999999999999999999
Q ss_pred eCCeEEEEEEecccccC
Q 019542 320 LDGRAIRVNVAEDRQRR 336 (339)
Q Consensus 320 l~gr~l~V~~a~~~~~~ 336 (339)
+.|++++|+++..|-|.
T Consensus 137 ~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRLRT 153 (346)
T ss_pred cccceeeeeeecccccc
Confidence 99999999999887664
No 23
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.91 E-value=1.7e-23 Score=201.31 Aligned_cols=172 Identities=30% Similarity=0.481 Sum_probs=150.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCC---CCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRET---DRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 162 vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~---g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
|||.||+|+++.++|..+|...|.|..+.|...++. -.+.|||||+|.++++|+.|++.|+|..++|+.|.|.++..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 999999999999999999999999999988876653 23459999999999999999999999999999999999984
Q ss_pred CCCCCC-CCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 019542 239 RGTQPE-RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 317 (339)
Q Consensus 239 ~~~~~~-~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g 317 (339)
++.... +.......++.|.|+|||+..+..+|+.+|..||.|..|+|+.....+.++|||||.|-++.+|..|+.+|.+
T Consensus 598 k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~S 677 (725)
T KOG0110|consen 598 KPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGS 677 (725)
T ss_pred ccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcc
Confidence 433222 1122233467999999999999999999999999999999998755677899999999999999999999999
Q ss_pred CeeCCeEEEEEEeccc
Q 019542 318 QNLDGRAIRVNVAEDR 333 (339)
Q Consensus 318 ~~l~gr~l~V~~a~~~ 333 (339)
..|.||+|-+.||+..
T Consensus 678 THlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 678 THLYGRRLVLEWAKSD 693 (725)
T ss_pred cceechhhheehhccc
Confidence 9999999999999764
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=2.8e-24 Score=192.04 Aligned_cols=175 Identities=19% Similarity=0.392 Sum_probs=156.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
-++||||.+.|...++.|+..|..||+|.+|.+-.++.|++.||||||+|+-++.|+-|++.+|+..++||.|+|.+..+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999996665
Q ss_pred CCCCCCCCC---CCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 019542 239 RGTQPERAP---RVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315 (339)
Q Consensus 239 ~~~~~~~~~---~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l 315 (339)
.+....--. .....-++|||..+..+++++||+.+|+.||+|.+|.+.+++..+..|||+||+|.+..+...|+..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 543221100 01122348999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeCCeEEEEEEeccc
Q 019542 316 DGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 316 ~g~~l~gr~l~V~~a~~~ 333 (339)
|-..++|..|+|-.+-..
T Consensus 273 NlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred chhhcccceEecccccCC
Confidence 999999999999877543
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.5e-22 Score=189.93 Aligned_cols=154 Identities=31% Similarity=0.496 Sum_probs=143.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCC
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 239 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~ 239 (339)
..|||| +++|+..|.++|+++|+|.+++++++. | +-|||||.|.++.+|.+|+..+|...+.|++|++.++...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 999999999999999999999999998 6 9999999999999999999999999999999999988765
Q ss_pred CCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 019542 240 GTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 319 (339)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~ 319 (339)
+. .|||.||+..++...|..+|+.||.|.+|++..+. .| ++|| ||+|.+.++|.+|+..+||..
T Consensus 76 ~~-------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 76 PS-------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred Cc-------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 54 39999999999999999999999999999999995 45 9999 999999999999999999999
Q ss_pred eCCeEEEEEEeccccc
Q 019542 320 LDGRAIRVNVAEDRQR 335 (339)
Q Consensus 320 l~gr~l~V~~a~~~~~ 335 (339)
+.|+.|.|.....+.-
T Consensus 140 l~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEE 155 (369)
T ss_pred cCCCeeEEeeccchhh
Confidence 9999999988876543
No 26
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.88 E-value=1.3e-22 Score=184.39 Aligned_cols=174 Identities=32% Similarity=0.567 Sum_probs=159.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
+.++||||+|+|+++++.|+.+|.+||.|..+.+.+++.+++++||+||+|.+.+.+..++.. ..+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 578999999999999999999999999999999999999999999999999999999999887 7788999999999999
Q ss_pred CCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 019542 238 PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 317 (339)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g 317 (339)
++..+....... ...+|||++||.++++++++++|.+||.|..+.++.|..+.+++||+||.|.+.+++.+++. .+-
T Consensus 84 ~r~~~~~~~~~~--~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f 160 (311)
T KOG4205|consen 84 SREDQTKVGRHL--RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKF 160 (311)
T ss_pred Cccccccccccc--ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cce
Confidence 887665443222 45589999999999999999999999999999999999999999999999999999999988 789
Q ss_pred CeeCCeEEEEEEeccccc
Q 019542 318 QNLDGRAIRVNVAEDRQR 335 (339)
Q Consensus 318 ~~l~gr~l~V~~a~~~~~ 335 (339)
+.|+|+.+.|..|.++.-
T Consensus 161 ~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 161 HDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred eeecCceeeEeeccchhh
Confidence 999999999999988754
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.8e-22 Score=172.19 Aligned_cols=139 Identities=37% Similarity=0.641 Sum_probs=121.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..+|||||||..++|++-|..+|.+.|.|..++++.+ .|.|.++.
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNWAT 49 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhcccccc
Confidence 4589999999999999999999999999999999865 34555554
Q ss_pred CCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 019542 238 PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 317 (339)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g 317 (339)
....+... .......+||+.|...++-++|++.|.+||.|..++|+||..|+++|||+||.|.+.++|+.||..|||
T Consensus 50 ~p~nQsk~---t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnG 126 (321)
T KOG0148|consen 50 APGNQSKP---TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNG 126 (321)
T ss_pred CcccCCCC---ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCC
Confidence 44222111 222356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeCCeEEEEEEecccc
Q 019542 318 QNLDGRAIRVNVAEDRQ 334 (339)
Q Consensus 318 ~~l~gr~l~V~~a~~~~ 334 (339)
.=|++|.||..||..++
T Consensus 127 qWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 127 QWLGRRTIRTNWATRKP 143 (321)
T ss_pred eeeccceeeccccccCc
Confidence 99999999999998776
No 28
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.7e-21 Score=167.84 Aligned_cols=181 Identities=29% Similarity=0.500 Sum_probs=154.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcc-cCC--ceeeee
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYD-IDG--RLLTVN 234 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~-l~g--r~l~V~ 234 (339)
..++||||.|.....+++++.+|..||.|..|.+.+.++ |.+||+|||.|.+..+|..|+..|||.. +.| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 578999999999999999999999999999999998877 9999999999999999999999999854 333 456666
Q ss_pred ccCCCCCC------------------------------------------------------------------------
Q 019542 235 KAAPRGTQ------------------------------------------------------------------------ 242 (339)
Q Consensus 235 ~a~~~~~~------------------------------------------------------------------------ 242 (339)
++...+.+
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 65432200
Q ss_pred ------------C--------------------------------------------CC---------------------
Q 019542 243 ------------P--------------------------------------------ER--------------------- 245 (339)
Q Consensus 243 ------------~--------------------------------------------~~--------------------- 245 (339)
+ ..
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0 00
Q ss_pred ---------------------CCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCC
Q 019542 246 ---------------------APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS 304 (339)
Q Consensus 246 ---------------------~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~ 304 (339)
..+....++.|||-.||....+.+|.++|-+||.|.+.++..|+.|+.+|.|+||.|.|
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 00001236789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeeCCeEEEEEEecccccCCCC
Q 019542 305 ETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 339 (339)
Q Consensus 305 ~e~A~~Al~~l~g~~l~gr~l~V~~a~~~~~~s~~ 339 (339)
..+|..||.+|||..|+-++|+|++.+++.-.+.|
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanRPY 371 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 371 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccccCCCC
Confidence 99999999999999999999999999988876665
No 29
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=2.8e-22 Score=188.29 Aligned_cols=178 Identities=28% Similarity=0.481 Sum_probs=155.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
...+|||+--|+...+.-+|.+||+.+|.|..|+++.+..+++++|.|||+|.+.+.+..|+.+ .|..+.|.+|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL-sGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL-SGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhh-cCCcccCceeEeccc
Confidence 3567999999999999999999999999999999999999999999999999999999999965 999999999999865
Q ss_pred CCCCCCCCCC------CCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHH
Q 019542 237 APRGTQPERA------PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 310 (339)
Q Consensus 237 ~~~~~~~~~~------~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~ 310 (339)
.......... .....|-.+||||||.+.+++++|+.+|++||.|..|.+.+|..+|+++||+||+|.+.++|.+
T Consensus 256 Eaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~ 335 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARK 335 (549)
T ss_pred HHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHH
Confidence 4332211111 1112233349999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHhCCCeeCCeEEEEEEeccccc
Q 019542 311 AIAALDGQNLDGRAIRVNVAEDRQR 335 (339)
Q Consensus 311 Al~~l~g~~l~gr~l~V~~a~~~~~ 335 (339)
|+..|||..|.||.|+|..-..+..
T Consensus 336 a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 336 ALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred HHHHhccceecCceEEEEEeeeecc
Confidence 9999999999999999998766544
No 30
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.84 E-value=3.5e-19 Score=175.18 Aligned_cols=81 Identities=17% Similarity=0.433 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..++|||+|||+++++++|+++|+.||.|..+++.++..+|+++|||||+|.+.++|.+|+..+|+..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred C
Q 019542 238 P 238 (339)
Q Consensus 238 ~ 238 (339)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 31
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=4.4e-20 Score=173.41 Aligned_cols=167 Identities=25% Similarity=0.438 Sum_probs=152.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCCCC
Q 019542 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 241 (339)
Q Consensus 162 vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~~~ 241 (339)
|||.||+.+++...|.++|+.||.|.+|++.++.. | ++|| ||+|.+.+.|.+|+..+||..+.|+.|.|.....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999999999999999999999999876 4 9999 9999999999999999999999999999999888776
Q ss_pred CCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 019542 242 QPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD 321 (339)
Q Consensus 242 ~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~ 321 (339)
+..+.......-+.++|.|++.+.+++.|..+|..+|.|..+.++.+ ..|+++||+||.|.+.++|..|+..||+..++
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~-~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~ 234 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRD-SIGKSKGFGFVNFENPEDAKKAVETLNGKIFG 234 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeec-CCCCCCCccceeecChhHHHHHHHhccCCcCC
Confidence 65554443344468999999999999999999999999999999998 45779999999999999999999999999999
Q ss_pred CeEEEEEEecc
Q 019542 322 GRAIRVNVAED 332 (339)
Q Consensus 322 gr~l~V~~a~~ 332 (339)
|..+.|..++.
T Consensus 235 ~~~~~V~~aqk 245 (369)
T KOG0123|consen 235 DKELYVGRAQK 245 (369)
T ss_pred ccceeeccccc
Confidence 99999988765
No 32
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=7e-20 Score=167.31 Aligned_cols=180 Identities=26% Similarity=0.439 Sum_probs=154.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcc-cC--Cceee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYD-ID--GRLLT 232 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~-l~--gr~l~ 232 (339)
...+++||||-|+..+++.+++++|.+||.|+.|.|.++.+ +.+||+|||.|.+++-|..|++.+|+.. +. ..+|.
T Consensus 121 ~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 121 IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV 199 (510)
T ss_pred cccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence 35678999999999999999999999999999999999887 9999999999999999999999999854 43 46788
Q ss_pred eeccCCCCCCCCCC------------------------------------------------------------------
Q 019542 233 VNKAAPRGTQPERA------------------------------------------------------------------ 246 (339)
Q Consensus 233 V~~a~~~~~~~~~~------------------------------------------------------------------ 246 (339)
|.+|.++.....+.
T Consensus 200 VkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~ 279 (510)
T KOG0144|consen 200 VKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAA 279 (510)
T ss_pred EEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHH
Confidence 88887554110000
Q ss_pred -------------------------------C---------CC-------------------------------------
Q 019542 247 -------------------------------P---------RV------------------------------------- 249 (339)
Q Consensus 247 -------------------------------~---------~~------------------------------------- 249 (339)
+ ..
T Consensus 280 ~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp 359 (510)
T KOG0144|consen 280 LAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSP 359 (510)
T ss_pred hhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCc
Confidence 0 00
Q ss_pred -------------------------------------------------------------CCCCceEEecCCCccccHH
Q 019542 250 -------------------------------------------------------------FEPGFRIYVGNLPWEVDNA 268 (339)
Q Consensus 250 -------------------------------------------------------------~~~~~~l~V~nLp~~~tee 268 (339)
...+..+||.+||.+.-+.
T Consensus 360 ~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq 439 (510)
T KOG0144|consen 360 VAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQ 439 (510)
T ss_pred ccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhH
Confidence 0012269999999999999
Q ss_pred HHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecccccC
Q 019542 269 RLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336 (339)
Q Consensus 269 ~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~~~~ 336 (339)
+|-..|.+||.|....+..|+.||.++.|+||.|++..+|..||..|||..|++++|+|++.+++..+
T Consensus 440 ~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np 507 (510)
T KOG0144|consen 440 DLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNP 507 (510)
T ss_pred HHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998776543
No 33
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=2.9e-18 Score=140.88 Aligned_cols=85 Identities=47% Similarity=0.852 Sum_probs=80.7
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
...++|||+|||+.+++++|+++|.+||.|..++|++++.+++++|||||+|.+.++|.+|+..||+..|+|+.|+|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 019542 331 EDRQR 335 (339)
Q Consensus 331 ~~~~~ 335 (339)
.+++.
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 87764
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=2.4e-17 Score=135.13 Aligned_cols=162 Identities=28% Similarity=0.415 Sum_probs=133.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
.+++|||||||.++.+.+|.++|-+||.|..|.+... ....+||||+|+++.+|+.|+..-+++.++|..|+|..+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 3689999999999999999999999999999888532 3457799999999999999999999999999999999886
Q ss_pred CCCCCCCCC------------------CCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEE
Q 019542 238 PRGTQPERA------------------PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 299 (339)
Q Consensus 238 ~~~~~~~~~------------------~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~af 299 (339)
......... +-.-.+.++|.|.+||...+.++|+....+.|.|+...+.+| |++.
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~Gv 154 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGV 154 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------ccee
Confidence 543211110 011123458999999999999999999999999999999877 4799
Q ss_pred EEeCCHHHHHHHHHHhCCCee--CCeEEEEEE
Q 019542 300 VTMSSETELNDAIAALDGQNL--DGRAIRVNV 329 (339)
Q Consensus 300 V~F~~~e~A~~Al~~l~g~~l--~gr~l~V~~ 329 (339)
|.|-..++..-|++.|+...+ .|-...+.+
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 999999999999999998776 344444433
No 35
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.77 E-value=1.2e-17 Score=155.32 Aligned_cols=170 Identities=20% Similarity=0.288 Sum_probs=139.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
......|.+++|||++|+++|.+||+.|+ |+++ +....+|+..|-|||+|.+.+++.+|++. +...+..|.|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~--~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENL--EIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEE--EEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEc
Confidence 34567899999999999999999999996 6664 44456799999999999999999999998 99999999999998
Q ss_pred cCCCCCCCCCCC---CCCCCCceEEecCCCccccHHHHHHHHhccCceEE-EEEeeeCCCCCcceEEEEEeCCHHHHHHH
Q 019542 236 AAPRGTQPERAP---RVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVN-ARVVYDRETGRSRGFGFVTMSSETELNDA 311 (339)
Q Consensus 236 a~~~~~~~~~~~---~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~-v~i~~d~~~~~~kg~afV~F~~~e~A~~A 311 (339)
+........... ....+-..|.+++|||.|++++|.++|+-.--|.. +.++.+ ..+++.|-|||+|.+.+.|++|
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIA 161 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHH
Confidence 866554322211 11133458999999999999999999998766665 445666 5688999999999999999999
Q ss_pred HHHhCCCeeCCeEEEEEEec
Q 019542 312 IAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 312 l~~l~g~~l~gr~l~V~~a~ 331 (339)
|. -|...|+.|.|.|-.+.
T Consensus 162 l~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 162 LG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred HH-HHHHhhccceEEeehhH
Confidence 99 58888999999887653
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.75 E-value=6.5e-17 Score=137.37 Aligned_cols=166 Identities=21% Similarity=0.387 Sum_probs=141.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 158 EDAKLFVGNLPYDVDSEKLAM----LFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~----~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
+..||||.||+-.+..++|+. +|++||.|..|.... +.+.+|-|||.|.+.+.|-.|+..|+|..+.|+.+++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 445999999999999999888 999999999887763 4678999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCC------------------------------------------CCCCCCCceEEecCCCccccHHHHH
Q 019542 234 NKAAPRGTQPERA------------------------------------------PRVFEPGFRIYVGNLPWEVDNARLE 271 (339)
Q Consensus 234 ~~a~~~~~~~~~~------------------------------------------~~~~~~~~~l~V~nLp~~~tee~L~ 271 (339)
.||..+...-.+. .....+...+|+.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 9997653211100 0113456789999999999999999
Q ss_pred HHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEEEec
Q 019542 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD-GRAIRVNVAE 331 (339)
Q Consensus 272 ~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~-gr~l~V~~a~ 331 (339)
.+|..|.....++++... +|.|||+|.+...|..|...+.|..+- ...+.|.+++
T Consensus 165 ~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999998653 789999999999999999999999886 7888888764
No 37
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.75 E-value=1.1e-16 Score=142.88 Aligned_cols=175 Identities=18% Similarity=0.350 Sum_probs=141.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCee--------EEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccC
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVE--------IAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDID 227 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~--------~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~ 227 (339)
+.....|||.|||.++|.+++..+|+.||.|. .|++.++.+ |..||-|.+.|-..+++.-|+..|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 33455699999999999999999999999876 567877776 999999999999999999999999999999
Q ss_pred CceeeeeccCCCCCCC-----------------------------C-CCCCCCCCCceEEecCCCcc----cc-------
Q 019542 228 GRLLTVNKAAPRGTQP-----------------------------E-RAPRVFEPGFRIYVGNLPWE----VD------- 266 (339)
Q Consensus 228 gr~l~V~~a~~~~~~~-----------------------------~-~~~~~~~~~~~l~V~nLp~~----~t------- 266 (339)
|+.|+|..|....... . ..+......++|.++|+=.. .+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999999885321110 0 01112233468999997321 12
Q ss_pred HHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccccc
Q 019542 267 NARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 335 (339)
Q Consensus 267 ee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~~~ 335 (339)
.++|++-+.+||.|.+|.|. + ..+.|.+-|.|.+.++|..|++.|+|.-++||.|..++...+.+
T Consensus 290 kedl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred HHHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 37788889999999999764 3 45689999999999999999999999999999999998766554
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.73 E-value=3e-17 Score=154.60 Aligned_cols=252 Identities=22% Similarity=0.288 Sum_probs=170.9
Q ss_pred CCCCCccCCCCCceeEeeccCcccCCCcceeecccccccceeeeccccccccccccccccccccccccccccCCCCCCcc
Q 019542 30 RNPYFSIHPRPRPIKLHLSDSSLSSKGFSFKLKKTTHFSSFTTFVAQTSDWADQEEDKDNTTITLEQEQEENGEEEPNWE 109 (339)
Q Consensus 30 ~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~eee~e~e~~ee~~~e 109 (339)
+++..||++-..-..|.+-....+ --.||.+|+-|-..-..+.++++.-.-.-+..+-..-.+
T Consensus 194 RdL~efFs~~gkVrdVriI~Dr~s------~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sE----------- 256 (549)
T KOG0147|consen 194 RDLEEFFSIVGKVRDVRIIGDRNS------RRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSE----------- 256 (549)
T ss_pred hhHHHHHHhhcCcceeEeeccccc------hhhcceeEEEEecccchhhHhhhcCCcccCceeEecccH-----------
Confidence 677888887665556666544311 227899999998776777777665444333222111000
Q ss_pred CCCCccccCCCCCCCCCCCCcccccccccccccccCCcccccccCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEE
Q 019542 110 NQGADETEGNLSDWGEPEGEDTVVEAGERQEESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIA 189 (339)
Q Consensus 110 ~~~~de~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v 189 (339)
.+... ..... ..-....-.-+-..|+||||-+++++++|+..|.+||.|..|
T Consensus 257 ------------------------aeknr-~a~~s---~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v 308 (549)
T KOG0147|consen 257 ------------------------AEKNR-AANAS---PALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENV 308 (549)
T ss_pred ------------------------HHHHH-HHhcc---ccccccccccchhhhhhcccccCchHHHHhhhccCcccceee
Confidence 00000 00000 000000111122339999999999999999999999999999
Q ss_pred EEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCCCCCCCCCCC---------C-----------
Q 019542 190 EVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR---------V----------- 249 (339)
Q Consensus 190 ~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~~~~~~~~~~---------~----------- 249 (339)
.+.++..+|+++|||||+|.+.++|.+|+..|||..|.||.|+|.....+......... .
T Consensus 309 ~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Q 388 (549)
T KOG0147|consen 309 QLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQ 388 (549)
T ss_pred eeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHH
Confidence 99999999999999999999999999999999999999999999765443221110000 0
Q ss_pred --------------------------------------------C-------CCCceEEecCC--Ccccc--------HH
Q 019542 250 --------------------------------------------F-------EPGFRIYVGNL--PWEVD--------NA 268 (339)
Q Consensus 250 --------------------------------------------~-------~~~~~l~V~nL--p~~~t--------ee 268 (339)
. .+.-++.+.|. |...| .+
T Consensus 389 l~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~e 468 (549)
T KOG0147|consen 389 LMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIRE 468 (549)
T ss_pred HHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHH
Confidence 0 00111222222 11111 27
Q ss_pred HHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 269 RLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 269 ~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+|.+-+.+||+|..|.|..+ +-|+.||.|.+.+.|..|+.+|||.=|.|+.|...|-.
