Query 019542
Match_columns 339
No_of_seqs 343 out of 2389
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 03:24:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 1.4E-36 4.6E-41 266.2 18.7 170 157-334 13-182 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 1.4E-35 4.7E-40 248.2 21.6 166 160-332 1-166 (166)
3 1l3k_A Heterogeneous nuclear r 100.0 9.7E-36 3.3E-40 256.4 20.5 178 155-336 9-186 (196)
4 1b7f_A Protein (SXL-lethal pro 100.0 1.5E-35 5.1E-40 248.9 20.9 165 158-330 2-168 (168)
5 1fxl_A Paraneoplastic encephal 100.0 2.5E-35 8.7E-40 246.9 21.5 164 159-330 2-167 (167)
6 2qfj_A FBP-interacting repress 100.0 7.6E-35 2.6E-39 254.6 21.1 179 158-336 27-208 (216)
7 2cjk_A Nuclear polyadenylated 100.0 5.1E-36 1.7E-40 251.7 11.4 166 158-334 2-167 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 9.9E-34 3.4E-38 239.1 19.8 166 158-331 2-175 (175)
9 2yh0_A Splicing factor U2AF 65 100.0 1.5E-33 5.3E-38 243.0 20.6 173 158-337 3-198 (198)
10 2g4b_A Splicing factor U2AF 65 100.0 2.8E-33 9.7E-38 236.0 18.9 159 158-331 3-172 (172)
11 1fje_B Nucleolin RBD12, protei 100.0 6.8E-34 2.3E-38 240.7 12.8 167 155-334 9-175 (175)
12 3smz_A Protein raver-1, ribonu 100.0 1.5E-32 5.2E-37 250.5 21.5 172 158-335 94-266 (284)
13 2ghp_A U4/U6 snRNA-associated 100.0 1.5E-32 5.2E-37 251.5 17.7 174 158-334 116-292 (292)
14 3tyt_A Heterogeneous nuclear r 100.0 8.6E-32 2.9E-36 234.2 19.2 166 158-330 3-204 (205)
15 3pgw_A U1-A; protein-RNA compl 100.0 3.5E-31 1.2E-35 241.2 22.3 168 156-331 6-281 (282)
16 2adc_A Polypyrimidine tract-bi 100.0 2.9E-31 9.8E-36 234.9 20.7 169 155-333 30-228 (229)
17 3smz_A Protein raver-1, ribonu 100.0 6.4E-31 2.2E-35 239.7 21.8 157 158-335 21-177 (284)
18 1qm9_A Polypyrimidine tract-bi 100.0 2.7E-31 9.3E-36 229.4 16.3 165 159-333 3-197 (198)
19 2ghp_A U4/U6 snRNA-associated 100.0 4.9E-31 1.7E-35 241.4 17.8 164 153-335 35-199 (292)
20 3sde_A Paraspeckle component 1 100.0 1.7E-30 5.8E-35 234.4 19.9 158 156-334 19-180 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.2E-24 4E-29 181.2 16.2 147 188-336 2-153 (158)
22 2i2y_A Fusion protein consists 99.9 2.3E-23 7.9E-28 172.0 12.7 132 198-335 10-150 (150)
23 4f25_A Polyadenylate-binding p 99.9 5.3E-23 1.8E-27 162.2 10.6 109 158-268 4-112 (115)
24 4fxv_A ELAV-like protein 1; RN 99.9 3.9E-22 1.3E-26 152.9 11.7 83 250-332 16-98 (99)
25 2lxi_A RNA-binding protein 10; 99.8 1.1E-21 3.8E-26 148.0 5.7 84 254-337 2-87 (91)
26 2lea_A Serine/arginine-rich sp 99.8 2.8E-21 9.7E-26 156.6 7.3 127 202-337 5-131 (135)
27 3s8s_A Histone-lysine N-methyl 99.8 1.7E-20 5.7E-25 146.6 11.0 83 252-334 5-87 (110)
28 3md1_A Nuclear and cytoplasmic 99.8 3.2E-20 1.1E-24 137.1 11.7 82 254-335 2-83 (83)
29 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.1E-20 1.1E-24 138.5 11.5 83 252-334 5-87 (87)
30 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.2E-20 1.1E-24 155.6 11.9 130 206-335 11-154 (165)
31 1p27_B RNA-binding protein 8A; 99.8 4.6E-20 1.6E-24 142.9 11.5 87 249-335 19-105 (106)
32 4fxv_A ELAV-like protein 1; RN 99.8 3.8E-20 1.3E-24 141.8 10.8 81 158-238 18-98 (99)
33 2lkz_A RNA-binding protein 5; 99.8 7.3E-21 2.5E-25 144.4 6.5 79 254-332 10-94 (95)
34 2cq0_A Eukaryotic translation 99.8 7.7E-20 2.6E-24 140.9 12.2 88 250-337 12-99 (103)
35 2dnz_A Probable RNA-binding pr 99.8 6E-20 2.1E-24 139.3 11.2 86 252-337 4-89 (95)
36 2do4_A Squamous cell carcinoma 99.8 1.6E-19 5.6E-24 138.3 13.5 86 250-336 14-99 (100)
37 2cpz_A CUG triplet repeat RNA- 99.8 1.2E-19 4.2E-24 142.7 12.4 87 250-336 22-108 (115)
38 3ns6_A Eukaryotic translation 99.8 1.8E-20 6.3E-25 143.8 7.5 83 253-335 6-95 (100)
39 2x1f_A MRNA 3'-END-processing 99.8 8E-20 2.7E-24 139.0 10.8 84 252-335 1-84 (96)
40 2dgo_A Cytotoxic granule-assoc 99.8 2.1E-19 7.3E-24 141.3 13.3 88 249-336 11-98 (115)
41 1whw_A Hypothetical protein ri 99.8 1.2E-19 4E-24 138.8 11.5 86 251-336 6-91 (99)
42 2dgs_A DAZ-associated protein 99.8 1.4E-19 4.9E-24 138.3 11.8 86 251-337 8-93 (99)
43 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.1E-19 3.8E-24 134.8 10.5 81 251-331 5-85 (85)
44 3p5t_L Cleavage and polyadenyl 99.8 1.7E-20 5.7E-25 141.1 6.0 84 254-337 2-87 (90)
45 1x5u_A Splicing factor 3B subu 99.8 1.3E-19 4.5E-24 140.1 11.1 87 250-336 12-98 (105)
46 2cqc_A Arginine/serine-rich sp 99.8 2.4E-19 8.3E-24 135.9 12.3 83 250-332 12-94 (95)
47 1x4h_A RNA-binding protein 28; 99.8 2.1E-19 7.1E-24 140.3 12.2 88 249-336 11-104 (111)
48 2dnm_A SRP46 splicing factor; 99.8 9.2E-20 3.2E-24 140.5 10.0 87 250-336 10-96 (103)
49 1oo0_B CG8781-PA, drosophila Y 99.8 1.4E-19 4.9E-24 141.1 11.1 88 249-336 22-109 (110)
50 1x5t_A Splicing factor 3B subu 99.8 6.8E-20 2.3E-24 139.2 9.0 85 252-336 4-89 (96)
51 2dnh_A Bruno-like 5, RNA bindi 99.8 2.9E-19 1E-23 138.1 12.6 87 250-337 12-101 (105)
52 2cpf_A RNA binding motif prote 99.8 1.2E-19 4.1E-24 138.5 10.3 85 252-336 4-91 (98)
53 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.1E-19 3.6E-24 139.8 9.9 86 251-336 10-95 (102)
54 2div_A TRNA selenocysteine ass 99.8 1.2E-19 4E-24 138.8 10.0 87 252-338 8-99 (99)
55 1x5s_A Cold-inducible RNA-bind 99.8 1.2E-19 4.1E-24 139.5 10.1 87 251-337 10-96 (102)
56 2jrs_A RNA-binding protein 39; 99.8 2.6E-19 8.7E-24 139.4 12.0 86 249-334 22-107 (108)
57 4f25_A Polyadenylate-binding p 99.8 1.8E-19 6.3E-24 141.8 11.2 81 253-335 5-85 (115)
58 2dng_A Eukaryotic translation 99.8 3.6E-19 1.2E-23 137.2 12.4 85 250-336 12-96 (103)
59 2e5h_A Zinc finger CCHC-type a 99.8 3.2E-19 1.1E-23 134.9 11.6 82 250-331 13-94 (94)
60 2cph_A RNA binding motif prote 99.8 3.3E-19 1.1E-23 138.2 11.8 87 250-336 12-100 (107)
61 2la6_A RNA-binding protein FUS 99.8 2.9E-19 1E-23 136.6 11.2 82 250-331 10-99 (99)
62 2dgx_A KIAA0430 protein; RRM d 99.8 3.3E-19 1.1E-23 135.7 11.3 85 251-338 7-95 (96)
63 3s8s_A Histone-lysine N-methyl 99.8 3.3E-19 1.1E-23 139.1 11.3 84 156-239 3-86 (110)
64 2d9p_A Polyadenylate-binding p 99.8 4.5E-19 1.5E-23 136.6 11.8 85 250-336 12-96 (103)
65 2dgp_A Bruno-like 4, RNA bindi 99.8 2.4E-19 8.1E-24 138.8 10.2 88 250-337 10-100 (106)
66 2lxi_A RNA-binding protein 10; 99.8 7.5E-20 2.6E-24 137.9 6.6 83 159-241 1-85 (91)
67 2cpe_A RNA-binding protein EWS 99.8 3.6E-19 1.2E-23 139.5 10.7 87 250-336 12-106 (113)
68 2dgv_A HnRNP M, heterogeneous 99.8 4.8E-19 1.6E-23 133.4 10.9 86 251-338 6-91 (92)
69 1wi8_A EIF-4B, eukaryotic tran 99.8 5.3E-19 1.8E-23 136.5 11.2 85 250-336 12-97 (104)
70 4a8x_A RNA-binding protein wit 99.8 4.3E-19 1.5E-23 132.5 10.1 83 253-335 4-87 (88)
71 2khc_A Testis-specific RNP-typ 99.8 4.3E-19 1.5E-23 140.1 10.4 82 250-331 37-118 (118)
72 2kxn_B Transformer-2 protein h 99.8 3.2E-19 1.1E-23 143.3 9.6 86 250-335 43-128 (129)
73 2cq3_A RNA-binding protein 9; 99.8 1.8E-18 6.1E-23 133.2 13.4 86 250-337 12-97 (103)
74 1u6f_A Tcubp1, RNA-binding pro 99.8 1.2E-18 4E-23 141.7 13.0 88 250-337 39-126 (139)
75 3ucg_A Polyadenylate-binding p 99.8 5.8E-19 2E-23 132.1 10.0 80 254-334 7-86 (89)
76 3ex7_B RNA-binding protein 8A; 99.8 5.4E-19 1.8E-23 141.2 10.4 88 249-336 18-105 (126)
77 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.1E-18 7.1E-23 132.8 13.2 85 250-336 12-96 (103)
78 2cqp_A RNA-binding protein 12; 99.8 5.2E-19 1.8E-23 134.9 9.5 84 251-334 13-96 (98)
79 3s7r_A Heterogeneous nuclear r 99.8 1.1E-18 3.6E-23 130.2 11.0 79 251-330 9-87 (87)
80 2dh8_A DAZ-associated protein 99.8 6.6E-19 2.3E-23 136.1 10.1 86 250-336 13-98 (105)
81 2fy1_A RNA-binding motif prote 99.8 5.5E-19 1.9E-23 139.3 9.8 84 252-336 6-89 (116)
82 3pgw_S U1-70K; protein-RNA com 99.8 1E-19 3.6E-24 174.9 6.6 85 251-335 100-184 (437)
83 2cqd_A RNA-binding region cont 99.8 1.2E-18 4.2E-23 137.1 11.6 85 250-335 14-98 (116)
84 3ulh_A THO complex subunit 4; 99.8 1.6E-18 5.4E-23 134.4 12.0 81 250-331 26-106 (107)
85 2hvz_A Splicing factor, argini 99.8 7.1E-19 2.4E-23 135.0 9.7 99 160-263 1-101 (101)
86 2ywk_A Putative RNA-binding pr 99.8 9.9E-19 3.4E-23 132.5 10.4 81 251-332 14-94 (95)
87 2do0_A HnRNP M, heterogeneous 99.8 2.8E-18 9.7E-23 134.5 13.3 85 250-335 12-96 (114)
88 2dnz_A Probable RNA-binding pr 99.8 3.3E-18 1.1E-22 129.6 13.2 88 156-243 2-89 (95)
89 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.1E-18 3.8E-23 129.9 10.4 83 157-239 4-86 (87)
90 2cqg_A TDP-43, TAR DNA-binding 99.8 2.9E-18 1E-22 132.0 13.1 85 250-336 12-96 (103)
91 2kt5_A RNA and export factor-b 99.8 3.4E-18 1.2E-22 136.2 13.9 87 249-336 31-117 (124)
92 2dhg_A TRNA selenocysteine ass 99.8 6.5E-19 2.2E-23 135.9 9.4 85 251-336 7-93 (104)
93 2m2b_A RNA-binding protein 10; 99.8 2.3E-19 8E-24 144.5 7.1 86 250-336 20-111 (131)
94 3lqv_A PRE-mRNA branch site pr 99.8 7.4E-19 2.5E-23 138.1 9.8 106 155-279 4-109 (115)
95 1s79_A Lupus LA protein; RRM, 99.8 4E-19 1.4E-23 137.0 8.1 79 252-332 10-88 (103)
96 1p1t_A Cleavage stimulation fa 99.8 4.3E-19 1.5E-23 136.9 8.1 83 253-335 8-90 (104)
97 3p5t_L Cleavage and polyadenyl 99.8 3.5E-19 1.2E-23 133.8 7.4 83 160-242 2-86 (90)
98 3n9u_C Cleavage and polyadenyl 99.8 8.3E-19 2.8E-23 145.5 10.3 81 253-333 55-137 (156)
99 2dgw_A Probable RNA-binding pr 99.8 2.2E-18 7.5E-23 129.6 11.7 82 252-336 9-90 (91)
100 2jwn_A Embryonic polyadenylate 99.8 3.4E-19 1.2E-23 142.0 7.7 82 253-335 36-117 (124)
101 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.2E-18 7.6E-23 142.9 12.9 88 250-337 36-123 (156)
102 2dgs_A DAZ-associated protein 99.8 3.8E-18 1.3E-22 130.4 12.9 88 155-243 6-93 (99)
103 1whw_A Hypothetical protein ri 99.8 2.9E-18 9.8E-23 131.0 12.0 88 156-243 5-92 (99)
104 2rs2_A Musashi-1, RNA-binding 99.8 1E-18 3.5E-23 136.1 9.6 86 250-336 22-107 (109)
105 2cq4_A RNA binding motif prote 99.8 4.9E-19 1.7E-23 139.0 7.6 82 253-335 25-106 (114)
106 3md1_A Nuclear and cytoplasmic 99.8 2.5E-18 8.7E-23 126.8 11.0 81 160-240 2-82 (83)
107 2lkz_A RNA-binding protein 5; 99.8 4.2E-19 1.4E-23 134.7 6.8 81 158-238 8-94 (95)
108 1x4a_A Splicing factor, argini 99.8 4.2E-18 1.4E-22 132.5 12.6 85 250-337 19-103 (109)
109 1sjq_A Polypyrimidine tract-bi 99.8 8.7E-19 3E-23 134.7 8.6 79 252-336 15-95 (105)
110 2dgo_A Cytotoxic granule-assoc 99.8 7.2E-18 2.5E-22 132.4 14.0 89 155-243 11-99 (115)
111 2do4_A Squamous cell carcinoma 99.8 6.5E-18 2.2E-22 129.3 13.3 87 154-241 12-98 (100)
112 2ek1_A RNA-binding protein 12; 99.8 6.9E-19 2.4E-23 133.4 7.6 81 252-332 14-94 (95)
113 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.3E-19 1.1E-23 136.7 5.8 83 250-334 16-99 (100)
114 2cpz_A CUG triplet repeat RNA- 99.8 4.9E-18 1.7E-22 133.5 12.6 89 155-243 21-109 (115)
115 2cq0_A Eukaryotic translation 99.8 3.3E-18 1.1E-22 131.7 11.4 88 155-242 11-98 (103)
116 1x4d_A Matrin 3; structural ge 99.8 1.4E-18 4.8E-23 133.3 9.2 80 250-335 12-94 (102)
117 2dnm_A SRP46 splicing factor; 99.8 3.2E-18 1.1E-22 131.7 11.3 89 155-243 9-97 (103)
118 1x4h_A RNA-binding protein 28; 99.8 6.8E-18 2.3E-22 131.6 13.2 89 155-243 11-105 (111)
119 1x4b_A Heterogeneous nuclear r 99.8 1.1E-18 3.9E-23 137.3 8.7 84 252-336 26-109 (116)
120 3r27_A HnRNP L, heterogeneous 99.8 2.1E-18 7.1E-23 131.3 9.8 79 250-334 18-98 (100)
121 2x1f_A MRNA 3'-END-processing 99.8 2.8E-18 9.7E-23 130.4 10.4 84 158-241 1-84 (96)
122 2mss_A Protein (musashi1); RNA 99.8 5E-19 1.7E-23 128.1 5.8 75 255-330 1-75 (75)
123 1x5s_A Cold-inducible RNA-bind 99.8 4.3E-18 1.5E-22 130.7 11.4 88 155-242 8-95 (102)
124 2cqc_A Arginine/serine-rich sp 99.8 4.1E-18 1.4E-22 129.0 11.1 85 154-238 10-94 (95)
125 2nlw_A Eukaryotic translation 99.8 1.7E-18 5.9E-23 133.9 9.1 84 251-336 13-103 (105)
126 1x5u_A Splicing factor 3B subu 99.8 5.9E-18 2E-22 130.7 12.2 89 154-242 10-98 (105)
127 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.8E-18 9.5E-23 127.2 9.9 81 156-236 4-84 (85)
128 2cpi_A CCR4-NOT transcription 99.8 2.4E-18 8.3E-23 134.5 10.0 84 252-335 14-103 (111)
129 2dhg_A TRNA selenocysteine ass 99.8 9.5E-18 3.2E-22 129.3 13.1 88 155-243 5-94 (104)
130 2fc9_A NCL protein; structure 99.8 4.1E-18 1.4E-22 130.7 11.0 84 250-337 12-95 (101)
131 2wbr_A GW182, gawky, LD47780P; 99.8 1.8E-18 6.2E-23 127.3 8.5 74 253-332 7-80 (89)
132 2dis_A Unnamed protein product 99.8 1.8E-18 6.1E-23 134.5 9.1 84 252-335 7-94 (109)
133 2cpf_A RNA binding motif prote 99.8 4E-18 1.4E-22 130.0 10.8 87 157-243 3-92 (98)
134 1x5t_A Splicing factor 3B subu 99.8 2.8E-18 9.5E-23 130.3 9.8 87 157-243 3-90 (96)
135 2la6_A RNA-binding protein FUS 99.8 4.9E-18 1.7E-22 129.8 11.1 83 154-236 8-98 (99)
136 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.5E-18 1.2E-22 131.3 10.3 89 155-243 8-96 (102)
137 2jrs_A RNA-binding protein 39; 99.8 7.8E-18 2.7E-22 130.9 12.4 86 155-240 22-107 (108)
138 1p27_B RNA-binding protein 8A; 99.8 4.4E-18 1.5E-22 131.6 10.9 84 157-240 21-104 (106)
139 1x4e_A RNA binding motif, sing 99.8 3.1E-19 1.1E-23 132.5 4.1 80 252-331 4-83 (85)
140 2cph_A RNA binding motif prote 99.8 1E-17 3.4E-22 129.8 12.9 89 155-243 11-101 (107)
141 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 7E-18 2.4E-22 137.0 12.2 81 250-330 60-140 (140)
142 2d9p_A Polyadenylate-binding p 99.8 1.1E-17 3.7E-22 128.8 12.6 88 155-244 11-98 (103)
143 3ns6_A Eukaryotic translation 99.8 1.4E-18 4.6E-23 133.3 7.2 81 158-238 5-92 (100)
144 2ki2_A SS-DNA binding protein 99.8 3.2E-19 1.1E-23 133.9 3.6 82 254-336 2-83 (90)
145 2dng_A Eukaryotic translation 99.8 8.8E-18 3E-22 129.3 11.8 87 155-243 11-97 (103)
146 2dnh_A Bruno-like 5, RNA bindi 99.8 1.6E-17 5.6E-22 128.2 13.4 87 156-243 12-101 (105)
147 2e5h_A Zinc finger CCHC-type a 99.7 6.8E-18 2.3E-22 127.6 10.7 83 154-236 11-93 (94)
148 1uaw_A Mouse-musashi-1; RNP-ty 99.7 7.7E-19 2.6E-23 127.7 5.3 76 254-330 1-76 (77)
149 2err_A Ataxin-2-binding protei 99.7 3.5E-18 1.2E-22 133.1 9.3 85 248-334 24-108 (109)
150 3s7r_A Heterogeneous nuclear r 99.7 5.8E-18 2E-22 126.1 10.1 81 155-236 7-87 (87)
151 2fc8_A NCL protein; structure 99.7 1.1E-17 3.7E-22 128.5 11.8 84 250-336 12-95 (102)
152 1x5o_A RNA binding motif, sing 99.7 1.1E-17 3.7E-22 131.2 12.0 82 251-333 23-112 (114)
153 2fy1_A RNA-binding motif prote 99.7 1.4E-17 4.8E-22 131.1 12.6 86 156-242 4-89 (116)
154 2dh8_A DAZ-associated protein 99.7 7.9E-18 2.7E-22 130.0 10.9 88 155-243 12-99 (105)
155 2dgp_A Bruno-like 4, RNA bindi 99.7 9.5E-18 3.3E-22 129.7 11.4 88 155-242 9-99 (106)
156 2cq1_A PTB-like protein L; RRM 99.7 1.2E-17 4E-22 128.1 11.7 81 250-336 12-94 (101)
157 2cpx_A Hypothetical protein FL 99.7 1.5E-18 5.2E-23 136.3 6.9 87 250-336 22-108 (115)
158 1s79_A Lupus LA protein; RRM, 99.7 4E-18 1.4E-22 131.3 9.1 81 156-238 8-88 (103)
159 1wez_A HnRNP H', FTP-3, hetero 99.7 2.5E-18 8.4E-23 132.3 7.8 84 251-337 13-96 (102)
160 2kxn_B Transformer-2 protein h 99.7 7.8E-18 2.7E-22 135.1 11.1 88 153-240 40-127 (129)
161 1fj7_A Nucleolin RBD1, protein 99.7 7.2E-19 2.4E-23 134.9 4.4 85 251-337 15-99 (101)
162 2div_A TRNA selenocysteine ass 99.7 8.7E-18 3E-22 128.3 10.4 85 156-240 6-95 (99)
163 1wex_A Hypothetical protein (r 99.7 7.6E-18 2.6E-22 129.9 10.0 81 250-336 12-94 (104)
164 2cpe_A RNA-binding protein EWS 99.7 1.1E-17 3.6E-22 131.1 11.0 89 155-243 11-107 (113)
165 2cpy_A RNA-binding protein 12; 99.7 3.2E-18 1.1E-22 134.4 8.0 82 251-334 13-95 (114)
166 1why_A Hypothetical protein ri 99.7 1.5E-17 5.1E-22 126.6 11.3 80 251-336 15-96 (97)
167 2dnq_A RNA-binding protein 4B; 99.7 1.3E-17 4.3E-22 125.2 10.8 79 251-337 6-84 (90)
168 1wg5_A Heterogeneous nuclear r 99.7 9.9E-18 3.4E-22 129.4 10.4 82 251-334 13-95 (104)
169 1oo0_B CG8781-PA, drosophila Y 99.7 7.3E-18 2.5E-22 131.3 9.7 86 156-241 23-108 (110)
170 2ad9_A Polypyrimidine tract-bi 99.7 7.7E-18 2.6E-22 132.6 9.8 81 250-336 28-110 (119)
171 1rk8_A CG8781-PA, CG8781-PA pr 99.7 8.1E-18 2.8E-22 140.9 10.5 87 156-242 69-155 (165)
172 3ucg_A Polyadenylate-binding p 99.7 1.1E-17 3.9E-22 125.0 10.3 80 159-239 6-85 (89)
173 2a3j_A U1 small nuclear ribonu 99.7 7.4E-18 2.5E-22 134.7 9.8 83 250-335 26-112 (127)
174 2e5j_A Methenyltetrahydrofolat 99.7 1.4E-17 4.7E-22 126.8 10.8 81 250-335 16-96 (97)
175 4a8x_A RNA-binding protein wit 99.7 8.3E-18 2.8E-22 125.4 9.3 83 158-240 3-86 (88)
176 2dgv_A HnRNP M, heterogeneous 99.7 2.3E-17 7.8E-22 124.2 11.8 84 156-241 5-88 (92)
177 1wi8_A EIF-4B, eukaryotic tran 99.7 1.5E-17 5.1E-22 128.3 11.0 87 155-243 11-98 (104)
178 1wel_A RNA-binding protein 12; 99.7 2.4E-18 8.1E-23 137.2 6.7 84 250-334 22-105 (124)
179 1x4e_A RNA binding motif, sing 99.7 4.2E-18 1.4E-22 126.3 7.5 82 156-237 2-83 (85)
180 2db1_A Heterogeneous nuclear r 99.7 7.3E-18 2.5E-22 133.2 9.3 81 251-333 15-98 (118)
181 1fjc_A Nucleolin RBD2, protein 99.7 5.7E-18 2E-22 128.6 8.2 83 251-338 14-96 (96)
182 2ywk_A Putative RNA-binding pr 99.7 1.4E-17 4.9E-22 126.1 10.4 83 155-238 12-94 (95)
183 2jvr_A Nucleolar protein 3; RN 99.7 8E-18 2.7E-22 131.2 8.9 79 252-334 27-106 (111)
184 1x4c_A Splicing factor, argini 99.7 2.8E-17 9.4E-22 127.7 11.9 79 251-336 13-96 (108)
185 2rs2_A Musashi-1, RNA-binding 99.7 1.2E-17 4.1E-22 130.1 9.7 87 155-242 21-107 (109)
186 2dnn_A RNA-binding protein 12; 99.7 6.7E-18 2.3E-22 131.3 8.3 78 253-333 16-93 (109)
187 1sjq_A Polypyrimidine tract-bi 99.7 2E-17 6.9E-22 127.1 10.8 83 155-243 12-96 (105)
188 2cpj_A Non-POU domain-containi 99.7 1.1E-17 3.8E-22 127.8 9.4 82 249-336 11-92 (99)
189 2m2b_A RNA-binding protein 10; 99.7 1.2E-17 4.2E-22 134.4 10.0 84 157-241 21-110 (131)
190 1u6f_A Tcubp1, RNA-binding pro 99.7 5.3E-17 1.8E-21 131.8 13.8 90 155-244 38-127 (139)
191 2cqg_A TDP-43, TAR DNA-binding 99.7 6E-17 2.1E-21 124.6 13.4 87 155-243 11-97 (103)
192 1wf1_A RNA-binding protein RAL 99.7 1.9E-17 6.6E-22 129.0 10.6 97 226-335 5-102 (110)
193 2cq3_A RNA-binding protein 9; 99.7 5.5E-17 1.9E-21 124.8 13.0 88 154-243 10-97 (103)
194 2hgl_A HNRPF protein, heteroge 99.7 5.1E-18 1.8E-22 137.2 7.5 81 252-334 43-126 (136)
195 2xnq_A Nuclear polyadenylated 99.7 2.6E-17 8.9E-22 125.4 11.0 78 250-335 19-97 (97)
196 2mss_A Protein (musashi1); RNA 99.7 5.8E-18 2E-22 122.5 7.0 75 161-236 1-75 (75)
197 2ek1_A RNA-binding protein 12; 99.7 5.7E-18 2E-22 128.3 7.2 83 156-238 12-94 (95)
198 3lqv_A PRE-mRNA branch site pr 99.7 1.2E-17 4E-22 131.2 9.1 81 252-335 7-87 (115)
199 2hvz_A Splicing factor, argini 99.7 5.9E-18 2E-22 129.8 7.3 79 254-337 1-79 (101)
200 3n9u_C Cleavage and polyadenyl 99.7 1.7E-17 5.7E-22 137.6 10.3 81 158-238 54-136 (156)
201 2cqd_A RNA-binding region cont 99.7 3.2E-17 1.1E-21 129.0 11.5 86 155-241 13-98 (116)
202 2cpd_A Apobec-1 stimulating pr 99.7 6.1E-17 2.1E-21 123.6 12.6 81 248-336 10-92 (99)
203 1x4g_A Nucleolysin TIAR; struc 99.7 1.9E-17 6.5E-22 128.8 9.9 79 252-336 24-102 (109)
204 1x4f_A Matrin 3; structural ge 99.7 7.3E-18 2.5E-22 131.2 7.5 81 250-336 22-105 (112)
205 1p1t_A Cleavage stimulation fa 99.7 1.6E-17 5.3E-22 128.0 9.3 83 158-240 7-89 (104)
206 3ulh_A THO complex subunit 4; 99.7 2.9E-17 9.9E-22 127.2 10.8 82 155-237 25-106 (107)
207 1nu4_A U1A RNA binding domain; 99.7 9.1E-18 3.1E-22 127.6 7.8 82 251-335 6-91 (97)
208 2dgw_A Probable RNA-binding pr 99.7 3.3E-17 1.1E-21 123.1 10.8 82 156-240 7-88 (91)
209 1iqt_A AUF1, heterogeneous nuc 99.7 2.3E-18 7.7E-23 124.6 4.2 75 255-330 1-75 (75)