T Consensus 469 dV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 469 DVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred HHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 88899999999999988433 34999999999999999999999999999999999864
No 39
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.71 E-value=2.4e-16 Score=144.42 Aligned_cols=171 Identities=32% Similarity=0.545 Sum_probs=143.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFE-KAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~-~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
..+.+||.|+||++.+.+|+++|. +.|.|.+|.+..+.. |+++|+|.|+|++++.+++|++.||.+.++||.|.|+.-
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 346699999999999999999997 689999999987764 999999999999999999999999999999999999754
Q ss_pred CCCCCC---------------------------------------C-----CCCCC------------------------
Q 019542 237 APRGTQ---------------------------------------P-----ERAPR------------------------ 248 (339)
Q Consensus 237 ~~~~~~---------------------------------------~-----~~~~~------------------------ 248 (339)
...... . ....+
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 331100 0 00000
Q ss_pred ---------CCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 019542 249 ---------VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 319 (339)
Q Consensus 249 ---------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~ 319 (339)
..+-..++||.||.+.+....|++.|.-.|.|..+.+-.|+. |.++|+|.++|.++-.|..|+..+++.-
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCC
Confidence 001134799999999999999999999999999999999965 7999999999999999999999999988
Q ss_pred eCCeEEEEEEe
Q 019542 320 LDGRAIRVNVA 330 (339)
Q Consensus 320 l~gr~l~V~~a 330 (339)
+..++..+++.
T Consensus 281 ~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 281 LFDRRMTVRLD 291 (608)
T ss_pred Cccccceeecc
Confidence 88887777764
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=1.1e-16 Score=131.65 Aligned_cols=84 Identities=38% Similarity=0.589 Sum_probs=79.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
...+|||+|||+++++++|+++|.+||.|..+.++.+..+++++|||||+|.+.++|+.|+..+++..|.|+.|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCC
Q 019542 238 PRGT 241 (339)
Q Consensus 238 ~~~~ 241 (339)
.+..
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6654
No 41
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=3.8e-16 Score=151.00 Aligned_cols=169 Identities=25% Similarity=0.347 Sum_probs=136.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
.....|+|+|||..+..+.|...|..||.|.++.+. ..|. -|+|+|.++.+|.+|+..+....+...++.+.++
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp---~~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP---PGGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecC---cccc---eeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 345789999999999999999999999999998553 2122 3999999999999999999988888888877665
Q ss_pred CCCCCC--C--------CCCC--------------------C------------CCCCCceEEecCCCccccHHHHHHHH
Q 019542 237 APRGTQ--P--------ERAP--------------------R------------VFEPGFRIYVGNLPWEVDNARLEQVF 274 (339)
Q Consensus 237 ~~~~~~--~--------~~~~--------------------~------------~~~~~~~l~V~nLp~~~tee~L~~~F 274 (339)
...... + .... . .....++|||.||++..+.++|...|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 422111 0 0000 0 00112349999999999999999999
Q ss_pred hccCceEEEEEeeeCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 275 SEHGKVVNARVVYDRET---GRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 275 ~~~G~V~~v~i~~d~~~---~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
..+|.|..+.|...+.. -.+.|||||+|.+.++|+.|++.|+|..|+|+.|.|+++.
T Consensus 537 ~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 537 SKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999999998876432 2356999999999999999999999999999999999998
No 42
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=3.1e-16 Score=134.05 Aligned_cols=83 Identities=31% Similarity=0.488 Sum_probs=79.8
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
...+|.|.||+.++++.+|+++|.+||.|..+.|.+|++||.+||||||.|.++++|.+||..|||.-++.-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 019542 332 DRQ 334 (339)
Q Consensus 332 ~~~ 334 (339)
|+.
T Consensus 268 P~~ 270 (270)
T KOG0122|consen 268 PSN 270 (270)
T ss_pred CCC
Confidence 863
No 43
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=8.5e-16 Score=110.15 Aligned_cols=70 Identities=39% Similarity=0.797 Sum_probs=67.8
Q ss_pred EEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 019542 256 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 326 (339)
Q Consensus 256 l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~ 326 (339)
|||+|||..+++++|+++|+.||.|..+.+..+ .++.++|+|||+|.+.++|.+|+..|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 7799999999999999999999999999999999986
No 44
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.65 E-value=1.9e-15 Score=136.34 Aligned_cols=160 Identities=34% Similarity=0.565 Sum_probs=127.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
.++|||+|||+++++++|.++|.+||.|..+++..+..+|+++|||||.|.+.++|..|+..+++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999998999999999999999999999999999999999999999642
Q ss_pred ----CCCCCC------------CCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEe
Q 019542 239 ----RGTQPE------------RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTM 302 (339)
Q Consensus 239 ----~~~~~~------------~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F 302 (339)
+..... ...........+++++++..++...+...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 222210 0011233456899999999999999999999999997777765544444455555555
Q ss_pred CCHHHHHHHHHHhCCC
Q 019542 303 SSETELNDAIAALDGQ 318 (339)
Q Consensus 303 ~~~e~A~~Al~~l~g~ 318 (339)
.....+..+.......
T Consensus 275 ~~~~~~~~~~~~~~~~ 290 (306)
T COG0724 275 EASKDALESNSRGNKK 290 (306)
T ss_pred hHHHhhhhhhccccce
Confidence 5555555555543333
No 45
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.64 E-value=4.3e-15 Score=125.37 Aligned_cols=159 Identities=20% Similarity=0.263 Sum_probs=124.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEec-CCCCCcccEEEEEeccHHHHHHHHHHhCCcccC---Cceeee
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYN-RETDRSRGFGFVTMSTVEEAEKAVEMFHRYDID---GRLLTV 233 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~-~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~---gr~l~V 233 (339)
.-+||||.+||.|+...+|..+|+.|--.+...+... +....|+.+||+.|.+...|..|+..|||..|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4589999999999999999999999976666666543 333457899999999999999999999999884 788888
Q ss_pred eccCCCCCCCCCCCCC----------------------------------------------------------------
Q 019542 234 NKAAPRGTQPERAPRV---------------------------------------------------------------- 249 (339)
Q Consensus 234 ~~a~~~~~~~~~~~~~---------------------------------------------------------------- 249 (339)
+.|..+.....+....
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 8776543211100000
Q ss_pred --------------CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 019542 250 --------------FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315 (339)
Q Consensus 250 --------------~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l 315 (339)
...+.+|||.||...+++++|+.+|+.|.....++|.-. .| ...|||.|...+.|..|+..|
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHh
Confidence 011348999999999999999999999988777776322 23 447999999999999999999
Q ss_pred CCCee
Q 019542 316 DGQNL 320 (339)
Q Consensus 316 ~g~~l 320 (339)
.|..|
T Consensus 269 qg~~~ 273 (284)
T KOG1457|consen 269 QGNLL 273 (284)
T ss_pred hccee
Confidence 99876
No 46
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=5.3e-16 Score=133.10 Aligned_cols=155 Identities=28% Similarity=0.499 Sum_probs=131.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCC
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 239 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~ 239 (339)
..||||+||+.+.+.+|..||..||.|..+.+. .||+||+|.+..+|..|+..+++..|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 368999999999999999999999999988875 689999999999999999999999999999999988753
Q ss_pred CCCC------CC------CCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHH
Q 019542 240 GTQP------ER------APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 307 (339)
Q Consensus 240 ~~~~------~~------~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~ 307 (339)
.-.. .. ........+.++|.|++..+..++|...|.++|.+....+ ..+++||+|.+.++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 1111 00 0011234568999999999999999999999999966554 26689999999999
Q ss_pred HHHHHHHhCCCeeCCeEEEEEEe
Q 019542 308 LNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 308 A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
|.+|+..|+|..+.|+.|.+...
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999543
No 47
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.63 E-value=2.1e-15 Score=141.02 Aligned_cols=84 Identities=27% Similarity=0.472 Sum_probs=79.8
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
....++|||+|||+++++++|+++|..||.|..|+|++++.+++++|||||+|.+.++|.+|+..|||..+.++.|+|.|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 019542 330 AEDR 333 (339)
Q Consensus 330 a~~~ 333 (339)
+++.
T Consensus 184 a~p~ 187 (346)
T TIGR01659 184 ARPG 187 (346)
T ss_pred cccc
Confidence 8764
No 48
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.6e-15 Score=133.08 Aligned_cols=83 Identities=28% Similarity=0.446 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
.+-+||||+.|++++++..|+..|..||+|..|+|+.++.||+++|||||+|+...++..|.+..+|..|+|+.|-|++-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCC
Q 019542 237 APR 239 (339)
Q Consensus 237 ~~~ 239 (339)
-..
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 543
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=4.2e-15 Score=106.49 Aligned_cols=70 Identities=40% Similarity=0.697 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceee
Q 019542 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232 (339)
Q Consensus 162 vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~ 232 (339)
|||+|||.++++++|+++|++||.|..+.+..+ .+++.+|||||+|.+.++|.+|+..+++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 6789999999999999999999999999999999986
No 50
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=8.3e-15 Score=105.36 Aligned_cols=70 Identities=39% Similarity=0.761 Sum_probs=65.4
Q ss_pred EEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 019542 256 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 326 (339)
Q Consensus 256 l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~ 326 (339)
|||+|||+.+++++|+++|+.||.|..+.+.+++. |.++|+|||+|.+.++|.+|+..++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 99999999999999999999999999999999985
No 51
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=2.7e-15 Score=127.88 Aligned_cols=77 Identities=36% Similarity=0.674 Sum_probs=72.9
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
++||||||+|.+..+.|+++|+.||.|....|+.|+.+|++||||||+|++.++|.+|++ --+-.|+||+..+.+|.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhh
Confidence 589999999999999999999999999999999999999999999999999999999999 45678999999999874
No 52
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=5.1e-15 Score=126.23 Aligned_cols=80 Identities=38% Similarity=0.537 Sum_probs=75.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
-.+||||+|+|.+..+.|+++|.+||+|..+.++.++.+|++||||||+|++.++|.+|++. .+-.|+||+..|+.|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 35799999999999999999999999999999999999999999999999999999999998 66789999999998876
Q ss_pred C
Q 019542 239 R 239 (339)
Q Consensus 239 ~ 239 (339)
.
T Consensus 91 g 91 (247)
T KOG0149|consen 91 G 91 (247)
T ss_pred c
Confidence 3
No 53
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.58 E-value=1.5e-14 Score=142.34 Aligned_cols=118 Identities=24% Similarity=0.378 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhCCcccCCceeeeeccCCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCC
Q 019542 211 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRE 290 (339)
Q Consensus 211 ~e~a~~Al~~~~~~~l~gr~l~V~~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~ 290 (339)
.+.|.+|+..++++.+........+..+..... ......+++|||+|||+++++++|+++|++||.|..++|++| .
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~---~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~ 94 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPPPGWS---GVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-F 94 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCCCccc---CCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-C
Confidence 578888998889988877777666664443321 112334679999999999999999999999999999999999 8
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEEEecc
Q 019542 291 TGRSRGFGFVTMSSETELNDAIAALDGQNLD-GRAIRVNVAED 332 (339)
Q Consensus 291 ~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~-gr~l~V~~a~~ 332 (339)
+|+++|||||+|.+.++|.+||..||+..+. |+.|.|.++..
T Consensus 95 sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 95 SGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 8999999999999999999999999999884 88888876643
No 54
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.57 E-value=7.5e-14 Score=127.31 Aligned_cols=165 Identities=25% Similarity=0.383 Sum_probs=136.4
Q ss_pred CCeEEEcCCC-CCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 159 DAKLFVGNLP-YDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 159 ~~~vfVgnLp-~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..+|-|.||. ..+|.+.|..+|+-||.|.+|+|..++. -.|+|+|.+...|+-|+..|+|+.+.|+.|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 5788899887 5679999999999999999999997653 469999999999999999999999999999999887
Q ss_pred CCCCCCCC--------------------------CCC-CCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCC
Q 019542 238 PRGTQPER--------------------------APR-VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRE 290 (339)
Q Consensus 238 ~~~~~~~~--------------------------~~~-~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~ 290 (339)
+..-...+ +.. ...|+.+|.+.|+|..+++++|+..|...|...+.....
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff--- 448 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF--- 448 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---
Confidence 55322111 001 134567999999999999999999999988765554332
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe-EEEEEEecc
Q 019542 291 TGRSRGFGFVTMSSETELNDAIAALDGQNLDGR-AIRVNVAED 332 (339)
Q Consensus 291 ~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr-~l~V~~a~~ 332 (339)
++.+-+|++++.+.++|..|+..+|++.+++. .|||+|++.
T Consensus 449 -~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 -QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred -CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 33456899999999999999999999999765 999999875
No 55
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=6.5e-15 Score=113.94 Aligned_cols=83 Identities=24% Similarity=0.384 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
..++|||||||++.+++++|.++|+.||+|..|.|-.++.+..+.|||||+|-+.++|..|++.+++..+..++|++++-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCC
Q 019542 237 APR 239 (339)
Q Consensus 237 ~~~ 239 (339)
...
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 543
No 56
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=8.5e-15 Score=113.28 Aligned_cols=79 Identities=29% Similarity=0.495 Sum_probs=75.8
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
..++|||+||.+.+++++|+++|++.|.|..|.+-.|+.+..+.|||||+|-+.++|..|++-++|..++.+.|+|.|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 3459999999999999999999999999999999999999999999999999999999999999999999999999985
No 57
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.4e-14 Score=128.66 Aligned_cols=79 Identities=37% Similarity=0.680 Sum_probs=74.0
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccc
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~ 333 (339)
++|+|.|||+..-+.||+.+|.+||.|.+|.|+.+ + .-+||||||+|.+.++|.+|..+|||..+.||+|.|..|..|
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN-E-RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN-E-RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEec-c-CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 48999999999999999999999999999999987 3 457999999999999999999999999999999999999776
Q ss_pred c
Q 019542 334 Q 334 (339)
Q Consensus 334 ~ 334 (339)
-
T Consensus 175 V 175 (376)
T KOG0125|consen 175 V 175 (376)
T ss_pred h
Confidence 4
No 58
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=5.7e-16 Score=126.80 Aligned_cols=84 Identities=31% Similarity=0.614 Sum_probs=79.1
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
..-|||||||+.+|+.||.-+|+.||.|..|+++||+.||+++||||++|++.-+..-|+..|||..|.||.|+|.....
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred cccC
Q 019542 333 RQRR 336 (339)
Q Consensus 333 ~~~~ 336 (339)
.+.+
T Consensus 115 Yk~p 118 (219)
T KOG0126|consen 115 YKKP 118 (219)
T ss_pred ccCC
Confidence 5554
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.55 E-value=2.3e-14 Score=103.04 Aligned_cols=70 Identities=39% Similarity=0.702 Sum_probs=65.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceee
Q 019542 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232 (339)
Q Consensus 162 vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~ 232 (339)
|||+|||+++++++|+++|..+|.|..+++..+++ |+++|+|||+|.+.++|.+|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999988 99999999999999999999999999999999885
No 60
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.55 E-value=2.7e-14 Score=125.74 Aligned_cols=77 Identities=18% Similarity=0.309 Sum_probs=71.4
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
.++|||+|||+.+++++|+++|+.||.|.+|+|++++. ++|||||+|.+.++|..||. |||..|.||.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 35899999999999999999999999999999998853 57999999999999999996 999999999999999974
Q ss_pred c
Q 019542 333 R 333 (339)
Q Consensus 333 ~ 333 (339)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 61
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.54 E-value=7.3e-15 Score=122.67 Aligned_cols=80 Identities=36% Similarity=0.579 Sum_probs=77.3
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
.-++|.|-||-+.++.++|+.+|++||.|.+|.|++|+-|+.++|||||.|....+|++|+.+|+|..|+|+.|+|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999986
No 62
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.8e-14 Score=122.17 Aligned_cols=84 Identities=29% Similarity=0.475 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
-....+|.|.|||.++++.+|+++|.+||.|.++.+.+++.||.+||||||.|.+.++|.+|+..|||+-+++-.|+|.+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 33678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 019542 236 AAPR 239 (339)
Q Consensus 236 a~~~ 239 (339)
+.++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9765
No 63
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.53 E-value=3.6e-13 Score=123.76 Aligned_cols=71 Identities=35% Similarity=0.587 Sum_probs=66.9
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
+|||+|||+++|.+.|+.-|..||.|.++.|. +.|+++| .|+|.++++|.+|++.|+|..+.||.|.|.|.
T Consensus 538 qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 538 QIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred EEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 89999999999999999999999999999994 5688887 79999999999999999999999999999984
No 64
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=8.2e-14 Score=133.06 Aligned_cols=176 Identities=17% Similarity=0.288 Sum_probs=142.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
.....+||++||...++..++++...||.+...+++.+..+|.++||||.+|.++.....|+..+||..+.+..|.|..|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCC----------------CCCCCceEEecCCC--ccc-c-------HHHHHHHHhccCceEEEEEeee-C
Q 019542 237 APRGTQPERAPR----------------VFEPGFRIYVGNLP--WEV-D-------NARLEQVFSEHGKVVNARVVYD-R 289 (339)
Q Consensus 237 ~~~~~~~~~~~~----------------~~~~~~~l~V~nLp--~~~-t-------ee~L~~~F~~~G~V~~v~i~~d-~ 289 (339)
............ ...+...|.+.|+= ..+ + -|+|+.-|.+||.|..|.|+++ .
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 765433222111 11222334444431 010 1 1668888899999999999988 2
Q ss_pred --CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 290 --ETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 290 --~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
....+.|-.||+|.+.+++++|+.+|+|..+.||+|-..|..+
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 3345678899999999999999999999999999999988643
No 65
>PLN03213 repressor of silencing 3; Provisional
Probab=99.51 E-value=5.6e-14 Score=130.83 Aligned_cols=78 Identities=28% Similarity=0.490 Sum_probs=72.2
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCH--HHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE--TELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~--e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
.+.+||||||++.+++++|+.+|..||.|..|.|+ +.+| ||||||+|.+. .++.+|+..|||..+.||.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45699999999999999999999999999999999 4566 99999999987 789999999999999999999999
Q ss_pred eccc
Q 019542 330 AEDR 333 (339)
Q Consensus 330 a~~~ 333 (339)
|+++
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9875
No 66
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=8.3e-14 Score=122.42 Aligned_cols=84 Identities=30% Similarity=0.608 Sum_probs=79.1
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.|=+||||+-|++++++..|+..|+.||.|+.|+|+++..||+++|||||+|++.-+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cccc
Q 019542 331 EDRQ 334 (339)
Q Consensus 331 ~~~~ 334 (339)
..+.
T Consensus 179 RgRT 182 (335)
T KOG0113|consen 179 RGRT 182 (335)
T ss_pred cccc
Confidence 6553
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.50 E-value=1.3e-13 Score=121.38 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
.++|||+|||+.+++++|++||+.||.|.+|+|+.+.. .+|||||+|.+.++|..|+. |+|..|.||.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999987754 57999999999999999996 799999999999999875
Q ss_pred CCC
Q 019542 239 RGT 241 (339)
Q Consensus 239 ~~~ 241 (339)
...
T Consensus 80 ~~~ 82 (260)
T PLN03120 80 YQL 82 (260)
T ss_pred CCC
Confidence 543
No 68
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=3.1e-13 Score=124.64 Aligned_cols=121 Identities=27% Similarity=0.421 Sum_probs=97.0
Q ss_pred cHHHHHHHHHHhCCcccCCceeeeeccCCCCCCCCCC--CCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEee
Q 019542 210 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA--PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVY 287 (339)
Q Consensus 210 ~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~~~~~~~~--~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~ 287 (339)
+.+++.++|..-. |..|.|.....+-..+.+. ......++.||||.||.++.+++|.-+|++.|+|-.+||++
T Consensus 43 ~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMm 117 (506)
T KOG0117|consen 43 SEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMM 117 (506)
T ss_pred cHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEee
Confidence 4566777766523 4556666554443332222 12235578999999999999999999999999999999999
Q ss_pred eCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee-CCeEEEEEEeccccc
Q 019542 288 DRETGRSRGFGFVTMSSETELNDAIAALDGQNL-DGRAIRVNVAEDRQR 335 (339)
Q Consensus 288 d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l-~gr~l~V~~a~~~~~ 335 (339)
|+.+|.+||||||+|.+.+.|++|++.||+..| .|+.|.|..+..+-|
T Consensus 118 D~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~R 166 (506)
T KOG0117|consen 118 DPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCR 166 (506)
T ss_pred cccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecce
Confidence 999999999999999999999999999999998 699999998876543
No 69
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=4.7e-15 Score=121.42 Aligned_cols=86 Identities=22% Similarity=0.465 Sum_probs=80.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
..+.-|||||||++.|+.+|.-.|++||.|+.|.+++++.||+++||||+.|++..+..-|+..|||..|.||.|+|++.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCC
Q 019542 237 APRGTQ 242 (339)
Q Consensus 237 ~~~~~~ 242 (339)
......
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 766543
No 70
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=8.1e-13 Score=124.30 Aligned_cols=157 Identities=20% Similarity=0.328 Sum_probs=117.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCC--CCccc---EEEEEeccHHHHHHHHHHhCCcccCCc
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRET--DRSRG---FGFVTMSTVEEAEKAVEMFHRYDIDGR 229 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~--g~~kg---~afV~f~~~e~a~~Al~~~~~~~l~gr 229 (339)
.+.-+++||||+||++++++.|...|..||.+..-.-.+.... -.++| |+|+.|++...++.-+..+.. ...
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 3445789999999999999999999999998643222111111 23466 999999999998887766543 222
Q ss_pred eeeeeccCCCCCCC---------------CCCCCCCCCCceEEecCCCccccHHHHHHHHh-ccCceEEEEEeeeCCCCC
Q 019542 230 LLTVNKAAPRGTQP---------------ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFS-EHGKVVNARVVYDRETGR 293 (339)
Q Consensus 230 ~l~V~~a~~~~~~~---------------~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~-~~G~V~~v~i~~d~~~~~ 293 (339)
.+.+....+..... ....+...+.+|||||+||.-++.++|-.+|. -||.|+.+-|..|++-+-
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 22322222221111 01233456778999999999999999999998 699999999999988899
Q ss_pred cceEEEEEeCCHHHHHHHHHH
Q 019542 294 SRGFGFVTMSSETELNDAIAA 314 (339)
Q Consensus 294 ~kg~afV~F~~~e~A~~Al~~ 314 (339)
++|-|-|+|.+..+-.+||.+
T Consensus 412 PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcceeeecccHHHHHHHhh
Confidence 999999999999999999983
No 71
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.3e-13 Score=112.58 Aligned_cols=79 Identities=33% Similarity=0.575 Sum_probs=73.7
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
.++|||+||+..+++.+|..+|..||.+..|-|.+. +.|||||+|+++-+|..|+..|+|..|.|..|+|.++.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 468999999999999999999999999999988765 489999999999999999999999999999999999987
Q ss_pred cccC
Q 019542 333 RQRR 336 (339)
Q Consensus 333 ~~~~ 336 (339)
+++.