210 2cqp_A RNA-binding protein 12; 99.7 1.3E-17 4.4E-22 127.1 8.6 85 156-240 12-96 (98)
211 2lcw_A RNA-binding protein FUS 99.6 3.8E-19 1.3E-23 140.1 0.0 86 251-336 5-98 (116)
212 2khc_A Testis-specific RNP-typ 99.7 1.8E-17 6E-22 130.8 9.6 82 155-236 36-117 (118)
213 2krb_A Eukaryotic translation 99.7 4.2E-18 1.4E-22 125.3 5.6 73 254-328 2-81 (81)
214 2cqi_A Nucleolysin TIAR; RNA r 99.7 8.3E-17 2.8E-21 123.8 13.1 86 155-242 11-96 (103)
215 3r27_A HnRNP L, heterogeneous 99.7 3.6E-17 1.2E-21 124.4 10.7 81 153-239 15-97 (100)
216 2dgt_A RNA-binding protein 30; 99.7 4.1E-17 1.4E-21 122.9 11.0 79 251-337 8-86 (92)
217 1wg5_A Heterogeneous nuclear r 99.7 3.4E-17 1.2E-21 126.3 10.8 84 156-241 12-96 (104)
218 2ytc_A PRE-mRNA-splicing facto 99.7 3.1E-17 1.1E-21 121.5 10.0 75 251-331 10-85 (85)
219 2j76_E EIF-4B, EIF4B, eukaryot 99.7 9.9E-18 3.4E-22 128.4 7.4 84 155-240 15-99 (100)
220 2do0_A HnRNP M, heterogeneous 99.7 1E-16 3.5E-21 125.6 13.4 86 155-241 11-96 (114)
221 2kn4_A Immunoglobulin G-bindin 99.7 4.5E-17 1.5E-21 135.1 11.9 88 156-243 67-154 (158)
222 2dgx_A KIAA0430 protein; RRM d 99.7 4.2E-17 1.4E-21 123.9 10.7 82 156-240 6-91 (96)
223 2jvo_A Nucleolar protein 3; nu 99.7 2.3E-17 7.8E-22 128.3 9.4 79 250-336 28-106 (108)
224 2dnp_A RNA-binding protein 14; 99.7 3.9E-17 1.3E-21 122.5 10.4 78 251-336 7-84 (90)
225 1uaw_A Mouse-musashi-1; RNP-ty 99.7 8E-18 2.7E-22 122.3 6.4 76 160-236 1-76 (77)
226 3ex7_B RNA-binding protein 8A; 99.7 2.9E-17 9.8E-22 131.1 10.2 88 155-242 18-105 (126)
227 2dis_A Unnamed protein product 99.7 4.2E-17 1.4E-21 126.7 10.8 87 156-242 5-95 (109)
228 1x4b_A Heterogeneous nuclear r 99.7 1.6E-17 5.5E-22 130.7 8.4 85 158-243 26-110 (116)
229 2lmi_A GRSF-1, G-rich sequence 99.7 4E-18 1.4E-22 132.3 4.7 82 251-334 9-93 (107)
230 2xs2_A Deleted in azoospermia- 99.7 1.1E-17 3.9E-22 128.4 7.3 82 252-336 8-89 (102)
231 2hgn_A Heterogeneous nuclear r 99.7 2.5E-18 8.6E-23 139.5 3.5 83 251-336 44-126 (139)
232 3q2s_C Cleavage and polyadenyl 99.7 1.1E-17 3.8E-22 147.4 7.8 81 253-333 68-150 (229)
233 2la4_A Nuclear and cytoplasmic 99.7 2E-17 6.9E-22 126.8 8.3 76 252-333 26-101 (101)
234 3q2s_C Cleavage and polyadenyl 99.7 1.8E-17 6.2E-22 146.0 9.0 81 158-238 67-149 (229)
235 2nlw_A Eukaryotic translation 99.7 5.6E-17 1.9E-21 125.3 10.6 81 158-240 14-101 (105)
236 1wez_A HnRNP H', FTP-3, hetero 99.7 2.9E-17 1E-21 126.3 8.9 84 155-241 11-94 (102)
237 2kt5_A RNA and export factor-b 99.7 1.3E-16 4.4E-21 127.0 13.0 88 155-243 31-118 (124)
238 2dgu_A Heterogeneous nuclear r 99.7 7.7E-17 2.6E-21 124.0 11.2 78 251-336 9-86 (103)
239 2j8a_A Histone-lysine N-methyl 99.7 2.3E-17 7.7E-22 129.5 8.1 80 254-333 3-96 (136)
240 2ki2_A SS-DNA binding protein 99.7 6.3E-18 2.2E-22 126.8 4.8 82 160-242 2-83 (90)
241 3pgw_S U1-70K; protein-RNA com 99.7 1.6E-17 5.3E-22 159.7 8.6 85 157-241 100-184 (437)
242 2kvi_A Nuclear polyadenylated 99.7 3.1E-17 1.1E-21 124.6 8.4 78 251-336 8-86 (96)
243 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.1E-16 3.7E-21 132.6 12.3 86 156-241 36-121 (156)
244 4f02_A Polyadenylate-binding p 99.7 7E-17 2.4E-21 140.7 11.7 84 251-334 13-96 (213)
245 2jwn_A Embryonic polyadenylate 99.7 6E-17 2E-21 128.9 10.3 83 159-242 36-118 (124)
246 2krb_A Eukaryotic translation 99.7 2.3E-17 7.7E-22 121.3 7.2 74 159-234 1-81 (81)
247 1x4a_A Splicing factor, argini 99.7 2.1E-16 7.1E-21 122.8 12.9 85 155-242 18-102 (109)
248 1fxl_A Paraneoplastic encephal 99.7 9.6E-17 3.3E-21 133.4 11.8 83 253-335 2-84 (167)
249 2ad9_A Polypyrimidine tract-bi 99.7 1.1E-16 3.9E-21 125.8 11.4 84 154-243 26-111 (119)
250 1x5o_A RNA binding motif, sing 99.7 1.6E-16 5.5E-21 124.5 12.2 83 156-239 22-112 (114)
251 1b7f_A Protein (SXL-lethal pro 99.7 7.5E-17 2.6E-21 134.4 10.9 84 252-335 2-85 (168)
252 2cq4_A RNA binding motif prote 99.7 3.8E-17 1.3E-21 128.1 8.5 81 158-239 24-104 (114)
253 2cpx_A Hypothetical protein FL 99.7 3.7E-17 1.3E-21 128.3 8.4 90 154-243 20-109 (115)
254 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1E-16 3.6E-21 130.0 11.3 82 155-236 59-140 (140)
255 2hgl_A HNRPF protein, heteroge 99.7 3.3E-17 1.1E-21 132.4 8.1 81 156-238 41-124 (136)
256 2cpy_A RNA-binding protein 12; 99.7 2.5E-17 8.5E-22 129.3 7.2 84 155-240 11-95 (114)
257 1wex_A Hypothetical protein (r 99.7 2.1E-16 7.1E-21 121.8 12.2 82 155-242 11-94 (104)
258 2wbr_A GW182, gawky, LD47780P; 99.7 7.4E-17 2.5E-21 118.7 9.0 73 158-236 6-78 (89)
259 2cqh_A IGF-II mRNA-binding pro 99.7 4.2E-17 1.4E-21 123.0 8.0 78 252-336 7-86 (93)
260 2lea_A Serine/arginine-rich sp 99.7 3.5E-17 1.2E-21 132.4 8.0 88 156-243 44-131 (135)
261 2dha_A FLJ20171 protein; RRM d 99.7 1.8E-17 6.3E-22 131.6 6.1 79 253-333 23-105 (123)
262 1iqt_A AUF1, heterogeneous nuc 99.7 1.8E-17 6.1E-22 119.8 5.6 75 161-236 1-75 (75)
263 2db1_A Heterogeneous nuclear r 99.7 3.6E-17 1.2E-21 129.2 7.7 81 156-238 14-97 (118)
264 3egn_A RNA-binding protein 40; 99.7 1.6E-17 5.5E-22 135.7 5.7 84 251-334 43-131 (143)
265 1whx_A Hypothetical protein ri 99.7 5.4E-17 1.8E-21 126.8 8.4 76 253-334 10-85 (111)
266 2cq1_A PTB-like protein L; RRM 99.7 2.5E-16 8.5E-21 120.7 11.9 83 154-242 10-94 (101)
267 2cpi_A CCR4-NOT transcription 99.7 8.9E-17 3E-21 125.5 9.5 87 155-241 11-103 (111)
268 2dnq_A RNA-binding protein 4B; 99.7 3.3E-16 1.1E-20 117.4 12.2 80 156-243 5-84 (90)
269 2fc9_A NCL protein; structure 99.7 1.4E-16 4.7E-21 122.1 10.1 84 155-242 11-94 (101)
270 1wel_A RNA-binding protein 12; 99.7 3.3E-17 1.1E-21 130.6 6.6 83 155-238 21-103 (124)
271 1fj7_A Nucleolin RBD1, protein 99.7 2E-17 6.9E-22 126.8 5.2 85 156-242 14-98 (101)
272 2a3j_A U1 small nuclear ribonu 99.7 1.5E-16 5.2E-21 127.0 10.4 82 156-240 26-111 (127)
273 3md3_A Nuclear and cytoplasmic 99.7 1.7E-16 5.9E-21 131.7 11.2 81 157-237 85-165 (166)
274 1x5p_A Negative elongation fac 99.7 2.9E-16 1E-20 119.4 11.6 79 250-336 12-90 (97)
275 2err_A Ataxin-2-binding protei 99.7 1.1E-16 3.9E-21 124.5 9.4 83 155-239 25-107 (109)
276 2f3j_A RNA and export factor b 99.7 1.5E-16 5.2E-21 134.6 10.9 85 250-335 85-169 (177)
277 2hgm_A HNRPF protein, heteroge 99.7 3.5E-17 1.2E-21 130.3 6.5 81 251-334 40-122 (126)
278 2lmi_A GRSF-1, G-rich sequence 99.7 4.1E-17 1.4E-21 126.6 6.5 82 156-239 8-92 (107)
279 2e5j_A Methenyltetrahydrofolat 99.7 4E-16 1.4E-20 118.6 11.3 81 155-240 15-95 (97)
280 1x4d_A Matrin 3; structural ge 99.7 1.9E-16 6.5E-21 121.4 9.5 80 155-240 11-93 (102)
281 1x4g_A Nucleolysin TIAR; struc 99.7 4.1E-16 1.4E-20 121.2 11.6 82 155-242 21-102 (109)
282 1wg1_A KIAA1579 protein, homol 99.7 1.5E-16 5E-21 118.9 8.6 76 252-334 4-79 (88)
283 1why_A Hypothetical protein ri 99.7 3.8E-16 1.3E-20 118.7 11.0 82 154-241 12-95 (97)
284 2dnp_A RNA-binding protein 14; 99.7 4.2E-16 1.4E-20 116.8 11.0 80 155-242 5-84 (90)
285 2e44_A Insulin-like growth fac 99.7 2.2E-16 7.5E-21 119.7 9.5 80 252-335 14-94 (96)
286 2jvr_A Nucleolar protein 3; RN 99.7 1.2E-16 4.1E-21 124.5 8.1 81 155-239 24-105 (111)
287 2dnn_A RNA-binding protein 12; 99.7 1.7E-16 5.8E-21 123.3 8.7 77 159-238 16-92 (109)
288 2la4_A Nuclear and cytoplasmic 99.7 2.8E-16 9.5E-21 120.4 9.7 77 156-238 24-100 (101)
289 2e5g_A U6 snRNA-specific termi 99.7 2.3E-16 7.9E-21 119.3 9.1 78 253-336 8-85 (94)
290 2fc8_A NCL protein; structure 99.7 5E-16 1.7E-20 119.1 11.1 86 154-242 10-95 (102)
291 1x4c_A Splicing factor, argini 99.7 7.3E-16 2.5E-20 119.6 12.0 81 157-244 13-98 (108)
292 3d2w_A TAR DNA-binding protein 99.7 2.5E-16 8.4E-21 118.0 8.9 77 251-336 9-87 (89)
293 1nu4_A U1A RNA binding domain; 99.7 1.1E-16 3.8E-21 121.6 7.0 83 156-241 5-91 (97)
294 1x4f_A Matrin 3; structural ge 99.7 1.9E-16 6.5E-21 123.2 8.4 80 156-241 22-104 (112)
295 2dha_A FLJ20171 protein; RRM d 99.7 1.2E-16 4E-21 126.9 7.2 81 156-238 20-104 (123)
296 2cq2_A Hypothetical protein LO 99.7 1.8E-16 6.2E-21 123.5 8.1 79 251-335 23-108 (114)
297 2cpj_A Non-POU domain-containi 99.7 7.8E-16 2.7E-20 117.4 11.5 81 155-241 11-91 (99)
298 2dgt_A RNA-binding protein 30; 99.7 8.1E-16 2.8E-20 115.7 11.3 80 155-242 6-85 (92)
299 2hgm_A HNRPF protein, heteroge 99.7 1.7E-16 5.7E-21 126.4 7.7 81 155-238 38-120 (126)
300 1l3k_A Heterogeneous nuclear r 99.7 4.4E-16 1.5E-20 133.1 10.8 84 250-334 10-93 (196)
301 2xnq_A Nuclear polyadenylated 99.7 7.7E-16 2.6E-20 117.2 11.0 79 153-239 16-95 (97)
302 3zzy_A Polypyrimidine tract-bi 99.7 7.7E-16 2.6E-20 122.7 11.4 76 254-334 29-107 (130)
303 2cpd_A Apobec-1 stimulating pr 99.7 1.7E-15 5.7E-20 115.6 12.8 80 155-242 11-92 (99)
304 2g4b_A Splicing factor U2AF 65 99.7 3.8E-16 1.3E-20 130.7 10.0 80 158-237 93-172 (172)
305 1fjc_A Nucleolin RBD2, protein 99.6 1.8E-16 6.1E-21 120.2 7.1 81 156-241 13-93 (96)
306 2diu_A KIAA0430 protein; struc 99.6 3.1E-16 1.1E-20 116.4 8.1 71 255-335 11-86 (96)
307 2jvo_A Nucleolar protein 3; nu 99.6 6.1E-16 2.1E-20 120.1 10.2 79 155-241 27-105 (108)
308 2pe8_A Splicing factor 45; RRM 99.6 1.1E-15 3.6E-20 118.1 11.1 82 251-332 6-93 (105)
309 2yh0_A Splicing factor U2AF 65 99.6 1.1E-15 3.8E-20 130.8 12.5 86 156-241 111-196 (198)
310 2lcw_A RNA-binding protein FUS 99.5 1.2E-17 4.1E-22 131.5 0.0 86 157-242 5-98 (116)
311 2hgn_A Heterogeneous nuclear r 99.6 1.1E-16 3.6E-21 129.9 5.6 83 156-241 43-125 (139)
312 2e5g_A U6 snRNA-specific termi 99.6 1.5E-15 5.2E-20 114.7 11.6 81 156-242 5-85 (94)
313 2voo_A Lupus LA protein; RNA-b 99.6 1.8E-15 6.2E-20 129.8 13.4 121 210-333 63-187 (193)
314 1sjr_A Polypyrimidine tract-bi 99.6 6.3E-16 2.2E-20 127.8 10.1 77 254-334 47-125 (164)
315 2ytc_A PRE-mRNA-splicing facto 99.6 8.1E-16 2.8E-20 113.8 9.5 75 156-236 9-84 (85)
316 2kvi_A Nuclear polyadenylated 99.6 6.1E-16 2.1E-20 117.4 9.0 80 155-242 6-86 (96)
317 2dgu_A Heterogeneous nuclear r 99.6 2.3E-15 7.7E-20 115.7 12.0 79 157-243 9-87 (103)
318 1wf1_A RNA-binding protein RAL 99.6 1.8E-15 6.3E-20 117.7 11.4 78 156-241 24-102 (110)
319 2xs2_A Deleted in azoospermia- 99.6 2.9E-16 1E-20 120.5 6.4 81 158-241 8-88 (102)
320 3beg_B Splicing factor, argini 99.6 3.9E-16 1.3E-20 122.6 7.2 76 253-335 16-96 (115)
321 2cqh_A IGF-II mRNA-binding pro 99.6 7.2E-16 2.5E-20 116.2 8.4 80 156-242 5-86 (93)
322 1whx_A Hypothetical protein ri 99.6 7.7E-16 2.6E-20 120.2 8.6 77 158-240 9-85 (111)
323 2e5i_A Heterogeneous nuclear r 99.6 2.5E-15 8.4E-20 119.2 11.6 75 254-334 26-103 (124)
324 2i2y_A Fusion protein consists 99.6 1.8E-15 6.3E-20 124.4 10.7 81 155-240 69-149 (150)
325 3egn_A RNA-binding protein 40; 99.6 2.6E-16 9.1E-21 128.4 5.5 89 154-242 40-133 (143)
326 2e44_A Insulin-like growth fac 99.6 2E-15 6.8E-20 114.4 9.9 80 157-240 13-93 (96)
327 2f3j_A RNA and export factor b 99.6 1.2E-15 4.1E-20 129.1 9.3 84 156-240 85-168 (177)
328 2dnl_A Cytoplasmic polyadenyla 99.6 6.5E-16 2.2E-20 121.1 6.9 76 252-330 7-85 (114)
329 3tyt_A Heterogeneous nuclear r 99.6 1.5E-15 5.2E-20 131.5 9.7 77 252-333 3-80 (205)
330 2j8a_A Histone-lysine N-methyl 99.6 8.1E-16 2.8E-20 120.7 7.0 79 160-238 3-95 (136)
331 2qfj_A FBP-interacting repress 99.6 4.7E-15 1.6E-19 128.7 12.4 86 157-242 123-208 (216)
332 3nmr_A Cugbp ELAV-like family 99.6 3.6E-15 1.2E-19 124.9 11.0 83 253-335 3-90 (175)
333 2diu_A KIAA0430 protein; struc 99.6 4.9E-15 1.7E-19 110.1 10.2 75 157-241 6-86 (96)
334 1wf0_A TDP-43, TAR DNA-binding 99.6 5.1E-16 1.7E-20 115.8 5.0 78 252-336 4-81 (88)
335 1x5p_A Negative elongation fac 99.6 9.7E-15 3.3E-19 110.9 12.2 80 155-242 11-90 (97)
336 2hzc_A Splicing factor U2AF 65 99.6 1.6E-15 5.6E-20 112.6 7.6 71 252-329 5-86 (87)
337 2bz2_A Negative elongation fac 99.6 2.3E-15 7.8E-20 119.3 8.7 78 251-336 37-114 (121)
338 3u1l_A PRE-mRNA-splicing facto 99.6 3.4E-15 1.2E-19 131.4 10.5 105 222-336 107-232 (240)
339 1wg1_A KIAA1579 protein, homol 99.6 3.8E-15 1.3E-19 111.1 9.2 76 158-240 4-79 (88)
340 2dnl_A Cytoplasmic polyadenyla 99.6 6.1E-15 2.1E-19 115.5 10.1 77 157-236 6-85 (114)
341 1fje_B Nucleolin RBD12, protei 99.6 1.6E-15 5.4E-20 127.4 7.2 77 158-239 98-174 (175)
342 2cjk_A Nuclear polyadenylated 99.6 2.6E-15 8.7E-20 125.0 7.7 80 159-239 87-166 (167)
343 3d2w_A TAR DNA-binding protein 99.6 4.9E-15 1.7E-19 110.8 8.3 77 155-240 7-85 (89)
344 2hzc_A Splicing factor U2AF 65 99.6 4.7E-15 1.6E-19 110.1 7.6 72 157-235 4-86 (87)
345 2cq2_A Hypothetical protein LO 99.6 5.9E-15 2E-19 114.9 8.3 79 156-240 22-107 (114)
346 3beg_B Splicing factor, argini 99.6 6.3E-15 2.1E-19 115.7 8.3 77 158-241 15-96 (115)
347 3pgw_A U1-A; protein-RNA compl 99.6 1.4E-14 4.9E-19 131.2 11.6 81 251-334 7-91 (282)
348 2dit_A HIV TAT specific factor 99.6 2.8E-14 9.5E-19 111.4 11.5 83 250-336 12-105 (112)
349 3v4m_A Splicing factor U2AF 65 99.6 1.2E-14 4E-19 112.2 8.9 82 252-333 4-97 (105)
350 2pe8_A Splicing factor 45; RRM 99.5 2.9E-14 1E-18 109.9 10.7 82 157-238 6-93 (105)
351 1sjr_A Polypyrimidine tract-bi 99.5 4.4E-14 1.5E-18 116.7 11.8 78 159-240 46-125 (164)
352 3zzy_A Polypyrimidine tract-bi 99.5 2.9E-14 9.9E-19 113.5 10.2 76 160-240 29-107 (130)
353 1wf0_A TDP-43, TAR DNA-binding 99.5 6.7E-15 2.3E-19 109.7 6.0 78 158-242 4-81 (88)
354 1jmt_A Splicing factor U2AF 35 99.5 6.8E-15 2.3E-19 113.3 6.0 72 258-330 20-103 (104)
355 2e5i_A Heterogeneous nuclear r 99.5 8.6E-14 2.9E-18 110.2 11.8 74 161-240 27-103 (124)
356 2voo_A Lupus LA protein; RNA-b 99.5 3.2E-14 1.1E-18 121.9 9.9 79 159-239 109-187 (193)
357 2bz2_A Negative elongation fac 99.5 4.4E-14 1.5E-18 111.8 9.9 79 155-241 35-113 (121)
358 3ue2_A Poly(U)-binding-splicin 99.5 5E-14 1.7E-18 110.8 10.0 81 252-332 19-108 (118)
359 2adc_A Polypyrimidine tract-bi 99.5 2.3E-14 7.8E-19 126.1 8.6 78 251-333 32-110 (229)
360 1qm9_A Polypyrimidine tract-bi 99.5 2.5E-14 8.4E-19 122.7 6.2 76 253-333 3-79 (198)
361 3sde_A Paraspeckle component 1 99.5 1E-13 3.6E-18 124.3 10.6 78 250-333 19-96 (261)
362 2dit_A HIV TAT specific factor 99.4 8.8E-13 3E-17 102.8 11.8 84 154-241 10-104 (112)
363 3u1l_A PRE-mRNA-splicing facto 99.4 2.2E-13 7.4E-18 119.8 9.0 80 156-241 131-231 (240)
364 3v4m_A Splicing factor U2AF 65 99.4 6.2E-13 2.1E-17 102.4 8.1 82 157-238 3-96 (105)
365 1jmt_A Splicing factor U2AF 35 99.4 2.1E-13 7.2E-18 104.9 4.5 72 164-236 20-103 (104)
366 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.2E-12 7.6E-17 98.3 9.6 67 263-336 27-93 (100)
367 3ue2_A Poly(U)-binding-splicin 99.4 1.4E-12 4.6E-17 102.6 8.1 81 157-237 18-107 (118)
368 3s6e_A RNA-binding protein 39; 99.3 1.4E-12 4.6E-17 101.9 6.4 77 252-332 6-92 (114)
369 3tht_A Alkylated DNA repair pr 99.3 2.8E-12 9.7E-17 118.6 8.9 76 250-331 15-97 (345)
370 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.1E-10 3.7E-15 88.8 12.5 77 159-242 10-93 (100)
371 3tht_A Alkylated DNA repair pr 99.2 3.4E-11 1.2E-15 111.4 9.1 77 155-237 14-97 (345)
372 3s6e_A RNA-binding protein 39; 99.1 1.6E-10 5.5E-15 90.1 8.9 78 156-237 4-91 (114)
373 1owx_A Lupus LA protein, SS-B, 99.1 1.3E-10 4.5E-15 90.9 8.1 78 248-331 13-94 (121)
374 2dnr_A Synaptojanin-1; RRM dom 99.1 2.5E-10 8.6E-15 83.9 8.8 75 251-334 5-87 (91)
375 2dnr_A Synaptojanin-1; RRM dom 99.0 7.5E-10 2.6E-14 81.4 7.0 74 157-239 5-86 (91)
376 3dxb_A Thioredoxin N-terminall 99.0 1.4E-09 4.9E-14 94.8 8.5 68 265-332 141-212 (222)
377 1owx_A Lupus LA protein, SS-B, 98.9 2.3E-09 8E-14 83.8 8.2 76 155-236 14-93 (121)
378 1ufw_A Synaptojanin 2; RNP dom 98.9 1.2E-09 4E-14 80.8 5.6 73 250-331 12-93 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.8 2.6E-09 8.8E-14 78.9 5.1 75 155-238 11-94 (95)
380 3dxb_A Thioredoxin N-terminall 98.7 4E-08 1.4E-12 85.5 8.5 67 171-237 141-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.6 2.1E-07 7E-12 70.1 8.0 71 253-329 21-96 (117)
382 2dhx_A Poly (ADP-ribose) polym 98.2 1.8E-05 6.2E-10 59.1 9.9 88 158-266 7-99 (104)
383 2l9w_A U4/U6 snRNA-associated- 97.9 6.7E-05 2.3E-09 56.5 9.2 71 158-234 20-95 (117)
384 1wey_A Calcipressin 1; structu 97.8 4.9E-05 1.7E-09 57.0 6.8 76 253-334 5-85 (104)
385 1uw4_A UPF3X; nonsense mediate 97.6 0.00022 7.5E-09 52.5 7.7 77 254-330 2-85 (91)
386 1uw4_A UPF3X; nonsense mediate 97.5 0.00048 1.6E-08 50.6 7.8 68 160-227 2-71 (91)
387 2dhx_A Poly (ADP-ribose) polym 97.3 0.0016 5.4E-08 48.6 9.3 73 253-334 8-85 (104)
388 1wey_A Calcipressin 1; structu 97.2 0.0016 5.4E-08 48.8 8.0 75 159-239 5-84 (104)
389 1wwh_A Nucleoporin 35, nucleop 96.9 0.0056 1.9E-07 47.1 8.8 71 253-331 24-95 (119)
390 2l08_A Regulator of nonsense t 96.8 0.0018 6.2E-08 47.9 5.1 76 255-330 11-93 (97)
391 1whv_A Poly(A)-specific ribonu 96.5 0.0087 3E-07 44.1 7.2 53 255-316 18-70 (100)
392 2l08_A Regulator of nonsense t 96.5 0.0021 7.3E-08 47.5 3.9 70 158-227 8-79 (97)
393 1whv_A Poly(A)-specific ribonu 96.4 0.011 3.6E-07 43.6 7.1 58 156-222 13-70 (100)
394 1wwh_A Nucleoporin 35, nucleop 96.4 0.0099 3.4E-07 45.7 7.1 72 158-237 23-95 (119)
395 3ctr_A Poly(A)-specific ribonu 96.2 0.0066 2.2E-07 44.9 5.0 53 255-316 8-60 (101)
396 3ctr_A Poly(A)-specific ribonu 95.8 0.019 6.5E-07 42.4 5.9 54 160-222 7-60 (101)
397 3p3d_A Nucleoporin 53; structu 95.8 0.01 3.6E-07 46.2 4.8 76 255-332 9-98 (132)
398 3pq1_A Poly(A) RNA polymerase; 94.3 0.026 8.9E-07 53.8 3.5 57 158-220 52-108 (464)
399 3pq1_A Poly(A) RNA polymerase; 93.8 0.031 1.1E-06 53.3 3.2 54 254-313 54-107 (464)
400 3p3d_A Nucleoporin 53; structu 92.8 0.1 3.6E-06 40.6 4.1 76 160-237 8-97 (132)
401 3d45_A Poly(A)-specific ribonu 80.0 4 0.00014 39.3 7.5 54 255-317 442-495 (507)
402 3d45_A Poly(A)-specific ribonu 75.3 9 0.00031 36.8 8.4 56 159-223 440-495 (507)
403 2g0c_A ATP-dependent RNA helic 70.7 10 0.00035 25.9 5.7 58 265-331 13-75 (76)
404 4eyt_A Telomerase associated p 58.9 46 0.0016 23.7 7.8 55 253-315 12-66 (129)
405 4eyt_A Telomerase associated p 29.4 1.5E+02 0.0052 21.0 8.3 67 158-234 11-77 (129)
406 4e8u_A Putative uncharacterize 22.5 1.6E+02 0.0054 23.7 5.5 57 161-220 14-82 (172)
407 4e8u_A Putative uncharacterize 21.6 1.7E+02 0.0059 23.5 5.6 48 255-305 14-72 (172)
408 3uzu_A Ribosomal RNA small sub 20.6 68 0.0023 27.9 3.4 34 255-288 116-149 (279)
409 2i9x_A Putative septation prot 20.3 1.2E+02 0.004 21.5 3.9 26 185-210 5-30 (87)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.4e-36 Score=266.25 Aligned_cols=170 Identities=27% Similarity=0.396 Sum_probs=155.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
.+.++|||||||+++++++|+++|++||.|..|+|+++..+|+++|||||+|.+.++|.+|+..+++..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 019542 237 APRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD 316 (339)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~ 316 (339)
....... .....+|||+|||+.+++++|+++|+.||.|..++|+++. +.++|||||+|.+.++|.+|+..||
T Consensus 93 ~~~~~~~------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 93 QRDPSLR------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp CCCTHHH------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ccccccc------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhC
Confidence 6543221 1223589999999999999999999999999999999984 5589999999999999999999999
Q ss_pred CCeeCCeEEEEEEecccc
Q 019542 317 GQNLDGRAIRVNVAEDRQ 334 (339)
Q Consensus 317 g~~l~gr~l~V~~a~~~~ 334 (339)
|..|+|+.|+|.||+++.
T Consensus 165 g~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 165 GMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp TCEETTEECEEEECCCHH
T ss_pred CCEECCEEEEEEEcCCCc
Confidence 999999999999998764
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=248.25 Aligned_cols=166 Identities=26% Similarity=0.551 Sum_probs=154.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCC
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 239 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~ 239 (339)
++|||+|||+++++++|+++|++||.|..++++.++. ++++|||||+|.+.++|.+|+..+++..+.|+.|+|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999998875 789999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 019542 240 GTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 319 (339)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~ 319 (339)
... ...+.++|||+|||+.+++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+..|||..
T Consensus 80 ~~~------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 80 QQS------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CCC------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCC------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 542 23356699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEecc
Q 019542 320 LDGRAIRVNVAED 332 (339)
Q Consensus 320 l~gr~l~V~~a~~ 332 (339)
++|+.|+|.||++
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999863
No 3
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=9.7e-36 Score=256.42 Aligned_cols=178 Identities=31% Similarity=0.539 Sum_probs=154.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.+...++|||+|||+++++++|+++|+.||.|..|+++.++.+|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 344678999999999999999999999999999999999999999999999999999999999988 9999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 019542 235 KAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314 (339)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~ 314 (339)
++........ .....+.++|||+|||+.+++++|+++|+.||.|..++|++++.+|.++|||||+|.+.++|.+|+..
T Consensus 88 ~~~~~~~~~~--~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 88 RAVSREDSQR--PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp ECCC-------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred cccCcccccc--cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 9876644322 12234457999999999999999999999999999999999998999999999999999999999995
Q ss_pred hCCCeeCCeEEEEEEecccccC
Q 019542 315 LDGQNLDGRAIRVNVAEDRQRR 336 (339)
Q Consensus 315 l~g~~l~gr~l~V~~a~~~~~~ 336 (339)
+|..|+|+.|.|.|+.++...
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp -SCCEETTEECEEEECC-----
T ss_pred -CCcEECCEEEEEEecCChhHh
Confidence 899999999999999887654
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.5e-35 Score=248.86 Aligned_cols=165 Identities=27% Similarity=0.536 Sum_probs=155.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
+.++|||+|||+++++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|.+|+..+++..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 019542 238 PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 317 (339)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g 317 (339)
+.... .+.++|||+|||..+++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|+..|||
T Consensus 82 ~~~~~--------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 82 PGGES--------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp CCSST--------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCccc--------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 65532 2345999999999999999999999999999999999988999999999999999999999999999
Q ss_pred CeeCC--eEEEEEEe
Q 019542 318 QNLDG--RAIRVNVA 330 (339)
Q Consensus 318 ~~l~g--r~l~V~~a 330 (339)
..+.| +.|+|.||
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99988 99999986
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2.5e-35 Score=246.89 Aligned_cols=164 Identities=31% Similarity=0.568 Sum_probs=153.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
.++|||+|||+++++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|.+|+..+++..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999998999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 019542 239 RGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ 318 (339)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~ 318 (339)
.... .+..+|||+|||+.+++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|+..|||.
T Consensus 82 ~~~~--------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 82 SSAS--------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp CCGG--------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred Cccc--------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 5432 23458999999999999999999999999999999999889999999999999999999999999999
Q ss_pred eeCCeE--EEEEEe
Q 019542 319 NLDGRA--IRVNVA 330 (339)
Q Consensus 319 ~l~gr~--l~V~~a 330 (339)
.+.|+. |+|.||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999975 888886
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=7.6e-35 Score=254.61 Aligned_cols=179 Identities=22% Similarity=0.424 Sum_probs=158.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..++|||+|||+++++++|+++|+.||.|..|+++++..+|+++|||||+|.+.++|.+|+..+++..+.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999998876
Q ss_pred CCCCCCCC---CCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 019542 238 PRGTQPER---APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314 (339)
Q Consensus 238 ~~~~~~~~---~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~ 314 (339)
........ ......+.++|||+|||+.+++++|+++|++||.|..++|++++.+|+++|||||+|.+.++|.+|+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 55321100 001123456999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeeCCeEEEEEEecccccC
Q 019542 315 LDGQNLDGRAIRVNVAEDRQRR 336 (339)
Q Consensus 315 l~g~~l~gr~l~V~~a~~~~~~ 336 (339)
|||..|+|+.|+|.|+.+++.+
T Consensus 187 l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCSST
T ss_pred ccCCEeCCcEEEEEEecCCCCC
Confidence 9999999999999999987654
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=5.1e-36 Score=251.65 Aligned_cols=166 Identities=31% Similarity=0.584 Sum_probs=153.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
+.++|||+|||+++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999 4678999999999876
Q ss_pred CCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 019542 238 PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 317 (339)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g 317 (339)
+... ..+..+|||+|||+.+++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|+. ++|
T Consensus 80 ~~~~--------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 80 PRDE--------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp CHHH--------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred chhh--------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 5432 2234589999999999999999999999999999999998899999999999999999999998 899
Q ss_pred CeeCCeEEEEEEecccc
Q 019542 318 QNLDGRAIRVNVAEDRQ 334 (339)
Q Consensus 318 ~~l~gr~l~V~~a~~~~ 334 (339)
..++|+.|+|.||.++.
T Consensus 151 ~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp ECSSSSCEEEEECCCCC
T ss_pred EEeCCeEEEEeecCCCC
Confidence 99999999999998863
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=9.9e-34 Score=239.14 Aligned_cols=166 Identities=24% Similarity=0.399 Sum_probs=149.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCC--CcccEEEEEeccHHHHHHHHHHhCCcccC---Cceee
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETD--RSRGFGFVTMSTVEEAEKAVEMFHRYDID---GRLLT 232 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g--~~kg~afV~f~~~e~a~~Al~~~~~~~l~---gr~l~ 232 (339)
+.++|||+|||+++++++|+++|++||.|..++++++..+| +++|||||+|.+.++|.+|+..+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999999887 89999999999999999999999998775 67777
Q ss_pred eeccCCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHH
Q 019542 233 VNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 312 (339)
Q Consensus 233 V~~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al 312 (339)
+.++...... ..+.++|||+|||+.+++++|+++|++||.|..+++++++ +|+++|||||+|.+.++|.+|+
T Consensus 82 ~~~~~~~~~~-------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 82 MKPADSEKNN-------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp EEECGGGCCS-------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHH
T ss_pred Eccccccccc-------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHH
Confidence 7776544332 2245589999999999999999999999999999999995 6999999999999999999999
Q ss_pred HHhCCCeeC---CeEEEEEEec
Q 019542 313 AALDGQNLD---GRAIRVNVAE 331 (339)
Q Consensus 313 ~~l~g~~l~---gr~l~V~~a~ 331 (339)
..|||..+. |+.|+|.||.
T Consensus 154 ~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 154 KAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHTTSCCCTTCSSCCEEEECC
T ss_pred HHhcCCcccCCCCCCeEEEecC
Confidence 999998775 4999999984
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.5e-33 Score=243.01 Aligned_cols=173 Identities=22% Similarity=0.472 Sum_probs=151.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc----C-------CeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCccc
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKA----G-------TVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI 226 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~----G-------~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l 226 (339)
..++|||+|||+++++++|+++|++| | .|..+.+ ++++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 5555554 566999999999999999999 7899999
Q ss_pred CCceeeeeccCCCCCCCCC------------CCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCc
Q 019542 227 DGRLLTVNKAAPRGTQPER------------APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRS 294 (339)
Q Consensus 227 ~gr~l~V~~a~~~~~~~~~------------~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~ 294 (339)
.|+.|+|.++......... ......+.++|||+|||+.+++++|+++|++||.|..+++++++.+|.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 9999999998765432211 1111245689999999999999999999999999999999999889999
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecccccCC
Q 019542 295 RGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337 (339)
Q Consensus 295 kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~~~~s 337 (339)
+|||||+|.+.++|.+|+..|||..|+|+.|+|.|+.++.+++
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 198 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA 198 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCC
Confidence 9999999999999999999999999999999999999887753
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.8e-33 Score=235.99 Aligned_cols=159 Identities=23% Similarity=0.488 Sum_probs=144.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc----C-------CeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCccc
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKA----G-------TVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI 226 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~----G-------~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l 226 (339)
+.++|||+|||+++++++|+++|++| | .|..+++. +++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45899999999999999999999999 6 66666653 55899999999999999999 7899999
Q ss_pred CCceeeeeccCCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHH
Q 019542 227 DGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 306 (339)
Q Consensus 227 ~gr~l~V~~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e 306 (339)
.|+.|+|.++...... ...++|||+|||+.+++++|+++|++||.|..+++++++.+|+++|||||+|.+.+
T Consensus 76 ~g~~i~v~~~~~~~~~--------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 147 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL--------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 147 (172)
T ss_dssp TTEECEEECCSSCCCC--------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTT
T ss_pred cCceeeecCCcccCCC--------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHH
Confidence 9999999987654432 22458999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 307 ELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 307 ~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+|.+|+..|||..++|+.|+|.||.
T Consensus 148 ~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 148 VTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999973
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=6.8e-34 Score=240.72 Aligned_cols=167 Identities=20% Similarity=0.403 Sum_probs=147.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.+...++|||+|||+++++++|+++|..||.+.. .++.+..+|+++|||||+|.+.++|.+|++ +++..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4556789999999999999999999999997665 334455678999999999999999999995 89999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 019542 235 KAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 314 (339)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~ 314 (339)
++...... ...+.++|||+|||+.+++++|+++|++||.|..+ ..+|.++|||||+|.+.++|.+|+..
T Consensus 87 ~~~~~~~~------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 87 KPKGRDSK------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp CCCCSSCS------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred cCCCcccc------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 98765432 22345699999999999999999999999988766 46799999999999999999999999
Q ss_pred hCCCeeCCeEEEEEEecccc
Q 019542 315 LDGQNLDGRAIRVNVAEDRQ 334 (339)
Q Consensus 315 l~g~~l~gr~l~V~~a~~~~ 334 (339)
|||..|+|+.|+|.||.+++
T Consensus 156 l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HTEEEETTEEEEEEECSSCC
T ss_pred hCCCEECCeEEEEEecCCCC
Confidence 99999999999999998874
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.5e-32 Score=250.46 Aligned_cols=172 Identities=22% Similarity=0.322 Sum_probs=159.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..++|||+|||+++++++|+++|++||.|..++++.+..+|+++|||||+|.+.++|.+|+..+++..++|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCCceEEecCCCccc-cHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 019542 238 PRGTQPERAPRVFEPGFRIYVGNLPWEV-DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD 316 (339)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~-tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~ 316 (339)
+...... ..+.++|||+|||+.+ ++++|+++|+.||.|..++|++++ +|+++|||||+|.+.++|.+|+..||
T Consensus 174 ~~~~~~~-----~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 174 AGQLTPA-----LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp GGGCCTT-----TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCcc-----cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 6654322 2345699999999995 999999999999999999999985 79999999999999999999999999
Q ss_pred CCeeCCeEEEEEEeccccc
Q 019542 317 GQNLDGRAIRVNVAEDRQR 335 (339)
Q Consensus 317 g~~l~gr~l~V~~a~~~~~ 335 (339)
|..++|+.|+|.|+.++..
T Consensus 248 g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp TCEETTEECEEEECCSSSC
T ss_pred CCccCCeEEEEEEecCCCc
Confidence 9999999999999987764
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.5e-32 Score=251.47 Aligned_cols=174 Identities=18% Similarity=0.308 Sum_probs=148.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAG-TVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G-~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
..++|||+|||+++++++|+++|++|| .|..++++.+.. |+++|||||+|.+.++|.+|+..+++..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 468999999999999999999999999 999999988776 889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCceEEecCCCcc-ccHHHHHHHHhccCceEEEEEeeeCC-CCCcceEEEEEeCCHHHHHHHHHH
Q 019542 237 APRGTQPERAPRVFEPGFRIYVGNLPWE-VDNARLEQVFSEHGKVVNARVVYDRE-TGRSRGFGFVTMSSETELNDAIAA 314 (339)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~tee~L~~~F~~~G~V~~v~i~~d~~-~~~~kg~afV~F~~~e~A~~Al~~ 314 (339)
.+....... .....+.++|||+|||+. +++++|+++|+.||.|..++|+++.. +|.++|||||+|.+.++|.+|+ .
T Consensus 195 ~~~~~~~~~-~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 195 NPLEKSKRT-DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp CCC----------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred CCCcccccc-cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 876543322 123445679999999999 99999999999999999999999866 5999999999999999999999 9
Q ss_pred hCCCeeCCeEEEEEEecccc
Q 019542 315 LDGQNLDGRAIRVNVAEDRQ 334 (339)
Q Consensus 315 l~g~~l~gr~l~V~~a~~~~ 334 (339)
|||..|+|+.|+|.|+.+++
T Consensus 273 l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 273 MNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp GTTEEETTEEEEEEECCCCC
T ss_pred hcCCEECCcEEEEEEecCCC
Confidence 99999999999999999875
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=8.6e-32 Score=234.21 Aligned_cols=166 Identities=16% Similarity=0.250 Sum_probs=142.9
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 158 EDAKLFVGNLP-YDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 158 ~~~~vfVgnLp-~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
+.++|||+||| +.+++++|+++|++||.|.+|+++++ .+|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56899999999 89999999999999999999999753 3799999999999999999999999999999999988
Q ss_pred CCCCCCCCC------------------C-----------CCCCCCCceEEecCCCccccHHHHHHHHhccCce--EEEEE
Q 019542 237 APRGTQPER------------------A-----------PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV--VNARV 285 (339)
Q Consensus 237 ~~~~~~~~~------------------~-----------~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V--~~v~i 285 (339)
......+.. . .....++.+|||+|||+.+++++|+++|++||.| ..+++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 643221100 0 0012456789999999999999999999999999 89998
Q ss_pred eeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe----EEEEEEe
Q 019542 286 VYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGR----AIRVNVA 330 (339)
Q Consensus 286 ~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr----~l~V~~a 330 (339)
+.+. +.++|||||+|.+.++|.+|+..|||..|.|+ .+.|.||
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8774 56679999999999999999999999999887 6777776
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.98 E-value=3.5e-31 Score=241.22 Aligned_cols=168 Identities=20% Similarity=0.334 Sum_probs=147.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCcee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLA----MLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLL 231 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~----~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l 231 (339)
..+.++|||+|||+++++++|+ ++|++||.|..|++.+ +|+++|||||+|.+.++|.+|+..+|+..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999977 8999999999998875 68899999999999999999999999999999999
Q ss_pred eeeccCCCCCCCC-------------------------------------------------------------------
Q 019542 232 TVNKAAPRGTQPE------------------------------------------------------------------- 244 (339)
Q Consensus 232 ~V~~a~~~~~~~~------------------------------------------------------------------- 244 (339)
+|.++........
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 9998865432000
Q ss_pred ------------------------------------CCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeee
Q 019542 245 ------------------------------------RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYD 288 (339)
Q Consensus 245 ------------------------------------~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d 288 (339)
.......++++|||+|||+.+++++|+++|+.||.|..++|+.+
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC
Confidence 00012234578999999999999999999999999999999865
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEEEec
Q 019542 289 RETGRSRGFGFVTMSSETELNDAIAALDGQNLD-GRAIRVNVAE 331 (339)
Q Consensus 289 ~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~-gr~l~V~~a~ 331 (339)
+ +|||||+|.+.++|.+|+..|||..|. |+.|+|.|++
T Consensus 243 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 243 R-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3 689999999999999999999999999 9999999986
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.98 E-value=2.9e-31 Score=234.89 Aligned_cols=169 Identities=22% Similarity=0.386 Sum_probs=147.7
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 155 EPPEDAKLFVGNLPY-DVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~-~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
..++.++|||+|||+ ++++++|+++|++||.|..|+++++. +|||||+|.+.++|.+|+..+++..+.|+.|+|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999998754 789999999999999999999999999999999
Q ss_pred eccCCCCCCCCCC---------------------------CCCCCCCceEEecCCCccccHHHHHHHHhccC-ceEEEEE
Q 019542 234 NKAAPRGTQPERA---------------------------PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG-KVVNARV 285 (339)
Q Consensus 234 ~~a~~~~~~~~~~---------------------------~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G-~V~~v~i 285 (339)
.++........+. .....+.++|||+|||+.+++++|+++|++|| .|..+++
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence 9887553211110 01123468999999999999999999999999 9999999
Q ss_pred eeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEEEeccc
Q 019542 286 VYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD-GRAIRVNVAEDR 333 (339)
Q Consensus 286 ~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~-gr~l~V~~a~~~ 333 (339)
+.+ ++|||||+|.+.++|.+|+..|||..++ |+.|+|.|++++
T Consensus 185 ~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 185 FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 643 3789999999999999999999999999 999999999875
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=6.4e-31 Score=239.71 Aligned_cols=157 Identities=27% Similarity=0.429 Sum_probs=147.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
+.++|||+|||+++++++|+++|+.|| |..+.+ ++++|||||+|.+.++|.+|+..+++..+.|+.|+|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 568999999999999999999999999 888887 5679999999999999999999999999999999999753
Q ss_pred CCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 019542 238 PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 317 (339)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g 317 (339)
. .++|||+|||+.+++++|+++|+.||.|..+++++++.+|+++|||||+|.+.++|.+|+..|+|
T Consensus 94 ~--------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~ 159 (284)
T 3smz_A 94 T--------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 159 (284)
T ss_dssp C--------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred C--------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 2 24899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeCCeEEEEEEeccccc
Q 019542 318 QNLDGRAIRVNVAEDRQR 335 (339)
Q Consensus 318 ~~l~gr~l~V~~a~~~~~ 335 (339)
..++|+.|+|.|+.++..