T Consensus 85 ~~r~ 88 (195)
T KOG0107|consen 85 RPRG 88 (195)
T ss_pred Cccc
Confidence 7764
No 72
>smart00362 RRM_2 RNA recognition motif.
Probab=99.48 E-value=3.1e-13 Score=96.28 Aligned_cols=72 Identities=40% Similarity=0.774 Sum_probs=67.8
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
+|+|+|||..++.++|+++|..||.|..+.+.+++ +.++|+|||+|.+.++|.+|+..++|..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 7889999999999999999999999999999999874
No 73
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.47 E-value=1.4e-13 Score=124.50 Aligned_cols=170 Identities=19% Similarity=0.297 Sum_probs=132.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcc----CCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKA----GTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~----G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.-.|.+++|||+++..++..||.+- |..+.|..++.++ |+..|-|||.|...++|+.||.. |...++.|.|.+.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 4578899999999999999999732 2345666666555 99999999999999999999998 8888888888775
Q ss_pred ccCCCC-----------------CC------CCCCCCCCCCCceEEecCCCccccHHHHHHHHhccC-ceEE--EEEeee
Q 019542 235 KAAPRG-----------------TQ------PERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG-KVVN--ARVVYD 288 (339)
Q Consensus 235 ~a~~~~-----------------~~------~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G-~V~~--v~i~~d 288 (339)
++.... .. +........+...|.+++||+..+.++|..+|..|. .|.. |.++.+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 442110 00 001111122245799999999999999999999885 3333 777777
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 289 RETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 289 ~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
..|++.|-|||+|.+.+.|..|....|++...+|.|.|--+.
T Consensus 319 -~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 319 -GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred -CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 569999999999999999999999999998899999987653
No 74
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=2.3e-12 Score=116.05 Aligned_cols=172 Identities=20% Similarity=0.359 Sum_probs=135.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
.-.+|||..+-.+.+++||+..|..||+|.+|.+.+.+..+..|||||++|.+..+...|+..+|=..++|..|+|-.+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999997665
Q ss_pred CCCCCC--------------------------------------------------------------------------
Q 019542 238 PRGTQP-------------------------------------------------------------------------- 243 (339)
Q Consensus 238 ~~~~~~-------------------------------------------------------------------------- 243 (339)
..+..-
T Consensus 289 TPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~v 368 (544)
T KOG0124|consen 289 TPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGV 368 (544)
T ss_pred CCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccC
Confidence 332000
Q ss_pred --CCC--CCC----------------------------------------------------------------CCCCce
Q 019542 244 --ERA--PRV----------------------------------------------------------------FEPGFR 255 (339)
Q Consensus 244 --~~~--~~~----------------------------------------------------------------~~~~~~ 255 (339)
.+. +.. ....+.
T Consensus 369 tP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~V 448 (544)
T KOG0124|consen 369 TPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTV 448 (544)
T ss_pred CCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcE
Confidence 000 000 000225
Q ss_pred EEecCC--CccccH---HHHHHHHhccCceEEEEEeeeCCCCCc----ceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 019542 256 IYVGNL--PWEVDN---ARLEQVFSEHGKVVNARVVYDRETGRS----RGFGFVTMSSETELNDAIAALDGQNLDGRAIR 326 (339)
Q Consensus 256 l~V~nL--p~~~te---e~L~~~F~~~G~V~~v~i~~d~~~~~~----kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~ 326 (339)
|.++|. |.++++ .+|++-|.+||.|..|.|.-.+.++.- ----||+|....++.+|..+|+|..++||++.
T Consensus 449 ivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~Vv 528 (544)
T KOG0124|consen 449 IVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVV 528 (544)
T ss_pred EEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceee
Confidence 777776 444543 679999999999999977654332211 12379999999999999999999999999987
Q ss_pred EEE
Q 019542 327 VNV 329 (339)
Q Consensus 327 V~~ 329 (339)
...
T Consensus 529 AE~ 531 (544)
T KOG0124|consen 529 AEV 531 (544)
T ss_pred hhh
Confidence 654
No 75
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=4.5e-13 Score=116.26 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=71.0
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
.+++|||+||++.+|+++|+++|+.||.|.+|+|+++ +..+|||||+|.+.++|..|+. |+|..|.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4579999999999999999999999999999999988 4556899999999999999996 99999999999999865
Q ss_pred c
Q 019542 332 D 332 (339)
Q Consensus 332 ~ 332 (339)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 4
No 76
>smart00360 RRM RNA recognition motif.
Probab=99.46 E-value=4.2e-13 Score=95.26 Aligned_cols=71 Identities=45% Similarity=0.847 Sum_probs=67.5
Q ss_pred ecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 258 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 258 V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
|+|||..++.++|+.+|..||.|..+.+..++.++.++|+|||+|.+.++|..|+..+++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988789999999999999999999999999999999999874
No 77
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.45 E-value=2.8e-12 Score=117.14 Aligned_cols=166 Identities=22% Similarity=0.333 Sum_probs=128.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccE-EEEEeccHHHHHHHHHHhCCcccC--Cceeeee
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGF-GFVTMSTVEEAEKAVEMFHRYDID--GRLLTVN 234 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~-afV~f~~~e~a~~Al~~~~~~~l~--gr~l~V~ 234 (339)
.--+++|+|+-+.++-+-|..+|++||.|..|. ++. +..|| |+|+|.+...|..|-..|+|..|. ...|+++
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi--TF~---Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId 223 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII--TFT---KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRID 223 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEE--EEe---cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEee
Confidence 335789999999999999999999999987654 332 23344 999999999999999999988774 3556665
Q ss_pred ccCC----------CCC---CCCCC----------------------------------------CCCCCC--CceEEec
Q 019542 235 KAAP----------RGT---QPERA----------------------------------------PRVFEP--GFRIYVG 259 (339)
Q Consensus 235 ~a~~----------~~~---~~~~~----------------------------------------~~~~~~--~~~l~V~ 259 (339)
++.. +.. .+... .....+ ...|-|.
T Consensus 224 ~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvs 303 (492)
T KOG1190|consen 224 FSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVS 303 (492)
T ss_pred hhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEe
Confidence 5432 110 00000 000111 2567788
Q ss_pred CCCcc-ccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccc
Q 019542 260 NLPWE-VDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 260 nLp~~-~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~ 333 (339)
||... +|.+-|..+|+-||.|.+|.|++++ +--|+|+|.+...|.-|+.+|+|+.+.|++|+|.+++..
T Consensus 304 nln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 304 NLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred cCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 88654 8999999999999999999999875 346999999999999999999999999999999998754
No 78
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.43 E-value=2.3e-13 Score=129.25 Aligned_cols=82 Identities=41% Similarity=0.795 Sum_probs=79.7
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccc
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~ 333 (339)
+.|||||+|+++++++|..+|+..|.|.+++++.|+.+|+++||||++|.+.++|.+|++.|||..++||+|+|.|+..+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cc
Q 019542 334 QR 335 (339)
Q Consensus 334 ~~ 335 (339)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 65
No 79
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=8.6e-13 Score=98.48 Aligned_cols=84 Identities=30% Similarity=0.532 Sum_probs=74.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
.++...+.|||+|||+++|.+++.++|+.||.|..|++-..+ ..+|-|||.|++..+|.+|+..|+|..+.++.|.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 345567899999999999999999999999999999996544 46899999999999999999999999999999999
Q ss_pred eccCCCC
Q 019542 234 NKAAPRG 240 (339)
Q Consensus 234 ~~a~~~~ 240 (339)
-+..+..
T Consensus 90 lyyq~~~ 96 (124)
T KOG0114|consen 90 LYYQPED 96 (124)
T ss_pred EecCHHH
Confidence 8876543
No 80
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=6.7e-13 Score=99.06 Aligned_cols=78 Identities=24% Similarity=0.430 Sum_probs=71.2
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
..-|||+|||+.+|.++..++|.+||.|..++|-..+. .+|.|||-|++..+|.+|+.+|+|..+.++.|.|-|-++
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 34799999999999999999999999999999975544 499999999999999999999999999999999998765
Q ss_pred c
Q 019542 333 R 333 (339)
Q Consensus 333 ~ 333 (339)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 3
No 81
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.42 E-value=2.9e-13 Score=111.12 Aligned_cols=83 Identities=37% Similarity=0.559 Sum_probs=78.5
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
..+|||+||+..++++.|+++|-..|+|..+++++|+.++..+|||||+|.+.++|.-|++.||...+-||+|+|..+..
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred ccc
Q 019542 333 RQR 335 (339)
Q Consensus 333 ~~~ 335 (339)
++.
T Consensus 89 ~~~ 91 (203)
T KOG0131|consen 89 HQK 91 (203)
T ss_pred ccc
Confidence 443
No 82
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=6.3e-13 Score=123.88 Aligned_cols=77 Identities=26% Similarity=0.439 Sum_probs=71.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccH--HHHHHHHHHhCCcccCCceeeeecc
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTV--EEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~--e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
..+||||||++++++++|+..|..||.|..|.|+ +.+| ||||||+|.+. .++.+|+..|||..+.||.|+|..|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 4689999999999999999999999999999999 4566 99999999987 7899999999999999999999988
Q ss_pred CCC
Q 019542 237 APR 239 (339)
Q Consensus 237 ~~~ 239 (339)
.+.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 643
No 83
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=2.2e-12 Score=92.31 Aligned_cols=74 Identities=42% Similarity=0.803 Sum_probs=69.1
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
+|+|+|||..+++++|+++|..+|.|..+.+..++.+ .++|+|||+|.+.++|..|+..+++..++|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987544 7799999999999999999999999999999999875
No 84
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.6e-12 Score=112.88 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
...+|||+||++.+|+++|++||+.||.|.+|+|+++ ++++|||||+|.+++++..|+. |+|..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4679999999999999999999999999999999987 4566899999999999999995 59999999999999876
Q ss_pred CCC
Q 019542 238 PRG 240 (339)
Q Consensus 238 ~~~ 240 (339)
...
T Consensus 80 ~y~ 82 (243)
T PLN03121 80 QYE 82 (243)
T ss_pred ccc
Confidence 543
No 85
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=1.1e-12 Score=116.69 Aligned_cols=83 Identities=36% Similarity=0.609 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..++|+|.||||...+-||+.+|.+||.|..|.|+.+.. -+||||||+|.+.++|++|-..|||.++.||+|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC--CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 457899999999999999999999999999999998876 479999999999999999999999999999999999998
Q ss_pred CCCCC
Q 019542 238 PRGTQ 242 (339)
Q Consensus 238 ~~~~~ 242 (339)
.+-..
T Consensus 173 arV~n 177 (376)
T KOG0125|consen 173 ARVHN 177 (376)
T ss_pred hhhcc
Confidence 77433
No 86
>smart00362 RRM_2 RNA recognition motif.
Probab=99.40 E-value=2.1e-12 Score=91.93 Aligned_cols=72 Identities=43% Similarity=0.699 Sum_probs=67.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 161 ~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
+|||+|||..++.++|+++|.+||.|..+.+.... +.++|+|||+|.+.+.|..|+..+++..+.|+.|+|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988766 7889999999999999999999999999999998873
No 87
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.1e-13 Score=114.95 Aligned_cols=81 Identities=33% Similarity=0.562 Sum_probs=78.4
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccc
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~ 333 (339)
++||||+|-..+++.-|...|-+||.|..|.++.|-++++.||||||+|...++|..|+..||+..|.||.|+|.+|+|-
T Consensus 11 rtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 11 RTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred eeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred c
Q 019542 334 Q 334 (339)
Q Consensus 334 ~ 334 (339)
+
T Consensus 91 k 91 (298)
T KOG0111|consen 91 K 91 (298)
T ss_pred c
Confidence 4
No 88
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=1.1e-12 Score=102.59 Aligned_cols=88 Identities=26% Similarity=0.435 Sum_probs=81.4
Q ss_pred CCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 019542 247 PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 326 (339)
Q Consensus 247 ~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~ 326 (339)
++....+-.|||.++...+++++|...|..||.|..+.+-.|+-||-.+|||+|+|.+..+|++|+..+||..|.|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 44455567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccc
Q 019542 327 VNVAEDRQ 334 (339)
Q Consensus 327 V~~a~~~~ 334 (339)
|.||--+.
T Consensus 146 VDw~Fv~g 153 (170)
T KOG0130|consen 146 VDWCFVKG 153 (170)
T ss_pred EEEEEecC
Confidence 99996443
No 89
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.39 E-value=1.9e-12 Score=116.68 Aligned_cols=79 Identities=44% Similarity=0.807 Sum_probs=76.6
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
.++|||+|||+.+++++|+.+|..||.|..+.+.+++.+|+++|||||+|.+.++|..|+..++|..|.|+.|+|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5799999999999999999999999999999999999899999999999999999999999999999999999999965
No 90
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.4e-12 Score=106.57 Aligned_cols=80 Identities=30% Similarity=0.418 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
+-.++||||||+..+++.+|...|..||++..|.|..+ +.|||||+|+++.+|..|+..|+|..|.|..|+|+.+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34689999999999999999999999999999999864 4799999999999999999999999999999999988
Q ss_pred CCCCC
Q 019542 237 APRGT 241 (339)
Q Consensus 237 ~~~~~ 241 (339)
.....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 76654
No 91
>smart00360 RRM RNA recognition motif.
Probab=99.37 E-value=3.6e-12 Score=90.34 Aligned_cols=71 Identities=44% Similarity=0.741 Sum_probs=67.3
Q ss_pred EcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 164 VGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 164 VgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
|+|||..++.++|+.+|.+||.|..+.+...+.++.++|+|||+|.+.++|..|+..+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999888889999999999999999999999999999999999874
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.36 E-value=1.4e-12 Score=118.46 Aligned_cols=178 Identities=22% Similarity=0.329 Sum_probs=149.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
...+.|+|++.+.+.+.+...++..+|......+.........+|++++.|...+.+..|+.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46799999999999999999999999988888888888889999999999999999999999855567777777666555
Q ss_pred CCCCCCCCC--CCCCCCCceEE-ecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 019542 238 PRGTQPERA--PRVFEPGFRIY-VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314 (339)
Q Consensus 238 ~~~~~~~~~--~~~~~~~~~l~-V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~ 314 (339)
......... .....+..++| |+||++.+++++|+..|..+|.|..++++-++.++.++|||||.|.+...+..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 554221111 11222333555 999999999999999999999999999999999999999999999999999999997
Q ss_pred hCCCeeCCeEEEEEEecccccC
Q 019542 315 LDGQNLDGRAIRVNVAEDRQRR 336 (339)
Q Consensus 315 l~g~~l~gr~l~V~~a~~~~~~ 336 (339)
....+.|+.+++.+..+++..
T Consensus 247 -~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred -ccCcccCcccccccCCCCccc
Confidence 888899999999999888654
No 93
>smart00361 RRM_1 RNA recognition motif.
Probab=99.36 E-value=3.9e-12 Score=91.45 Aligned_cols=62 Identities=26% Similarity=0.478 Sum_probs=56.5
Q ss_pred HHHHHHHHh----ccCceEEEE-EeeeCCC--CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 267 NARLEQVFS----EHGKVVNAR-VVYDRET--GRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 267 ee~L~~~F~----~~G~V~~v~-i~~d~~~--~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
+++|+++|+ +||.|..+. |+.++.+ +.++|||||+|.+.++|.+|+..|||..+.||.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999996 7777767 9999999999999999999999999999999999873
No 94
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.34 E-value=2.5e-12 Score=122.33 Aligned_cols=81 Identities=37% Similarity=0.688 Sum_probs=78.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCC
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 239 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~ 239 (339)
+.|||||+||++++++|..+|+..|.|..++++.++.+|+++||||++|.+.+++..|++.||+..+.||+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred C
Q 019542 240 G 240 (339)
Q Consensus 240 ~ 240 (339)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 95
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.33 E-value=2e-12 Score=108.15 Aligned_cols=81 Identities=35% Similarity=0.448 Sum_probs=77.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
-.+|.|-||.+-++.++|+..|.+||.|..|.|..+..|+.++|||||.|....+|+.|+..|+|.+|+|+.|+|+.|.-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred C
Q 019542 239 R 239 (339)
Q Consensus 239 ~ 239 (339)
.
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 3
No 96
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.33 E-value=7.9e-12 Score=85.71 Aligned_cols=56 Identities=34% Similarity=0.680 Sum_probs=50.9
Q ss_pred HHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 270 LEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 270 L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
|+++|++||.|..+.+.... +|+|||+|.+.++|.+|+..|||..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997552 689999999999999999999999999999999996
No 97
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=4.2e-12 Score=99.27 Aligned_cols=86 Identities=20% Similarity=0.349 Sum_probs=81.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
.....|||.++-..+++++|.+.|..||+|..+.+..+..||-.||||+|+|.+.+.|++|+..+|+..|.|+.|.|+++
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 019542 237 APRGTQ 242 (339)
Q Consensus 237 ~~~~~~ 242 (339)
..+++.
T Consensus 150 Fv~gp~ 155 (170)
T KOG0130|consen 150 FVKGPE 155 (170)
T ss_pred EecCCc
Confidence 776653
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.31 E-value=1.9e-11 Score=87.41 Aligned_cols=74 Identities=45% Similarity=0.722 Sum_probs=68.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 161 ~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
+|+|+|||..+++++|+++|+.+|.|..+.+...+.+ +++|+|||+|.+.++|..|+..+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999977764 7799999999999999999999999999999998863
No 99
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.30 E-value=6.1e-11 Score=107.32 Aligned_cols=171 Identities=16% Similarity=0.200 Sum_probs=135.0
Q ss_pred ccCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHh--CCcccCCc
Q 019542 152 EFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF--HRYDIDGR 229 (339)
Q Consensus 152 ~~~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~--~~~~l~gr 229 (339)
+..+++++..|.|++|-..+++.+|.+.++.||.|..+..+.. +..|.|+|++.+.|..|+... +...+.|+
T Consensus 24 dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq 97 (494)
T KOG1456|consen 24 DPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQ 97 (494)
T ss_pred CCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCc
Confidence 4456678889999999999999999999999999999887644 447999999999999998653 44567888
Q ss_pred eeeeeccCCCCCCCCCCCCCCCCCce--EEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHH
Q 019542 230 LLTVNKAAPRGTQPERAPRVFEPGFR--IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 307 (339)
Q Consensus 230 ~l~V~~a~~~~~~~~~~~~~~~~~~~--l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~ 307 (339)
.--+.++....-.... .....+... +.|-|--+.+|-+-|..++.+.|+|..|.|.+. + --.|+|+|.+.+.
T Consensus 98 ~Al~NyStsq~i~R~g-~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~ 171 (494)
T KOG1456|consen 98 QALFNYSTSQCIERPG-DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEV 171 (494)
T ss_pred hhhcccchhhhhccCC-CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHH
Confidence 8888887544322111 112222223 345676788999999999999999999988765 2 3359999999999
Q ss_pred HHHHHHHhCCCee--CCeEEEEEEecccc
Q 019542 308 LNDAIAALDGQNL--DGRAIRVNVAEDRQ 334 (339)
Q Consensus 308 A~~Al~~l~g~~l--~gr~l~V~~a~~~~ 334 (339)
|++|..+|||-.| +..+|+|.||++..
T Consensus 172 AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 172 AQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred HHHHHhhcccccccccceeEEEEecCcce
Confidence 9999999999987 56799999998754
No 100
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=5.8e-12 Score=120.51 Aligned_cols=170 Identities=24% Similarity=0.480 Sum_probs=141.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc-----------C-CeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcc
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKA-----------G-TVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYD 225 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~-----------G-~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~ 225 (339)
..+.++|+++|+.++++.+..+|..- | .+..+.+ ...++|||++|.+.+.|..|+.. ++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~------n~~~nfa~ie~~s~~~at~~~~~-~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL------NLEKNFAFIEFRSISEATEAMAL-DGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee------cccccceeEEecCCCchhhhhcc-cchh
Confidence 45679999999999999999999753 2 2334433 34577999999999999998886 8889
Q ss_pred cCCceeeeeccCCCCCCCCC---------------CCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCC
Q 019542 226 IDGRLLTVNKAAPRGTQPER---------------APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRE 290 (339)
Q Consensus 226 l~gr~l~V~~a~~~~~~~~~---------------~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~ 290 (339)
+.|+.+++.........+.. .......+..+||+|||..+++.+++++...||.+...+++.+..
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~ 326 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA 326 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc
Confidence 99999998766554433211 112233456899999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecccc
Q 019542 291 TGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334 (339)
Q Consensus 291 ~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~~ 334 (339)
+|.++||||.+|.+......|+..|||..+++..|.|+.|-...
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 99999999999999999999999999999999999999986544
No 101
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=8.1e-13 Score=111.45 Aligned_cols=142 Identities=27% Similarity=0.375 Sum_probs=125.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.++..+||||+|+...++++-|.++|-+.|+|..|.|...++ +..| ||||.|.+.-++.-|+.++||..+.++.+.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 345578999999999999999999999999999999987776 5556 99999999999999999999999999998876
Q ss_pred ccCCCCCCCCCCCCCCCCCceEEecC----CCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHH
Q 019542 235 KAAPRGTQPERAPRVFEPGFRIYVGN----LPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 310 (339)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~ 310 (339)
++.|+ |...++.+.+...|+..|.+..+++..+++ |+++.++|+.+....+.-.
T Consensus 83 ---------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~ 140 (267)
T KOG4454|consen 83 ---------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPF 140 (267)
T ss_pred ---------------------cccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcH
Confidence 44555 667789999999999999999999999964 9999999999999988889
Q ss_pred HHHHhCCCee
Q 019542 311 AIAALDGQNL 320 (339)
Q Consensus 311 Al~~l~g~~l 320 (339)
++....+..+
T Consensus 141 ~~~~y~~l~~ 150 (267)
T KOG4454|consen 141 ALDLYQGLEL 150 (267)
T ss_pred HhhhhcccCc
Confidence 9988777544
No 102
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.5e-12 Score=106.48 Aligned_cols=83 Identities=29% Similarity=0.518 Sum_probs=79.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..++||||+|.-++++.-|...|-+||.|..|.++.+..+++.+|||||+|...++|..|+..+|+..|.||.|+|.+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 019542 238 PRG 240 (339)
Q Consensus 238 ~~~ 240 (339)
+..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 764
No 103
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.23 E-value=9.1e-11 Score=109.92 Aligned_cols=168 Identities=21% Similarity=0.320 Sum_probs=129.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
...+|.+++|||.||+++|.+||..+-.+....+......+++.|-|||+|++.+.|++|+.. |...|..|.|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 457999999999999999999999987666633334444588999999999999999999998 8888999999987553
Q ss_pred CCC------------C-----------CC----------CC---C--------------C--CC----------------
Q 019542 238 PRG------------T-----------QP----------ER---A--------------P--RV---------------- 249 (339)
Q Consensus 238 ~~~------------~-----------~~----------~~---~--------------~--~~---------------- 249 (339)
... . +. .. . + ..
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 110 0 00 00 0 0 00
Q ss_pred -----------------CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHH
Q 019542 250 -----------------FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312 (339)
Q Consensus 250 -----------------~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al 312 (339)
...+..+..++||+..+..++.++|+..-.+ .|.|-.. .+|+..|-|+|+|.+.++|..|+
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhh
Confidence 0011367889999999999999999987555 6666666 57999999999999999999999
Q ss_pred HHhCCCeeCCeEEEEEE
Q 019542 313 AALDGQNLDGRAIRVNV 329 (339)
Q Consensus 313 ~~l~g~~l~gr~l~V~~ 329 (339)
. -++..+..|.|....
T Consensus 339 s-kd~anm~hrYVElFl 354 (510)
T KOG4211|consen 339 G-KDGANMGHRYVELFL 354 (510)
T ss_pred c-cCCcccCcceeeecc
Confidence 8 477788888776544
No 104
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2e-11 Score=109.78 Aligned_cols=84 Identities=27% Similarity=0.442 Sum_probs=79.4
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
.+|.+.|||..|.+-++.++|.-+|+.||.|.+|.|++|..||-+-.||||+|.+.+++.+|.-.|++..|+.|+|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 019542 330 AEDR 333 (339)
Q Consensus 330 a~~~ 333 (339)
++.=
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8643
No 105
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=2.2e-12 Score=127.42 Aligned_cols=148 Identities=24% Similarity=0.364 Sum_probs=132.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
..++||.||+..+.+.+|...|..+|.+..+++..+...++.+|+||+.|..++++.+|+....+.. .|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~-~g---------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCF-FG---------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhh-hh----------
Confidence 3579999999999999999999999999888888777889999999999999999999999854433 33
Q ss_pred CCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 019542 239 RGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ 318 (339)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~ 318 (339)
...|+|+|+|+..|.+.|+.+|..+|.+.+++++.. ..|+++|.|+|.|.+..++.+++...++.
T Consensus 736 --------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~ 800 (881)
T KOG0128|consen 736 --------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVA 800 (881)
T ss_pred --------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhh
Confidence 116999999999999999999999999999998776 45999999999999999999999999999
Q ss_pred eeCCeEEEEEEecc
Q 019542 319 NLDGRAIRVNVAED 332 (339)
Q Consensus 319 ~l~gr~l~V~~a~~ 332 (339)
.+..+.+.|+.+.+
T Consensus 801 ~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 801 GKRENNGEVQVSNP 814 (881)
T ss_pred hhhhcCccccccCC
Confidence 99888888888654
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=99.15 E-value=1.7e-10 Score=82.92 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=55.7
Q ss_pred HHHHHHHHh----ccCCeeEEE-EEecCCC--CCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 173 SEKLAMLFE----KAGTVEIAE-VIYNRET--DRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 173 ~e~L~~~F~----~~G~i~~v~-~~~~~~~--g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
+++|+++|+ .||.|.++. ++.++.+ ++++|||||.|.+.++|.+|+..|||..+.||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999996 7777666 899999999999999999999999999999999986
No 107
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=9.2e-11 Score=96.68 Aligned_cols=78 Identities=29% Similarity=0.515 Sum_probs=70.1
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
.++|||+|||.++-+.+|..+|-+||.|..|.+... ..+..||||+|++.-+|..|+..-+|-.++|.+|+|.|+..
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 458999999999999999999999999999988532 34567999999999999999999999999999999999864
Q ss_pred c
Q 019542 333 R 333 (339)
Q Consensus 333 ~ 333 (339)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 3
No 108
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.13 E-value=2e-10 Score=96.54 Aligned_cols=85 Identities=25% Similarity=0.392 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcc-CCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKA-GTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~-G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
.......++|+.+|+.+.+..+..+|.++ |.+.++++.+++.||.+||||||+|.+.+.|.-|...||++.|.|+.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456789999999999999999999998 78888999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 019542 234 NKAAPR 239 (339)
Q Consensus 234 ~~a~~~ 239 (339)
.+..+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 987665
No 109
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.11 E-value=3.1e-10 Score=77.70 Aligned_cols=56 Identities=39% Similarity=0.643 Sum_probs=50.3
Q ss_pred HHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 176 LAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 176 L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
|+++|++||.|..+.+.... +++|||+|.+.++|..|+..+|+..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999987543 689999999999999999999999999999999875
No 110
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.10 E-value=1.3e-10 Score=102.14 Aligned_cols=74 Identities=32% Similarity=0.668 Sum_probs=70.1
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecccc
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 334 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~~ 334 (339)
+|||||||..+++.+|+.+|++||+|..|.|+++ ||||..++...|..|++.|||-.|+|..|.|.-++.+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 7999999999999999999999999999999854 99999999999999999999999999999999999885
Q ss_pred cC
Q 019542 335 RR 336 (339)
Q Consensus 335 ~~ 336 (339)
+.
T Consensus 76 k~ 77 (346)
T KOG0109|consen 76 KA 77 (346)
T ss_pred CC
Confidence 54
No 111
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.10 E-value=6.9e-11 Score=102.05 Aligned_cols=172 Identities=22% Similarity=0.371 Sum_probs=131.6
Q ss_pred CCCCeEEEcCCCCCCCHHH-H--HHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 157 PEDAKLFVGNLPYDVDSEK-L--AMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~-L--~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
+.-...|++|+-..+..+- | ...|+.+-......++.... +.-++++|+.|.......++-..-++..+.-+.++.
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 4445677888777776555 3 55666665555555554433 677899999999888888877766777776666555
Q ss_pred eccCCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 019542 234 NKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313 (339)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~ 313 (339)
..+..-.. .........-.+||.|.|...++.+-|-..|.+|-.....++++++-||+++||+||.|.+..++..|++
T Consensus 173 a~gtswed--Psl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmr 250 (290)
T KOG0226|consen 173 AAGTSWED--PSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMR 250 (290)
T ss_pred ccccccCC--cccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHH
Confidence 54433221 1122334445699999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeeCCeEEEEEEec
Q 019542 314 ALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 314 ~l~g~~l~gr~l~V~~a~ 331 (339)
.|+|..++.|.|.++-+.
T Consensus 251 em~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 251 EMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred hhcccccccchhHhhhhh
Confidence 999999999988876543
No 112
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5e-11 Score=107.18 Aligned_cols=87 Identities=26% Similarity=0.369 Sum_probs=81.2
Q ss_pred ccCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCcee
Q 019542 152 EFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLL 231 (339)
Q Consensus 152 ~~~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l 231 (339)
.....|+...|||..|.+-++.++|.-+|+.||.|..|.++++..||.+--||||+|.+.+++++|.-.|++..|..|.|
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCC
Q 019542 232 TVNKAAP 238 (339)
Q Consensus 232 ~V~~a~~ 238 (339)
.|+++..
T Consensus 312 HVDFSQS 318 (479)
T KOG0415|consen 312 HVDFSQS 318 (479)
T ss_pred Eeehhhh
Confidence 9987643
No 113
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.08 E-value=5.5e-10 Score=101.53 Aligned_cols=167 Identities=19% Similarity=0.261 Sum_probs=125.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
....|..++|||..+..+|..||.......-.+.+.....|+..|.|.|.|.+.+.-..|++. +.+.+.+|.|.|..+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccC
Confidence 455788899999999999999998775443334444444588899999999999999999998 9999999999998876
Q ss_pred CCCCCC--------CCCCCCCCCCceEEecCCCccccHHHHHHHHhcc----CceEEEEEeeeCCCCCcceEEEEEeCCH
Q 019542 238 PRGTQP--------ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEH----GKVVNARVVYDRETGRSRGFGFVTMSSE 305 (339)
Q Consensus 238 ~~~~~~--------~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~----G~V~~v~i~~d~~~~~~kg~afV~F~~~ 305 (339)
...--. ....-.....-.|.+++||+++++.++..+|.+. |.++.+-++.. .+|+..|-|||.|...
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACE 216 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCH
Confidence 543110 0010111223368889999999999999999743 35556655555 4699999999999999
Q ss_pred HHHHHHHHHhCCCeeCCeEEEE
Q 019542 306 TELNDAIAALDGQNLDGRAIRV 327 (339)
Q Consensus 306 e~A~~Al~~l~g~~l~gr~l~V 327 (339)
++|..||.. |...|+-|.|.+
T Consensus 217 e~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 217 EDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred HHHHHHHHH-HHHHHhHHHHHH
Confidence 999999994 665666555543
No 114
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.03 E-value=1.9e-08 Score=91.38 Aligned_cols=162 Identities=22% Similarity=0.291 Sum_probs=129.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCccc--CCceeeeeccCCC
Q 019542 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI--DGRLLTVNKAAPR 239 (339)
Q Consensus 162 vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l--~gr~l~V~~a~~~ 239 (339)
+-|-|--+.+|-+-|..+...+|.|.+|-|.+. +| --|.|+|.+.+.|++|-..|||..| +...|+|++|.+.
T Consensus 125 ~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 125 FTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred EEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 445676788999999999999999998877643 33 3599999999999999999999887 4678888888653
Q ss_pred CCC---------------------CCCC----------------------------------------------------
Q 019542 240 GTQ---------------------PERA---------------------------------------------------- 246 (339)
Q Consensus 240 ~~~---------------------~~~~---------------------------------------------------- 246 (339)
.-. +.++
T Consensus 200 rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a 279 (494)
T KOG1456|consen 200 RLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYA 279 (494)
T ss_pred eeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCC
Confidence 200 0000
Q ss_pred -CCCCCCCceEEecCCCcc-ccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 019542 247 -PRVFEPGFRIYVGNLPWE-VDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA 324 (339)
Q Consensus 247 -~~~~~~~~~l~V~nLp~~-~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~ 324 (339)
+....+++.+.|-+|... +.-+.|.++|=.||.|..|.+++-+ .|.|+|++.+..+.++|+..|||..+.|.+
T Consensus 280 ~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 280 SPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred CCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccce
Confidence 000123457888899866 5668899999999999999998764 578999999999999999999999999999
Q ss_pred EEEEEeccc
Q 019542 325 IRVNVAEDR 333 (339)
Q Consensus 325 l~V~~a~~~ 333 (339)
|.|-+++..
T Consensus 355 l~v~~SkQ~ 363 (494)
T KOG1456|consen 355 LNVCVSKQN 363 (494)
T ss_pred EEEeecccc
Confidence 999998764
No 115
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=1.9e-10 Score=114.48 Aligned_cols=160 Identities=19% Similarity=0.274 Sum_probs=134.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
...+|||+|||+..+++.+|+..|..+|.|..|.|.+-.. ++..-||||.|.+...+-.|+..+.+..|..-.+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 3567999999999999999999999999999999875543 666779999999999999999888887776555555544
Q ss_pred CCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 019542 237 APRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD 316 (339)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~ 316 (339)
.. ...+.+.+++++|+..+....|...|..||.|..|.+... .-||||.|.+...|..|+..|.
T Consensus 449 ~~----------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~r 512 (975)
T KOG0112|consen 449 QP----------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMR 512 (975)
T ss_pred cc----------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHh
Confidence 33 1223458999999999999999999999999999887432 5599999999999999999999
Q ss_pred CCeeCC--eEEEEEEeccc
Q 019542 317 GQNLDG--RAIRVNVAEDR 333 (339)
Q Consensus 317 g~~l~g--r~l~V~~a~~~ 333 (339)
|..|+| +.|+|.|+.+-
T Consensus 513 gap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 513 GAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred cCcCCCCCcccccccccCC
Confidence 999975 78999998754
No 116
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.02 E-value=1e-09 Score=93.68 Aligned_cols=77 Identities=26% Similarity=0.518 Sum_probs=71.9
Q ss_pred eEEecCCCccccHHHHHH----HHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 255 RIYVGNLPWEVDNARLEQ----VFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~----~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
||||.||+..+..++|+. +|+.||.|..|... .+.+.+|-|||.|++.+.|-.|+++|+|..+.|+.++|+||
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 999999999999999888 99999999999876 45778999999999999999999999999999999999999
Q ss_pred cccc
Q 019542 331 EDRQ 334 (339)
Q Consensus 331 ~~~~ 334 (339)
+.+.
T Consensus 88 ~s~s 91 (221)
T KOG4206|consen 88 KSDS 91 (221)
T ss_pred cCcc
Confidence 8764
No 117
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.00 E-value=8.3e-10 Score=100.92 Aligned_cols=205 Identities=21% Similarity=0.251 Sum_probs=141.1
Q ss_pred ecccccccceeeeccccccccccccccccccccccccccccCCCCCCccCCCCccccCCCCCCCCCCCCccccccccccc
Q 019542 61 LKKTTHFSSFTTFVAQTSDWADQEEDKDNTTITLEQEQEENGEEEPNWENQGADETEGNLSDWGEPEGEDTVVEAGERQE 140 (339)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~eee~e~e~~ee~~~e~~~~de~e~~~~~~~e~~~~~~~~~~~~~~~ 140 (339)
...+|.++.|++.........+.....+++.++.+.+-..++..
T Consensus 46 rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~------------------------------------ 89 (311)
T KOG4205|consen 46 RSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQT------------------------------------ 89 (311)
T ss_pred CcccccceecCCCcchheeecccccccCCccccceeccCccccc------------------------------------
Confidence 45688999998777777777777777777666555432211111
Q ss_pred ccccCCcccccccCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHH
Q 019542 141 ESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220 (339)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~ 220 (339)
.........+||||.||.++++++++++|.++|.|..+.++.+..+.+.+||+||.|.+.+++.+++..
T Consensus 90 -----------~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~ 158 (311)
T KOG4205|consen 90 -----------KVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ 158 (311)
T ss_pred -----------ccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc
Confidence 111112467899999999999999999999999999999999999999999999999999999999887
Q ss_pred hCCcccCCceeeeeccCCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEe------eeCCCCCc
Q 019542 221 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVV------YDRETGRS 294 (339)
Q Consensus 221 ~~~~~l~gr~l~V~~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~------~d~~~~~~ 294 (339)
.-+.|+|+.+.|..|.++............ .....|++...+.-.|..+|.-|+.+.....- +... ..+
T Consensus 159 -~f~~~~gk~vevkrA~pk~~~~~~~~~~~~---~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~ 233 (311)
T KOG4205|consen 159 -KFHDFNGKKVEVKRAIPKEVMQSTKSSVST---RGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGP-LFN 233 (311)
T ss_pred -ceeeecCceeeEeeccchhhcccccccccc---ccccccccccccccccchhccccCcccccccccccccccccc-ccC
Confidence 888999999999999988765543321111 11122444444444555666666655311000 1111 135
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCC
Q 019542 295 RGFGFVTMSSETELNDAIAALDG 317 (339)
Q Consensus 295 kg~afV~F~~~e~A~~Al~~l~g 317 (339)
.|++|..|.+.....-+...+++
T Consensus 234 ~g~g~~~~~~~~~~~~~~~~~~~ 256 (311)
T KOG4205|consen 234 GGSGYPEFGNSGLGFGYGNKLNR 256 (311)
T ss_pred CCccccccCccccccccccccCC
Confidence 78889999876666655554554
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.98 E-value=1.1e-09 Score=107.50 Aligned_cols=79 Identities=22% Similarity=0.452 Sum_probs=72.7
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
.+|||||+|+..+++.+|.++|+.||.|.+|.+.- ++|+|||++.++.+|.+|+.+|++..+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 46999999999999999999999999999998853 489999999999999999999999999999999999987
Q ss_pred cccCC
Q 019542 333 RQRRS 337 (339)
Q Consensus 333 ~~~~s 337 (339)
+.-++
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 65544
No 119
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.93 E-value=3.2e-09 Score=89.35 Aligned_cols=81 Identities=22% Similarity=0.355 Sum_probs=74.9
Q ss_pred CceEEecCCCccccHHHHHHHHhcc-CceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEH-GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~-G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
...++|+.+|.-+-+.++..+|..+ |.|..+++-|++.||.++|||||+|.+.+.|.-|-..|||--|.|+.|.|.+-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3479999999999999999999998 788888888999999999999999999999999999999999999999999876
Q ss_pred cc
Q 019542 332 DR 333 (339)
Q Consensus 332 ~~ 333 (339)
+-
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 54
No 120
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=2.1e-09 Score=93.52 Aligned_cols=88 Identities=28% Similarity=0.512 Sum_probs=82.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
.+-++.+.|||-.||.+....+|...|-.||.|.+.++..++.|+.+|.||||.|.++.+++.|+..+||..|+-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 019542 234 NKAAPRGT 241 (339)
Q Consensus 234 ~~a~~~~~ 241 (339)
....++..
T Consensus 360 QLKRPkda 367 (371)
T KOG0146|consen 360 QLKRPKDA 367 (371)
T ss_pred hhcCcccc
Confidence 98776654
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=4.2e-09 Score=94.88 Aligned_cols=73 Identities=19% Similarity=0.360 Sum_probs=66.2
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCeEEEEEEecc
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL-DGQNLDGRAIRVNVAED 332 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l-~g~~l~gr~l~V~~a~~ 332 (339)
.+|||+||...+++.+|+++|-+||.|+.+++... +|+|||+|.++++|..|.... +...|+|++|.|.|..+
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 48999999999999999999999999999999755 679999999999999888766 54568999999999988
No 122
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.86 E-value=5.9e-09 Score=102.53 Aligned_cols=110 Identities=26% Similarity=0.464 Sum_probs=88.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
-++|||||.|+..+++.+|.++|+.||.|.+|.++ .++|+|||.+....+|.+|+..|+++.+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 46799999999999999999999999999999987 358899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhc
Q 019542 238 PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 276 (339)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~ 276 (339)
.++....-.. ... ..+=|.-|||.--..+|+.++..
T Consensus 494 g~G~kse~k~-~wD--~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 494 GKGPKSEYKD-YWD--VELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred cCCcchhhhh-hhh--cccCeeEeehHhcCHHHHHhhhh
Confidence 8876541110 000 12345667887544557777753
No 123
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.75 E-value=3.5e-08 Score=94.03 Aligned_cols=85 Identities=36% Similarity=0.535 Sum_probs=79.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
..-.+.|||.+|+..+...+|+++|++||.|+-.+++++..+.-.+.|+||+|.+.++|.+||..||...|.||.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 44577899999999999999999999999999999999999888889999999999999999999999999999999998
Q ss_pred cCCCC
Q 019542 236 AAPRG 240 (339)
Q Consensus 236 a~~~~ 240 (339)
+.+..
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 87654
No 124
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.70 E-value=5.5e-08 Score=85.70 Aligned_cols=79 Identities=30% Similarity=0.575 Sum_probs=73.5
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccc
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~ 333 (339)
++|+|.|||+.+++++|+++|..||.+..+-+-++ ..|++.|.|-|.|...++|.+|++.++|..++|+.+++.+....
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 58999999999999999999999999999988888 57999999999999999999999999999999999999887543
No 125
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.70 E-value=4.1e-08 Score=93.53 Aligned_cols=82 Identities=35% Similarity=0.551 Sum_probs=75.1
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
+..|+|.+|...+-..+|+++|++||+|....|+.+.-+--.+.|+||++.+.++|.+||..||...|.||.|.|.-++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 45799999999999999999999999999999998765555688999999999999999999999999999999999876
Q ss_pred cc
Q 019542 333 RQ 334 (339)
Q Consensus 333 ~~ 334 (339)
-+
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 54
No 126
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.69 E-value=9.1e-08 Score=81.46 Aligned_cols=84 Identities=20% Similarity=0.352 Sum_probs=71.1
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC---CeEEEEE
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDR-ETGRSRGFGFVTMSSETELNDAIAALDGQNLD---GRAIRVN 328 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~-~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~---gr~l~V~ 328 (339)
-+||||.+||.++..-+|+.+|..|-..+.+.|.+-. .....+-+|||+|.+...|..|+.+|||..++ +..|++.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 3599999999999999999999999887877665432 22234579999999999999999999999995 8899999
Q ss_pred EecccccC
Q 019542 329 VAEDRQRR 336 (339)
Q Consensus 329 ~a~~~~~~ 336 (339)
+|+.+.+.
T Consensus 114 lAKSNtK~ 121 (284)
T KOG1457|consen 114 LAKSNTKR 121 (284)
T ss_pred ehhcCccc
Confidence 99877653
No 127
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.68 E-value=1.9e-07 Score=70.78 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=71.5
Q ss_pred ceEEecCCCccccHHHHHHHHhcc--CceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC----CeEEEE
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEH--GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD----GRAIRV 327 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~--G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~----gr~l~V 327 (339)
+||-|+|||...+.++|.+++... |..-.+.++.|..++.+.|||||.|.+++.|.+....++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999999764 77788899999889999999999999999999999999999874 567788
Q ss_pred EEecccc
Q 019542 328 NVAEDRQ 334 (339)
Q Consensus 328 ~~a~~~~ 334 (339)
.||+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8886443
No 128
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.62 E-value=8.8e-08 Score=93.30 Aligned_cols=170 Identities=16% Similarity=0.080 Sum_probs=131.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..+.+-+.++++++...++++||... .|..+.|..+.-.+...|-++|.|.....+++|+.. |...+-.|.+.+-.+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCC
Confidence 45678888999999999999999765 355566655555455589999999999999999988 7777888888886554
Q ss_pred CCCCC--------CC-----------------------CCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEE-EEE
Q 019542 238 PRGTQ--------PE-----------------------RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVN-ARV 285 (339)
Q Consensus 238 ~~~~~--------~~-----------------------~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~-v~i 285 (339)
...-. .. ..+.....+..|||..||..+++..+..+|...-.|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 32200 00 00011223568999999999999999999999888887 666
Q ss_pred eeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 286 VYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 286 ~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
-+. -+++-++-|||.|.+.+++.+|+..-+.+.++.|.|+|.-.