T Consensus 160 ~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 160 KPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp CEETTEECEEEECCGGGC
T ss_pred CEeCCcEEEEEECCCCCC
Confidence 999999999999987664
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=2.7e-31 Score=229.37 Aligned_cols=165 Identities=22% Similarity=0.395 Sum_probs=145.2
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 159 DAKLFVGNLPY-DVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 159 ~~~vfVgnLp~-~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
.++|||+|||+ ++++++|+++|++||.|..|+++.+. +|||||+|.+.++|.+|+..+++..+.|+.|+|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998654 7899999999999999999999999999999999887
Q ss_pred CCCCCCCC---------------------------CCCCCCCCceEEecCCCccccHHHHHHHHhccC-ceEEEEEeeeC
Q 019542 238 PRGTQPER---------------------------APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG-KVVNARVVYDR 289 (339)
Q Consensus 238 ~~~~~~~~---------------------------~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G-~V~~v~i~~d~ 289 (339)
.......+ ......+.++|||+|||+.+++++|+++|++|| .|..+++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 55321111 001134578999999999999999999999999 9999999654
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEEEeccc
Q 019542 290 ETGRSRGFGFVTMSSETELNDAIAALDGQNLD-GRAIRVNVAEDR 333 (339)
Q Consensus 290 ~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~-gr~l~V~~a~~~ 333 (339)
.+|||||+|.+.++|.+|+..|||..++ |+.|+|.|++++
T Consensus 157 ----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp ----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred ----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3799999999999999999999999999 999999999865
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=4.9e-31 Score=241.40 Aligned_cols=164 Identities=15% Similarity=0.277 Sum_probs=140.4
Q ss_pred cCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceee
Q 019542 153 FVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232 (339)
Q Consensus 153 ~~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~ 232 (339)
.......++|||+|||+++++++|+++|+.||.|..|+++.+..+ ++|||||+|.+.++|.+|+. +++..+.|+.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 334567899999999999999999999999999999999987753 48999999999999999996 799999999999
Q ss_pred eeccCCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccC-ceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHH
Q 019542 233 VNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDA 311 (339)
Q Consensus 233 V~~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G-~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~A 311 (339)
|.++. .++|||+|||+.+++++|+++|+.|| .|..+++++++. |.++|||||+|.+.++|.+|
T Consensus 112 v~~~~---------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A 175 (292)
T 2ghp_A 112 VSHLT---------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYC 175 (292)
T ss_dssp EEECC---------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHH
T ss_pred EEECC---------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHH
Confidence 99862 34899999999999999999999999 999999999865 88999999999999999999
Q ss_pred HHHhCCCeeCCeEEEEEEeccccc
Q 019542 312 IAALDGQNLDGRAIRVNVAEDRQR 335 (339)
Q Consensus 312 l~~l~g~~l~gr~l~V~~a~~~~~ 335 (339)
+..|||..+.|+.|+|.|+.++.+
T Consensus 176 ~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 176 VEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp HHHHTTCEETTEECEEEECCCC--
T ss_pred HHHhCCCEeCCcEEEEEECCCCcc
Confidence 999999999999999999987654
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.7e-30 Score=234.42 Aligned_cols=158 Identities=34% Similarity=0.450 Sum_probs=144.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
....++|||+|||+++|+++|+++|++||.|..|++. +++|||||+|.+.++|.+|+..+++..+.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 3456799999999999999999999999999999985 3589999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 019542 236 AAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315 (339)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l 315 (339)
+.+ +++|||+|||+.+++++|+.+|+.||.|..|.|+++ .+|+++|||||+|.+.++|.+|+..|
T Consensus 93 a~~--------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 93 ATH--------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp CCC--------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccc--------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 864 348999999999999999999999999999999999 68999999999999999999999999
Q ss_pred CC-CeeC---CeEEEEEEecccc
Q 019542 316 DG-QNLD---GRAIRVNVAEDRQ 334 (339)
Q Consensus 316 ~g-~~l~---gr~l~V~~a~~~~ 334 (339)
|+ ..+. ||.|.|.++.+..
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEE
T ss_pred cCCeEEecCCCceEEEeeccccC
Confidence 55 4444 9999999997654
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=1.2e-24 Score=181.22 Aligned_cols=147 Identities=27% Similarity=0.348 Sum_probs=116.5
Q ss_pred EEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCC-----CCCCCCCCCCCCCCceEEecCCC
Q 019542 188 IAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR-----GTQPERAPRVFEPGFRIYVGNLP 262 (339)
Q Consensus 188 ~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~-----~~~~~~~~~~~~~~~~l~V~nLp 262 (339)
.+.++.+.. +++|||||+|.+.++|++|+..+++....+..+.+...... ............+.++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 355666654 68999999999999999999887754333333333222111 00111112223446799999999
Q ss_pred ccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecccccC
Q 019542 263 WEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336 (339)
Q Consensus 263 ~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~~~~ 336 (339)
+.+++++|+++|+.||.|..++|++++.+|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.|++++..+
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 99999999999999999999999999989999999999999999999999999999999999999999877554
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.90 E-value=2.3e-23 Score=172.00 Aligned_cols=132 Identities=25% Similarity=0.376 Sum_probs=115.5
Q ss_pred CCcccEEEEEeccHHHHHHHHHHh-CCcccCCceeeeeccCCCCC--------CCCCCCCCCCCCceEEecCCCccccHH
Q 019542 198 DRSRGFGFVTMSTVEEAEKAVEMF-HRYDIDGRLLTVNKAAPRGT--------QPERAPRVFEPGFRIYVGNLPWEVDNA 268 (339)
Q Consensus 198 g~~kg~afV~f~~~e~a~~Al~~~-~~~~l~gr~l~V~~a~~~~~--------~~~~~~~~~~~~~~l~V~nLp~~~tee 268 (339)
...+|+++|+|.+.++|++|+..+ |+..+.| .+++.++..... ..........+.++|||+|||+.++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467999999999999999999999 9999999 999998865321 111223344567899999999999999
Q ss_pred HHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccccc
Q 019542 269 RLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 335 (339)
Q Consensus 269 ~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~~~ 335 (339)
+|+++|+.||.|..|+|+++ ++|||||+|.+.++|.+|+..|||..|.|+.|+|.|++++++
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~r 150 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 150 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCCC
Confidence 99999999999999999876 589999999999999999999999999999999999998764
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=5.3e-23 Score=162.15 Aligned_cols=109 Identities=23% Similarity=0.356 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
...+|||+|||+++++++|+++|++||.|..|+|+++. +.++|||||+|.+.++|.+|+..|++..|+|+.|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999875 4579999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCceEEecCCCccccHH
Q 019542 238 PRGTQPERAPRVFEPGFRIYVGNLPWEVDNA 268 (339)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee 268 (339)
++..............++|||+|||+.+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CCCC---------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCcccc
Confidence 7766554444444555689999999999886
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=3.9e-22 Score=152.87 Aligned_cols=83 Identities=30% Similarity=0.556 Sum_probs=79.3
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
.-.+++|||+|||+.+|+++|+++|++||.|..++|++++.+|+++|||||+|.+.++|.+|+..|||..|+||.|+|.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 019542 330 AED 332 (339)
Q Consensus 330 a~~ 332 (339)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 25
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-21 Score=147.97 Aligned_cols=84 Identities=19% Similarity=0.383 Sum_probs=78.5
Q ss_pred ceEEecCCCccccHHHHHHHHhccC-ceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhC-CCeeCCeEEEEEEec
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD-GQNLDGRAIRVNVAE 331 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G-~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~-g~~l~gr~l~V~~a~ 331 (339)
++|||+|||+.+|+++|+++|++|| .|..|+|++++.+|+++|||||+|.+.++|.+|+..++ +..++||.|+|.||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 4899999999999999999999999 89999999999999999999999999999999999774 567999999999999
Q ss_pred ccccCC
Q 019542 332 DRQRRS 337 (339)
Q Consensus 332 ~~~~~s 337 (339)
+++++.
T Consensus 82 ~~~~~~ 87 (91)
T 2lxi_A 82 PKPKIN 87 (91)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 988754
No 26
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=2.8e-21 Score=156.60 Aligned_cols=127 Identities=28% Similarity=0.359 Sum_probs=84.1
Q ss_pred cEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCceE
Q 019542 202 GFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 281 (339)
Q Consensus 202 g~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~ 281 (339)
-++|++|.+...+..|+..+++....|+.- +.+. ..+....+.++|||+|||+.+++++|+++|+.||.|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~--------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYG--------RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp -------------------------------CCSC--------CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcC--------CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 367888889999999999888766666542 1111 1122334567999999999999999999999999999
Q ss_pred EEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecccccCC
Q 019542 282 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337 (339)
Q Consensus 282 ~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~~~~s 337 (339)
.|+|++++.+++++|||||+|.+.++|.+|+..|||..|.|+.|+|.|++++.++.
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 99999998899999999999999999999999999999999999999998776653
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=146.56 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=79.2
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+.++|||+|||+.+++++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccc
Q 019542 332 DRQ 334 (339)
Q Consensus 332 ~~~ 334 (339)
...
T Consensus 85 ~~~ 87 (110)
T 3s8s_A 85 KGQ 87 (110)
T ss_dssp TTH
T ss_pred CCc
Confidence 554
No 28
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=3.2e-20 Score=137.12 Aligned_cols=82 Identities=34% Similarity=0.731 Sum_probs=79.2
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccc
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~ 333 (339)
++|||+|||+.+++++|+++|+.||.|..+.+++++.+|+++|||||+|.+.++|.+|+..|||..++|+.|+|.|++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 019542 334 QR 335 (339)
Q Consensus 334 ~~ 335 (339)
++
T Consensus 82 ~~ 83 (83)
T 3md1_A 82 EH 83 (83)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 29
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=138.46 Aligned_cols=83 Identities=37% Similarity=0.671 Sum_probs=77.3
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+.++|||+|||+.+++++|+++|+.||.|..+++++++.+|+++|||||+|.+.++|.+|+..|||..++|+.|+|.|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45699999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred ccc
Q 019542 332 DRQ 334 (339)
Q Consensus 332 ~~~ 334 (339)
+++
T Consensus 85 ~kp 87 (87)
T 3bs9_A 85 RKP 87 (87)
T ss_dssp ---
T ss_pred CCC
Confidence 874
No 30
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.83 E-value=3.2e-20 Score=155.56 Aligned_cols=130 Identities=19% Similarity=0.340 Sum_probs=81.4
Q ss_pred EEeccHHHHHHHHHHhCCcccC--CceeeeeccCCCC------------CCCCCCCCCCCCCceEEecCCCccccHHHHH
Q 019542 206 VTMSTVEEAEKAVEMFHRYDID--GRLLTVNKAAPRG------------TQPERAPRVFEPGFRIYVGNLPWEVDNARLE 271 (339)
Q Consensus 206 V~f~~~e~a~~Al~~~~~~~l~--gr~l~V~~a~~~~------------~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~ 271 (339)
.+|.+.+++..|+..+++.... |+.+++....... ......+....++++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6788888998888888776554 6666665432211 0011223334556799999999999999999
Q ss_pred HHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccccc
Q 019542 272 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 335 (339)
Q Consensus 272 ~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~~~ 335 (339)
.+|+.||.|..|.|++++.+|.++|||||+|.+.++|.+||..|||..|.|+.|+|.|+.+++.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999986654
No 31
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-20 Score=142.88 Aligned_cols=87 Identities=26% Similarity=0.412 Sum_probs=82.3
Q ss_pred CCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 249 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 249 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
...++++|||+|||+.+++++|+.+|+.||.|..|.|++++.+|+++|||||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeccccc
Q 019542 329 VAEDRQR 335 (339)
Q Consensus 329 ~a~~~~~ 335 (339)
|+.+++.
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9988764
No 32
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=3.8e-20 Score=141.76 Aligned_cols=81 Identities=30% Similarity=0.558 Sum_probs=77.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
.+.+|||+|||+++|+++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.+|.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred C
Q 019542 238 P 238 (339)
Q Consensus 238 ~ 238 (339)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=7.3e-21 Score=144.44 Aligned_cols=79 Identities=27% Similarity=0.415 Sum_probs=74.7
Q ss_pred ceEEecCCCccccHHHHHHHHhccCc--eEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCC----eeCCeEEEE
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGK--VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ----NLDGRAIRV 327 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~--V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~----~l~gr~l~V 327 (339)
.+|||+|||+.+|+++|+++|++||. |..|++++|+.+|+++|||||+|.+.++|.+|++.|||. .|+||.|+|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 48999999999999999999999995 679999999999999999999999999999999999997 489999999
Q ss_pred EEecc
Q 019542 328 NVAED 332 (339)
Q Consensus 328 ~~a~~ 332 (339)
+||++
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99975
No 34
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.7e-20 Score=140.90 Aligned_cols=88 Identities=24% Similarity=0.405 Sum_probs=83.1
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.||.|..|.|++++.+|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCC
Q 019542 330 AEDRQRRS 337 (339)
Q Consensus 330 a~~~~~~s 337 (339)
+.++.++.
T Consensus 92 a~~~~~~~ 99 (103)
T 2cq0_A 92 AKPSTNSG 99 (103)
T ss_dssp SSCCCCSC
T ss_pred CCCCCCCC
Confidence 99887654
No 35
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6e-20 Score=139.28 Aligned_cols=86 Identities=33% Similarity=0.596 Sum_probs=81.8
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
++++|||+|||+.+++++|+++|++||.|..+++++++.+++++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC
Q 019542 332 DRQRRS 337 (339)
Q Consensus 332 ~~~~~s 337 (339)
++....
T Consensus 84 ~~~~~~ 89 (95)
T 2dnz_A 84 ERLDGG 89 (95)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887654
No 36
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=138.30 Aligned_cols=86 Identities=22% Similarity=0.537 Sum_probs=80.9
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.||.|..++|++++ +|+++|||||+|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
+++++++
T Consensus 93 a~~~~~~ 99 (100)
T 2do4_A 93 SNSGPSS 99 (100)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 9988764
No 37
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=1.2e-19 Score=142.67 Aligned_cols=87 Identities=26% Similarity=0.484 Sum_probs=81.8
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34557999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
++++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9877654
No 38
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=1.8e-20 Score=143.80 Aligned_cols=83 Identities=31% Similarity=0.446 Sum_probs=79.7
Q ss_pred CceEEecCCCc------cccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC-eEE
Q 019542 253 GFRIYVGNLPW------EVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG-RAI 325 (339)
Q Consensus 253 ~~~l~V~nLp~------~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~g-r~l 325 (339)
.++|||+|||+ .+++++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..|||..+.| |.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 46899999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEeccccc
Q 019542 326 RVNVAEDRQR 335 (339)
Q Consensus 326 ~V~~a~~~~~ 335 (339)
+|.++.++.+
T Consensus 86 ~V~~a~~~~~ 95 (100)
T 3ns6_A 86 FLYTMKDVER 95 (100)
T ss_dssp EEEESHHHHH
T ss_pred EEEECchhhh
Confidence 9999988765
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=8e-20 Score=139.01 Aligned_cols=84 Identities=24% Similarity=0.571 Sum_probs=80.2
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
|.++|||+|||+.+++++|+++|+.||.|..++|++++.+|+++|||||+|.+.++|.+|+..|||..++|+.|+|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 019542 332 DRQR 335 (339)
Q Consensus 332 ~~~~ 335 (339)
+++.
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8764
No 40
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=2.1e-19 Score=141.26 Aligned_cols=88 Identities=34% Similarity=0.601 Sum_probs=82.4
Q ss_pred CCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 249 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 249 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
...+.++|||+|||+.+++++|+.+|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34566799999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecccccC
Q 019542 329 VAEDRQRR 336 (339)
Q Consensus 329 ~a~~~~~~ 336 (339)
|+.+++..
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99877653
No 41
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=138.80 Aligned_cols=86 Identities=28% Similarity=0.416 Sum_probs=81.5
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+.++|||+|||+.+++++|+++|+.||.|..++|++++.+++++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cccccC
Q 019542 331 EDRQRR 336 (339)
Q Consensus 331 ~~~~~~ 336 (339)
.+++.+
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987764
No 42
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=138.35 Aligned_cols=86 Identities=30% Similarity=0.627 Sum_probs=80.8
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+. |||..|.|+.|+|.|+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 345699999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cccccCC
Q 019542 331 EDRQRRS 337 (339)
Q Consensus 331 ~~~~~~s 337 (339)
.++..++
T Consensus 87 ~~~~~~~ 93 (99)
T 2dgs_A 87 EPRDSKS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCcccC
Confidence 8876543
No 43
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1.1e-19 Score=134.84 Aligned_cols=81 Identities=35% Similarity=0.551 Sum_probs=77.5
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+.++|||+|||+.+++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+..|||..++|+.|+|.||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 019542 331 E 331 (339)
Q Consensus 331 ~ 331 (339)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 44
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=1.7e-20 Score=141.15 Aligned_cols=84 Identities=23% Similarity=0.478 Sum_probs=73.2
Q ss_pred ceEEecCCCccccHHHHHHHHhccC--ceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHG--KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G--~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
.+|||+|||+.+++++|+++|+.|| .|..++|++++.+|+++|||||+|.+.++|.+|+..|||..+.||.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred ccccCC
Q 019542 332 DRQRRS 337 (339)
Q Consensus 332 ~~~~~s 337 (339)
+.+.+.
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 876543
No 45
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=140.07 Aligned_cols=87 Identities=36% Similarity=0.529 Sum_probs=82.3
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
+.++.+.
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9887764
No 46
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=135.86 Aligned_cols=83 Identities=33% Similarity=0.528 Sum_probs=79.2
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+|+..|||..+.|+.|+|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 019542 330 AED 332 (339)
Q Consensus 330 a~~ 332 (339)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 47
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=140.31 Aligned_cols=88 Identities=26% Similarity=0.508 Sum_probs=82.5
Q ss_pred CCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhC------CCeeCC
Q 019542 249 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD------GQNLDG 322 (339)
Q Consensus 249 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~------g~~l~g 322 (339)
...+.++|||+|||+.+++++|+.+|..||.|..|+|++++.+|+++|||||+|.+.++|.+|+..|| |..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34456799999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eEEEEEEecccccC
Q 019542 323 RAIRVNVAEDRQRR 336 (339)
Q Consensus 323 r~l~V~~a~~~~~~ 336 (339)
+.|+|.|+.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999887654
No 48
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=9.2e-20 Score=140.47 Aligned_cols=87 Identities=33% Similarity=0.536 Sum_probs=81.7
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.||.|..+.|++++.+++++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
++++.+.
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9876554
No 49
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=1.4e-19 Score=141.08 Aligned_cols=88 Identities=23% Similarity=0.406 Sum_probs=82.7
Q ss_pred CCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 249 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 249 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
...+.++|||+|||+.+++++|+.+|+.||.|..+.|++++.+|+++|||||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccC
Q 019542 329 VAEDRQRR 336 (339)
Q Consensus 329 ~a~~~~~~ 336 (339)
|+.+++.+
T Consensus 102 ~a~~~~~~ 109 (110)
T 1oo0_B 102 WCFVKGPK 109 (110)
T ss_dssp ESEESSCC
T ss_pred EcccCCCC
Confidence 99887654
No 50
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.8e-20 Score=139.25 Aligned_cols=85 Identities=32% Similarity=0.542 Sum_probs=80.9
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEE-EEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNA-RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v-~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
++++|||+|||+.+++++|+.+|+.||.|..+ +|++++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45699999999999999999999999999999 99999899999999999999999999999999999999999999999
Q ss_pred cccccC
Q 019542 331 EDRQRR 336 (339)
Q Consensus 331 ~~~~~~ 336 (339)
.++.++
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 877654
No 51
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=2.9e-19 Score=138.07 Aligned_cols=87 Identities=25% Similarity=0.361 Sum_probs=80.6
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC---eEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG---RAIR 326 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~g---r~l~ 326 (339)
..+.++|||+|||+.+++++|+.+|+.||.|..|+|++++ +|+++|||||+|.+.++|.+|+..|||..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3456799999999999999999999999999999999997 79999999999999999999999999999988 9999
Q ss_pred EEEecccccCC
Q 019542 327 VNVAEDRQRRS 337 (339)
Q Consensus 327 V~~a~~~~~~s 337 (339)
|.|+++++.+.
T Consensus 91 V~~a~~~~~~~ 101 (105)
T 2dnh_A 91 VKFADTDKESG 101 (105)
T ss_dssp EEESCSSCCCS
T ss_pred EEECccCcccC
Confidence 99998776543
No 52
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=138.47 Aligned_cols=85 Identities=24% Similarity=0.461 Sum_probs=79.7
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCC---CCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRE---TGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~---~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
+.++|||+|||+.+++++|+++|+.||.|..|+|++++. +++++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 456899999999999999999999999999999999876 66999999999999999999999999999999999999
Q ss_pred EecccccC
Q 019542 329 VAEDRQRR 336 (339)
Q Consensus 329 ~a~~~~~~ 336 (339)
|++++.+.
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99877664
No 53
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=139.83 Aligned_cols=86 Identities=33% Similarity=0.516 Sum_probs=81.5
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q 019542 331 EDRQRR 336 (339)
Q Consensus 331 ~~~~~~ 336 (339)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887655
No 54
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=138.84 Aligned_cols=87 Identities=21% Similarity=0.411 Sum_probs=82.5
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceE-EEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE----EE
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVV-NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA----IR 326 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~-~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~----l~ 326 (339)
+.++|||+|||+.+++++|+++|++||.|. .++|++++.+|+++|||||+|.+.++|.+|+..|||..+.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 456999999999999999999999999999 9999999999999999999999999999999999999999999 99
Q ss_pred EEEecccccCCC
Q 019542 327 VNVAEDRQRRSS 338 (339)
Q Consensus 327 V~~a~~~~~~s~ 338 (339)
|.|+++..+.++
T Consensus 88 v~~a~~~~~~sG 99 (99)
T 2div_A 88 LNYATYSGPSSG 99 (99)
T ss_dssp EEETTCCSSSCC
T ss_pred EeecCCCCCCCC
Confidence 999998877664
No 55
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=139.53 Aligned_cols=87 Identities=41% Similarity=0.701 Sum_probs=81.6
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+.++|||+|||+.+++++|+++|+.||.|..++|++++.+++++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCC
Q 019542 331 EDRQRRS 337 (339)
Q Consensus 331 ~~~~~~s 337 (339)
+++...+
T Consensus 90 ~~~~~~~ 96 (102)
T 1x5s_A 90 GKSSDNR 96 (102)
T ss_dssp ECCCCCC
T ss_pred CCCCCCC
Confidence 8776543
No 56
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=139.36 Aligned_cols=86 Identities=31% Similarity=0.626 Sum_probs=81.3
Q ss_pred CCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 249 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 249 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
...+.++|||+|||+.+++++|+++|+.||.|..++|++++.+|+++|||||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eecccc
Q 019542 329 VAEDRQ 334 (339)
Q Consensus 329 ~a~~~~ 334 (339)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998764
No 57
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1.8e-19 Score=141.79 Aligned_cols=81 Identities=30% Similarity=0.532 Sum_probs=75.7
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
.++|||+|||+.+++++|+++|+.||.|..|+|++++ +.++|||||+|.+.++|.+|+..|||..|+|+.|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3489999999999999999999999999999999985 55899999999999999999999999999999999999987
Q ss_pred ccc
Q 019542 333 RQR 335 (339)
Q Consensus 333 ~~~ 335 (339)
+..
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 58
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=3.6e-19 Score=137.16 Aligned_cols=85 Identities=32% Similarity=0.671 Sum_probs=79.8
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.|| |..|+|++++.+|+++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34567999999999999999999999997 999999999999999999999999999999999 7999999999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
+.++.+.
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9887664
No 59
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=134.95 Aligned_cols=82 Identities=29% Similarity=0.551 Sum_probs=78.0
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|++||.|..+++++++.+++++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 019542 330 AE 331 (339)
Q Consensus 330 a~ 331 (339)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 60
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=138.23 Aligned_cols=87 Identities=26% Similarity=0.491 Sum_probs=81.4
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeee-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCeEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYD-RETGRSRGFGFVTMSSETELNDAIAAL-DGQNLDGRAIRV 327 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d-~~~~~~kg~afV~F~~~e~A~~Al~~l-~g~~l~gr~l~V 327 (339)
..+.++|||+|||+.+++++|+++|+.||.|..|+|+++ +.+++++|||||+|.+.++|.+|+..| ||..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 345679999999999999999999999999999999999 789999999999999999999999999 999999999999
Q ss_pred EEecccccC
Q 019542 328 NVAEDRQRR 336 (339)
Q Consensus 328 ~~a~~~~~~ 336 (339)
.|+.++...
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999877654
No 61
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=136.65 Aligned_cols=82 Identities=26% Similarity=0.387 Sum_probs=78.1
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEE--------EEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVN--------ARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD 321 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~--------v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~ 321 (339)
..+.++|||+|||+.+++++|+++|+.||.|.. +++++++.+|+++|||||+|.+.++|.+|+..|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 445679999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CeEEEEEEec
Q 019542 322 GRAIRVNVAE 331 (339)
Q Consensus 322 gr~l~V~~a~ 331 (339)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999984
No 62
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=135.67 Aligned_cols=85 Identities=21% Similarity=0.316 Sum_probs=78.7
Q ss_pred CCCceEEecCCCccccHHHHH----HHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 019542 251 EPGFRIYVGNLPWEVDNARLE----QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 326 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~----~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~ 326 (339)
..+++|||+|||+.+++++|+ ++|++||.|..|+|++++.+ +|||||+|.+.++|.+|+..|||..+.||.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345799999999999999999 99999999999999988655 89999999999999999999999999999999
Q ss_pred EEEecccccCCC
Q 019542 327 VNVAEDRQRRSS 338 (339)
Q Consensus 327 V~~a~~~~~~s~ 338 (339)
|.|+++++.+++
T Consensus 84 V~~a~~~~~~~~ 95 (96)
T 2dgx_A 84 VSLATGASGPSS 95 (96)
T ss_dssp EEECCCSSCCCC
T ss_pred EEEcCCCCCCCC
Confidence 999998887653
No 63
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=139.13 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
+++.++|||+|||+++++++|+++|++||.|..++|++++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 019542 236 AAPR 239 (339)
Q Consensus 236 a~~~ 239 (339)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8644
No 64
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.5e-19 Score=136.57 Aligned_cols=85 Identities=33% Similarity=0.591 Sum_probs=79.6
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.||.|..|+|+++ +|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345679999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
+.++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9877654
No 65
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=2.4e-19 Score=138.84 Aligned_cols=88 Identities=28% Similarity=0.479 Sum_probs=81.9
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee---CCeEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL---DGRAIR 326 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l---~gr~l~ 326 (339)
..+.++|||+|||+.+++++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..|||..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred EEEecccccCC
Q 019542 327 VNVAEDRQRRS 337 (339)
Q Consensus 327 V~~a~~~~~~s 337 (339)
|.|+.++.++.