T Consensus 468 t~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 468 TRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccC-CcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 555 46888999999999999999999877777888899998743
No 129
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.62 E-value=9.9e-08 Score=86.19 Aligned_cols=75 Identities=29% Similarity=0.456 Sum_probs=67.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHH-hCCcccCCceeeeecc
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM-FHRYDIDGRLLTVNKA 236 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~-~~~~~l~gr~l~V~~a 236 (339)
...+||||+|-..+++.+|+++|-+||.|..+++... ++.|||+|.+..+|+.|... ++...++|++|.|.|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 4568999999999999999999999999999998754 45899999999999998866 5777889999999999
Q ss_pred CC
Q 019542 237 AP 238 (339)
Q Consensus 237 ~~ 238 (339)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 88
No 130
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.61 E-value=1.3e-08 Score=93.00 Aligned_cols=170 Identities=14% Similarity=0.119 Sum_probs=127.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCC---CcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETD---RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g---~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
..|.|.||.+.++.++++.+|+-+|.|..++|+.+.... .....|||.|.+...+..|..+ -+.+|-++.|-|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL-tntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL-TNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh-ccceeeeeeEEEEec
Confidence 489999999999999999999999999999998754432 3355799999999999877665 677777777777544
Q ss_pred CCCCCCC------------------------CCCCC----------CCCC--------------CceEEecCCCccccHH
Q 019542 237 APRGTQP------------------------ERAPR----------VFEP--------------GFRIYVGNLPWEVDNA 268 (339)
Q Consensus 237 ~~~~~~~------------------------~~~~~----------~~~~--------------~~~l~V~nLp~~~tee 268 (339)
....... ...+. ...| ..+++|++|+..|...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 3221000 00000 0000 1379999999999999
Q ss_pred HHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccccc
Q 019542 269 RLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 335 (339)
Q Consensus 269 ~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~~~ 335 (339)
++...|..+|.|.+.++. .|...-+|.|.|....+...|+. ++|..+.-...++.+-+++.+
T Consensus 167 e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~kK 228 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPHKK 228 (479)
T ss_pred hhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCcccc
Confidence 999999999999998874 34446688999999999999999 788877766666666665554
No 131
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.61 E-value=5.5e-08 Score=85.81 Aligned_cols=85 Identities=22% Similarity=0.394 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
........+||||+.+.++.+++..+|..||.|..+.+..+..+|.++|||||+|.+.+.+..|+. +++..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 344566799999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred eccCCC
Q 019542 234 NKAAPR 239 (339)
Q Consensus 234 ~~a~~~ 239 (339)
.+...+
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 877655
No 132
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.58 E-value=9e-08 Score=84.47 Aligned_cols=79 Identities=29% Similarity=0.498 Sum_probs=75.3
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccc
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~ 333 (339)
..+||+|+.+.++.+++...|+.+|.|..+.|+.++..|.++|||||+|.+.+.+..|+. |+|..|.|+.|.|.+.+-+
T Consensus 102 ~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 102 PSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred ceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeeee
Confidence 489999999999999999999999999999999999999999999999999999999999 9999999999999987654
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.58 E-value=2.3e-07 Score=81.85 Aligned_cols=82 Identities=30% Similarity=0.494 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
-..+|+|.|||+.++.++|+++|..||.+..+.+-+++. |++.|.|-|.|...++|.+|++.+++..++|+.+++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 346899999999999999999999999888888777765 9999999999999999999999999999999999998776
Q ss_pred CCC
Q 019542 238 PRG 240 (339)
Q Consensus 238 ~~~ 240 (339)
...
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 554
No 134
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.58 E-value=1.9e-07 Score=88.69 Aligned_cols=81 Identities=26% Similarity=0.485 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
...+|||+|||++++...|+++|..||.|....|......++...||||+|.+.+.++.|+.. +...++|++|.|..-.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345699999999999999999999999999988876554455558999999999999999999 7889999999998665
Q ss_pred CC
Q 019542 238 PR 239 (339)
Q Consensus 238 ~~ 239 (339)
..
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 54
No 135
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.55 E-value=2.4e-07 Score=83.73 Aligned_cols=79 Identities=24% Similarity=0.438 Sum_probs=71.9
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceE--------EEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVV--------NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA 324 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~--------~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~ 324 (339)
.+.|||.|||.++|.+++.++|+++|-|. .|.|.++ +.|..+|-|++.|.-.+++.-|+..|++..+.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 45799999999999999999999999775 4677777 45999999999999999999999999999999999
Q ss_pred EEEEEecc
Q 019542 325 IRVNVAED 332 (339)
Q Consensus 325 l~V~~a~~ 332 (339)
|+|+.|+=
T Consensus 213 ~rVerAkf 220 (382)
T KOG1548|consen 213 LRVERAKF 220 (382)
T ss_pred EEEehhhh
Confidence 99999863
No 136
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.55 E-value=3.3e-07 Score=89.38 Aligned_cols=75 Identities=21% Similarity=0.365 Sum_probs=66.8
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
.|-+.|.|++++-+||.++|..|-.+-.-.+++..+.|.+.|-|.|.|++.++|..|...|+++.|..|+|.+.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 688999999999999999999997665444455558899999999999999999999999999999999999875
No 137
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.54 E-value=2e-07 Score=88.61 Aligned_cols=81 Identities=28% Similarity=0.507 Sum_probs=70.0
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
..+|||+|||++++..+|+++|..||.|+..+|....-.++..+||||+|.+.+++..|+.+ +-..++||+|.|.-.+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 34699999999999999999999999999999887653455559999999999999999995 67889999999987665
Q ss_pred cc
Q 019542 333 RQ 334 (339)
Q Consensus 333 ~~ 334 (339)
+.
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 43
No 138
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.53 E-value=1.3e-07 Score=82.01 Aligned_cols=84 Identities=25% Similarity=0.462 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
+....+||.|.|..+++.+-|...|.+|-.-...+++++..||+++||+||.|.+..++..|+..++|..++.|.|.+..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 44568999999999999999999999999989999999999999999999999999999999999999999999998876
Q ss_pred cCCC
Q 019542 236 AAPR 239 (339)
Q Consensus 236 a~~~ 239 (339)
..-+
T Consensus 267 S~wk 270 (290)
T KOG0226|consen 267 SEWK 270 (290)
T ss_pred hhHH
Confidence 5443
No 139
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.46 E-value=1.7e-07 Score=81.35 Aligned_cols=73 Identities=16% Similarity=0.302 Sum_probs=64.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCC--------CCcccE----EEEEeccHHHHHHHHHHhCCcc
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRET--------DRSRGF----GFVTMSTVEEAEKAVEMFHRYD 225 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~--------g~~kg~----afV~f~~~e~a~~Al~~~~~~~ 225 (339)
....||++|||+.+...-|+++|+.||.|-+|.+....++ |.++++ |||+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5679999999999999999999999999999999877665 333322 9999999999999999999999
Q ss_pred cCCce
Q 019542 226 IDGRL 230 (339)
Q Consensus 226 l~gr~ 230 (339)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99876
No 140
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.44 E-value=2.1e-08 Score=92.47 Aligned_cols=151 Identities=24% Similarity=0.406 Sum_probs=121.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCc-ccCCceeeeeccCCC
Q 019542 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRY-DIDGRLLTVNKAAPR 239 (339)
Q Consensus 161 ~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~-~l~gr~l~V~~a~~~ 239 (339)
.+|+|||...++..+|...|+....-..-.++ ...||+||.+.+...+.+|++.+++. .+.|.++.|.+..++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 68999999999999999999865211111111 23689999999999999999998875 479999999998877
Q ss_pred CCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 019542 240 GTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 319 (339)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~ 319 (339)
..+.. .+-|+|+|.....+-|-.+...||.|+.|..+.- ..-.-..-|+|.+.+.+..|+..|+|..
T Consensus 77 kqrsr----------k~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~Q 143 (584)
T KOG2193|consen 77 KQRSR----------KIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGPQ 143 (584)
T ss_pred HHHhh----------hhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 65432 5889999999999999999999999999866421 1112223489999999999999999999
Q ss_pred eCCeEEEEEEe
Q 019542 320 LDGRAIRVNVA 330 (339)
Q Consensus 320 l~gr~l~V~~a 330 (339)
+....++|.|-
T Consensus 144 ~en~~~k~~Yi 154 (584)
T KOG2193|consen 144 LENQHLKVGYI 154 (584)
T ss_pred hhhhhhhcccC
Confidence 99999988884
No 141
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.39 E-value=4.9e-07 Score=88.43 Aligned_cols=81 Identities=25% Similarity=0.443 Sum_probs=73.7
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeC---CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDR---ETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~---~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
..+.|||+||++.++++.|...|..||+|..++|+..+ +..+.+.+|||.|.+..+|.+|++.|+|..+.++.+++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 35689999999999999999999999999999998775 346678899999999999999999999999999999999
Q ss_pred Eecc
Q 019542 329 VAED 332 (339)
Q Consensus 329 ~a~~ 332 (339)
|++.
T Consensus 253 Wgk~ 256 (877)
T KOG0151|consen 253 WGKA 256 (877)
T ss_pred cccc
Confidence 9853
No 142
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.39 E-value=3e-07 Score=79.36 Aligned_cols=71 Identities=34% Similarity=0.689 Sum_probs=66.4
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccc
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~ 333 (339)
.+||++||+.+.+.+|..+|..||.+..+.+. .||+||.|.+..+|..|+..|||..|.|-.+.|.|+...
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 69999999999999999999999999999874 579999999999999999999999999988999999854
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.38 E-value=3.3e-06 Score=64.00 Aligned_cols=80 Identities=14% Similarity=0.277 Sum_probs=67.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcc--CCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccC----Cceeee
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKA--GTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDID----GRLLTV 233 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~--G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~----gr~l~V 233 (339)
.||.|+|+|...+.++|.+++... |...-+.++.+..++.+.|||||.|.+++.|.+....++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988643 56667788889899999999999999999999999999998774 455666
Q ss_pred eccCCC
Q 019542 234 NKAAPR 239 (339)
Q Consensus 234 ~~a~~~ 239 (339)
.+|.-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 666433
No 144
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=5.1e-07 Score=86.35 Aligned_cols=71 Identities=27% Similarity=0.396 Sum_probs=64.4
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 326 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~ 326 (339)
-+..+|+|-|||..+++++|+.+|+.||.|..|+.-+ ..+|++||+|-+.-+|++|+++|++..|.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3456999999999999999999999999999976543 3589999999999999999999999999999888
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=1.1e-06 Score=84.10 Aligned_cols=163 Identities=21% Similarity=0.217 Sum_probs=110.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
....++|+|-|||..++.++|+.+|+.||+|..|+.-. ..+|.+||+|-+..+|++|++.|++..+.|+.|....
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 34678999999999999999999999999998876643 3478999999999999999999999999999988322
Q ss_pred cCCCCCCCCCC--------------CCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEE
Q 019542 236 AAPRGTQPERA--------------PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVT 301 (339)
Q Consensus 236 a~~~~~~~~~~--------------~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~ 301 (339)
........... +...-+...+|+ .|++..+..-++.++.-+|.+.. +. ++.-...-|+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~~~ 219 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRFVE 219 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-cc-----ccchhhhhhhh
Confidence 22111110000 000001123333 38888888777788888887766 32 22222256788
Q ss_pred eCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 302 MSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 302 F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
|.+..++..++..+ |..+.+..-.+.++.
T Consensus 220 ~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~ 248 (549)
T KOG4660|consen 220 FADNRSYAFSEPRG-GFLISNSSGVITFSG 248 (549)
T ss_pred hccccchhhcccCC-ceecCCCCceEEecC
Confidence 88888885555532 555555554455543
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.29 E-value=3.1e-06 Score=61.37 Aligned_cols=68 Identities=25% Similarity=0.402 Sum_probs=47.6
Q ss_pred ceEEecCCCccccHHH----HHHHHhccC-ceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 254 FRIYVGNLPWEVDNAR----LEQVFSEHG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~----L~~~F~~~G-~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
+.|+|.|||...+... |++++..+| +|..|. .|.|+|.|.+.+.|.+|.+.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3699999999877654 666777775 565551 4679999999999999999999999999999999
Q ss_pred Eec
Q 019542 329 VAE 331 (339)
Q Consensus 329 ~a~ 331 (339)
|..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 973
No 147
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.26 E-value=4.7e-08 Score=97.37 Aligned_cols=163 Identities=18% Similarity=0.129 Sum_probs=127.1
Q ss_pred CCCeEEEcCCCCCCCHH-HHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 158 EDAKLFVGNLPYDVDSE-KLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e-~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
..+...+.|+-+..... ..+..|..+|.|..|++......-....++++++....+++.|... .+..+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p-a~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP-AGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccc-cccccCCccccCCCC
Confidence 34556677777776555 6788999999999999876333222333889999999999999887 777889999998888
Q ss_pred CCCCCCCCCCCCC--CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 019542 237 APRGTQPERAPRV--FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314 (339)
Q Consensus 237 ~~~~~~~~~~~~~--~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~ 314 (339)
............. ...-.++||+||+..+.+++|...|.++|.+..+++....+.++.+|+|||.|...+++.+|+..
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 7766433322211 12335899999999999999999999999999998887778899999999999999999999996
Q ss_pred hCCCeeC
Q 019542 315 LDGQNLD 321 (339)
Q Consensus 315 l~g~~l~ 321 (339)
.+++.++
T Consensus 729 ~d~~~~g 735 (881)
T KOG0128|consen 729 RDSCFFG 735 (881)
T ss_pred hhhhhhh
Confidence 5554443
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.24 E-value=4.9e-07 Score=76.87 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=69.1
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
..+|||+|+-..++++-|.++|-..|+|..|.|+.++ .+..+ ||||.|.+.-++.-|+..+||..+.++.|.|.+-
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3589999999999999999999999999999998874 46666 9999999999999999999999999998888764
No 149
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.13 E-value=1.7e-06 Score=78.99 Aligned_cols=83 Identities=24% Similarity=0.464 Sum_probs=76.5
Q ss_pred CCeEE-EcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 159 DAKLF-VGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 159 ~~~vf-VgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..++| |+||+++++.++|+.+|..+|.|..+++..++.++.++|||||.|.....+..++.. +...+.|+++.+.+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 34555 999999999999999999999999999999999999999999999999999999998 8889999999999888
Q ss_pred CCCCC
Q 019542 238 PRGTQ 242 (339)
Q Consensus 238 ~~~~~ 242 (339)
+.+..
T Consensus 263 ~~~~~ 267 (285)
T KOG4210|consen 263 PRPKS 267 (285)
T ss_pred CCccc
Confidence 77554
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.05 E-value=7.4e-06 Score=63.41 Aligned_cols=71 Identities=17% Similarity=0.322 Sum_probs=45.1
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC-----CeeCCeEEEE
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG-----QNLDGRAIRV 327 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g-----~~l~gr~l~V 327 (339)
|+.|+|.+++..++.++|+..|+.||.|.+|.+.+. ...|||+|.+.+.|.+|+..+.. ..+.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 357899999999999999999999999999998654 34699999999999999997743 3566766666
Q ss_pred EE
Q 019542 328 NV 329 (339)
Q Consensus 328 ~~ 329 (339)
..
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 54
No 151
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.98 E-value=1e-05 Score=73.85 Aligned_cols=85 Identities=24% Similarity=0.332 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCee--------EEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccC
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVE--------IAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDID 227 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~--------~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~ 227 (339)
.....+|||.+||..+++++|..+|.+||.|. .|.+.+++.|++.||-|.|.|.+...|+.|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34556899999999999999999999999775 4677888999999999999999999999999999999999
Q ss_pred CceeeeeccCCCC
Q 019542 228 GRLLTVNKAAPRG 240 (339)
Q Consensus 228 gr~l~V~~a~~~~ 240 (339)
|..|.|..|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998887655
No 152
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.95 E-value=1.6e-05 Score=78.24 Aligned_cols=81 Identities=25% Similarity=0.417 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEec---CCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYN---RETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~---~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~ 232 (339)
.|....+||+||++.++++.|...|+.||+|..+++..- ...-+.+.+|||.|-+..++++|++.|+|..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 345567999999999999999999999999999988632 22346677899999999999999999999999999999
Q ss_pred eecc
Q 019542 233 VNKA 236 (339)
Q Consensus 233 V~~a 236 (339)
+-++
T Consensus 251 ~gWg 254 (877)
T KOG0151|consen 251 LGWG 254 (877)
T ss_pred eccc
Confidence 9887
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.81 E-value=1.7e-05 Score=72.49 Aligned_cols=82 Identities=26% Similarity=0.367 Sum_probs=75.4
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceE--------EEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVV--------NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 325 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~--------~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l 325 (339)
.+|||-+||..++..+|..+|.++|.|. .+.|.++++|+++||-|.|.|.+...|+.|+..+++..+.|..|
T Consensus 67 ~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~i 146 (351)
T KOG1995|consen 67 ETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTI 146 (351)
T ss_pred ccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCc
Confidence 4899999999999999999999998764 45677888999999999999999999999999999999999999
Q ss_pred EEEEeccccc
Q 019542 326 RVNVAEDRQR 335 (339)
Q Consensus 326 ~V~~a~~~~~ 335 (339)
+|.+|..+..
T Consensus 147 kvs~a~~r~~ 156 (351)
T KOG1995|consen 147 KVSLAERRTG 156 (351)
T ss_pred hhhhhhhccC
Confidence 9999987763
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.74 E-value=0.00021 Score=51.95 Aligned_cols=70 Identities=26% Similarity=0.357 Sum_probs=47.1
Q ss_pred CeEEEcCCCCCCCHHHH----HHHHhccC-CeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 160 AKLFVGNLPYDVDSEKL----AMLFEKAG-TVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L----~~~F~~~G-~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
..|+|.|||-+.....| +.++..|| .|..| ..+-|+|.|.+.+.|.+|.+.++|....|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 36899999999987665 55555676 44332 14679999999999999999999999999999999
Q ss_pred ccCCC
Q 019542 235 KAAPR 239 (339)
Q Consensus 235 ~a~~~ 239 (339)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87544
No 155
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.72 E-value=9.1e-05 Score=64.76 Aligned_cols=89 Identities=27% Similarity=0.265 Sum_probs=78.5
Q ss_pred HHHHHHHHhCCcccCCceeeeeccCCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCC
Q 019542 213 EAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETG 292 (339)
Q Consensus 213 ~a~~Al~~~~~~~l~gr~l~V~~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~ 292 (339)
-|..|-..|.+....|+.|+|.++.. . .|||.||...++.+.|.+-|+.||.|....+..| ..+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-a--------------~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~ 69 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-A--------------ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRG 69 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-c--------------eEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccc
Confidence 35666677899999999999999987 2 6999999999999999999999999998877777 568
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCC
Q 019542 293 RSRGFGFVTMSSETELNDAIAALDG 317 (339)
Q Consensus 293 ~~kg~afV~F~~~e~A~~Al~~l~g 317 (339)
++.|-++|.|...-.|.+|+..++-
T Consensus 70 k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 70 KPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred cccccchhhhhcchhHHHHHHHhcc
Confidence 8889999999999999999998743
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.68 E-value=9.3e-05 Score=66.95 Aligned_cols=79 Identities=23% Similarity=0.387 Sum_probs=62.4
Q ss_pred ceEEecCCCccccHHHH------HHHHhccCceEEEEEeeeCC-CCCcceE--EEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 019542 254 FRIYVGNLPWEVDNARL------EQVFSEHGKVVNARVVYDRE-TGRSRGF--GFVTMSSETELNDAIAALDGQNLDGRA 324 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L------~~~F~~~G~V~~v~i~~d~~-~~~~kg~--afV~F~~~e~A~~Al~~l~g~~l~gr~ 324 (339)
.-+||-+||..+..+++ .++|..||+|..|.|-+... .+..-++ .||+|.+.++|.+|+...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 36899999988877762 37899999999987765431 1222233 499999999999999999999999999
Q ss_pred EEEEEecc
Q 019542 325 IRVNVAED 332 (339)
Q Consensus 325 l~V~~a~~ 332 (339)
|+..|...
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99988643
No 157
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00024 Score=68.43 Aligned_cols=76 Identities=30% Similarity=0.465 Sum_probs=62.2
Q ss_pred eEEecCCCcccc------HHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEE
Q 019542 255 RIYVGNLPWEVD------NARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD-GRAIRV 327 (339)
Q Consensus 255 ~l~V~nLp~~~t------ee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~-gr~l~V 327 (339)
.|+|-|+|.--. ..-|..+|+++|+|..+.++.+.+ |..+||.|++|.+..+|..|++.|||..|+ .++..|
T Consensus 60 vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 60 VVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred EEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 788999984422 234678899999999999998865 449999999999999999999999999984 567777
Q ss_pred EEec
Q 019542 328 NVAE 331 (339)
Q Consensus 328 ~~a~ 331 (339)
..-+
T Consensus 139 ~~f~ 142 (698)
T KOG2314|consen 139 RLFK 142 (698)
T ss_pred ehhh
Confidence 6543
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.55 E-value=0.00021 Score=55.28 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=38.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCC
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHR 223 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~ 223 (339)
..|+|.+++..++.++|+..|++||.|.+|.+... ...|||.|.+.+.|+.|+..+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHh
Confidence 57899999999999999999999999998877542 33799999999999999988654
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.49 E-value=0.0003 Score=63.70 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=77.5
Q ss_pred CeEEEcCCCCCCCHHH------HHHHHhccCCeeEEEEEecCCC-CCcccEE--EEEeccHHHHHHHHHHhCCcccCCce
Q 019542 160 AKLFVGNLPYDVDSEK------LAMLFEKAGTVEIAEVIYNRET-DRSRGFG--FVTMSTVEEAEKAVEMFHRYDIDGRL 230 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~------L~~~F~~~G~i~~v~~~~~~~~-g~~kg~a--fV~f~~~e~a~~Al~~~~~~~l~gr~ 230 (339)
.-+||-+||..+..++ -.++|++||.|..|-+.+...+ ....+.+ ||.|.+.++|.+|+...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4689999998887666 2578999999988766543322 2223334 99999999999999999999999999
Q ss_pred eeeeccCCCCCCCCCCCCCCCCCceEEecCCCcc---ccHHHHHHHH
Q 019542 231 LTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWE---VDNARLEQVF 274 (339)
Q Consensus 231 l~V~~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~---~tee~L~~~F 274 (339)
|+..|...+--........-..+..+|+.--... .+.++|-+.=
T Consensus 195 lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 195 LKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred EeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhh
Confidence 9999886552211111112223336776544333 4566665543
No 160
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.47 E-value=0.00016 Score=65.80 Aligned_cols=74 Identities=23% Similarity=0.561 Sum_probs=66.0
Q ss_pred ceEEecCCCccccHHHHHHHHhccC--ceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHG--KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 327 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G--~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V 327 (339)
..+|||||-|.+|++||.+.....| .+..+++.-++.+|.+||||+|-..+..+..+.+..|-.+.|.|..-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 4799999999999999999998776 6778888888899999999999999999999999999999998875444
No 161
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.46 E-value=0.0001 Score=64.36 Aligned_cols=70 Identities=21% Similarity=0.382 Sum_probs=59.8
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCC--------CCcceE----EEEEeCCHHHHHHHHHHhCCCeeCC
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRET--------GRSRGF----GFVTMSSETELNDAIAALDGQNLDG 322 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~--------~~~kg~----afV~F~~~e~A~~Al~~l~g~~l~g 322 (339)
.||+++||+.+....|+++|+.||.|-.|.+.....+ |.++++ |+|+|.+...|..+...|||..|+|
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG 155 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 7999999999999999999999999999988765433 233333 6699999999999999999999998
Q ss_pred eE
Q 019542 323 RA 324 (339)
Q Consensus 323 r~ 324 (339)
+.