T Consensus 90 v~~a~~~~~~~ 100 (106)
T 2dgp_A 90 VKPADSESRGG 100 (106)
T ss_dssp EEECCCCSCCC
T ss_pred EEECCcccccC
Confidence 99998777653
No 66
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=7.5e-20 Score=137.87 Aligned_cols=83 Identities=20% Similarity=0.410 Sum_probs=76.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHh-CCcccCCceeeeecc
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAG-TVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF-HRYDIDGRLLTVNKA 236 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G-~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~-~~~~l~gr~l~V~~a 236 (339)
+.+|||+|||+++|+++|+++|++|| .|..|++++++.+|+++|||||+|.+.++|.+|+..+ ++..++||+|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999876 566799999999999
Q ss_pred CCCCC
Q 019542 237 APRGT 241 (339)
Q Consensus 237 ~~~~~ 241 (339)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 67
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.6e-19 Score=139.48 Aligned_cols=87 Identities=24% Similarity=0.370 Sum_probs=81.7
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceE--------EEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV--------NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD 321 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~--------~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~ 321 (339)
..+.++|||+|||+.+++++|+++|+.||.|. .|+|++++.+|+++|||||+|.+.++|.+|+..|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34567999999999999999999999999999 6999999999999999999999999999999999999999
Q ss_pred CeEEEEEEecccccC
Q 019542 322 GRAIRVNVAEDRQRR 336 (339)
Q Consensus 322 gr~l~V~~a~~~~~~ 336 (339)
|+.|+|.|++++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999887754
No 68
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=4.8e-19 Score=133.43 Aligned_cols=86 Identities=30% Similarity=0.515 Sum_probs=79.8
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+.++|||+|||+.+++++|+++|+.||.|..++|.++ +|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35569999999999999999999999999999999874 7899999999999999999999999999999999999999
Q ss_pred cccccCCC
Q 019542 331 EDRQRRSS 338 (339)
Q Consensus 331 ~~~~~~s~ 338 (339)
+++..+++
T Consensus 84 ~~~~~~~~ 91 (92)
T 2dgv_A 84 RNASGPSS 91 (92)
T ss_dssp SCCSSCCC
T ss_pred CCCCCCCC
Confidence 98876643
No 69
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.3e-19 Score=136.45 Aligned_cols=85 Identities=26% Similarity=0.567 Sum_probs=79.5
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCC-CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRET-GRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~-~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
..+.++|||+|||+.+++++|+++|+.|| |..|+|++++.+ |+++|||||+|.+.++|.+|+ .|||..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34567999999999999999999999999 999999999887 999999999999999999999 899999999999999
Q ss_pred EecccccC
Q 019542 329 VAEDRQRR 336 (339)
Q Consensus 329 ~a~~~~~~ 336 (339)
++.++..+
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99887654
No 70
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=132.45 Aligned_cols=83 Identities=22% Similarity=0.414 Sum_probs=77.7
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCC-cceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGR-SRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~-~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
.++|||+|||+.+++++|+++|+.||.|..+.+++++.++. ++|||||+|.+.++|.+|+..|||..++|+.|+|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 45899999999999999999999999999999999987766 89999999999999999999999999999999999997
Q ss_pred cccc
Q 019542 332 DRQR 335 (339)
Q Consensus 332 ~~~~ 335 (339)
+...
T Consensus 84 ~~~~ 87 (88)
T 4a8x_A 84 APWP 87 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 71
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=4.3e-19 Score=140.13 Aligned_cols=82 Identities=27% Similarity=0.509 Sum_probs=77.8
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|++||.|..++|++++.+|+++|||||+|.+.++|.+|+..|||..|+|+.|+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 019542 330 AE 331 (339)
Q Consensus 330 a~ 331 (339)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 72
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=3.2e-19 Score=143.28 Aligned_cols=86 Identities=31% Similarity=0.531 Sum_probs=81.4
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..|||..|+|+.|+|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccc
Q 019542 330 AEDRQR 335 (339)
Q Consensus 330 a~~~~~ 335 (339)
+.+++.
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 987654
No 73
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-18 Score=133.20 Aligned_cols=86 Identities=30% Similarity=0.590 Sum_probs=78.9
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++. .++|||||+|.+.++|.+|+..|||..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567999999999999999999999999999999998853 4899999999999999999999999999999999999
Q ss_pred ecccccCC
Q 019542 330 AEDRQRRS 337 (339)
Q Consensus 330 a~~~~~~s 337 (339)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 99877653
No 74
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=141.66 Aligned_cols=88 Identities=33% Similarity=0.550 Sum_probs=82.7
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+.+|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCC
Q 019542 330 AEDRQRRS 337 (339)
Q Consensus 330 a~~~~~~s 337 (339)
++++.++.
T Consensus 119 a~~~~~~~ 126 (139)
T 1u6f_A 119 AASGHQRP 126 (139)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 99877654
No 75
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=5.8e-19 Score=132.08 Aligned_cols=80 Identities=28% Similarity=0.526 Sum_probs=76.8
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccc
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~ 333 (339)
++|||+|||+.+++++|+++|+.||.|..+++++++.+|+++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+++++
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 58999999999999999999999999999999999989999999999999999999999 89999999999999999875
Q ss_pred c
Q 019542 334 Q 334 (339)
Q Consensus 334 ~ 334 (339)
.
T Consensus 86 ~ 86 (89)
T 3ucg_A 86 R 86 (89)
T ss_dssp S
T ss_pred C
Confidence 3
No 76
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=5.4e-19 Score=141.23 Aligned_cols=88 Identities=26% Similarity=0.404 Sum_probs=82.2
Q ss_pred CCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 249 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 249 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
...+.++|||+|||+.+++++|+.+|+.||.|..|.|++++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34456799999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecccccC
Q 019542 329 VAEDRQRR 336 (339)
Q Consensus 329 ~a~~~~~~ 336 (339)
|+.++..+
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99876654
No 77
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-18 Score=132.82 Aligned_cols=85 Identities=24% Similarity=0.424 Sum_probs=77.8
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++. .++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34567999999999999999999999999999999998853 4689999999999999999999999999999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
++++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9877654
No 78
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.2e-19 Score=134.89 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=79.0
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
...++|||+|||+.+++++|+++|..||.|..+.+++++.+|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 019542 331 EDRQ 334 (339)
Q Consensus 331 ~~~~ 334 (339)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7653
No 79
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.1e-18 Score=130.17 Aligned_cols=79 Identities=33% Similarity=0.675 Sum_probs=74.8
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+.++|||+|||+.+++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|+. +++..++|+.|+|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 345699999999999999999999999999999999999999999999999999999999997 6889999999999986
No 80
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.6e-19 Score=136.13 Aligned_cols=86 Identities=30% Similarity=0.544 Sum_probs=80.8
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+.+|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+.. ++..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9877654
No 81
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=5.5e-19 Score=139.25 Aligned_cols=84 Identities=30% Similarity=0.595 Sum_probs=79.3
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+.++|||+|||+.+++++|+++|+.||.|..|.|++++ +|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.|++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34699999999999999999999999999999999997 89999999999999999999999999999999999999998
Q ss_pred ccccC
Q 019542 332 DRQRR 336 (339)
Q Consensus 332 ~~~~~ 336 (339)
++...
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 77654
No 82
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.78 E-value=1e-19 Score=174.89 Aligned_cols=85 Identities=24% Similarity=0.559 Sum_probs=80.4
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+.++|||+|||+.+|+++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 019542 331 EDRQR 335 (339)
Q Consensus 331 ~~~~~ 335 (339)
.++..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87543
No 83
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=137.13 Aligned_cols=85 Identities=35% Similarity=0.564 Sum_probs=79.2
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..+++ .|.|+.|+|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred eccccc
Q 019542 330 AEDRQR 335 (339)
Q Consensus 330 a~~~~~ 335 (339)
+..+.+
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 976543
No 84
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=1.6e-18 Score=134.40 Aligned_cols=81 Identities=32% Similarity=0.570 Sum_probs=77.5
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.||.|..+.|++++ +|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4566799999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ec
Q 019542 330 AE 331 (339)
Q Consensus 330 a~ 331 (339)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 85
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=7.1e-19 Score=134.96 Aligned_cols=99 Identities=22% Similarity=0.236 Sum_probs=84.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCC
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 239 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~ 239 (339)
++|||+|||+++++++|+++|++||.|..+.+..+ ++|||||+|.+.++|.+|+..+++..+.|+.|+|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 7899999999999999999999999999999999999877
Q ss_pred CCCCCCCC--CCCCCCceEEecCCCc
Q 019542 240 GTQPERAP--RVFEPGFRIYVGNLPW 263 (339)
Q Consensus 240 ~~~~~~~~--~~~~~~~~l~V~nLp~ 263 (339)
........ .......+||||||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCCC
Confidence 64432222 2223356899999973
No 86
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=9.9e-19 Score=132.50 Aligned_cols=81 Identities=33% Similarity=0.547 Sum_probs=76.6
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+.++|||+|||+.+++++|+++|+.||.|..++|++++. |+++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4557999999999999999999999999999999999975 999999999999999999999999999999999999998
Q ss_pred cc
Q 019542 331 ED 332 (339)
Q Consensus 331 ~~ 332 (339)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 87
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-18 Score=134.50 Aligned_cols=85 Identities=35% Similarity=0.515 Sum_probs=78.7
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|..||.|..|+|++++ +|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456799999999999999999999999999999999996 599999999999999999999999999999999999999
Q ss_pred eccccc
Q 019542 330 AEDRQR 335 (339)
Q Consensus 330 a~~~~~ 335 (339)
+.....
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 975443
No 88
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.3e-18 Score=129.61 Aligned_cols=88 Identities=27% Similarity=0.549 Sum_probs=82.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
+++.++|||+|||+++++++|+++|++||.|..+++..++.+++++|||||+|.+.++|.+|+..+|+..+.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 019542 236 AAPRGTQP 243 (339)
Q Consensus 236 a~~~~~~~ 243 (339)
+.++....
T Consensus 82 a~~~~~~~ 89 (95)
T 2dnz_A 82 VTERLDGG 89 (95)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 98776543
No 89
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=129.95 Aligned_cols=83 Identities=27% Similarity=0.441 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
++.++|||+|||+++++++|+++|++||.|..+++..++.+|+++|||||+|.+.++|.+|+..+|+..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCC
Q 019542 237 APR 239 (339)
Q Consensus 237 ~~~ 239 (339)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 90
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-18 Score=132.00 Aligned_cols=85 Identities=27% Similarity=0.495 Sum_probs=79.0
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+.+|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|+. ++..|+|+.|+|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3456799999999999999999999999999999999999999999999999999999999999 58899999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9887654
No 91
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=3.4e-18 Score=136.23 Aligned_cols=87 Identities=30% Similarity=0.505 Sum_probs=81.4
Q ss_pred CCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 249 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 249 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
...++++|||+|||+.+++++|+++|+.||.|..|+|++++ +|+++|||||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred EecccccC
Q 019542 329 VAEDRQRR 336 (339)
Q Consensus 329 ~a~~~~~~ 336 (339)
||.+....
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99876554
No 92
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.5e-19 Score=135.88 Aligned_cols=85 Identities=32% Similarity=0.585 Sum_probs=79.5
Q ss_pred CCCceEEecCCCccccHHHHHHHHhc-cCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe-eCCeEEEEE
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSE-HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN-LDGRAIRVN 328 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~-~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~-l~gr~l~V~ 328 (339)
.+.++|||+|||+.+++++|+++|+. ||.|..|+|++++ +|+++|||||+|.+.++|.+|+..|||.. +.|+.|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34569999999999999999999999 9999999999998 99999999999999999999999999999 999999999
Q ss_pred EecccccC
Q 019542 329 VAEDRQRR 336 (339)
Q Consensus 329 ~a~~~~~~ 336 (339)
|+.++..+
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99766543
No 93
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-19 Score=144.48 Aligned_cols=86 Identities=23% Similarity=0.351 Sum_probs=80.4
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEE--EEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCC----eeCCe
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVN--ARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ----NLDGR 323 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~--v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~----~l~gr 323 (339)
..+.++|||+|||+.+++++|+++|++||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..|||. .+.||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 455679999999999999999999999999977 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEEecccccC
Q 019542 324 AIRVNVAEDRQRR 336 (339)
Q Consensus 324 ~l~V~~a~~~~~~ 336 (339)
.|+|.|++++.+.
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999887553
No 94
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=7.4e-19 Score=138.13 Aligned_cols=106 Identities=21% Similarity=0.364 Sum_probs=95.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
++++.++|||+|||+++++++|+.+|++||.|..++++.+ +.++|||||+|.+.++|.+|+..+||..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999864 5569999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCceEEecCCCccccHHHHHHHHhccCc
Q 019542 235 KAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGK 279 (339)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~ 279 (339)
++.+.... ++++...++++|..+|++||-
T Consensus 81 ~a~~~~~~----------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF----------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT----------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh----------------hhhhHhHhHHHHHHHHHHhCC
Confidence 98754432 578889999999999999984
No 95
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4e-19 Score=136.95 Aligned_cols=79 Identities=15% Similarity=0.267 Sum_probs=75.1
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+.++|||+|||+.+|+++|+++|++||.|..|+|++++. |+++|||||+|.+.++|.+|+. ++|..++|+.|+|.|+.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 346899999999999999999999999999999999977 9999999999999999999999 89999999999999986
Q ss_pred c
Q 019542 332 D 332 (339)
Q Consensus 332 ~ 332 (339)
+
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 96
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-19 Score=136.87 Aligned_cols=83 Identities=39% Similarity=0.750 Sum_probs=79.5
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
.++|||+|||+.+++++|+++|+.||.|..+++++++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccc
Q 019542 333 RQR 335 (339)
Q Consensus 333 ~~~ 335 (339)
+..
T Consensus 88 ~~~ 90 (104)
T 1p1t_A 88 EKN 90 (104)
T ss_dssp TTH
T ss_pred ccc
Confidence 654
No 97
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=3.5e-19 Score=133.83 Aligned_cols=83 Identities=19% Similarity=0.370 Sum_probs=72.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccC--CeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAG--TVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G--~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
.+|||+|||+++++++|+++|++|| .|..++++.++.+|+++|||||+|.+.++|.+|+..+|+..+.||.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 019542 238 PRGTQ 242 (339)
Q Consensus 238 ~~~~~ 242 (339)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 98
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=8.3e-19 Score=145.46 Aligned_cols=81 Identities=28% Similarity=0.532 Sum_probs=77.6
Q ss_pred CceEEecCCCccccHHHHHHHHhccC--ceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHG--KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G--~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.++|||+|||+.+++++|+++|+.|| .|..|+|++|+.+|+++|||||+|.+.++|.+|+..|||..|+|+.|+|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 46999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 019542 331 EDR 333 (339)
Q Consensus 331 ~~~ 333 (339)
.++
T Consensus 135 ~~~ 137 (156)
T 3n9u_C 135 TRQ 137 (156)
T ss_dssp CHH
T ss_pred CCC
Confidence 764
No 99
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=129.62 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=77.5
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
..++|||+|||+.+++++|+++|+.| .|..++|+++ .+|+++|||||+|.+.++|.+|+. |||..|+||.|+|.++.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 45699999999999999999999999 9999999999 789999999999999999999999 99999999999999998
Q ss_pred ccccC
Q 019542 332 DRQRR 336 (339)
Q Consensus 332 ~~~~~ 336 (339)
+++..
T Consensus 86 ~~~~s 90 (91)
T 2dgw_A 86 SGPSS 90 (91)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 88653
No 100
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=3.4e-19 Score=142.01 Aligned_cols=82 Identities=23% Similarity=0.491 Sum_probs=78.2
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
.++|||+|||+.+++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|+ .|||..|+|+.|+|.|+++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 469999999999999999999999999999999999999999999999999999999999 6999999999999999987
Q ss_pred ccc
Q 019542 333 RQR 335 (339)
Q Consensus 333 ~~~ 335 (339)
+..
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 101
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.77 E-value=2.2e-18 Score=142.89 Aligned_cols=88 Identities=24% Similarity=0.438 Sum_probs=82.3
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCC
Q 019542 330 AEDRQRRS 337 (339)
Q Consensus 330 a~~~~~~s 337 (339)
+.++.+..
T Consensus 116 a~~~~~~~ 123 (156)
T 1h2v_Z 116 DAGFKEGR 123 (156)
T ss_dssp ESCCCTTC
T ss_pred CCCCCCcC
Confidence 98766543
No 102
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-18 Score=130.36 Aligned_cols=88 Identities=34% Similarity=0.638 Sum_probs=81.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+++++++|+++|.+||.|..++++.++.+++++|||||+|.+.++|.+|+. +++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999 79999999999999
Q ss_pred ccCCCCCCC
Q 019542 235 KAAPRGTQP 243 (339)
Q Consensus 235 ~a~~~~~~~ 243 (339)
++.++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 998776543
No 103
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-18 Score=131.02 Aligned_cols=88 Identities=28% Similarity=0.389 Sum_probs=82.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
..+.++|||+|||+++++++|+++|++||.|..++++.+..+++++|||||+|.+.++|.+|+..+|+..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 019542 236 AAPRGTQP 243 (339)
Q Consensus 236 a~~~~~~~ 243 (339)
+.++....
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 98876543
No 104
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1e-18 Score=136.15 Aligned_cols=86 Identities=31% Similarity=0.577 Sum_probs=77.8
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|+..+ |..++|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345679999999999999999999999999999999999999999999999999999999999965 6999999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887654
No 105
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.9e-19 Score=139.00 Aligned_cols=82 Identities=29% Similarity=0.456 Sum_probs=78.3
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
.++|||+|||+.+++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|+.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 469999999999999999999999999999999999999999999999999999999999 8999999999999999987
Q ss_pred ccc
Q 019542 333 RQR 335 (339)
Q Consensus 333 ~~~ 335 (339)
+..
T Consensus 104 ~~~ 106 (114)
T 2cq4_A 104 EKN 106 (114)
T ss_dssp HHH
T ss_pred Ccc
Confidence 654
No 106
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=2.5e-18 Score=126.82 Aligned_cols=81 Identities=33% Similarity=0.566 Sum_probs=77.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCC
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 239 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~ 239 (339)
.+|||+|||+++++++|+++|++||.|..++++.+..+|+++|||||+|.+.++|.+|+..+|+..+.|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred C
Q 019542 240 G 240 (339)
Q Consensus 240 ~ 240 (339)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 107
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=4.2e-19 Score=134.68 Aligned_cols=81 Identities=20% Similarity=0.395 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCC--eeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCc----ccCCcee
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGT--VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRY----DIDGRLL 231 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~--i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~----~l~gr~l 231 (339)
.-.||||+|||+++|+++|+++|++||. |..|++++++.+|+++|||||+|.+.++|.+|++.+|+. .++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3469999999999999999999999995 678999999999999999999999999999999999986 4899999
Q ss_pred eeeccCC
Q 019542 232 TVNKAAP 238 (339)
Q Consensus 232 ~V~~a~~ 238 (339)
+|.+|..
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999864
No 108
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-18 Score=132.53 Aligned_cols=85 Identities=27% Similarity=0.454 Sum_probs=77.2
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345679999999999999999999999999999999643 66899999999999999999999999999999999999
Q ss_pred ecccccCC
Q 019542 330 AEDRQRRS 337 (339)
Q Consensus 330 a~~~~~~s 337 (339)
++++.++.
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4a_A 96 PRSGRGTG 103 (109)
T ss_dssp CCCCCCCC
T ss_pred cccCCCCC
Confidence 98877653
No 109
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.7e-19 Score=134.70 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=72.3
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCeEEEEEE
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG--QNLDGRAIRVNV 329 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g--~~l~gr~l~V~~ 329 (339)
+.++|||+|||+.+++++|+++|++||.|..|+|+++ ||||||+|.+.++|.+|+..|++ ..|.||.|+|.|
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4569999999999999999999999999999999865 79999999999999999998864 789999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
|+++...
T Consensus 89 A~~~~~~ 95 (105)
T 1sjq_A 89 SNHKELK 95 (105)
T ss_dssp CSSSSCC
T ss_pred cCCCCCC
Confidence 9887654
No 110
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=7.2e-18 Score=132.43 Aligned_cols=89 Identities=26% Similarity=0.460 Sum_probs=83.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+++++++|+++|.+||.|..|+++.++.+++++|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 019542 235 KAAPRGTQP 243 (339)
Q Consensus 235 ~a~~~~~~~ 243 (339)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 998776544
No 111
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=6.5e-18 Score=129.31 Aligned_cols=87 Identities=23% Similarity=0.414 Sum_probs=81.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
....+.++|||+|||+++++++|+++|.+||.|..+++..+. +|+++|||||+|.+.++|.+|+..+|+..+.|+.|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 019542 234 NKAAPRGT 241 (339)
Q Consensus 234 ~~a~~~~~ 241 (339)
.++.++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99987654
No 112
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=6.9e-19 Score=133.38 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=76.3
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+.++|||+|||+.+++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+..|||..|.||.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred c
Q 019542 332 D 332 (339)
Q Consensus 332 ~ 332 (339)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 113
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-19 Score=136.72 Aligned_cols=83 Identities=28% Similarity=0.581 Sum_probs=76.1
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDR-ETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~-~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
....++|||+|||+.+++++|+++|+.|| |..++|++++ .+|+++|||||+|.+.++|.+|+ .|||..|+|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34567999999999999999999999999 9999999998 68999999999999999999999 799999999999999
Q ss_pred Eecccc
Q 019542 329 VAEDRQ 334 (339)
Q Consensus 329 ~a~~~~ 334 (339)
++++++
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998875
No 114
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=4.9e-18 Score=133.46 Aligned_cols=89 Identities=28% Similarity=0.471 Sum_probs=82.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
..++.++|||+|||+++++++|+++|.+||.|..|+++.+..+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 019542 235 KAAPRGTQP 243 (339)
Q Consensus 235 ~a~~~~~~~ 243 (339)
++.++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 998776543
No 115
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-18 Score=131.71 Aligned_cols=88 Identities=25% Similarity=0.411 Sum_probs=82.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+++++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|+..+|+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 019542 235 KAAPRGTQ 242 (339)
Q Consensus 235 ~a~~~~~~ 242 (339)
++.++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99877654
No 116
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=133.29 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=72.2
Q ss_pred CCCCceEEecCCCc-cccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCC--eeCCeEEE
Q 019542 250 FEPGFRIYVGNLPW-EVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ--NLDGRAIR 326 (339)
Q Consensus 250 ~~~~~~l~V~nLp~-~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~--~l~gr~l~ 326 (339)
..+.++|||+|||+ .+++++|+.+|++||.|..|+|+++ +|||||+|.+.++|.+|+..||+. .|.||.|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34567999999999 9999999999999999999999765 689999999999999999999864 59999999
Q ss_pred EEEeccccc
Q 019542 327 VNVAEDRQR 335 (339)
Q Consensus 327 V~~a~~~~~ 335 (339)
|.||+.+++
T Consensus 86 V~~a~~~~~ 94 (102)
T 1x4d_A 86 VHLSQKYKR 94 (102)
T ss_dssp EEEECCCTT
T ss_pred EEECCCCCC
Confidence 999996554
No 117
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=131.73 Aligned_cols=89 Identities=28% Similarity=0.351 Sum_probs=82.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+++++++|+++|.+||.|..+.+..+..+++++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 019542 235 KAAPRGTQP 243 (339)
Q Consensus 235 ~a~~~~~~~ 243 (339)
++.......
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dnm_A 89 VARYGRRDL 97 (103)
T ss_dssp ECSSCCSCC
T ss_pred ECCcCCCCC
Confidence 998765443
No 118
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.8e-18 Score=131.65 Aligned_cols=89 Identities=27% Similarity=0.493 Sum_probs=83.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhC------CcccCC
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFH------RYDIDG 228 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~------~~~l~g 228 (339)
...+.++|||+|||+++++++|+.+|.+||.|..|+++++..+|+++|||||+|.+.++|.+|+..++ +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ceeeeeccCCCCCCC
Q 019542 229 RLLTVNKAAPRGTQP 243 (339)
Q Consensus 229 r~l~V~~a~~~~~~~ 243 (339)
+.|+|.++.++....
T Consensus 91 ~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAA 105 (111)
T ss_dssp CEEEEECCCCCCCCC
T ss_pred EEEEEEECCCCccCC
Confidence 999999998776544
No 119
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=137.32 Aligned_cols=84 Identities=33% Similarity=0.584 Sum_probs=79.6
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+.++|||+|||+.+++++|+++|..||.|..|+|++++.+|+++|||||+|.+.++|.+|+.. ++..|+|+.|+|.|+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 457999999999999999999999999999999999999999999999999999999999997 9999999999999998
Q ss_pred ccccC
Q 019542 332 DRQRR 336 (339)
Q Consensus 332 ~~~~~ 336 (339)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 87654
No 120
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=131.29 Aligned_cols=79 Identities=15% Similarity=0.141 Sum_probs=71.8
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe--eCCeEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN--LDGRAIRV 327 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~--l~gr~l~V 327 (339)
..|+.+|||+|||+.+++++|+++|++||.|.++++++ +||||||+|.+.++|.+|+..|+|.. +.||.|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34566999999999999999999999999999999974 38999999999999999999999875 78999999
Q ss_pred EEecccc
Q 019542 328 NVAEDRQ 334 (339)
Q Consensus 328 ~~a~~~~ 334 (339)
+|++.+.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998753
No 121
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2.8e-18 Score=130.36 Aligned_cols=84 Identities=23% Similarity=0.520 Sum_probs=79.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
++++|||+|||+++++++|+++|++||.|..+++..+..+|+++|||||+|.+.++|.+|+..+++..++|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 019542 238 PRGT 241 (339)
Q Consensus 238 ~~~~ 241 (339)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7653
No 122
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=5e-19 Score=128.13 Aligned_cols=75 Identities=29% Similarity=0.570 Sum_probs=72.6
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
+|||+|||+.+++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|+. +||..++|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 9999999999999986
No 123
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=130.73 Aligned_cols=88 Identities=35% Similarity=0.666 Sum_probs=82.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+++++++|+++|++||.|..++++.++.+++++|||||+|.+.++|.+|+..+|+..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 019542 235 KAAPRGTQ 242 (339)
Q Consensus 235 ~a~~~~~~ 242 (339)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876654
No 124
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-18 Score=129.02 Aligned_cols=85 Identities=28% Similarity=0.483 Sum_probs=80.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
..+++.++|||+|||+++++++|+++|++||.|..++++.++.+++++|||||+|.+.++|.+|+..+|+..+.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 019542 234 NKAAP 238 (339)
Q Consensus 234 ~~a~~ 238 (339)
.++..
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 98864
No 125
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=133.90 Aligned_cols=84 Identities=29% Similarity=0.414 Sum_probs=77.3
Q ss_pred CCCceEEecCCCccc------cHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe-
Q 019542 251 EPGFRIYVGNLPWEV------DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGR- 323 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~------tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr- 323 (339)
...++|||+|||+.+ ++++|+.+|++||.|..|+|+ +.+|+++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 345699999999999 889999999999999999988 46899999999999999999999999999999998
Q ss_pred EEEEEEecccccC
Q 019542 324 AIRVNVAEDRQRR 336 (339)
Q Consensus 324 ~l~V~~a~~~~~~ 336 (339)
.|+|.++.+..+.
T Consensus 91 ~l~V~~a~~~~k~ 103 (105)
T 2nlw_A 91 TFRVNLFTDFDKY 103 (105)
T ss_dssp EEEEECSCCCCCC
T ss_pred eEEEEEcchHhhh
Confidence 9999999877653
No 126
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.9e-18 Score=130.69 Aligned_cols=89 Identities=30% Similarity=0.472 Sum_probs=82.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
......++|||+|||+++++++|+++|++||.|..|+++.+..+++++|||||+|.+.++|.+|+..|++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 019542 234 NKAAPRGTQ 242 (339)
Q Consensus 234 ~~a~~~~~~ 242 (339)
.++.+....
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999876554
No 127
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=2.8e-18 Score=127.21 Aligned_cols=81 Identities=30% Similarity=0.488 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
.++.++|||+|||+++++++|+++|++||.|..++++.+..+++++|||||+|.+.++|.+|+..+|+..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 019542 236 A 236 (339)
Q Consensus 236 a 236 (339)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 6
No 128
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=134.45 Aligned_cols=84 Identities=14% Similarity=0.251 Sum_probs=77.7
Q ss_pred CCceEEecCCCccccHHHHH---HHHhccCceEEEEEeeeCCCC---CcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 019542 252 PGFRIYVGNLPWEVDNARLE---QVFSEHGKVVNARVVYDRETG---RSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 325 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~---~~F~~~G~V~~v~i~~d~~~~---~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l 325 (339)
+.++|||+|||+.+++++|+ ++|++||.|..++|++++.++ +++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 45689999999999999999 999999999999999887644 566999999999999999999999999999999
Q ss_pred EEEEeccccc
Q 019542 326 RVNVAEDRQR 335 (339)
Q Consensus 326 ~V~~a~~~~~ 335 (339)
+|.||.+++.
T Consensus 94 ~V~~a~~k~~ 103 (111)
T 2cpi_A 94 KASLGTTKYC 103 (111)
T ss_dssp EEESCCCCSC
T ss_pred EEEecccccc
Confidence 9999998874
No 129
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=9.5e-18 Score=129.29 Aligned_cols=88 Identities=25% Similarity=0.404 Sum_probs=81.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcc-cCCceee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEK-AGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYD-IDGRLLT 232 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~-~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~-l~gr~l~ 232 (339)
...+.++|||+|||+++++++|+++|.+ ||.|..++++.+. +|+++|||||+|.+.++|.+|+..+++.. +.|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred eeccCCCCCCC
Q 019542 233 VNKAAPRGTQP 243 (339)
Q Consensus 233 V~~a~~~~~~~ 243 (339)
|.++.++....
T Consensus 84 v~~a~~~~~~~ 94 (104)
T 2dhg_A 84 LSVAIPKASRV 94 (104)
T ss_dssp CCBCCCCCSCC
T ss_pred EEEccCCCcCC
Confidence 99997766543
No 130
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=130.66 Aligned_cols=84 Identities=21% Similarity=0.472 Sum_probs=76.4
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|++||.| +++++ .+++++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3456799999999999999999999999987 56666 6899999999999999999999999999999999999999
Q ss_pred ecccccCC
Q 019542 330 AEDRQRRS 337 (339)
Q Consensus 330 a~~~~~~s 337 (339)
+++++++.
T Consensus 88 a~~~~~~~ 95 (101)
T 2fc9_A 88 QGPRGSPN 95 (101)
T ss_dssp CSSCCCCC
T ss_pred cCCCCCCC
Confidence 98887654
No 131
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.8e-18 Score=127.32 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=69.7
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
...|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.|||..+.||.|+|.+|.+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 45899999999999999999999999999999854 699999999999999999999999999999999999953
No 132
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=134.54 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=78.6
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCc-eEEEEEe-eeCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeeCCeEEEE
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGK-VVNARVV-YDRETGRSRGFGFVTMSSETELNDAIAALD--GQNLDGRAIRV 327 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~-V~~v~i~-~d~~~~~~kg~afV~F~~~e~A~~Al~~l~--g~~l~gr~l~V 327 (339)
+.++|||+|||+.+++++|+++|..||. |..+.++ +++.+|+++|||||+|.+.++|.+|+..|| +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4569999999999999999999999998 9999998 788889999999999999999999999996 58999999999
Q ss_pred EEeccccc
Q 019542 328 NVAEDRQR 335 (339)
Q Consensus 328 ~~a~~~~~ 335 (339)
.|+.++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99988765
No 133
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=129.97 Aligned_cols=87 Identities=26% Similarity=0.433 Sum_probs=80.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCC---CCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRE---TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~---~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
++.++|||+|||+++++++|+++|++||.|..+++..+.. +++++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999998877 6699999999999999999999999999999999999
Q ss_pred eccCCCCCCC
Q 019542 234 NKAAPRGTQP 243 (339)
Q Consensus 234 ~~a~~~~~~~ 243 (339)
.++.++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998766543
No 134
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=130.27 Aligned_cols=87 Identities=21% Similarity=0.424 Sum_probs=81.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEE-EEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIA-EVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v-~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
.+.++|||+|||+++++++|+++|++||.|..+ +++.++.+|+++|||||+|.+.++|.+|+..+|+..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999989999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 019542 236 AAPRGTQP 243 (339)
Q Consensus 236 a~~~~~~~ 243 (339)
+.++....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98776543
No 135
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-18 Score=129.77 Aligned_cols=83 Identities=23% Similarity=0.376 Sum_probs=79.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE--------EEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcc
Q 019542 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEI--------AEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYD 225 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~--------v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~ 225 (339)
..+++..+|||+|||+++++++|+++|++||.|.. +++..++.+|+++|||||+|.+.++|.+|+..+|+..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45667899999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cCCceeeeecc
Q 019542 226 IDGRLLTVNKA 236 (339)
Q Consensus 226 l~gr~l~V~~a 236 (339)
+.|+.|+|.+|
T Consensus 88 ~~g~~l~V~~A 98 (99)
T 2la6_A 88 FSGNPIKVSFA 98 (99)
T ss_dssp SSSSBCEEEEC
T ss_pred eCCcEEEEEec
Confidence 99999999987
No 136
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.5e-18 Score=131.25 Aligned_cols=89 Identities=28% Similarity=0.455 Sum_probs=82.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+++++++|+++|++||.|..++++.++.+++++|||||+|.+.++|.+|+..+|+..|.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 019542 235 KAAPRGTQP 243 (339)
Q Consensus 235 ~a~~~~~~~ 243 (339)
++.++....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 998776544
No 137
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=7.8e-18 Score=130.89 Aligned_cols=86 Identities=31% Similarity=0.621 Sum_probs=80.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
..+..++|||+|||+++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|+..+++..+.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019542 235 KAAPRG 240 (339)
Q Consensus 235 ~a~~~~ 240 (339)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 987653
No 138
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.4e-18 Score=131.62 Aligned_cols=84 Identities=25% Similarity=0.351 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
.+.++|||+|||+++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.++|.+|+..+|+..+.|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 019542 237 APRG 240 (339)
Q Consensus 237 ~~~~ 240 (339)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7654
No 139
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-19 Score=132.50 Aligned_cols=80 Identities=20% Similarity=0.417 Sum_probs=76.0
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+.++|||+|||+.+++++|+++|+.||.|..++|++++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|+++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999888754
No 140
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=129.78 Aligned_cols=89 Identities=27% Similarity=0.459 Sum_probs=82.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEec-CCCCCcccEEEEEeccHHHHHHHHHHh-CCcccCCceee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYN-RETDRSRGFGFVTMSTVEEAEKAVEMF-HRYDIDGRLLT 232 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~-~~~g~~kg~afV~f~~~e~a~~Al~~~-~~~~l~gr~l~ 232 (339)
.....++|||+|||+++++++|+++|.+||.|..|+++.+ ..+++++|||||+|.+.++|.+|+..+ |+..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999988 788999999999999999999999999 99999999999
Q ss_pred eeccCCCCCCC
Q 019542 233 VNKAAPRGTQP 243 (339)
Q Consensus 233 V~~a~~~~~~~ 243 (339)
|.++.++....
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998776543
No 141
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=7e-18 Score=137.01 Aligned_cols=81 Identities=35% Similarity=0.536 Sum_probs=76.9
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|++||.|..++|++++.+|+++|||||+|.+.++|.+|+..|||..|+|+.|+|.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e
Q 019542 330 A 330 (339)
Q Consensus 330 a 330 (339)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 142
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=128.77 Aligned_cols=88 Identities=33% Similarity=0.441 Sum_probs=81.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+++++++|+++|.+||.|..++++.+ +|+++|||||+|.+.++|.+|+..+|+..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4456789999999999999999999999999999999987 79999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 019542 235 KAAPRGTQPE 244 (339)
Q Consensus 235 ~a~~~~~~~~ 244 (339)
++.++.....
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2d9p_A 89 LAQRKEERQS 98 (103)
T ss_dssp ECSSCCCCCC
T ss_pred EecccccCCC
Confidence 9988765443
No 143
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=1.4e-18 Score=133.29 Aligned_cols=81 Identities=28% Similarity=0.404 Sum_probs=77.5
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCC-ce
Q 019542 158 EDAKLFVGNLPY------DVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDG-RL 230 (339)
Q Consensus 158 ~~~~vfVgnLp~------~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~g-r~ 230 (339)
.+++|||+|||+ ++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|+..+|+..+.| |.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eeeeccCC
Q 019542 231 LTVNKAAP 238 (339)
Q Consensus 231 l~V~~a~~ 238 (339)
|+|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99998864
No 144
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=3.2e-19 Score=133.90 Aligned_cols=82 Identities=43% Similarity=0.785 Sum_probs=74.3
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccc
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~ 333 (339)
++|||+|||+.+++++|+++|+.||.|..+++++++.+|+++|||||+|.+.+ |.+|+..|||..++|+.|+|.+|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 48999999999999999999999999999999999999999999999999999 99999999999999999999999877
Q ss_pred ccC
Q 019542 334 QRR 336 (339)
Q Consensus 334 ~~~ 336 (339)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 145
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=8.8e-18 Score=129.31 Aligned_cols=87 Identities=21% Similarity=0.436 Sum_probs=80.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+++++++|+++|.+|| |..|+++++..+|+++|||||+|.+.++|.+|+ .+|+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445678999999999999999999999997 999999999999999999999999999999999 789999999999999
Q ss_pred ccCCCCCCC
Q 019542 235 KAAPRGTQP 243 (339)
Q Consensus 235 ~a~~~~~~~ 243 (339)
++.++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 998766543
No 146
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=1.6e-17 Score=128.16 Aligned_cols=87 Identities=28% Similarity=0.351 Sum_probs=80.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCC---ceee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDG---RLLT 232 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~g---r~l~ 232 (339)
.++.++|||+|||+++++++|+++|++||.|..++++.++ +|+++|||||+|.+.++|.+|+..||+..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999988 69999999999999999999999999999998 9999
Q ss_pred eeccCCCCCCC
Q 019542 233 VNKAAPRGTQP 243 (339)
Q Consensus 233 V~~a~~~~~~~ 243 (339)
|.++..+....
T Consensus 91 V~~a~~~~~~~ 101 (105)
T 2dnh_A 91 VKFADTDKESG 101 (105)
T ss_dssp EEESCSSCCCS
T ss_pred EEECccCcccC
Confidence 99998776543
No 147
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.8e-18 Score=127.60 Aligned_cols=83 Identities=22% Similarity=0.468 Sum_probs=78.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
..+++.++|||+|||+++++++|+++|++||.|..+++..++.+++++|||||+|.+.++|.+|+..+|+..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 019542 234 NKA 236 (339)
Q Consensus 234 ~~a 236 (339)
.++
T Consensus 91 ~~a 93 (94)
T 2e5h_A 91 SIA 93 (94)
T ss_dssp EEC
T ss_pred Eec
Confidence 986
No 148
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.7e-19 Score=127.73 Aligned_cols=76 Identities=33% Similarity=0.636 Sum_probs=73.4
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
++|||+|||+.+++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|+..++ ..++|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 379999999999999999999999999999999999899999999999999999999999888 9999999999987
No 149
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.5e-18 Score=133.13 Aligned_cols=85 Identities=31% Similarity=0.587 Sum_probs=78.0
Q ss_pred CCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 019542 248 RVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 327 (339)
Q Consensus 248 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V 327 (339)
....+.++|||+|||+.+++++|+++|++||.|..+++.+++ +.++|||||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 334556799999999999999999999999999999999884 458999999999999999999999999999999999
Q ss_pred EEecccc
Q 019542 328 NVAEDRQ 334 (339)
Q Consensus 328 ~~a~~~~ 334 (339)
.|++++.
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9998764
No 150
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=5.8e-18 Score=126.14 Aligned_cols=81 Identities=32% Similarity=0.576 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+++++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|.+|+.. ++..++|+.|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999976 8888999999998
Q ss_pred cc
Q 019542 235 KA 236 (339)
Q Consensus 235 ~a 236 (339)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 151
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=128.52 Aligned_cols=84 Identities=31% Similarity=0.543 Sum_probs=77.0
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.|+ .+.+++++.+++++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44567999999999999999999999774 678888888999999999999999999999999999999999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9987764
No 152
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=131.20 Aligned_cols=82 Identities=26% Similarity=0.534 Sum_probs=77.2
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee--------CC
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL--------DG 322 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l--------~g 322 (339)
.+.++|||+|||+.+++++|+.+|+.||.|..++|++++ +|+++|||||+|.+.++|.+|+..|||..+ .|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456799999999999999999999999999999999997 899999999999999999999999999999 68
Q ss_pred eEEEEEEeccc
Q 019542 323 RAIRVNVAEDR 333 (339)
Q Consensus 323 r~l~V~~a~~~ 333 (339)
+.|+|.|+.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999865
No 153
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=131.15 Aligned_cols=86 Identities=28% Similarity=0.497 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
....++|||+|||+++++++|+++|++||.|..|.+..+. +|+++|||||+|.+.++|.+|+..+++..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 019542 236 AAPRGTQ 242 (339)
Q Consensus 236 a~~~~~~ 242 (339)
+......
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9876544
No 154
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.9e-18 Score=130.02 Aligned_cols=88 Identities=32% Similarity=0.534 Sum_probs=82.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+++++++|+++|.+||.|..|+++.++.+++++|||||+|.+.++|.+|+.. ++..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 455678999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCCCCCC
Q 019542 235 KAAPRGTQP 243 (339)
Q Consensus 235 ~a~~~~~~~ 243 (339)
++.++...+
T Consensus 91 ~a~~~~~~~ 99 (105)
T 2dh8_A 91 PCTPRGMQP 99 (105)
T ss_dssp CSCCSSCCT
T ss_pred EccCCCCCC
Confidence 998776544
No 155
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=9.5e-18 Score=129.73 Aligned_cols=88 Identities=28% Similarity=0.419 Sum_probs=81.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCccc---CCcee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI---DGRLL 231 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l---~gr~l 231 (339)
...+.++|||+|||+++++++|+++|++||.|..|+++.++.+|+++|||||+|.+.++|.+|+..+|+..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 445678999999999999999999999999999999999999999999999999999999999999999887 89999
Q ss_pred eeeccCCCCCC
Q 019542 232 TVNKAAPRGTQ 242 (339)
Q Consensus 232 ~V~~a~~~~~~ 242 (339)
+|.++......
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999876554
No 156
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=128.12 Aligned_cols=81 Identities=16% Similarity=0.230 Sum_probs=72.7
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHh--CCCeeCCeEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL--DGQNLDGRAIRV 327 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l--~g~~l~gr~l~V 327 (339)
..+.++|||+|||+.+++++|+.+|++||.|..+.++++ ||||||+|.+.++|.+|+..| ++..+.||.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345679999999999999999999999999999988754 899999999999999999977 467899999999
Q ss_pred EEecccccC
Q 019542 328 NVAEDRQRR 336 (339)
Q Consensus 328 ~~a~~~~~~ 336 (339)
.|++.+.-.
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999877643
No 157
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-18 Score=136.30 Aligned_cols=87 Identities=23% Similarity=0.402 Sum_probs=75.9
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.||.|..+.+..+..+|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567999999999999999999999999995443333334789999999999999999999999999999999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
+.++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9877654
No 158
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4e-18 Score=131.33 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
....++|||+|||+++|+++|+++|++||.|..|+++++.. |+++|||||+|.+.++|.+|+. +++..++|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999987 9999999999999999999999 799999999999987
Q ss_pred cCC
Q 019542 236 AAP 238 (339)
Q Consensus 236 a~~ 238 (339)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 643
No 159
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-18 Score=132.35 Aligned_cols=84 Identities=17% Similarity=0.270 Sum_probs=76.8
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
...++|||+|||+.+++++|+++|+.||.| .|+|++++ +|+++|||||+|.+.++|.+||. +|+..|+||.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345699999999999999999999999955 99999997 89999999999999999999996 7999999999999999
Q ss_pred cccccCC
Q 019542 331 EDRQRRS 337 (339)
Q Consensus 331 ~~~~~~s 337 (339)
.+..+.+
T Consensus 90 ~~~~~~~ 96 (102)
T 1wez_A 90 STAGTSG 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8776654
No 160
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=7.8e-18 Score=135.14 Aligned_cols=88 Identities=27% Similarity=0.453 Sum_probs=82.5
Q ss_pred cCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceee
Q 019542 153 FVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232 (339)
Q Consensus 153 ~~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~ 232 (339)
...+++.++|||+|||+++++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|+..+++..|.|+.|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 019542 233 VNKAAPRG 240 (339)
Q Consensus 233 V~~a~~~~ 240 (339)
|.++.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99997764
No 161
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=7.2e-19 Score=134.95 Aligned_cols=85 Identities=28% Similarity=0.434 Sum_probs=78.6
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+.++|||+|||+.+++++|+++|+.||.|.. .+++++.+|+++|||||+|.+.++|.+|+. |||..|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35679999999999999999999999999988 677777889999999999999999999999 9999999999999999
Q ss_pred cccccCC
Q 019542 331 EDRQRRS 337 (339)
Q Consensus 331 ~~~~~~s 337 (339)
.++..+.
T Consensus 93 ~~~~~~~ 99 (101)
T 1fj7_A 93 KGRDGTR 99 (101)
T ss_dssp SCCCCSS
T ss_pred CCCCCCC
Confidence 9887664
No 162
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.7e-18 Score=128.30 Aligned_cols=85 Identities=25% Similarity=0.367 Sum_probs=80.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCee-EEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCce----
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVE-IAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRL---- 230 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~-~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~---- 230 (339)
..+.++|||+|||+++++++|+++|++||.|. .+++++++.+|+++|||||+|.+.++|.+|+..||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44678999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCC
Q 019542 231 LTVNKAAPRG 240 (339)
Q Consensus 231 l~V~~a~~~~ 240 (339)
|+|.++.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987654
No 163
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.6e-18 Score=129.90 Aligned_cols=81 Identities=11% Similarity=0.101 Sum_probs=72.2
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCC--eeCCeEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ--NLDGRAIRV 327 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~--~l~gr~l~V 327 (339)
..+.++|||+|||+.+++++|+++|++||.|..+.++++ ||||||+|.+.++|.+|+..|++. .+.|+.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345679999999999999999999999999999998753 799999999999999999988764 589999999
Q ss_pred EEecccccC
Q 019542 328 NVAEDRQRR 336 (339)
Q Consensus 328 ~~a~~~~~~ 336 (339)
.|++.+...
T Consensus 86 ~~a~~~~~~ 94 (104)
T 1wex_A 86 NYSTSKRIT 94 (104)
T ss_dssp EECSSSSCC
T ss_pred EEccCcccc
Confidence 999876543
No 164
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=131.05 Aligned_cols=89 Identities=26% Similarity=0.412 Sum_probs=82.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCee--------EEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCccc
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVE--------IAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI 226 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~--------~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l 226 (339)
.....++|||+|||+++++++|+++|.+||.|. .|+++.++.+|+++|||||+|.+.++|.+|+..||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 699999989999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCCCC
Q 019542 227 DGRLLTVNKAAPRGTQP 243 (339)
Q Consensus 227 ~gr~l~V~~a~~~~~~~ 243 (339)
.|+.|+|.++..+....
T Consensus 91 ~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp TTEECEEECSSCCCCST
T ss_pred CCCEEEEEECCCCCCCC
Confidence 99999999998776543
No 165
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-18 Score=134.38 Aligned_cols=82 Identities=17% Similarity=0.252 Sum_probs=76.9
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCce-EEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKV-VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V-~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
.+.++|||+|||+.+++++|+++|+.||.| ..|+|++++ +|+++|||||+|.+.++|.+||.. |+..|.||.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 345699999999999999999999999999 899999997 899999999999999999999996 99999999999999
Q ss_pred ecccc
Q 019542 330 AEDRQ 334 (339)
Q Consensus 330 a~~~~ 334 (339)
+.++.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97665
No 166
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=126.60 Aligned_cols=80 Identities=25% Similarity=0.377 Sum_probs=73.7
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC--CeEEEEE
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD--GRAIRVN 328 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~--gr~l~V~ 328 (339)
.+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|||..+. |+.|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34569999999999999999999999999999998643 789999999999999999999999999 9999999
Q ss_pred EecccccC
Q 019542 329 VAEDRQRR 336 (339)
Q Consensus 329 ~a~~~~~~ 336 (339)
|+++++++
T Consensus 89 ~a~~~~~~ 96 (97)
T 1why_A 89 FAKSGPSS 96 (97)
T ss_dssp ECCCCCCC
T ss_pred ECCCCCCC
Confidence 99988764
No 167
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=125.18 Aligned_cols=79 Identities=28% Similarity=0.596 Sum_probs=73.5
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+.++|||+|||+.+++++|+++|++||.|..+++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 456799999999999999999999999999999996 689999999999999999999999999999999999
Q ss_pred cccccCC
Q 019542 331 EDRQRRS 337 (339)
Q Consensus 331 ~~~~~~s 337 (339)
+++.+++
T Consensus 78 ~~~~~~~ 84 (90)
T 2dnq_A 78 KNKSKAS 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 8877653
No 168
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.9e-18 Score=129.38 Aligned_cols=82 Identities=22% Similarity=0.271 Sum_probs=76.2
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEE-EEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVN-ARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~-v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
...++|||+|||+.+++++|+++|..||.|.. ++|+++ .+|+++|||||+|.+.++|.+|+.. |+..|+||.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 44569999999999999999999999999997 889888 7899999999999999999999996 99999999999999
Q ss_pred ecccc
Q 019542 330 AEDRQ 334 (339)
Q Consensus 330 a~~~~ 334 (339)
+..+.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87654
No 169
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=7.3e-18 Score=131.33 Aligned_cols=86 Identities=22% Similarity=0.317 Sum_probs=80.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
..+.++|||+|||+++++++|+.+|++||.|..++++.+..+|+++|||||+|.+.++|.+|+..+++..+.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 019542 236 AAPRGT 241 (339)
Q Consensus 236 a~~~~~ 241 (339)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 876543
No 170
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.7e-18 Score=132.56 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=73.6
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCeEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG--QNLDGRAIRV 327 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g--~~l~gr~l~V 327 (339)
..++++|||+|||+.+++++|+++|++||.|..|+|+++ ||||||+|.+.++|.+|+..|++ ..|.|+.|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345679999999999999999999999999999999865 89999999999999999998874 6899999999
Q ss_pred EEecccccC
Q 019542 328 NVAEDRQRR 336 (339)
Q Consensus 328 ~~a~~~~~~ 336 (339)
.|++++.-.
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999887654
No 171
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=8.1e-18 Score=140.89 Aligned_cols=87 Identities=22% Similarity=0.320 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
..+.++|||+|||+.+++++|+.+|++||.|..|.++.+..+|.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 019542 236 AAPRGTQ 242 (339)
Q Consensus 236 a~~~~~~ 242 (339)
+..+...