T Consensus 156 kk 157 (278)
T KOG3152|consen 156 KK 157 (278)
T ss_pred CC
Confidence 74
No 162
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.33 E-value=0.00035 Score=63.58 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=65.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccC--CeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAG--TVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G--~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
..+|||||-|-+|.++|.+.+...| .+..++...+..+|++||||+|...+..+..+.++.|-...|.|+.-.|..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 4699999999999999999998777 455566677778899999999999999999999999999899988777643
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.00047 Score=66.53 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=63.7
Q ss_pred CCCeEEEcCCCCCC--C----HHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccC-Cce
Q 019542 158 EDAKLFVGNLPYDV--D----SEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDID-GRL 230 (339)
Q Consensus 158 ~~~~vfVgnLp~~~--t----~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~-gr~ 230 (339)
-...|+|-|+|--- . ..-|..+|+++|+|....+..+..+| ++||.|++|.+..+|+.|++.+||+.|. ++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 35689999999532 2 23367889999999999888887755 9999999999999999999999999884 566
Q ss_pred eeeeccC
Q 019542 231 LTVNKAA 237 (339)
Q Consensus 231 l~V~~a~ 237 (339)
+.|....
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 7776443
No 164
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.26 E-value=0.0018 Score=52.46 Aligned_cols=56 Identities=30% Similarity=0.459 Sum_probs=46.3
Q ss_pred HHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 268 ARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 268 e~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
.+|.+.|..||.|.=+|++-+ .-+|+|.+-++|.+|+. ++|..++|+.|+|+...+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 468888999999988888633 58899999999999999 999999999999998654
No 165
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.22 E-value=0.0007 Score=63.33 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=56.2
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeee---CCCC--Cc--------ceEEEEEeCCHHHHHHHHHHhCC
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYD---RETG--RS--------RGFGFVTMSSETELNDAIAALDG 317 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d---~~~~--~~--------kg~afV~F~~~e~A~~Al~~l~g 317 (339)
+.++|.+.|||.+-.-+.|..+|+.+|.|..|+|... +.++ .+ +-+|+|+|...+.|.+|.+.|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 5679999999999888999999999999999999877 3332 22 45699999999999999998754
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.17 E-value=0.0013 Score=44.21 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=42.3
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHH
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al 312 (339)
+.|.|.|.+.... +.|...|..||.|..+.+.. ...+.||+|.++.+|.+||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 3688999987755 55666899999999998852 2448999999999999986
No 167
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.09 E-value=0.003 Score=48.22 Aligned_cols=77 Identities=14% Similarity=0.205 Sum_probs=52.4
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEE-EeeeC------CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe-EE
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNAR-VVYDR------ETGRSRGFGFVTMSSETELNDAIAALDGQNLDGR-AI 325 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~-i~~d~------~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr-~l 325 (339)
+-|.|=+.|.. ....|.+.|++||.|.... +.++. .......+.-|+|.++.+|.+||. .||..+.|. .+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 35788888887 5567889999999987774 11110 001235688999999999999999 799999875 66
Q ss_pred EEEEecc
Q 019542 326 RVNVAED 332 (339)
Q Consensus 326 ~V~~a~~ 332 (339)
-|.++++
T Consensus 85 GV~~~~~ 91 (100)
T PF05172_consen 85 GVKPCDP 91 (100)
T ss_dssp EEEE-HH
T ss_pred EEEEcHH
Confidence 6888854
No 168
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0023 Score=61.34 Aligned_cols=66 Identities=29% Similarity=0.363 Sum_probs=61.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHH
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFE-KAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~-~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~ 220 (339)
.-.+.+|||||+||.-++.++|..+|. -||.|..+-|=+++.-+.++|-|=|.|.+..+..+||.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 445678999999999999999999998 799999999999977799999999999999999999986
No 169
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.99 E-value=0.002 Score=43.20 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=41.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHH
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 218 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al 218 (339)
+.|-|.+.|.+..+. +..+|.+||.|..+.+. ....+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 567888888777644 55599999999987775 33568999999999999985
No 170
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.98 E-value=0.00098 Score=64.73 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=64.3
Q ss_pred CCCCCceEEecCCCccccHHHHHHHHhc-cCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee---CCeE
Q 019542 249 VFEPGFRIYVGNLPWEVDNARLEQVFSE-HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL---DGRA 324 (339)
Q Consensus 249 ~~~~~~~l~V~nLp~~~tee~L~~~F~~-~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l---~gr~ 324 (339)
.......|+|.||-...|.-+|+.++.. .|.|+.. .+|+. |.+|||.|.+.++|.....+|||..+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHh----hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3445678999999999999999999995 5566655 33432 67899999999999999999999987 7889
Q ss_pred EEEEEecc
Q 019542 325 IRVNVAED 332 (339)
Q Consensus 325 l~V~~a~~ 332 (339)
|.+.|...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 99998753
No 171
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.92 E-value=0.0011 Score=62.10 Aligned_cols=77 Identities=23% Similarity=0.270 Sum_probs=60.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEec---CCC--CCc--------ccEEEEEeccHHHHHHHHHHhCC
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYN---RET--DRS--------RGFGFVTMSTVEEAEKAVEMFHR 223 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~---~~~--g~~--------kg~afV~f~~~e~a~~Al~~~~~ 223 (339)
.++++|.+-|||.+-..+.|.++|+.+|.|..|+|+.- +.. +.. +-.|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47899999999999999999999999999999999865 222 223 34599999999999999999865
Q ss_pred cccCCceeee
Q 019542 224 YDIDGRLLTV 233 (339)
Q Consensus 224 ~~l~gr~l~V 233 (339)
..-.-.-|+|
T Consensus 309 e~~wr~glkv 318 (484)
T KOG1855|consen 309 EQNWRMGLKV 318 (484)
T ss_pred hhhhhhcchh
Confidence 4433333343
No 172
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.85 E-value=0.0035 Score=55.98 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=52.7
Q ss_pred HHHHHHHHhccCceEEEEEeeeCCCCCc-ceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 267 NARLEQVFSEHGKVVNARVVYDRETGRS-RGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 267 ee~L~~~F~~~G~V~~v~i~~d~~~~~~-kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
++++..-+++||.|..|.|.-.+..-.. .--.||+|...++|.+|+-.|||..|+||.++.-|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4678899999999999988776422111 2247999999999999999999999999999877653
No 173
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.71 E-value=0.0059 Score=49.56 Aligned_cols=75 Identities=21% Similarity=0.284 Sum_probs=52.6
Q ss_pred CCCCCeEEEcCCCC-----CCCH----HHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCccc
Q 019542 156 PPEDAKLFVGNLPY-----DVDS----EKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI 226 (339)
Q Consensus 156 ~~~~~~vfVgnLp~-----~~t~----e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l 226 (339)
-|+..||.|.=+.. ..-. .+|...|..||.+.-+|++- +--||+|.+-..|.+|+.+ +|..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals~-dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALSL-DGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHHG-CCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHcc-CCcEE
Confidence 35667877776651 1222 36778889999988777763 3489999999999999998 99999
Q ss_pred CCceeeeeccCCC
Q 019542 227 DGRLLTVNKAAPR 239 (339)
Q Consensus 227 ~gr~l~V~~a~~~ 239 (339)
+|+.|+|....+.
T Consensus 95 ~g~~l~i~LKtpd 107 (146)
T PF08952_consen 95 NGRTLKIRLKTPD 107 (146)
T ss_dssp TTEEEEEEE----
T ss_pred CCEEEEEEeCCcc
Confidence 9999999876654
No 174
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.58 E-value=0.007 Score=59.03 Aligned_cols=75 Identities=24% Similarity=0.288 Sum_probs=62.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCccc---CCceee
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFE-KAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI---DGRLLT 232 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~-~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l---~gr~l~ 232 (339)
+.+..|+|.||=.-.|.-+|+.+++ .+|.|...+| .+-|..|||.|.+.++|......|||..+ +++.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm------DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM------DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH------HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 3567899999999999999999999 5666665532 34477899999999999999999999887 678888
Q ss_pred eeccC
Q 019542 233 VNKAA 237 (339)
Q Consensus 233 V~~a~ 237 (339)
+.|..
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 88764
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.32 E-value=0.002 Score=56.66 Aligned_cols=63 Identities=17% Similarity=0.273 Sum_probs=51.3
Q ss_pred HHHHHHHh-ccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 268 ARLEQVFS-EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 268 e~L~~~F~-~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
++|...|+ +||.|+.++|-.+. .-.-+|=+||.|...++|.+|+..|||.-+.|+.|+..++-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 55666666 89999999775442 23347779999999999999999999999999999988763
No 176
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.30 E-value=0.0032 Score=58.94 Aligned_cols=77 Identities=29% Similarity=0.505 Sum_probs=61.7
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-eeCCeEEEEEEeccc
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ-NLDGRAIRVNVAEDR 333 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~-~l~gr~l~V~~a~~~ 333 (339)
.+|++||...++..+|..+|...---.+-.++.. .||+||.+.+..-|.+|+..++|+ .+.|.++.|.++-++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 6999999999999999999986521111222222 689999999999999999999997 489999999998776
Q ss_pred ccCC
Q 019542 334 QRRS 337 (339)
Q Consensus 334 ~~~s 337 (339)
+.+|
T Consensus 77 kqrs 80 (584)
T KOG2193|consen 77 KQRS 80 (584)
T ss_pred HHHh
Confidence 6543
No 177
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.05 E-value=0.023 Score=43.36 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=50.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecC-------CCCCcccEEEEEeccHHHHHHHHHHhCCcccCCcee
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNR-------ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLL 231 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~-------~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l 231 (339)
...|.|=+.|.. ....+..+|++||.|....-.... .......+..|.|.++.+|.+||.. ||..+.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 356778888877 566788899999998766410000 1123456899999999999999998 9999988654
Q ss_pred -eeecc
Q 019542 232 -TVNKA 236 (339)
Q Consensus 232 -~V~~a 236 (339)
-|.++
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 35544
No 178
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.98 E-value=0.01 Score=55.14 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=62.1
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCC---CCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRE---TGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~---~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
.|-|.||.+.++.++++.+|...|+|..++|.-... -......|||.|.+...+..|-. |.+..+-++.|.|-..-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 799999999999999999999999999998865321 13345689999999998888777 78888878888776543
No 179
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.98 E-value=0.012 Score=50.04 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=50.4
Q ss_pred CceEEecCCCccccHHHHHHHHhc-cCce---EEEEEeeeC--CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC---C-
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSE-HGKV---VNARVVYDR--ETGRSRGFGFVTMSSETELNDAIAALDGQNLD---G- 322 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~-~G~V---~~v~i~~d~--~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~---g- 322 (339)
+.+|.|++||+.+|++++++.+.+ ++.- .++.-.... ........|||.|.+.+++......++|..+. |
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 458999999999999999997776 5554 333322221 11122445999999999999999999998762 2
Q ss_pred -eEEEEEEe
Q 019542 323 -RAIRVNVA 330 (339)
Q Consensus 323 -r~l~V~~a 330 (339)
....|.+|
T Consensus 87 ~~~~~VE~A 95 (176)
T PF03467_consen 87 EYPAVVEFA 95 (176)
T ss_dssp EEEEEEEE-
T ss_pred CcceeEEEc
Confidence 25556665
No 180
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.90 E-value=0.0044 Score=54.46 Aligned_cols=64 Identities=27% Similarity=0.278 Sum_probs=52.2
Q ss_pred HHHHHHHh-ccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 174 EKLAMLFE-KAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 174 e~L~~~F~-~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
++|...|. +||.|+.+.+..+.. -.-.|.+||.|...++|++|+..||+.-+.|++|......-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 44555555 899999887765432 45688999999999999999999999999999999987653
No 181
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.53 E-value=0.19 Score=39.17 Aligned_cols=65 Identities=9% Similarity=0.169 Sum_probs=49.2
Q ss_pred eEEecCCCccccHHHHHHHHhcc-CceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEH-GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD 321 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~-G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~ 321 (339)
.+.+...|+.++-++|..+.+.+ ..|..++|+++.. .++--++++|.+.++|..-...+||+.++
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 44455555556666776666665 5788999998842 35667999999999999999999999885
No 182
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.47 E-value=0.029 Score=57.39 Aligned_cols=83 Identities=20% Similarity=0.355 Sum_probs=70.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCC--ceee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDG--RLLT 232 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~g--r~l~ 232 (339)
.......+|+|+|+.-+....|...|..||.|..|.+- ....||||+|.+...++.|+..+-+..|+| +.|+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 44456789999999999999999999999999886663 235599999999999999999999999865 7899
Q ss_pred eeccCCCCCCC
Q 019542 233 VNKAAPRGTQP 243 (339)
Q Consensus 233 V~~a~~~~~~~ 243 (339)
|.++......+
T Consensus 525 vdla~~~~~~P 535 (975)
T KOG0112|consen 525 VDLASPPGATP 535 (975)
T ss_pred cccccCCCCCh
Confidence 99997765443
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.44 E-value=0.072 Score=36.79 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=43.6
Q ss_pred eEEecCCCccccHHHHHHHHhcc---CceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEH---GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~---G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l 315 (339)
.|+|+|+. .++.++|+.+|..| .....|..+-|. -|=|-|.+.+.|.+||.+|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 79999996 57889999999998 235577777653 3889999999999999864
No 184
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.37 E-value=0.019 Score=48.69 Aligned_cols=81 Identities=12% Similarity=0.086 Sum_probs=49.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhc-cCCe---eEEEEEecCCCC--CcccEEEEEeccHHHHHHHHHHhCCcccCC---
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEK-AGTV---EIAEVIYNRETD--RSRGFGFVTMSTVEEAEKAVEMFHRYDIDG--- 228 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~-~G~i---~~v~~~~~~~~g--~~kg~afV~f~~~e~a~~Al~~~~~~~l~g--- 228 (339)
...+|.|++||+..|++++.+.+.. ++.. ..+.-.....+. ..-.-|||.|.+.+++......++|+.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999987776 5554 233311222211 123459999999999999999999977733
Q ss_pred --ceeeeeccCC
Q 019542 229 --RLLTVNKAAP 238 (339)
Q Consensus 229 --r~l~V~~a~~ 238 (339)
....|.+|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 2344555554
No 185
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.30 E-value=0.056 Score=48.52 Aligned_cols=64 Identities=22% Similarity=0.120 Sum_probs=50.1
Q ss_pred HHHHHHHHhccCCeeEEEEEecCCCCCc-ccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 173 SEKLAMLFEKAGTVEIAEVIYNRETDRS-RGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 173 ~e~L~~~F~~~G~i~~v~~~~~~~~g~~-kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
+++++.-+.+||.|.+|.|...+.-... .--.||+|...++|.+|+-.|||..|+||.++..+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 3456777889999998887665432211 234899999999999999999999999999887644
No 186
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.28 E-value=0.011 Score=56.27 Aligned_cols=61 Identities=26% Similarity=0.346 Sum_probs=53.8
Q ss_pred cHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccc
Q 019542 266 DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 266 tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~ 333 (339)
+..+|...|.+||.|..|.+-+. --.|.|+|.+..+|-+|.. .++..|++|.|+|.|..+.
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 56899999999999999988554 2369999999999999888 7999999999999998774
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.87 E-value=0.17 Score=40.86 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=54.4
Q ss_pred CceEEecCCCccc----cHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 253 GFRIYVGNLPWEV----DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 253 ~~~l~V~nLp~~~----tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
-.+|.|+=|...+ +-..|...++.||.|.+|.+. ++..|.|.|++..+|=+|+.+++. ...|..++++
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 3488887655543 334455666889999999773 244699999999999999998877 6678999999
Q ss_pred Eec
Q 019542 329 VAE 331 (339)
Q Consensus 329 ~a~ 331 (339)
|..
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 864
No 188
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.57 E-value=0.019 Score=52.58 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=63.2
Q ss_pred CCeEEEcCCCCCCCHHHH---HHHHhccCCeeEEEEEecCC----CCCcccEEEEEeccHHHHHHHHHHhCCcccCCcee
Q 019542 159 DAKLFVGNLPYDVDSEKL---AMLFEKAGTVEIAEVIYNRE----TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLL 231 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L---~~~F~~~G~i~~v~~~~~~~----~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l 231 (339)
..-+||-+|+.....+.+ ..+|++||.|..|.+..... .+-+. -+||+|...++|..||...+|..+.|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 356888889988765554 35799999999988876552 11222 39999999999999999999999999998
Q ss_pred eeeccCCCC
Q 019542 232 TVNKAAPRG 240 (339)
Q Consensus 232 ~V~~a~~~~ 240 (339)
+..+...+-
T Consensus 156 ka~~gttky 164 (327)
T KOG2068|consen 156 KASLGTTKY 164 (327)
T ss_pred HHhhCCCcc
Confidence 888777654
No 189
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.34 E-value=0.016 Score=53.00 Aligned_cols=78 Identities=23% Similarity=0.411 Sum_probs=60.5
Q ss_pred eEEecCCCccccHHHHH---HHHhccCceEEEEEeeeCC----CCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 019542 255 RIYVGNLPWEVDNARLE---QVFSEHGKVVNARVVYDRE----TGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 327 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~---~~F~~~G~V~~v~i~~d~~----~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V 327 (339)
-+||-+|+..+..+.+. +.|..||.|..|.+.+++. .+-+ -.+||+|...++|..||...+|..+.|+.|+.
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 57788888776665554 5788899999998887752 1222 23899999999999999999999999999877
Q ss_pred EEeccc
Q 019542 328 NVAEDR 333 (339)
Q Consensus 328 ~~a~~~ 333 (339)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 775543
No 190
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.03 E-value=0.11 Score=44.36 Aligned_cols=62 Identities=23% Similarity=0.233 Sum_probs=45.8
Q ss_pred cHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeeCCeEEEEEEeccc
Q 019542 266 DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD--GQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 266 tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~--g~~l~gr~l~V~~a~~~ 333 (339)
....|+.+|..|+.+..+.+++. -+-..|.|.+.+.|.+|...|+ +..+.|..++|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 44789999999998888877643 3458899999999999999999 99999999999998543
No 191
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.01 E-value=0.0051 Score=60.72 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=97.3
Q ss_pred cCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceee
Q 019542 153 FVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232 (339)
Q Consensus 153 ~~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~ 232 (339)
....++..+|||||+.+.+..+-++.....||.|.++.... |||..|........|+..++...++|..+.
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 34556778999999999999999999999999887665542 899999999999999999999899998887
Q ss_pred eeccCCCCCCC-------CCCCCCCCC---CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEe
Q 019542 233 VNKAAPRGTQP-------ERAPRVFEP---GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTM 302 (339)
Q Consensus 233 V~~a~~~~~~~-------~~~~~~~~~---~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F 302 (339)
+..-....... ........+ .+-.+|+|+|-.+........+.-.+.....+-+.. ..+...-++|-+|
T Consensus 105 ~~~d~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s~~~~~e-~d~h~~e~~~~~~ 183 (668)
T KOG2253|consen 105 ENVDEQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAASRRQIAE-ADDHCLELEKTET 183 (668)
T ss_pred ccchhhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchhhhhhhhHH-HHHHHHHHHHhhc
Confidence 76521111000 000011111 245778888888877777666655444333332222 1122233444555
Q ss_pred CCHHHHHHHHH
Q 019542 303 SSETELNDAIA 313 (339)
Q Consensus 303 ~~~e~A~~Al~ 313 (339)
.+.....+++.
T Consensus 184 ~s~~~~~~~~~ 194 (668)
T KOG2253|consen 184 ESNSALSKEAE 194 (668)
T ss_pred ccccccCcccc
Confidence 54444444443
No 192
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.98 E-value=0.078 Score=46.79 Aligned_cols=76 Identities=24% Similarity=0.287 Sum_probs=63.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCC----cccCCceeeeec
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHR----YDIDGRLLTVNK 235 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~----~~l~gr~l~V~~ 235 (339)
..|+|.||+.-+..+.|..-|+.||+|...-++.+.. ++..+-++|.|...-.+.+|+..++. ....+++.-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 6799999999999999999999999999877776654 88899999999999999999988742 334556666654
Q ss_pred c
Q 019542 236 A 236 (339)
Q Consensus 236 a 236 (339)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 4
No 193
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.91 E-value=0.24 Score=36.20 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=40.4
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 317 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g 317 (339)
.||--..|..|...||.++|++||.|.- ..+-+ .-|||...+++.|..|+..++-
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~V-sWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYV-SWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEE-EEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEE-EEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 4554459999999999999999999753 34322 3699999999999999998753
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.62 E-value=0.9 Score=35.36 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=50.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAG-TVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDG 228 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G-~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~g 228 (339)
...+.+...|+-++-++|..+...+- .|..++++++.. .++=.+.+.|.+...|......+||..++-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34566666667777777776665553 577888887643 345569999999999999999999987754
No 195
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.34 E-value=0.54 Score=38.00 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=57.0
Q ss_pred CCCCCCeEEEcCCCCCCC-HHH---HHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCce
Q 019542 155 EPPEDAKLFVGNLPYDVD-SEK---LAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRL 230 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t-~e~---L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~ 230 (339)
..++-.||.|+=|..++. .+| +...++.||+|.+|.+. |+ --|.|.|.+..+|=+|+.+++. ...|..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR--QSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CC--ceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 456677899987776663 334 45556789999999886 33 3599999999999999999776 667777
Q ss_pred eeeeccC
Q 019542 231 LTVNKAA 237 (339)
Q Consensus 231 l~V~~a~ 237 (339)
+++.+..
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 7776643
No 196
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.19 E-value=0.65 Score=34.01 Aligned_cols=56 Identities=14% Similarity=0.321 Sum_probs=41.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHR 223 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~ 223 (339)
....+|. .|..+...||.++|+.||.|.--.| - -.-|||...+.+.+..++..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~-------dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-N-------DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-C-------TTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-c-------CCcEEEEeecHHHHHHHHHHhcc
Confidence 4556666 9999999999999999999754333 2 22599999999999999988753
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.96 E-value=0.38 Score=45.85 Aligned_cols=67 Identities=10% Similarity=0.237 Sum_probs=58.0
Q ss_pred CceEEecCCCccccHHHHHHHHhcc-CceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEH-GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD 321 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~-G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~ 321 (339)
++.|+|-.+|..++--||..++..+ -.|..++|+||... .+--++|+|.+.++|......+||..|+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 5689999999999999999999886 47899999997432 3445889999999999999999999885
No 198
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.81 E-value=0.29 Score=47.80 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=61.7
Q ss_pred cccccCCCCCCCeEEEcCCCCCCCHHHHHHHHhc--cCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCC--c
Q 019542 149 EEEEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEK--AGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHR--Y 224 (339)
Q Consensus 149 ~~~~~~~~~~~~~vfVgnLp~~~t~e~L~~~F~~--~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~--~ 224 (339)
+.+........+.|.++-||..+-.++++.+|.. |-.+..|....+.. =||+|.+..+|+.|.+.|.. .
T Consensus 165 kgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk 237 (684)
T KOG2591|consen 165 KGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVK 237 (684)
T ss_pred CccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHH
Confidence 3344455566788999999999999999999975 77788887765543 69999999999999988743 4
Q ss_pred ccCCceeeeec
Q 019542 225 DIDGRLLTVNK 235 (339)
Q Consensus 225 ~l~gr~l~V~~ 235 (339)
.|.|++|....
T Consensus 238 ~fqgKpImARI 248 (684)
T KOG2591|consen 238 TFQGKPIMARI 248 (684)
T ss_pred hhcCcchhhhh
Confidence 57777765443
No 199
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.25 E-value=0.16 Score=50.53 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=62.7
Q ss_pred CCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 249 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 249 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
...+..++||+|+-..+..+-++.+...+|.|-++.... |||..|..+.-+.+|+..++-..++|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 344566999999999999999999999999998886542 89999999999999999999999988877765
Q ss_pred E
Q 019542 329 V 329 (339)
Q Consensus 329 ~ 329 (339)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 5
No 200
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.13 E-value=0.68 Score=33.18 Aligned_cols=58 Identities=17% Similarity=0.393 Sum_probs=36.1
Q ss_pred cccHHHHHHHHhccC-----ceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 264 EVDNARLEQVFSEHG-----KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 264 ~~tee~L~~~F~~~G-----~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.++.-+|..++...+ .|-.++|. ..|+||+-.. +.|..++..|++..+.|+.|+|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 467788888887664 56677775 3389999887 5889999999999999999999875
No 201
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.94 E-value=0.77 Score=32.17 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=43.0
Q ss_pred ccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 019542 265 VDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 327 (339)
Q Consensus 265 ~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V 327 (339)
++-++++..+..|+- .+|..++ .| =||.|.+..+|.+|....+|..+.+.++.+
T Consensus 12 ~~v~d~K~~Lr~y~~---~~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 12 VTVEDFKKRLRKYRW---DRIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred ccHHHHHHHHhcCCc---ceEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 577899999999954 3455553 34 479999999999999999999988877654
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.70 E-value=0.11 Score=52.94 Aligned_cols=74 Identities=24% Similarity=0.310 Sum_probs=62.5
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee--CCeEEEEEEecc
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL--DGRAIRVNVAED 332 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l--~gr~l~V~~a~~ 332 (339)
+.++.|++-..+-.-|..+|..||.|.+++-+|+ -..|.|.|.+.+.|..|+.+|+|+.+ .|-..+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3455566777788889999999999999998887 34799999999999999999999875 688899999875
Q ss_pred cc
Q 019542 333 RQ 334 (339)
Q Consensus 333 ~~ 334 (339)
-+
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 43
No 203
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.52 E-value=0.098 Score=50.00 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=61.8
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 158 EDAKLFVGNLPYDV-DSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 158 ~~~~vfVgnLp~~~-t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
+.+.+-+.-.|+.. +.++|..+|.+||.|..|.+-.. .-.|.|+|.+..+|-.|... ++..|+||.|+|.+.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhcc-ccceecCceeEEEEe
Confidence 44566666677766 67899999999999998877544 33599999999999888776 999999999999988
Q ss_pred CCCC
Q 019542 237 APRG 240 (339)
Q Consensus 237 ~~~~ 240 (339)
.+..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 7644
No 204
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.42 E-value=1.3 Score=30.64 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=41.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcc----CCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHh
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKA----GTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 221 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~----G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~ 221 (339)
..|+|+++. +++.++|+.+|..| ++ .+|..+-+. -|=|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999985 47788999999998 53 456665433 3779999999999999753
No 205
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.20 E-value=3.7 Score=40.64 Aligned_cols=127 Identities=14% Similarity=0.188 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhcc----CCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCcee
Q 019542 157 PEDAKLFVGNLPYD-VDSEKLAMLFEKA----GTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLL 231 (339)
Q Consensus 157 ~~~~~vfVgnLp~~-~t~e~L~~~F~~~----G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l 231 (339)
...++|-|-||.|+ +...+|..+|..| |.|.+|.|+.... |+. .|..-.+.|-++
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF-Gke-------------------RM~eEeV~GP~~ 231 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF-GKE-------------------RMKEEEVHGPPK 231 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh-hHH-------------------HhhhhcccCChh
Confidence 35678999999997 4788898888865 5888888875432 211 122223344433
Q ss_pred eeeccCCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHH
Q 019542 232 TVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 311 (339)
Q Consensus 232 ~V~~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~A 311 (339)
.+........... -.+..-+.-.+.-+..|+ +.. + ..-||.|+|.+.+.|...
T Consensus 232 el~~~~e~~~~s~----------------sD~ee~~~~~~~kLR~Yq-~~r--L--------kYYyAVvecDsi~tA~~v 284 (650)
T KOG2318|consen 232 ELFKPVEEYKESE----------------SDDEEEEDVDREKLRQYQ-LNR--L--------KYYYAVVECDSIETAKAV 284 (650)
T ss_pred hhccccccCcccc----------------cchhhhhhHHHHHHHHHH-hhh--h--------eeEEEEEEecCchHHHHH
Confidence 3322111111000 011111111233333332 111 1 134899999999999999
Q ss_pred HHHhCCCeeC--CeEEEEEEe
Q 019542 312 IAALDGQNLD--GRAIRVNVA 330 (339)
Q Consensus 312 l~~l~g~~l~--gr~l~V~~a 330 (339)
...++|..+. |..|-++|-
T Consensus 285 Ye~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 285 YEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHhcCcceeccccceeeeeec
Confidence 9999999884 556666653
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.86 E-value=1.6 Score=41.83 Aligned_cols=70 Identities=11% Similarity=0.157 Sum_probs=58.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcc-CCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCC
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKA-GTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDG 228 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~-G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~g 228 (339)
..+..|+|-.+|..++..||..|...+ ..|..++++++.. .++=.+.|.|.+.++|......+||..|+.
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 337899999999999999999998865 4688899998433 234458999999999999999999988864
No 207
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.41 E-value=0.75 Score=45.07 Aligned_cols=69 Identities=16% Similarity=0.284 Sum_probs=53.7
Q ss_pred CceEEecCCCccccHHHHHHHHhc--cCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCeEEEEE
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSE--HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG--QNLDGRAIRVN 328 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~--~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g--~~l~gr~l~V~ 328 (339)
.+.|.++-||..+..|+|+.+|.. +.++.+|.+-.+. + =||+|.+..+|+.|.+.|.- +.|.|+.|-.+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------n-WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------N-WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------c-eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 357889999999999999999975 5688888886552 2 58999999999999998753 34666655433
No 208
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.17 E-value=1.4 Score=40.03 Aligned_cols=71 Identities=24% Similarity=0.316 Sum_probs=54.4
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe-EEEEEEeccc
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGR-AIRVNVAEDR 333 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr-~l~V~~a~~~ 333 (339)
=|.|-+.|.. .-.-|.++|.+||.|.+..-. ..-.+-+|+|.++-+|.+||. .||+.|+|. .|-|.-|.++
T Consensus 199 WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCcc-chhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 4666677655 446788999999999877543 234588999999999999999 699999775 5667766554
No 209
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=88.96 E-value=0.52 Score=38.59 Aligned_cols=108 Identities=11% Similarity=0.128 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCCCCCCCCCCC
Q 019542 170 DVDSEKLAMLFEK-AGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR 248 (339)
Q Consensus 170 ~~t~e~L~~~F~~-~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~~~~~~~~~~ 248 (339)
..+-..|...+.. ++....+.+..- ..++..+.|.+.+++.+++.. ....++|..+.+..-.+....... .
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~--~ 99 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEV--K 99 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhccccccccc--c
Confidence 3455566655543 232223333321 257899999999999999986 777788888888877644321111 0
Q ss_pred CCCCCceEEecCCCcc-ccHHHHHHHHhccCceEEEEE
Q 019542 249 VFEPGFRIYVGNLPWE-VDNARLEQVFSEHGKVVNARV 285 (339)
Q Consensus 249 ~~~~~~~l~V~nLp~~-~tee~L~~~F~~~G~V~~v~i 285 (339)
......=|.|.|||.. ++++-++.+.+..|.+..+..
T Consensus 100 ~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~ 137 (153)
T PF14111_consen 100 FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDE 137 (153)
T ss_pred eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEc
Confidence 0111224778899988 788889999999999988765
No 210
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.55 E-value=0.77 Score=41.62 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=54.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCce-eeeeccC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRL-LTVNKAA 237 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~-l~V~~a~ 237 (339)
+.-|-|=+.|.... .-|..+|.+||.|...-. ++.-.+-+|.|.+.-+|++||.. +|..|+|-. |-|..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 44566767776554 457789999999875433 34456899999999999999998 998887744 4566665
Q ss_pred CCC
Q 019542 238 PRG 240 (339)
Q Consensus 238 ~~~ 240 (339)
++.
T Consensus 269 Dks 271 (350)
T KOG4285|consen 269 DKS 271 (350)
T ss_pred CHH
Confidence 543
No 211
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.55 E-value=1.2 Score=38.15 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=44.7
Q ss_pred CHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhC--CcccCCceeeeeccCCC
Q 019542 172 DSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFH--RYDIDGRLLTVNKAAPR 239 (339)
Q Consensus 172 t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~--~~~l~gr~l~V~~a~~~ 239 (339)
....|+++|..++.+........ -+-..|.|.+.+.|.+|...++ +..+.|..++|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 35789999999998877666532 2348899999999999999999 89999999999988443
No 212
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=88.34 E-value=0.53 Score=42.10 Aligned_cols=67 Identities=25% Similarity=0.457 Sum_probs=44.9
Q ss_pred ceEEecCCCccc------------cHHHHHHHHhccCceEEEEEeee-C----CCCCc-----ceEE---------EEEe
Q 019542 254 FRIYVGNLPWEV------------DNARLEQVFSEHGKVVNARVVYD-R----ETGRS-----RGFG---------FVTM 302 (339)
Q Consensus 254 ~~l~V~nLp~~~------------tee~L~~~F~~~G~V~~v~i~~d-~----~~~~~-----kg~a---------fV~F 302 (339)
-||++.+||-.| ++..|+..|..||.|..|.|+.- + -+|+. +||+ ||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 488888888443 67889999999999999988742 2 22332 4443 3555
Q ss_pred CCHHHHHHHHHHhCCCee
Q 019542 303 SSETELNDAIAALDGQNL 320 (339)
Q Consensus 303 ~~~e~A~~Al~~l~g~~l 320 (339)
..----..|+..|.|..+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 555555567777777654
No 213
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=87.80 E-value=0.29 Score=36.40 Aligned_cols=72 Identities=11% Similarity=0.078 Sum_probs=46.9
Q ss_pred EEEEeccHHHHHHHHHHh-CCcccCCceeeeeccCCCCCCC-CCCCCCCCCCceEEecCCCccccHHHHHHHHh
Q 019542 204 GFVTMSTVEEAEKAVEMF-HRYDIDGRLLTVNKAAPRGTQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFS 275 (339)
Q Consensus 204 afV~f~~~e~a~~Al~~~-~~~~l~gr~l~V~~a~~~~~~~-~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~ 275 (339)
|+|+|.+...|++-++.- +...+++..++|....-..... .-......+.++|-|.|||...++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999988762 3344566666665433221111 11112233456899999999999999987654
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.49 E-value=3.7 Score=28.76 Aligned_cols=56 Identities=14% Similarity=0.061 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 169 YDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 169 ~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
..++-++++..+..|+.. ++..++ +| -||.|.+..+|++|....++..+.+..+.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 356789999999999753 333332 23 589999999999999999998887776654
No 215
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=82.45 E-value=1.3 Score=45.64 Aligned_cols=76 Identities=24% Similarity=0.250 Sum_probs=63.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCccc--CCceeeeecc
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI--DGRLLTVNKA 236 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l--~gr~l~V~~a 236 (339)
..+..+.|.+-..+-..|..+|.+||.|..++..++.. .|.|.|...+.|..|+..++|..+ .|.+.+|..|
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 34566777777888899999999999999998876544 799999999999999999998765 6888888877
Q ss_pred CCCC
Q 019542 237 APRG 240 (339)
Q Consensus 237 ~~~~ 240 (339)
..-.
T Consensus 372 k~~~ 375 (1007)
T KOG4574|consen 372 KTLP 375 (1007)
T ss_pred cccc
Confidence 6543
No 216
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=81.41 E-value=2.8 Score=44.43 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=13.7
Q ss_pred cCCCCC----CCHHHHHHHHhccC
Q 019542 165 GNLPYD----VDSEKLAMLFEKAG 184 (339)
Q Consensus 165 gnLp~~----~t~e~L~~~F~~~G 184 (339)
..|||. .+.++|..++..+.
T Consensus 416 ~elPftf~~P~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 416 SELPFTFPCPSSHEELLELLDGYS 439 (840)
T ss_pred cCCCceecCCCCHHHHHHHHhcCC
Confidence 345554 36788999988764
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=81.15 E-value=8.1 Score=27.51 Aligned_cols=58 Identities=19% Similarity=0.345 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHhccC-----CeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 170 DVDSEKLAMLFEKAG-----TVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 170 ~~t~e~L~~~F~~~G-----~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
.++..+|..++...+ .|-.|.+. ..|+||+-... .+..++..+++..+.|+.++|..|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 456777888877654 34566664 33788887654 777899999999999999999864
No 218
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.75 E-value=2.5 Score=39.88 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=43.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCe-eEEEEEecCCCCCcccEEEEEeccHHHHHHHHHH
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV-EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i-~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~ 220 (339)
...|-|-+.|....-+||...|..|+.- -.|..+-+. .||..|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4689999999999999999999998742 233333332 599999999999999987
No 219
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=77.96 E-value=2.5 Score=35.58 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=54.9
Q ss_pred eEEecCCCccc-----cHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe-EEEEE
Q 019542 255 RIYVGNLPWEV-----DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGR-AIRVN 328 (339)
Q Consensus 255 ~l~V~nLp~~~-----tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr-~l~V~ 328 (339)
++.+.+++..+ ......++|..|......++++. .++..|-|.+.+.|..|...+++..+.|. .++..
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 56667776543 22345566777766655555533 56678999999999999999999999888 88888
Q ss_pred Eeccccc
Q 019542 329 VAEDRQR 335 (339)
Q Consensus 329 ~a~~~~~ 335 (339)
++++...
T Consensus 86 faQ~~~~ 92 (193)
T KOG4019|consen 86 FAQPGHP 92 (193)
T ss_pred EccCCCc
Confidence 8876554
No 220
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=71.63 E-value=82 Score=28.85 Aligned_cols=158 Identities=13% Similarity=0.123 Sum_probs=96.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCC-------CCCcccEEEEEeccHHHHHHHHHH----hC--Cc
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRE-------TDRSRGFGFVTMSTVEEAEKAVEM----FH--RY 224 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~-------~g~~kg~afV~f~~~e~a~~Al~~----~~--~~ 224 (339)
..|.|...||..+++--.+...|-+||+|++|.++.+.. ..+......+.|-+.+.|...... |+ ..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999999999999999999987651 123345688999999887665432 11 23
Q ss_pred ccCCceeeeeccCCCC---C--CCCCCC-------------CCCCCCceEEecCCCccccHHH-HHHHH---hccC----
Q 019542 225 DIDGRLLTVNKAAPRG---T--QPERAP-------------RVFEPGFRIYVGNLPWEVDNAR-LEQVF---SEHG---- 278 (339)
Q Consensus 225 ~l~gr~l~V~~a~~~~---~--~~~~~~-------------~~~~~~~~l~V~nLp~~~tee~-L~~~F---~~~G---- 278 (339)
.+.-..|++....-+- . ...... ......+.|.|.-- ..+..++ +...+ ..-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceE
Confidence 4556666665544210 0 000000 00112334555332 3343333 22222 2223
Q ss_pred ceEEEEEeeeC--CCCCcceEEEEEeCCHHHHHHHHHHhC
Q 019542 279 KVVNARVVYDR--ETGRSRGFGFVTMSSETELNDAIAALD 316 (339)
Q Consensus 279 ~V~~v~i~~d~--~~~~~kg~afV~F~~~e~A~~Al~~l~ 316 (339)
-+++|.|+-.. ...-++.||.++|-+..-|...+.-+.
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 35666666432 334578899999999999999888775
No 221
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=71.05 E-value=3.1 Score=43.84 Aligned_cols=8 Identities=38% Similarity=0.721 Sum_probs=3.9
Q ss_pred HHHHHhcc
Q 019542 176 LAMLFEKA 183 (339)
Q Consensus 176 L~~~F~~~ 183 (339)
|.++|+.-
T Consensus 741 La~~Fk~r 748 (784)
T PF04931_consen 741 LAAIFKER 748 (784)
T ss_pred HHHHHHHH
Confidence 44555543
No 222
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.36 E-value=1.2 Score=42.36 Aligned_cols=76 Identities=7% Similarity=-0.120 Sum_probs=63.5
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+.|+..+|...++.++.-+|..||.|..+.+-+.-..|..+-.+||+-.. ..+..++..+.-+.+.|..++|.++.
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 56788999999999999999999999999888877778888899998776 56667777777777788888887764
No 223
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=63.17 E-value=6.5 Score=41.49 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=7.5
Q ss_pred CCCHHHHHHHHhccC
Q 019542 170 DVDSEKLAMLFEKAG 184 (339)
Q Consensus 170 ~~t~e~L~~~F~~~G 184 (339)
+++.+....+=.+..
T Consensus 728 ~mdDe~m~~lD~~La 742 (784)
T PF04931_consen 728 DMDDEQMMALDEQLA 742 (784)
T ss_pred ccCHHHHHHHHHHHH
Confidence 345555555544443
No 224
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=60.63 E-value=1.5 Score=42.95 Aligned_cols=70 Identities=10% Similarity=0.044 Sum_probs=53.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCccc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI 226 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l 226 (339)
...+++|+.|++++.+-.+|..++..+--+.++-+.....-.+...++||.|.---...-|+..||+..+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 4567899999999999999999999887666665544433355677899999877666667766666444
No 225
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=57.65 E-value=4.6 Score=36.31 Aligned_cols=66 Identities=14% Similarity=0.326 Sum_probs=43.5
Q ss_pred CCeEEEcCCCCCC------------CHHHHHHHHhccCCeeEEEEEec-----CCCCCc-----ccE---------EEEE
Q 019542 159 DAKLFVGNLPYDV------------DSEKLAMLFEKAGTVEIAEVIYN-----RETDRS-----RGF---------GFVT 207 (339)
Q Consensus 159 ~~~vfVgnLp~~~------------t~e~L~~~F~~~G~i~~v~~~~~-----~~~g~~-----kg~---------afV~ 207 (339)
..||++.+||-.+ +++-|+..|..||.|..|.|+.- .-+|+. .|| |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 4588998888533 56779999999999998876432 123333 344 4566
Q ss_pred eccHHHHHHHHHHhCCc
Q 019542 208 MSTVEEAEKAVEMFHRY 224 (339)
Q Consensus 208 f~~~e~a~~Al~~~~~~ 224 (339)
|..-.....|+..+.|.
T Consensus 229 fmeykgfa~amdalr~~ 245 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGM 245 (445)
T ss_pred HHHHHhHHHHHHHHhcc
Confidence 66655666666666553
No 226
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=56.94 E-value=50 Score=25.79 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=62.9
Q ss_pred EcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCc--ccCCceeeeeccCCCCC
Q 019542 164 VGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRY--DIDGRLLTVNKAAPRGT 241 (339)
Q Consensus 164 VgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~--~l~gr~l~V~~a~~~~~ 241 (339)
|.-||+-+ +.|.++|..-|+|.+|..+..-. + . .|+-.++|. .++|. |++--......
T Consensus 8 VqVlPPYT--nKLSDYfeSPGKI~svItvtqyp-------------d-n---dal~~~~G~lE~vDg~-i~IGs~q~~~s 67 (145)
T TIGR02542 8 VQVLPPYT--NKLSDYFESPGKIQSVITVTQYP-------------D-N---DALLYVHGTLEQVDGN-IRIGSGQTPAS 67 (145)
T ss_pred eEecCCcc--chhhHHhcCCCceEEEEEEeccC-------------C-c---hhhheeeeehhhccCc-EEEccCCCccc
Confidence 33467766 45899999999999886653221 1 1 122222332 12333 44432221110
Q ss_pred CCCCCCCCCCCCceEEecCCCccccHHHHHHHHhc---cCceEEEEEeeeCCCCCcceEEEEEeCCH
Q 019542 242 QPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE---HGKVVNARVVYDRETGRSRGFGFVTMSSE 305 (339)
Q Consensus 242 ~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~---~G~V~~v~i~~d~~~~~~kg~afV~F~~~ 305 (339)
- .- .....+.. |.--|+.+|-.+|+++|.. |-.|..-.+.+|.-..-+-..||.-|...