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 9776543
No 172
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=1.1e-17 Score=124.97 Aligned_cols=80 Identities=20% Similarity=0.444 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
.++|||+|||+++++++|+++|++||.|..+++..+..+|+++|||||+|.+.++|.+|+ .+|+..+.|+.|+|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999999999999999999999999999 8899999999999999876
Q ss_pred C
Q 019542 239 R 239 (339)
Q Consensus 239 ~ 239 (339)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 173
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=7.4e-18 Score=134.68 Aligned_cols=83 Identities=18% Similarity=0.356 Sum_probs=74.5
Q ss_pred CCCCceEEecCCCccccHHHHH----HHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLE----QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 325 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~----~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l 325 (339)
..++++|||+|||+.+++++|+ .+|++||.|..|.+. .+++++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456799999999999999876 799999999998875 368899999999999999999999999999999999
Q ss_pred EEEEeccccc
Q 019542 326 RVNVAEDRQR 335 (339)
Q Consensus 326 ~V~~a~~~~~ 335 (339)
+|.||+.+..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987653
No 174
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=126.83 Aligned_cols=81 Identities=25% Similarity=0.444 Sum_probs=73.3
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
....++|||+|||+.+++++|+.+|+.||.|. ++++.+ +++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34457999999999999999999999999997 667654 6799999999999999999999999999999999999
Q ss_pred eccccc
Q 019542 330 AEDRQR 335 (339)
Q Consensus 330 a~~~~~ 335 (339)
++++++
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 998764
No 175
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.74 E-value=8.3e-18 Score=125.39 Aligned_cols=83 Identities=23% Similarity=0.439 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCC-cccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDR-SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~-~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
..++|||+|||+++++++|+++|++||.|..+.+..+..++. ++|||||+|.+.++|.+|+..+|+..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999888766 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 019542 237 APRG 240 (339)
Q Consensus 237 ~~~~ 240 (339)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6653
No 176
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=2.3e-17 Score=124.15 Aligned_cols=84 Identities=29% Similarity=0.469 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
.++.++|||+|||+++++++|+++|++||.|..+++.+ .+|+++|||||+|.+.++|.+|+..+++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999987 4789999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 019542 236 AAPRGT 241 (339)
Q Consensus 236 a~~~~~ 241 (339)
+.+...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 977654
No 177
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=128.27 Aligned_cols=87 Identities=20% Similarity=0.407 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCC-CCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRET-DRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~-g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
+..+.++|||+|||+++++++|+++|.+|| |..|+++.++.+ |+++|||||+|.+.++|.+|+ .+++..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345668999999999999999999999999 999999999988 999999999999999999999 88999999999999
Q ss_pred eccCCCCCCC
Q 019542 234 NKAAPRGTQP 243 (339)
Q Consensus 234 ~~a~~~~~~~ 243 (339)
.++.++....
T Consensus 89 ~~a~~~~~~~ 98 (104)
T 1wi8_A 89 DVADQAQDKD 98 (104)
T ss_dssp EECCCCCCCC
T ss_pred EEccCCCCCC
Confidence 9998776543
No 178
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-18 Score=137.21 Aligned_cols=84 Identities=25% Similarity=0.456 Sum_probs=77.3
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
....++|||+|||+.+++++|+.+|..||.|..+.++.+..+|+++|||||+|.+.++|.+||. |||..|+||.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456799999999999999999999999999987777777899999999999999999999999 999999999999999
Q ss_pred ecccc
Q 019542 330 AEDRQ 334 (339)
Q Consensus 330 a~~~~ 334 (339)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97653
No 179
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.2e-18 Score=126.33 Aligned_cols=82 Identities=18% Similarity=0.400 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
+.+.++|||+|||+++++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 019542 236 AA 237 (339)
Q Consensus 236 a~ 237 (339)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 180
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=7.3e-18 Score=133.22 Aligned_cols=81 Identities=26% Similarity=0.480 Sum_probs=75.8
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCc---eEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGK---VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 327 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~---V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V 327 (339)
...++|||+|||+.+++++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+||. +||..|+||.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 34569999999999999999999999999 89999999976 9999999999999999999999 9999999999999
Q ss_pred EEeccc
Q 019542 328 NVAEDR 333 (339)
Q Consensus 328 ~~a~~~ 333 (339)
.++..+
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 181
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=5.7e-18 Score=128.58 Aligned_cols=83 Identities=17% Similarity=0.433 Sum_probs=75.5
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+.++|||+|||+.+++++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 355799999999999999999999999988766 256899999999999999999999999999999999999999
Q ss_pred cccccCCC
Q 019542 331 EDRQRRSS 338 (339)
Q Consensus 331 ~~~~~~s~ 338 (339)
.++.+..+
T Consensus 89 ~~~~~~~G 96 (96)
T 1fjc_A 89 GEKGGTRG 96 (96)
T ss_dssp SSSCCCCC
T ss_pred CCCCCCCC
Confidence 98887653
No 182
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=126.06 Aligned_cols=83 Identities=29% Similarity=0.483 Sum_probs=77.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+++++++|+++|++||.|..+++..++. |+++|||||+|.+.++|.+|+..+|+..+.|+.|+|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 344568999999999999999999999999999999999886 9999999999999999999999999999999999999
Q ss_pred ccCC
Q 019542 235 KAAP 238 (339)
Q Consensus 235 ~a~~ 238 (339)
++..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8753
No 183
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=8e-18 Score=131.21 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=71.3
Q ss_pred CCceEEecCCCccccHHHHHHHHhccC-ceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G-~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+++|||+|||+.+++++|+++|+.|| .|..+.|.. +.++|||||+|.+.++|.+|+..|||..|+||.|+|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 346999999999999999999999999 899998853 357999999999999999999999999999999999999
Q ss_pred cccc
Q 019542 331 EDRQ 334 (339)
Q Consensus 331 ~~~~ 334 (339)
..++
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7654
No 184
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=127.73 Aligned_cols=79 Identities=28% Similarity=0.354 Sum_probs=73.4
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC-----eEE
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG-----RAI 325 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~g-----r~l 325 (339)
...++|||+|||+.+++++|+++|.+||.|..|.|+++ |||||+|.+.++|.+|+..|||..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 34579999999999999999999999999999999765 899999999999999999999999999 999
Q ss_pred EEEEecccccC
Q 019542 326 RVNVAEDRQRR 336 (339)
Q Consensus 326 ~V~~a~~~~~~ 336 (339)
+|.++.++.+.
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999887654
No 185
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.2e-17 Score=130.09 Aligned_cols=87 Identities=31% Similarity=0.489 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.....++|||+|||+++++++|+++|++||.|..|+++.+..+|+++|||||+|.+.++|.+|+..+ +..++|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3446789999999999999999999999999999999999999999999999999999999999985 589999999999
Q ss_pred ccCCCCCC
Q 019542 235 KAAPRGTQ 242 (339)
Q Consensus 235 ~a~~~~~~ 242 (339)
++.++...
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99876543
No 186
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=6.7e-18 Score=131.32 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=73.2
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
.++|||+|||+.+++++|+++|+.| .|..|+|++++. |+++|||||+|.+.++|.+|| .+|+..|+||.|+|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4699999999999999999999999 899999999965 999999999999999999999 5999999999999999865
Q ss_pred c
Q 019542 333 R 333 (339)
Q Consensus 333 ~ 333 (339)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 187
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=127.05 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhC--CcccCCceee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFH--RYDIDGRLLT 232 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~--~~~l~gr~l~ 232 (339)
.+++..+|||+|||+++++++|+++|++||.|..|+++++ ||||||+|.+.++|.+|+..++ +..|.||.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456789999999999999999999999999999999853 7999999999999999999876 4789999999
Q ss_pred eeccCCCCCCC
Q 019542 233 VNKAAPRGTQP 243 (339)
Q Consensus 233 V~~a~~~~~~~ 243 (339)
|.++..+....
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99998765543
No 188
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=127.79 Aligned_cols=82 Identities=29% Similarity=0.512 Sum_probs=75.0
Q ss_pred CCCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 249 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 249 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
...+.++|||+|||+.+++++|+.+|++||.|..+++.++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3455679999999999999999999999999999999743 7999999999999999999999999999999999
Q ss_pred EecccccC
Q 019542 329 VAEDRQRR 336 (339)
Q Consensus 329 ~a~~~~~~ 336 (339)
|++++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpj_A 85 FACHSASL 92 (99)
T ss_dssp ESSCCSCC
T ss_pred EcCCCCCC
Confidence 99887653
No 189
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=134.36 Aligned_cols=84 Identities=21% Similarity=0.382 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE--EEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCc----ccCCce
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEI--AEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRY----DIDGRL 230 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~--v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~----~l~gr~ 230 (339)
...++|||+|||+++++++|+++|.+||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..+|+. .+.||.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45689999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred eeeeccCCCCC
Q 019542 231 LTVNKAAPRGT 241 (339)
Q Consensus 231 l~V~~a~~~~~ 241 (339)
|+|.++.+...
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999977644
No 190
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=5.3e-17 Score=131.82 Aligned_cols=90 Identities=33% Similarity=0.555 Sum_probs=83.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.....++|||+|||+++++++|+++|+.||.|..|++++++.+|+++|||||+|.+.++|.+|+..+|+..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 019542 235 KAAPRGTQPE 244 (339)
Q Consensus 235 ~a~~~~~~~~ 244 (339)
++..+.....
T Consensus 118 ~a~~~~~~~~ 127 (139)
T 1u6f_A 118 LAASGHQRPG 127 (139)
T ss_dssp ESSCCCCCCC
T ss_pred ECCCCCCCCC
Confidence 9988765543
No 191
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6e-17 Score=124.56 Aligned_cols=87 Identities=28% Similarity=0.430 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+++++++|+++|.+||.|..|+++.++.+|+++|||||+|.+.++|.+|+. ++..++|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999 5778999999999
Q ss_pred ccCCCCCCC
Q 019542 235 KAAPRGTQP 243 (339)
Q Consensus 235 ~a~~~~~~~ 243 (339)
++.++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqg_A 89 LPNSKQSQD 97 (103)
T ss_dssp CCCTTCCCC
T ss_pred ecCCCCcCC
Confidence 998876543
No 192
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=1.9e-17 Score=129.01 Aligned_cols=97 Identities=25% Similarity=0.449 Sum_probs=81.2
Q ss_pred cCCceeeeeccCCCCCCCCCCCCCCCCCceEEecCCCcc-ccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCC
Q 019542 226 IDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWE-VDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS 304 (339)
Q Consensus 226 l~gr~l~V~~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~ 304 (339)
..|+.|+|..+....... ...+.++|||+|||+. +++++|+++|++||.|..|.| ++|||||+|.+
T Consensus 5 ~~g~~~~~~~s~~~~~~~-----~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~ 71 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKND-----PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSN 71 (110)
T ss_dssp CCSCCCCCCCCCSCCSCC-----CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSS
T ss_pred CCCcccccccCCCCCCCC-----CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECC
Confidence 456777777665433322 1233469999999999 999999999999999999998 48999999999
Q ss_pred HHHHHHHHHHhCCCeeCCeEEEEEEeccccc
Q 019542 305 ETELNDAIAALDGQNLDGRAIRVNVAEDRQR 335 (339)
Q Consensus 305 ~e~A~~Al~~l~g~~l~gr~l~V~~a~~~~~ 335 (339)
.++|.+|+..|||..|+|+.|+|.|++++..
T Consensus 72 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 72 ERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp SHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999999999999985443
No 193
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.5e-17 Score=124.79 Aligned_cols=88 Identities=31% Similarity=0.544 Sum_probs=79.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
......++|||+|||+++++++|+++|.+||.|..|+++.+.. .++|||||+|.+.++|.+|+..+++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999998764 38999999999999999999999999999999999
Q ss_pred eccCCCCCCC
Q 019542 234 NKAAPRGTQP 243 (339)
Q Consensus 234 ~~a~~~~~~~ 243 (339)
.++.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cq3_A 88 NNATARVMTN 97 (103)
T ss_dssp EECCSSCCCC
T ss_pred EEcccCCCCC
Confidence 9998876544
No 194
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=5.1e-18 Score=137.19 Aligned_cols=81 Identities=26% Similarity=0.492 Sum_probs=76.0
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCc---eEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGK---VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~---V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
..++|||+|||+.+|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+|+. +||..|+||.|+|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 4569999999999999999999999999 89999999977 9999999999999999999999 99999999999999
Q ss_pred Eecccc
Q 019542 329 VAEDRQ 334 (339)
Q Consensus 329 ~a~~~~ 334 (339)
++.++.
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 986543
No 195
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.73 E-value=2.6e-17 Score=125.37 Aligned_cols=78 Identities=24% Similarity=0.466 Sum_probs=72.0
Q ss_pred CCCCceEEecCCCc-cccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 250 FEPGFRIYVGNLPW-EVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 250 ~~~~~~l~V~nLp~-~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
..+.++|||+|||+ .+++++|+.+|+.||.|..+++. +|||||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567999999998 99999999999999999999982 7899999999999999999999999999999999
Q ss_pred Eeccccc
Q 019542 329 VAEDRQR 335 (339)
Q Consensus 329 ~a~~~~~ 335 (339)
|++.+.|
T Consensus 91 ~a~~~~r 97 (97)
T 2xnq_A 91 VSSSNAR 97 (97)
T ss_dssp ECCCCC-
T ss_pred ecCCCCC
Confidence 9988764
No 196
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=5.8e-18 Score=122.49 Aligned_cols=75 Identities=36% Similarity=0.663 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 161 ~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
+|||+|||+++++++|+++|++||.|..+++..++.+|+++|||||+|.+.++|.+|+. +++..++|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999998 7999999999999875
No 197
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=5.7e-18 Score=128.26 Aligned_cols=83 Identities=18% Similarity=0.253 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
.+..++|||+|||+++++++|+++|.+||.|..+.++.+..+|+++|||||+|.+.++|.+|+..+|+..|.||.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 019542 236 AAP 238 (339)
Q Consensus 236 a~~ 238 (339)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 753
No 198
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=1.2e-17 Score=131.24 Aligned_cols=81 Identities=21% Similarity=0.374 Sum_probs=75.0
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
++++|||+|||+.+++++|+.+|+.||.|..+.|+++ +.++|||||+|.+.++|.+|+..|||..++|+.|+|.|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4569999999999999999999999999999999865 5569999999999999999999999999999999999998
Q ss_pred cccc
Q 019542 332 DRQR 335 (339)
Q Consensus 332 ~~~~ 335 (339)
++..
T Consensus 84 ~~~~ 87 (115)
T 3lqv_A 84 ANRA 87 (115)
T ss_dssp HHHH
T ss_pred CChh
Confidence 7554
No 199
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=5.9e-18 Score=129.78 Aligned_cols=79 Identities=32% Similarity=0.564 Sum_probs=74.0
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccc
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~ 333 (339)
++|||+|||+.+++++|+++|++||.|..+.++++ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.|++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 38999999999999999999999999999999876 6899999999999999999999999999999999999887
Q ss_pred ccCC
Q 019542 334 QRRS 337 (339)
Q Consensus 334 ~~~s 337 (339)
++.+
T Consensus 76 ~~~~ 79 (101)
T 2hvz_A 76 PRRS 79 (101)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7543
No 200
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=137.59 Aligned_cols=81 Identities=20% Similarity=0.350 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC--CeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAG--TVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G--~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
..++|||||||+++++++|+++|++|| .|..|+++.++.+|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 019542 236 AAP 238 (339)
Q Consensus 236 a~~ 238 (339)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 201
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.2e-17 Score=128.96 Aligned_cols=86 Identities=41% Similarity=0.556 Sum_probs=80.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.....++|||+|||+++++++|+++|.+||.|..|+++.++.+++++|||||+|.+.++|.+|+..+++ .|.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 445678999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred ccCCCCC
Q 019542 235 KAAPRGT 241 (339)
Q Consensus 235 ~a~~~~~ 241 (339)
++.....
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9976543
No 202
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.1e-17 Score=123.65 Aligned_cols=81 Identities=27% Similarity=0.460 Sum_probs=73.7
Q ss_pred CCCCCCceEEecCCCccccHHHHHHHHhcc--CceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 019542 248 RVFEPGFRIYVGNLPWEVDNARLEQVFSEH--GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 325 (339)
Q Consensus 248 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~--G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l 325 (339)
....+.++|||+|||+.+++++|+.+|+.| |.|..+.+. +|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344566799999999999999999999999 999998874 6799999999999999999999999999999
Q ss_pred EEEEecccccC
Q 019542 326 RVNVAEDRQRR 336 (339)
Q Consensus 326 ~V~~a~~~~~~ 336 (339)
+|.|++++.+.
T Consensus 82 ~v~~a~~~~~~ 92 (99)
T 2cpd_A 82 EVTLAKPVDKD 92 (99)
T ss_dssp EEECCCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999987654
No 203
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=128.84 Aligned_cols=79 Identities=20% Similarity=0.497 Sum_probs=74.1
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+.++|||+|||+.+++++|+.+|+.||.|..|+|+++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 4569999999999999999999999999999999865 8999999999999999999999999999999999998
Q ss_pred ccccC
Q 019542 332 DRQRR 336 (339)
Q Consensus 332 ~~~~~ 336 (339)
+++..
T Consensus 98 ~~~~~ 102 (109)
T 1x4g_A 98 ESPDM 102 (109)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87654
No 204
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=7.3e-18 Score=131.25 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=72.5
Q ss_pred CCCCceEEecCCCcc-ccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCeEEE
Q 019542 250 FEPGFRIYVGNLPWE-VDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG--QNLDGRAIR 326 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~-~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g--~~l~gr~l~ 326 (339)
..++++|||+|||+. +++++|+++|++||.|..|+|++ ++|||||+|.+.++|.+|+..|++ ..|.||.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456779999999998 99999999999999999999963 489999999999999999998864 569999999
Q ss_pred EEEecccccC
Q 019542 327 VNVAEDRQRR 336 (339)
Q Consensus 327 V~~a~~~~~~ 336 (339)
|.|++.+.+.
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999876653
No 205
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=128.01 Aligned_cols=83 Identities=33% Similarity=0.607 Sum_probs=79.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..++|||+|||+++++++|+++|++||.|..+++..++.+|+++|||||+|.+.++|.+|+..+|+..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 019542 238 PRG 240 (339)
Q Consensus 238 ~~~ 240 (339)
+..
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 664
No 206
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=2.9e-17 Score=127.20 Aligned_cols=82 Identities=29% Similarity=0.454 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+.+++++|+++|.+||.|..++++.+. +|+++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ccC
Q 019542 235 KAA 237 (339)
Q Consensus 235 ~a~ 237 (339)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 207
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=9.1e-18 Score=127.64 Aligned_cols=82 Identities=22% Similarity=0.451 Sum_probs=75.6
Q ss_pred CCCceEEecCCCccccHHHHH----HHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 019542 251 EPGFRIYVGNLPWEVDNARLE----QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 326 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~----~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~ 326 (339)
.++++|||+|||+.+++++|+ ++|+.||.|..+.+.+ +|.++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 355699999999999999999 9999999999999873 478899999999999999999999999999999999
Q ss_pred EEEeccccc
Q 019542 327 VNVAEDRQR 335 (339)
Q Consensus 327 V~~a~~~~~ 335 (339)
|.|++++..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999988654
No 208
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.3e-17 Score=123.12 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
....++|||+|||+++++++|+++|++| .|..++++++ .+|+++|||||+|.+.++|.+|+. +|+..|.|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4457899999999999999999999999 8999999998 779999999999999999999999 999999999999999
Q ss_pred cCCCC
Q 019542 236 AAPRG 240 (339)
Q Consensus 236 a~~~~ 240 (339)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 97764
No 209
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=2.3e-18 Score=124.61 Aligned_cols=75 Identities=24% Similarity=0.457 Sum_probs=72.2
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
+|||+|||+.+++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+. +++..+.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999999 5999999999999986
No 210
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=127.11 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
.+..++|||+|||+++++++|+++|.+||.|..+.++.+..+|+++|||||+|.+.++|.+|+..+|+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 019542 236 AAPRG 240 (339)
Q Consensus 236 a~~~~ 240 (339)
+....
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87543
No 211
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=3.8e-19 Score=140.09 Aligned_cols=86 Identities=26% Similarity=0.373 Sum_probs=80.8
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEE--------EEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVN--------ARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG 322 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~--------v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~g 322 (339)
.+.++|||+|||+.+++++|+++|+.||.|.. ++|++++.+|+++|||||+|.+.++|.+|+..|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34569999999999999999999999999999 9999998899999999999999999999999999999999
Q ss_pred eEEEEEEecccccC
Q 019542 323 RAIRVNVAEDRQRR 336 (339)
Q Consensus 323 r~l~V~~a~~~~~~ 336 (339)
+.|+|.|+++++..
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999887654
No 212
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.8e-17 Score=130.81 Aligned_cols=82 Identities=29% Similarity=0.496 Sum_probs=78.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
..++.++|||+|||+++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|+..+|+..+.|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 019542 235 KA 236 (339)
Q Consensus 235 ~a 236 (339)
++
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 76
No 213
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=4.2e-18 Score=125.26 Aligned_cols=73 Identities=32% Similarity=0.479 Sum_probs=68.2
Q ss_pred ceEEecCCCccc------cHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe-EEE
Q 019542 254 FRIYVGNLPWEV------DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGR-AIR 326 (339)
Q Consensus 254 ~~l~V~nLp~~~------tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr-~l~ 326 (339)
++|||+|||+.+ ++++|+.+|++||.|..++++ +.+|+++|||||+|.+.++|.+|+..|||..+.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 789999999999999999987 46899999999999999999999999999999999 887
Q ss_pred EE
Q 019542 327 VN 328 (339)
Q Consensus 327 V~ 328 (339)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 214
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.3e-17 Score=123.77 Aligned_cols=86 Identities=24% Similarity=0.365 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.....++|||+|||+++++++|+++|++||.|..|+++.+.. .++|||||+|.+.++|.+|+..+++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 445678999999999999999999999999999999998754 368999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 019542 235 KAAPRGTQ 242 (339)
Q Consensus 235 ~a~~~~~~ 242 (339)
++.+....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 99876544
No 215
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.72 E-value=3.6e-17 Score=124.44 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=72.2
Q ss_pred cCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcc--cCCce
Q 019542 153 FVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYD--IDGRL 230 (339)
Q Consensus 153 ~~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~--l~gr~ 230 (339)
....+++++|||+|||+++++++|+++|++||.|..+++++ .||||||+|.+.++|.+|+..+++.. +.||+
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 34556789999999999999999999999999999999873 48999999999999999999998875 78999
Q ss_pred eeeeccCCC
Q 019542 231 LTVNKAAPR 239 (339)
Q Consensus 231 l~V~~a~~~ 239 (339)
|+|.++..+
T Consensus 89 i~V~~S~~k 97 (100)
T 3r27_A 89 AFVNYSTSQ 97 (100)
T ss_dssp EEEEECSCS
T ss_pred EEEEecccc
Confidence 999998764
No 216
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.1e-17 Score=122.88 Aligned_cols=79 Identities=27% Similarity=0.515 Sum_probs=72.9
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+.++|||+|||+.+++++|+++|+.||.|..+.++ ++||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 455799999999999999999999999999999996 449999999999999999999999999999999999
Q ss_pred cccccCC
Q 019542 331 EDRQRRS 337 (339)
Q Consensus 331 ~~~~~~s 337 (339)
+++.+..
T Consensus 80 ~~~~~~~ 86 (92)
T 2dgt_A 80 TSRLRTA 86 (92)
T ss_dssp SCCCSCC
T ss_pred cCCCCCC
Confidence 8877653
No 217
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=126.32 Aligned_cols=84 Identities=24% Similarity=0.336 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE-EEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEI-AEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~-v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
....++|||+|||+++++++|+++|.+||.|.. |+|+.+ .+|+++|||||+|.+.++|.+|+.. ++..++||.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345789999999999999999999999999987 888887 7899999999999999999999998 9999999999999
Q ss_pred ccCCCCC
Q 019542 235 KAAPRGT 241 (339)
Q Consensus 235 ~a~~~~~ 241 (339)
++.....
T Consensus 90 ~~~~~~~ 96 (104)
T 1wg5_A 90 KSSRAEV 96 (104)
T ss_dssp EECTTTS
T ss_pred ECCHHHH
Confidence 9876543
No 218
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=121.55 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=70.1
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCeEEEEEE
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL-DGQNLDGRAIRVNV 329 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l-~g~~l~gr~l~V~~ 329 (339)
.+.++|||+|||+.+++++|+++|++||.|..++++++ +|||||+|.+.++|.+|+..| +|..++|+.|+|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 34569999999999999999999999999999999864 899999999999999999998 99999999999999
Q ss_pred ec
Q 019542 330 AE 331 (339)
Q Consensus 330 a~ 331 (339)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 219
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=9.9e-18 Score=128.41 Aligned_cols=84 Identities=21% Similarity=0.427 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecC-CCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNR-ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~-~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
.....++|||+|||+++++++|+++|++|| |..+++..+. .+|+++|||||+|.+.++|.+|+ .+++..++|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345678999999999999999999999999 9999999988 68999999999999999999999 88999999999999
Q ss_pred eccCCCC
Q 019542 234 NKAAPRG 240 (339)
Q Consensus 234 ~~a~~~~ 240 (339)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9987653
No 220
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1e-16 Score=125.57 Aligned_cols=86 Identities=30% Similarity=0.397 Sum_probs=79.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+++++++|+++|.+||.|..++++.+. +|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999987 49999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019542 235 KAAPRGT 241 (339)
Q Consensus 235 ~a~~~~~ 241 (339)
++.....
T Consensus 90 ~a~~~~~ 96 (114)
T 2do0_A 90 MDERALP 96 (114)
T ss_dssp ECSCCCC
T ss_pred EcccCCC
Confidence 9875443
No 221
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.71 E-value=4.5e-17 Score=135.12 Aligned_cols=88 Identities=32% Similarity=0.390 Sum_probs=82.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
.....+|||+|||+++++++|+++|++||.|..++++.+..+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 019542 236 AAPRGTQP 243 (339)
Q Consensus 236 a~~~~~~~ 243 (339)
+.+.....
T Consensus 147 a~~~~~~~ 154 (158)
T 2kn4_A 147 ARYGRPPD 154 (158)
T ss_dssp ECCSSCCC
T ss_pred CCCCCCCC
Confidence 98765543
No 222
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=123.90 Aligned_cols=82 Identities=24% Similarity=0.363 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCcee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLA----MLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLL 231 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~----~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l 231 (339)
.....+|||+|||+++++++|+ ++|++||.|..|+++.+..+ +|||||+|.+.++|.+|+..+|+..+.|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456799999999999999999 99999999999999988765 8999999999999999999999999999999
Q ss_pred eeeccCCCC
Q 019542 232 TVNKAAPRG 240 (339)
Q Consensus 232 ~V~~a~~~~ 240 (339)
+|.++.+..