T Consensus 68 V--~i-~gTPsgnn--v~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 68 V--RI-QGTPSGNN--VIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred E--EE-ecCCCCCc--eecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 0 00 00001111 2235788999999999975 56676666777643333455688777654
No 227
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=53.35 E-value=25 Score=31.88 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=36.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHH
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVE 212 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e 212 (339)
...-|+++|||.++.-.+|+..+...|.+ -.++... ...|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCcc
Confidence 33459999999999999999999988743 2333322 24677999997653
No 228
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=52.07 E-value=22 Score=37.95 Aligned_cols=8 Identities=50% Similarity=0.887 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 019542 173 SEKLAMLF 180 (339)
Q Consensus 173 ~e~L~~~F 180 (339)
.+.|..||
T Consensus 463 K~Kl~~f~ 470 (840)
T PF04147_consen 463 KEKLQVFF 470 (840)
T ss_pred HHHHHHHH
Confidence 33344443
No 229
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=52.00 E-value=27 Score=24.65 Aligned_cols=61 Identities=16% Similarity=0.293 Sum_probs=43.9
Q ss_pred HHHHHHHhccC-ceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 268 ARLEQVFSEHG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 268 e~L~~~F~~~G-~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
.+|.+-|.++| .+..++-++.+.++.+...-+|+.....+-.. .|+=+.|+|++|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 78888888777777777778888877644333 345567788897776543
No 230
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=50.65 E-value=27 Score=27.36 Aligned_cols=56 Identities=20% Similarity=0.340 Sum_probs=30.2
Q ss_pred eEEecCCCccc---------cHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHH-HHHHHHH
Q 019542 255 RIYVGNLPWEV---------DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET-ELNDAIA 313 (339)
Q Consensus 255 ~l~V~nLp~~~---------tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e-~A~~Al~ 313 (339)
++.|-|++... +.+.|+..|..|..+. ++.+.+. .-..|+++|.|.+-- --..|++
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 45566775433 4588999999998875 5566664 356899999997633 3334444
No 231
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=50.54 E-value=21 Score=25.21 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=23.6
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 019542 296 GFGFVTMSSETELNDAIAALDGQNLDGRA 324 (339)
Q Consensus 296 g~afV~F~~~e~A~~Al~~l~g~~l~gr~ 324 (339)
.+.+|.|.|..+|.+|-+.|....+.++.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 36899999999999999998876665443
No 232
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=50.26 E-value=21 Score=38.89 Aligned_cols=7 Identities=29% Similarity=0.738 Sum_probs=2.8
Q ss_pred EEecCCC
Q 019542 256 IYVGNLP 262 (339)
Q Consensus 256 l~V~nLp 262 (339)
+.|+.+|
T Consensus 1976 ~qiRqip 1982 (3015)
T KOG0943|consen 1976 IQIRQIP 1982 (3015)
T ss_pred eeeeecC
Confidence 4444443
No 233
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=48.02 E-value=38 Score=30.77 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=36.2
Q ss_pred ceEEecCCCccccHHHHHHHHhccCce-EEEEEeeeCCCCCcceEEEEEeCCHH
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKV-VNARVVYDRETGRSRGFGFVTMSSET 306 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V-~~v~i~~d~~~~~~kg~afV~F~~~e 306 (339)
+-|+++||+.++--.||+..+.+-|.+ .++.+ .-+.|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 469999999999999999999988754 23333 224677999998753
No 234
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=47.14 E-value=38 Score=23.75 Aligned_cols=61 Identities=16% Similarity=0.298 Sum_probs=43.2
Q ss_pred HHHHHHHhccC-ceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 268 ARLEQVFSEHG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 268 e~L~~~F~~~G-~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
++|.+-|...| .|..+.-++.+.++.+...-||++....+... .++=..+.|..|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 46778888888 67777777776677777888899887766333 334456778887777643
No 235
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=47.11 E-value=16 Score=30.90 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=52.0
Q ss_pred CeEEEcCCCCCC-----CHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCc-eeee
Q 019542 160 AKLFVGNLPYDV-----DSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGR-LLTV 233 (339)
Q Consensus 160 ~~vfVgnLp~~~-----t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr-~l~V 233 (339)
.++++.+++..+ ......++|.+|.+..-..++ ++.++.-|.|.+++.|..|...++...|.|. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL------RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH------HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 457778887665 234456777777665433332 3455677899999999999999999999998 6666
Q ss_pred eccCCC
Q 019542 234 NKAAPR 239 (339)
Q Consensus 234 ~~a~~~ 239 (339)
..+.+.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 655443
No 236
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=46.81 E-value=88 Score=33.44 Aligned_cols=29 Identities=10% Similarity=0.260 Sum_probs=24.9
Q ss_pred CcccEEEEEeccHHHHHHHHHHhCCcccC
Q 019542 199 RSRGFGFVTMSTVEEAEKAVEMFHRYDID 227 (339)
Q Consensus 199 ~~kg~afV~f~~~e~a~~Al~~~~~~~l~ 227 (339)
.-+||-||+-....++..||+.+-+...+
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 46999999999999999999988776555
No 237
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=44.64 E-value=26 Score=27.51 Aligned_cols=57 Identities=16% Similarity=0.301 Sum_probs=32.0
Q ss_pred eEEEcCCCCCC---------CHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccH-HHHHHHHHH
Q 019542 161 KLFVGNLPYDV---------DSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTV-EEAEKAVEM 220 (339)
Q Consensus 161 ~vfVgnLp~~~---------t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~-e~a~~Al~~ 220 (339)
++.|-|+|... ..+.|++.|+.|.++ .++.+.... ...|++.|.|..- .....|+..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHHHH
Confidence 56777776543 557899999999876 466666554 5689999999754 444445544
No 238
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=42.50 E-value=59 Score=22.41 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=15.5
Q ss_pred HHHHHHHhccCCeeEEEEE
Q 019542 174 EKLAMLFEKAGTVEIAEVI 192 (339)
Q Consensus 174 e~L~~~F~~~G~i~~v~~~ 192 (339)
.+|+++|+.+|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6799999999998765553
No 239
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=42.37 E-value=4.7 Score=39.75 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=54.8
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGR 323 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr 323 (339)
.++||++|+++.++-.+|..+|..+..+..+-+--+....+...+++|+|+-.-....|+-+||+..+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 35799999999999999999999987776665433322233456788999988888888888998777544
No 240
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=38.07 E-value=14 Score=35.17 Aligned_cols=61 Identities=23% Similarity=0.125 Sum_probs=49.1
Q ss_pred CceEEecCCCccccH--------HHHHHHHhc--cCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 019542 253 GFRIYVGNLPWEVDN--------ARLEQVFSE--HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313 (339)
Q Consensus 253 ~~~l~V~nLp~~~te--------e~L~~~F~~--~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~ 313 (339)
.+.+|+.+.+..-.. +++...|.+ ++.+..++..++.....++|-.|++|+....|++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 346777777665444 499999999 6788888888886667789999999999999998874
No 241
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=37.06 E-value=81 Score=28.88 Aligned_cols=78 Identities=10% Similarity=0.138 Sum_probs=57.8
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeC-------CCCCcceEEEEEeCCHHHHHHHH----HHhCC--Cee
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDR-------ETGRSRGFGFVTMSSETELNDAI----AALDG--QNL 320 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~-------~~~~~kg~afV~F~~~e~A~~Al----~~l~g--~~l 320 (339)
+.|-+.|+...++--.+..-|-+||+|++|.++.+. +..+......+-|-+++.|.... +.|.. ..+
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L 95 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKL 95 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhc
Confidence 368889999999999999999999999999998775 11233456889999999877543 33332 346
Q ss_pred CCeEEEEEEec
Q 019542 321 DGRAIRVNVAE 331 (339)
Q Consensus 321 ~gr~l~V~~a~ 331 (339)
....|.|+|..
T Consensus 96 ~S~~L~lsFV~ 106 (309)
T PF10567_consen 96 KSESLTLSFVS 106 (309)
T ss_pred CCcceeEEEEE
Confidence 67777777754
No 242
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=33.47 E-value=39 Score=29.88 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=29.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEE
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIA 189 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v 189 (339)
..+...++|+-|+|..++++.|.++.+++|.+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 44566799999999999999999999999965443
No 243
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=33.44 E-value=1.8e+02 Score=29.45 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=56.0
Q ss_pred ccEEEEEeccHHHHHHHHHHhCCcccCCceeee---eccC----------CCCCCCCCCCCCCCCCceEEecCCCccccH
Q 019542 201 RGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV---NKAA----------PRGTQPERAPRVFEPGFRIYVGNLPWEVDN 267 (339)
Q Consensus 201 kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V---~~a~----------~~~~~~~~~~~~~~~~~~l~V~nLp~~~te 267 (339)
.--||+++.+...-+---..++...+.+-.|.- .|+. .+...+-.-.-.......+|+.+|...+.+
T Consensus 236 Qi~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~ 315 (621)
T COG0445 236 QIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPE 315 (621)
T ss_pred ccceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCH
Confidence 345999999988776666666655554433321 1111 111110000001122348999999888887
Q ss_pred HHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeC
Q 019542 268 ARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMS 303 (339)
Q Consensus 268 e~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~ 303 (339)
+-=.++....-..+.+.|.+. ||| |+|.
T Consensus 316 dVQ~~~irsipGlEna~i~rp-------gYA-IEYD 343 (621)
T COG0445 316 DVQEQIIRSIPGLENAEILRP-------GYA-IEYD 343 (621)
T ss_pred HHHHHHHHhCcccccceeecc-------cee-eeec
Confidence 777777788888899988764 455 5654
No 244
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=33.23 E-value=19 Score=34.26 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=51.3
Q ss_pred CCeEEEcCCCCCCCHH--------HHHHHHhc--cCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHH
Q 019542 159 DAKLFVGNLPYDVDSE--------KLAMLFEK--AGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e--------~L~~~F~~--~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~ 220 (339)
.+.+|+.+.+.....+ ++...|.. .+.+..+++.++.....++|..|++|.....+++++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 4667777777665444 89999998 78888999988887788999999999999999988753
No 245
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=33.22 E-value=56 Score=27.68 Aligned_cols=58 Identities=16% Similarity=0.082 Sum_probs=42.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCC-CCcccEEEEEeccHHHHHHHHHH
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRET-DRSRGFGFVTMSTVEEAEKAVEM 220 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~-g~~kg~afV~f~~~e~a~~Al~~ 220 (339)
.++++.. |-+...++|..+-+ |.+..+.+....+. ...+|-.||+|.+.+.|.+++..
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4677777 55555566666655 78888887665543 25689999999999999988776
No 246
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=33.12 E-value=42 Score=31.81 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=46.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCC-eeEEEEEecCCC--CCcccEEEEEeccHHHHHHHHHHhCCccc
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGT-VEIAEVIYNRET--DRSRGFGFVTMSTVEEAEKAVEMFHRYDI 226 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~-i~~v~~~~~~~~--g~~kg~afV~f~~~e~a~~Al~~~~~~~l 226 (339)
-..|.|.+||+..++.+|.+....+-. +.+........+ ..-.+.|||.|...++.......++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 357899999999999999888877532 222222211111 11256799999999998888888777654
No 247
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=32.73 E-value=58 Score=33.91 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=7.4
Q ss_pred CeEEEcCCCCCCCHHH
Q 019542 160 AKLFVGNLPYDVDSEK 175 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~ 175 (339)
...-+..+|--+..++
T Consensus 956 k~k~~~d~pvFAsaee 971 (988)
T KOG2038|consen 956 KEKGLNDSPVFASAEE 971 (988)
T ss_pred hhhccccchhhhhHHH
Confidence 3445555554333333
No 248
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=32.15 E-value=51 Score=31.21 Aligned_cols=67 Identities=12% Similarity=0.195 Sum_probs=48.9
Q ss_pred ceEEecCCCccccHHHHHHHHhccC-ceEEEEEeeeCCC--CCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHG-KVVNARVVYDRET--GRSRGFGFVTMSSETELNDAIAALDGQNL 320 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G-~V~~v~i~~d~~~--~~~kg~afV~F~~~e~A~~Al~~l~g~~l 320 (339)
..+.|.+||...++++|.+...++- .|....+...... ..-.+.|||.|.+.++...-....+|..+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3789999999999999999888864 3444433321111 12267799999999998888888888765
No 249
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=31.21 E-value=99 Score=28.55 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=37.3
Q ss_pred EEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHh
Q 019542 204 GFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFS 275 (339)
Q Consensus 204 afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~ 275 (339)
|||.|++..+|..|++.+.... ++.+++..|.+.. -|.=.||.....+..+|.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~--------------DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD--------------DIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc--------------cccccccCCChHHHHHHHHHH
Confidence 7999999999999999755433 3445666554332 366667766666666665554
No 250
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.35 E-value=1.2e+02 Score=29.12 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=44.3
Q ss_pred ceEEecCCCccccHHHHHHHHhccCc-eEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGK-VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~-V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~ 314 (339)
..|-|.++|.....+||...|..|+. -..|.++-| .+||--|.+...|..||-.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 47889999999999999999999964 345555544 3799999999999999984
No 251
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=29.98 E-value=1.9e+02 Score=20.89 Aligned_cols=54 Identities=9% Similarity=0.164 Sum_probs=38.2
Q ss_pred EecCCCccccHHHHHHHHhc-cC-ceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 019542 257 YVGNLPWEVDNARLEQVFSE-HG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313 (339)
Q Consensus 257 ~V~nLp~~~tee~L~~~F~~-~G-~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~ 313 (339)
|+=.++...+..+|++.++. || .|..|+...-+ .+ .--|||++..-+.|...-.
T Consensus 17 y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~--~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 17 LTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RG--EKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--ceEEEEEECCCCcHHHHHH
Confidence 34456678899999999987 55 77777766553 22 2249999998888877544
No 252
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=28.97 E-value=2e+02 Score=21.09 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=38.0
Q ss_pred CCCccccHHHHHHHHhc-cC-ceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 019542 260 NLPWEVDNARLEQVFSE-HG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314 (339)
Q Consensus 260 nLp~~~tee~L~~~F~~-~G-~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~ 314 (339)
-.+...+.-+|++.++. || .|..|+...-+ .+ .--|||++.....|......
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHHHh
Confidence 45567889999999987 55 78888877654 22 22499999998888876543
No 253
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.97 E-value=83 Score=22.10 Aligned_cols=29 Identities=24% Similarity=0.404 Sum_probs=22.9
Q ss_pred cEEEEEeccHHHHHHHHHHhCCcccCCce
Q 019542 202 GFGFVTMSTVEEAEKAVEMFHRYDIDGRL 230 (339)
Q Consensus 202 g~afV~f~~~e~a~~Al~~~~~~~l~gr~ 230 (339)
.+++|.|.+..+|.+|-+.+....+.++-
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 47899999999999999988765554443
No 254
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.92 E-value=15 Score=35.26 Aligned_cols=77 Identities=6% Similarity=-0.054 Sum_probs=59.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 161 ~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
.-|+..||-...+.++.-+|..||.|..+.+.+..+.|..+-.+|+.-.. ..+..|+.-+.-..+.|..++|..+..
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 35677889999999999999999999998887777777777778887654 445667766666677788888876643
No 255
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=26.90 E-value=92 Score=26.43 Aligned_cols=57 Identities=18% Similarity=0.051 Sum_probs=37.0
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCC-CCcceEEEEEeCCHHHHHHHHHH
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRET-GRSRGFGFVTMSSETELNDAIAA 314 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~-~~~kg~afV~F~~~e~A~~Al~~ 314 (339)
.++|.. +.+..-++|.++-+ |.+..+...+.... ...+|-.||+|.+.++|..++..
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 356665 33333445555545 67777766544221 25689999999999999987773
No 256
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=24.59 E-value=1e+02 Score=30.18 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=8.6
Q ss_pred CcccCCceeeeec
Q 019542 223 RYDIDGRLLTVNK 235 (339)
Q Consensus 223 ~~~l~gr~l~V~~ 235 (339)
.-.+.||+|.|..
T Consensus 423 SGSMrGRpItvAa 435 (620)
T COG4547 423 SGSMRGRPITVAA 435 (620)
T ss_pred CCCcCCcceehhH
Confidence 3456788888753
No 257
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.72 E-value=1.3e+02 Score=30.04 Aligned_cols=66 Identities=20% Similarity=0.144 Sum_probs=49.2
Q ss_pred CCCCCeEEEcCCCCCCC---HHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCcee
Q 019542 156 PPEDAKLFVGNLPYDVD---SEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLL 231 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t---~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l 231 (339)
|-+..-=+||||+.=.. ...+.++=.+||+|-.+++-.. -.|.-.+.+.|..|+.. ++..+.+|+.
T Consensus 29 PGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 29 PGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred cCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 33445567899885443 3555666668999998777322 36888999999999998 8999999986
No 258
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=22.53 E-value=41 Score=27.12 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=39.4
Q ss_pred HHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccc
Q 019542 267 NARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 267 ee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~ 333 (339)
...|..+....|.+.-..+ +.|+..++|.+.+++.+++. .....++|..|.++.-.+.
T Consensus 35 ~~~l~~~W~~~~~~~i~~l--------~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 35 EQELAKIWKLKGGVKIRDL--------GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPD 92 (153)
T ss_pred HHHHHHHhCCCCcEEEEEe--------CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccc
Confidence 3444444445555544444 25789999999999999988 4556678887777766543
No 259
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.02 E-value=1.4e+02 Score=30.11 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=31.5
Q ss_pred CCCCCceEEecCCCcc-ccHHHHHHHHhcc----CceEEEEEeee
Q 019542 249 VFEPGFRIYVGNLPWE-VDNARLEQVFSEH----GKVVNARVVYD 288 (339)
Q Consensus 249 ~~~~~~~l~V~nLp~~-~tee~L~~~F~~~----G~V~~v~i~~d 288 (339)
......+|-|.|+.|+ +...+|.-+|+.| |.|.+|.|..-
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS 214 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS 214 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh
Confidence 3444568999999998 7889999999876 58888887543
No 260
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=22.01 E-value=3.5e+02 Score=26.14 Aligned_cols=211 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred cccccccccccccCCCCCCccCCCCccccCCCCCCCCCCCCcccccccccccccccCCcccccccCC--CCCCCeEEEcC
Q 019542 89 NTTITLEQEQEENGEEEPNWENQGADETEGNLSDWGEPEGEDTVVEAGERQEESGEEGVFEEEEFVE--PPEDAKLFVGN 166 (339)
Q Consensus 89 ~~~~~~eee~e~e~~ee~~~e~~~~de~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vfVgn 166 (339)
+.+-+..+..+--..++......+-.++-+...+..-....+...+...+.++.......+.....+ -.+...|-|-|
T Consensus 74 e~e~e~~e~sei~~~~~v~~a~~el~dey~~a~~e~~~s~sess~es~~ESeeE~~~EisE~ag~~pe~G~~tkrLAvVn 153 (622)
T COG5638 74 ELENESSESSEITDNEEVASASSELTDEYDPARGEGIISTSESSDESREESEEEKANEISEKAGAVPEEGNPTKRLAVVN 153 (622)
T ss_pred HhhcccccccccccchhhhhccccCCccccccCCcceecccccCcchhhhhhhhhhhhhhhhccCccCCCCcccceeEee
Q ss_pred CCCC-CCHHHHHHHHhcc----CCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCCCC
Q 019542 167 LPYD-VDSEKLAMLFEKA----GTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 241 (339)
Q Consensus 167 Lp~~-~t~e~L~~~F~~~----G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~~~ 241 (339)
|.|+ +...+|...|+.| |.+..|.|+.... .-..|....+.|-+-.+.....+..
T Consensus 154 mDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsef--------------------GkeRm~~e~vqGpprdif~~~d~~~ 213 (622)
T COG5638 154 MDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEF--------------------GKERMAAEHVQGPPRDIFTPADNQP 213 (622)
T ss_pred cccccchHHHHHHHHHhhCCCCCccceeEechhhh--------------------hHHHHhHhhccCCchhhccccccCc
Q ss_pred CCCCCCCCCCCCceEEecCCCccccH-HHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 019542 242 QPERAPRVFEPGFRIYVGNLPWEVDN-ARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL 320 (339)
Q Consensus 242 ~~~~~~~~~~~~~~l~V~nLp~~~te-e~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l 320 (339)
....-... |...+... +++..-=..-..+-.+.+....-.....-||.|.|.+...+......++|..+
T Consensus 214 ssqk~~~d----------n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Ey 283 (622)
T COG5638 214 SSQKFGDD----------NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEY 283 (622)
T ss_pred chhccCCc----------cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCcccc
Q ss_pred --CCeEEEEEE
Q 019542 321 --DGRAIRVNV 329 (339)
Q Consensus 321 --~gr~l~V~~ 329 (339)
.+..+-++|
T Consensus 284 e~san~~DLRf 294 (622)
T COG5638 284 ENSANVLDLRF 294 (622)
T ss_pred ccccceeeeee
No 261
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=22.00 E-value=71 Score=36.54 Aligned_cols=55 Identities=15% Similarity=0.232 Sum_probs=0.0
Q ss_pred ccccccccccccccccccccCCCCCCccCCCCccccCCCCCCCCCCCCccccccc
Q 019542 82 DQEEDKDNTTITLEQEQEENGEEEPNWENQGADETEGNLSDWGEPEGEDTVVEAG 136 (339)
Q Consensus 82 ~~e~~~~~~~~~~eee~e~e~~ee~~~e~~~~de~e~~~~~~~e~~~~~~~~~~~ 136 (339)
++|+--......++++++++++++++++++++++++++.-...++++++.+..+.
T Consensus 141 ~eed~~~~~~~~~d~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~de~~~~~~ge~ 195 (2849)
T PTZ00415 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGED 195 (2849)
T ss_pred chhhcCcccccccCCccccccccccccccccccccccccccCCCchhccCCCCcc
Done!