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997654
No 223
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=2.3e-17 Score=128.26 Aligned_cols=79 Identities=20% Similarity=0.467 Sum_probs=72.7
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+.+|+.||.|..+.+. +|||||+|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456799999999999999999999999999999996 78999999999999999999999999999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
+++++++
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9987764
No 224
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=122.48 Aligned_cols=78 Identities=29% Similarity=0.631 Sum_probs=72.1
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+.++|||+|||+.+++++|+.+|+.||.|..++++ +|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 345699999999999999999999999999999996 449999999999999999999999999999999999
Q ss_pred cccccC
Q 019542 331 EDRQRR 336 (339)
Q Consensus 331 ~~~~~~ 336 (339)
+++.++
T Consensus 79 ~~~~~~ 84 (90)
T 2dnp_A 79 TKGQKK 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 877654
No 225
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=8e-18 Score=122.28 Aligned_cols=76 Identities=30% Similarity=0.500 Sum_probs=73.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
++|||+|||+++++++|+++|++||.|..+++..++.+|+++|||||+|.+.++|.+|+..++ ..++|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999988 9999999999876
No 226
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=2.9e-17 Score=131.12 Aligned_cols=88 Identities=24% Similarity=0.337 Sum_probs=81.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+++++++|+.+|.+||.|..|.++.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34457899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 019542 235 KAAPRGTQ 242 (339)
Q Consensus 235 ~a~~~~~~ 242 (339)
++.++...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99766543
No 227
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=126.72 Aligned_cols=87 Identities=23% Similarity=0.311 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC-eeEEEEE-ecCCCCCcccEEEEEeccHHHHHHHHHHhC--CcccCCcee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGT-VEIAEVI-YNRETDRSRGFGFVTMSTVEEAEKAVEMFH--RYDIDGRLL 231 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~-i~~v~~~-~~~~~g~~kg~afV~f~~~e~a~~Al~~~~--~~~l~gr~l 231 (339)
..+.++|||+|||+++++++|+++|.+||. |..+.++ .+..+|+++|||||+|.+.++|.+|+..++ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred eeeccCCCCCC
Q 019542 232 TVNKAAPRGTQ 242 (339)
Q Consensus 232 ~V~~a~~~~~~ 242 (339)
+|.++.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999877654
No 228
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=130.66 Aligned_cols=85 Identities=33% Similarity=0.568 Sum_probs=80.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..++|||+|||+++++++|+++|.+||.|..|+++.++.+|+++|||||+|.+.++|.+|+.. ++..|.|+.|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999999999999999999999999999999998 9999999999999998
Q ss_pred CCCCCC
Q 019542 238 PRGTQP 243 (339)
Q Consensus 238 ~~~~~~ 243 (339)
++....
T Consensus 105 ~~~~~~ 110 (116)
T 1x4b_A 105 AREESG 110 (116)
T ss_dssp SCCCCC
T ss_pred CCccCC
Confidence 776543
No 229
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=4e-18 Score=132.33 Aligned_cols=82 Identities=21% Similarity=0.378 Sum_probs=76.5
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCc---eEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGK---VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 327 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~---V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V 327 (339)
...++|||+|||+.+++++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+|+. +||..|+||.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 44569999999999999999999999988 89999999977 9999999999999999999999 9999999999999
Q ss_pred EEecccc
Q 019542 328 NVAEDRQ 334 (339)
Q Consensus 328 ~~a~~~~ 334 (339)
.++.++.
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9987654
No 230
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=1.1e-17 Score=128.42 Aligned_cols=82 Identities=23% Similarity=0.529 Sum_probs=76.0
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+.++|||+|||+.+++++|+.+|+.||.|..++|++++ +|+++|||||+|.+.++|.+|+. +|..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34699999999999999999999999999999999997 99999999999999999999999 9999999999999998
Q ss_pred ccccC
Q 019542 332 DRQRR 336 (339)
Q Consensus 332 ~~~~~ 336 (339)
.+.+.
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 76543
No 231
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=2.5e-18 Score=139.48 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=75.3
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
...++|||+|||+.+++++|+++|++|| |..|+|++++. |+++|||||+|.+.++|.+|| .+|+..|+||.|+|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3456899999999999999999999999 77999999975 999999999999999999999 68999999999999999
Q ss_pred cccccC
Q 019542 331 EDRQRR 336 (339)
Q Consensus 331 ~~~~~~ 336 (339)
.++...
T Consensus 121 ~~~~~~ 126 (139)
T 2hgn_A 121 STTGAS 126 (139)
T ss_dssp CCSCC-
T ss_pred CCCCCC
Confidence 876653
No 232
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=1.1e-17 Score=147.44 Aligned_cols=81 Identities=23% Similarity=0.492 Sum_probs=77.1
Q ss_pred CceEEecCCCccccHHHHHHHHhccC--ceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHG--KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G--~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.++|||+|||+.+++++|+++|+.|| .|..|+|++++.+|+++|||||+|.+.++|.+||..|||..|.|+.|+|.|+
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 34899999999999999999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 019542 331 EDR 333 (339)
Q Consensus 331 ~~~ 333 (339)
.+.
T Consensus 148 ~~~ 150 (229)
T 3q2s_C 148 NKQ 150 (229)
T ss_dssp CHH
T ss_pred CCC
Confidence 643
No 233
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2e-17 Score=126.79 Aligned_cols=76 Identities=22% Similarity=0.407 Sum_probs=71.3
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
..++|||+|||+.+++++|+.+|+.||.|..+++. +++|||||+|.+.++|.+|+..|||..++|+.|+|.|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 35699999999999999999999999999999997 458999999999999999999999999999999999998
Q ss_pred cc
Q 019542 332 DR 333 (339)
Q Consensus 332 ~~ 333 (339)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 234
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=1.8e-17 Score=146.05 Aligned_cols=81 Identities=20% Similarity=0.387 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC--CeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAG--TVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G--~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
..++|||+|||+++++++|+++|.+|| .|..|+|++++.+|+++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 019542 236 AAP 238 (339)
Q Consensus 236 a~~ 238 (339)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 235
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=5.6e-17 Score=125.35 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCC------CHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCc-e
Q 019542 158 EDAKLFVGNLPYDV------DSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGR-L 230 (339)
Q Consensus 158 ~~~~vfVgnLp~~~------t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr-~ 230 (339)
..++|||+|||+.+ ++++|+.+|++||.|..+++. ..+|+++|||||+|.+.++|.+|+..+||..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999987 46799999999999999999999999999999998 9
Q ss_pred eeeeccCCCC
Q 019542 231 LTVNKAAPRG 240 (339)
Q Consensus 231 l~V~~a~~~~ 240 (339)
|+|.++....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999987554
No 236
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-17 Score=126.27 Aligned_cols=84 Identities=17% Similarity=0.243 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.+...++|||+|||+++++++|+++|.+||.+ .|+|++++ +|+++|||||+|.+.++|.+|+. +|+..|.||.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44567899999999999999999999999954 99999988 89999999999999999999996 59999999999999
Q ss_pred ccCCCCC
Q 019542 235 KAAPRGT 241 (339)
Q Consensus 235 ~a~~~~~ 241 (339)
.+.....
T Consensus 88 ~~~~~~~ 94 (102)
T 1wez_A 88 LNSTAGT 94 (102)
T ss_dssp EECCCCC
T ss_pred ECCCCCC
Confidence 8876553
No 237
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=1.3e-16 Score=127.03 Aligned_cols=88 Identities=30% Similarity=0.408 Sum_probs=81.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.....++|||+|||+++++++|+++|++||.|..+++..+. +|+++|||||+|.+.++|.+|+..+++..+.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34457899999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 019542 235 KAAPRGTQP 243 (339)
Q Consensus 235 ~a~~~~~~~ 243 (339)
++......+
T Consensus 110 ~a~~~~~~~ 118 (124)
T 2kt5_A 110 LVASQIDLE 118 (124)
T ss_dssp EECCTTCCC
T ss_pred EeCCCCCCC
Confidence 998765443
No 238
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=7.7e-17 Score=124.04 Aligned_cols=78 Identities=22% Similarity=0.444 Sum_probs=71.9
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+.++|||+|||+.+++++|+++|++||.|..|+++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 345699999999999999999999999999999986 569999999999999999999999999999999999
Q ss_pred cccccC
Q 019542 331 EDRQRR 336 (339)
Q Consensus 331 ~~~~~~ 336 (339)
+++..+
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876653
No 239
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.3e-17 Score=129.54 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=72.7
Q ss_pred ceEEecCC----CccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCCe
Q 019542 254 FRIYVGNL----PWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS----ETE----LNDAIA--ALDGQN 319 (339)
Q Consensus 254 ~~l~V~nL----p~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~----~e~----A~~Al~--~l~g~~ 319 (339)
+.|||+|| |+.+++++|+++|+.||.|..+.++.|+.||+++|||||+|.+ .++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 48999999 9999999999999999999999999999999999999999996 433 788988 789999
Q ss_pred eCCeEEEEEEeccc
Q 019542 320 LDGRAIRVNVAEDR 333 (339)
Q Consensus 320 l~gr~l~V~~a~~~ 333 (339)
|+||.|+|.+-...
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999997653
No 240
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=6.3e-18 Score=126.76 Aligned_cols=82 Identities=35% Similarity=0.644 Sum_probs=74.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCCC
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 239 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~~ 239 (339)
++|||+|||+++++++|+++|++||.|..+++..++.+|+++|||||+|.+.+ |.+|+..+|+..+.|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999876
Q ss_pred CCC
Q 019542 240 GTQ 242 (339)
Q Consensus 240 ~~~ 242 (339)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 241
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=1.6e-17 Score=159.74 Aligned_cols=85 Identities=25% Similarity=0.431 Sum_probs=80.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
.+..+|||+|||+.+|+++|+.+|.+||.|..|.|+.+..+|+++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 019542 237 APRGT 241 (339)
Q Consensus 237 ~~~~~ 241 (339)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86543
No 242
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.1e-17 Score=124.62 Aligned_cols=78 Identities=26% Similarity=0.517 Sum_probs=71.6
Q ss_pred CCCceEEecCCCc-cccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 251 EPGFRIYVGNLPW-EVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 251 ~~~~~l~V~nLp~-~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
.+.++|||+|||+ .+++++|+.+|++||.|..+.|. +|||||+|.+.++|.+|+..|||..+.|+.|+|.|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4567999999999 99999999999999999999983 78999999999999999999999999999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
++++.++
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9876654
No 243
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=1.1e-16 Score=132.64 Aligned_cols=86 Identities=23% Similarity=0.379 Sum_probs=81.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
..+.++|||+|||+++++++|+++|++||.|..|+|+.+..+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 019542 236 AAPRGT 241 (339)
Q Consensus 236 a~~~~~ 241 (339)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987554
No 244
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=7e-17 Score=140.70 Aligned_cols=84 Identities=26% Similarity=0.440 Sum_probs=78.7
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.|.++|||+|||+.+++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|+..+|+..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 35579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 019542 331 EDRQ 334 (339)
Q Consensus 331 ~~~~ 334 (339)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7654
No 245
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=6e-17 Score=128.89 Aligned_cols=83 Identities=16% Similarity=0.392 Sum_probs=78.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
.++|||+|||+++++++|+++|++||.|..|+++.++.+|+++|||||+|.+.++|.+|+ .+++..|.|+.|+|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 579999999999999999999999999999999999999999999999999999999999 7899999999999999876
Q ss_pred CCCC
Q 019542 239 RGTQ 242 (339)
Q Consensus 239 ~~~~ 242 (339)
....
T Consensus 115 ~~~~ 118 (124)
T 2jwn_A 115 NMPG 118 (124)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5443
No 246
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=2.3e-17 Score=121.29 Aligned_cols=74 Identities=23% Similarity=0.345 Sum_probs=68.9
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCc-ee
Q 019542 159 DAKLFVGNLPYDV------DSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGR-LL 231 (339)
Q Consensus 159 ~~~vfVgnLp~~~------t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr-~l 231 (339)
+++|||+|||+.+ ++++|+++|++||.|..+++. ..+|+++|||||+|.+.++|.+|+..+||..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 46799999999999999999999999999999999 89
Q ss_pred eee
Q 019542 232 TVN 234 (339)
Q Consensus 232 ~V~ 234 (339)
+|.
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 874
No 247
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-16 Score=122.85 Aligned_cols=85 Identities=27% Similarity=0.400 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+++++++|+++|.+||.|..+++.. +++++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345678999999999999999999999999999999854 35689999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 019542 235 KAAPRGTQ 242 (339)
Q Consensus 235 ~a~~~~~~ 242 (339)
++.+....
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99876543
No 248
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=9.6e-17 Score=133.43 Aligned_cols=83 Identities=27% Similarity=0.493 Sum_probs=79.1
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
.++|||+|||+.+++++|+++|+.||.|..+++++++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 46999999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred ccc
Q 019542 333 RQR 335 (339)
Q Consensus 333 ~~~ 335 (339)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 653
No 249
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=125.85 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=74.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhC--CcccCCcee
Q 019542 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFH--RYDIDGRLL 231 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~--~~~l~gr~l 231 (339)
...++.++|||+|||+++++++|+++|++||.|..|+++++ ||||||+|.+.++|.+|+..++ +..+.|+.|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34567889999999999999999999999999999999863 8999999999999999999887 468999999
Q ss_pred eeeccCCCCCCC
Q 019542 232 TVNKAAPRGTQP 243 (339)
Q Consensus 232 ~V~~a~~~~~~~ 243 (339)
+|.++..+....
T Consensus 100 ~V~~a~~k~~~~ 111 (119)
T 2ad9_A 100 YIQFSNHKELKT 111 (119)
T ss_dssp EEEECSSSSCCC
T ss_pred EEEEccCCCCCc
Confidence 999998766543
No 250
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-16 Score=124.48 Aligned_cols=83 Identities=24% Similarity=0.452 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCccc--------C
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI--------D 227 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l--------~ 227 (339)
....++|||+|||+++++++|+++|.+||.|..++++.+. +|+++|||||+|.+.++|.+|+..||+..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456899999999999999999999999999999999998 899999999999999999999999999999 5
Q ss_pred CceeeeeccCCC
Q 019542 228 GRLLTVNKAAPR 239 (339)
Q Consensus 228 gr~l~V~~a~~~ 239 (339)
+++|.|.++.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788888888754
No 251
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=7.5e-17 Score=134.41 Aligned_cols=84 Identities=26% Similarity=0.461 Sum_probs=79.7
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+.++|||+|||+.+++++|+++|+.||.|..+++++++.+|+++|||||+|.+.++|.+|+..|+|..+.|+.|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 019542 332 DRQR 335 (339)
Q Consensus 332 ~~~~ 335 (339)
++..
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
No 252
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=128.11 Aligned_cols=81 Identities=19% Similarity=0.349 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..++|||+|||+++++++|+++|.+||.|..|+++.+..+|+++|||||+|.+.++|.+|+ .+|+..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3579999999999999999999999999999999999999999999999999999999999 889999999999999876
Q ss_pred CC
Q 019542 238 PR 239 (339)
Q Consensus 238 ~~ 239 (339)
++
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 44
No 253
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.7e-17 Score=128.29 Aligned_cols=90 Identities=21% Similarity=0.331 Sum_probs=76.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
...++.++|||+|||+++++++|+++|.+||.|..+.+.....+|+++|||||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34456789999999999999999999999999843322222227899999999999999999999999999999999999
Q ss_pred eccCCCCCCC
Q 019542 234 NKAAPRGTQP 243 (339)
Q Consensus 234 ~~a~~~~~~~ 243 (339)
.++.++....
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpx_A 100 EFGKNKKQRS 109 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEccCCCCCC
Confidence 9998776543
No 254
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=130.03 Aligned_cols=82 Identities=29% Similarity=0.483 Sum_probs=77.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
..++.++|||+|||+++++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|.+|+..+|+..|.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 019542 235 KA 236 (339)
Q Consensus 235 ~a 236 (339)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 255
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=3.3e-17 Score=132.44 Aligned_cols=81 Identities=21% Similarity=0.325 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC---eeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGT---VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~---i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~ 232 (339)
....++|||+|||+++|+++|+++|++||. |..|++++++. |+++|||||+|.+.++|.+|+. +|+..|+||.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 345689999999999999999999999999 88999999988 9999999999999999999999 899999999999
Q ss_pred eeccCC
Q 019542 233 VNKAAP 238 (339)
Q Consensus 233 V~~a~~ 238 (339)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998753
No 256
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.5e-17 Score=129.28 Aligned_cols=84 Identities=15% Similarity=0.287 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCe-eEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTV-EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i-~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
.+.+.++|||+|||+++++++|+++|.+||.| ..|+|+++. +|+++|||||+|.+.++|.+|+.. |+..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34467899999999999999999999999999 889999988 899999999999999999999998 999999999999
Q ss_pred eccCCCC
Q 019542 234 NKAAPRG 240 (339)
Q Consensus 234 ~~a~~~~ 240 (339)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9887543
No 257
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=121.83 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCC--cccCCceee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHR--YDIDGRLLT 232 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~--~~l~gr~l~ 232 (339)
..++.++|||+|||+++++++|+++|++||.|..|++++ .||||||+|.+.++|.+|+..+++ ..+.|+.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445678999999999999999999999999999999874 389999999999999999998765 459999999
Q ss_pred eeccCCCCCC
Q 019542 233 VNKAAPRGTQ 242 (339)
Q Consensus 233 V~~a~~~~~~ 242 (339)
|.++..+...
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9999876543
No 258
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.69 E-value=7.4e-17 Score=118.69 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
.+..||||||++.+++++|+++|.+||+|..+++.. ++|||||+|.+.++|.+|++.||+..+.||.|+|..|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 467899999999999999999999999999999864 6999999999999999999999999999999999987
No 259
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.2e-17 Score=123.02 Aligned_cols=78 Identities=24% Similarity=0.435 Sum_probs=70.1
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCc-eEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC-CeeCCeEEEEEE
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGK-VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG-QNLDGRAIRVNV 329 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~-V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g-~~l~gr~l~V~~ 329 (339)
+.++|||+|||+.+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..++|+.|+|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4468999999999999999999999999 6666552 489999999999999999999999 999999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
++++..+
T Consensus 80 a~~~~~~ 86 (93)
T 2cqh_A 80 SVSKKLR 86 (93)
T ss_dssp CCCCCCC
T ss_pred ccCcccc
Confidence 9877654
No 260
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=3.5e-17 Score=132.38 Aligned_cols=88 Identities=32% Similarity=0.390 Sum_probs=81.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
..+.++|||+|||+++++++|+++|++||.|..|+++.+..+++++|||||+|.+.++|.+|+..+++..|.|+.|+|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 019542 236 AAPRGTQP 243 (339)
Q Consensus 236 a~~~~~~~ 243 (339)
+.+.....
T Consensus 124 a~~~~~~~ 131 (135)
T 2lea_A 124 ARYGRPPD 131 (135)
T ss_dssp CCCCCCCT
T ss_pred CCCCCCCc
Confidence 98766543
No 261
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=131.59 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=72.9
Q ss_pred CceEEecCCCccccHHHHHHHHhccCce----EEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKV----VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V----~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
.++|||+|||+.+++++|+++|+.||.| ..|+|+++ .+|+++|||||+|.+.++|.+||.. |+..|+||.|+|.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 4599999999999999999999999875 68999998 5899999999999999999999995 9999999999999
Q ss_pred Eeccc
Q 019542 329 VAEDR 333 (339)
Q Consensus 329 ~a~~~ 333 (339)
.+.++
T Consensus 101 ~a~~~ 105 (123)
T 2dha_A 101 RSTAA 105 (123)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98654
No 262
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.8e-17 Score=119.83 Aligned_cols=75 Identities=31% Similarity=0.448 Sum_probs=71.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 161 ~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
+|||+|||+++++++|+++|++||.|..+.+..++.+|+++|||||+|.+.++|.+|+.. ++..+.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999997 999999999999865
No 263
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=3.6e-17 Score=129.19 Aligned_cols=81 Identities=22% Similarity=0.332 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC---eeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGT---VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~---i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~ 232 (339)
....++|||+|||+++++++|+++|+.||. |..|+|+++.. |+++|||||+|.+.++|.+|+. +|+..|.||.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345689999999999999999999999999 89999999887 9999999999999999999999 799999999999
Q ss_pred eeccCC
Q 019542 233 VNKAAP 238 (339)
Q Consensus 233 V~~a~~ 238 (339)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998754
No 264
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=135.67 Aligned_cols=84 Identities=26% Similarity=0.410 Sum_probs=72.6
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEE-----eeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARV-----VYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 325 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i-----~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l 325 (339)
.+.++|||+|||+.+++++|+.+|+.||.|..+.+ ++...+|+++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 34569999999999999999999999999876410 1112468999999999999999999999999999999999
Q ss_pred EEEEecccc
Q 019542 326 RVNVAEDRQ 334 (339)
Q Consensus 326 ~V~~a~~~~ 334 (339)
+|.||+++.
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999997654
No 265
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.4e-17 Score=126.78 Aligned_cols=76 Identities=17% Similarity=0.094 Sum_probs=70.8
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
.++|||+|||+.+++++|+.+|++||.|..|.|++ ++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 46999999999999999999999999999998863 589999999999999999999999999999999999976
Q ss_pred cc
Q 019542 333 RQ 334 (339)
Q Consensus 333 ~~ 334 (339)
+.
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 266
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.5e-16 Score=120.69 Aligned_cols=83 Identities=14% Similarity=0.202 Sum_probs=73.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHh--CCcccCCcee
Q 019542 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF--HRYDIDGRLL 231 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~--~~~~l~gr~l 231 (339)
...++.++|||+|||+++++++|+.+|++||.|..++++++ ||||||+|.+.++|.+|+..+ ++..+.|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34456789999999999999999999999999999988753 899999999999999999976 4677999999
Q ss_pred eeeccCCCCCC
Q 019542 232 TVNKAAPRGTQ 242 (339)
Q Consensus 232 ~V~~a~~~~~~ 242 (339)
+|.++..+...
T Consensus 84 ~V~~a~~~~~~ 94 (101)
T 2cq1_A 84 YIQYSNHKELK 94 (101)
T ss_dssp EEEECSCSSCC
T ss_pred EEEEcCcccCc
Confidence 99999876544
No 267
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=8.9e-17 Score=125.50 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=78.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH---HHHhccCCeeEEEEEecCCCC---CcccEEEEEeccHHHHHHHHHHhCCcccCC
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLA---MLFEKAGTVEIAEVIYNRETD---RSRGFGFVTMSTVEEAEKAVEMFHRYDIDG 228 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~---~~F~~~G~i~~v~~~~~~~~g---~~kg~afV~f~~~e~a~~Al~~~~~~~l~g 228 (339)
.....++|||+|||+++++++|+ ++|.+||.|..+++..+..++ +++|||||+|.+.++|.+|+..||+..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 33456899999999999999999 999999999999999887654 566999999999999999999999999999
Q ss_pred ceeeeeccCCCCC
Q 019542 229 RLLTVNKAAPRGT 241 (339)
Q Consensus 229 r~l~V~~a~~~~~ 241 (339)
+.|+|.++.++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999987753
No 268
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.3e-16 Score=117.39 Aligned_cols=80 Identities=29% Similarity=0.576 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
..+.++|||+|||+++++++|+++|++||.|..+++. +|||||+|.+.++|.+|+..+|+..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 019542 236 AAPRGTQP 243 (339)
Q Consensus 236 a~~~~~~~ 243 (339)
+.++....
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98776543
No 269
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=122.06 Aligned_cols=84 Identities=30% Similarity=0.574 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|||+++++++|+++|.+||.| +++.+ .+++++|||||+|.+.++|.+|+..+|+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567999999999999999999999999987 45555 679999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 019542 235 KAAPRGTQ 242 (339)
Q Consensus 235 ~a~~~~~~ 242 (339)
++.++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 99877543
No 270
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.3e-17 Score=130.56 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.....++|||+|||+++++++|+++|.+||.|..+.++.+..+|+++|||||+|.+.++|.+||. +|+..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34466899999999999999999999999999887777777889999999999999999999999 89999999999999
Q ss_pred ccCC
Q 019542 235 KAAP 238 (339)
Q Consensus 235 ~a~~ 238 (339)
++..
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8864
No 271
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=2e-17 Score=126.79 Aligned_cols=85 Identities=22% Similarity=0.341 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
....++|||+|||+++++++|+.+|.+||.|.. .++.+..+|+++|||||+|.+.++|.+|+. +|+..+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345689999999999999999999999999887 666777789999999999999999999999 899999999999999
Q ss_pred cCCCCCC
Q 019542 236 AAPRGTQ 242 (339)
Q Consensus 236 a~~~~~~ 242 (339)
+.++...
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9876543
No 272
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=127.04 Aligned_cols=82 Identities=23% Similarity=0.321 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCcee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLA----MLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLL 231 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~----~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l 231 (339)
.++.++|||+|||+.+++++|+ ++|++||.|..|.+. .+++++|||||+|.+.++|..|+..+||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4557899999999999999876 699999999988774 368899999999999999999999999999999999
Q ss_pred eeeccCCCC
Q 019542 232 TVNKAAPRG 240 (339)
Q Consensus 232 ~V~~a~~~~ 240 (339)
+|.++..+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999997654
No 273
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.7e-16 Score=131.74 Aligned_cols=81 Identities=33% Similarity=0.589 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
.+.++|||+|||+++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|.+|+..+|+..++|+.|+|.++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C
Q 019542 237 A 237 (339)
Q Consensus 237 ~ 237 (339)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 274
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.9e-16 Score=119.39 Aligned_cols=79 Identities=23% Similarity=0.389 Sum_probs=71.9
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|| .+++++|+++|++||.|..|.|. +++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345679999996 89999999999999999999984 5689999999999999999999999999999999999
Q ss_pred ecccccC
Q 019542 330 AEDRQRR 336 (339)
Q Consensus 330 a~~~~~~ 336 (339)
+.+++..
T Consensus 84 a~~~~~~ 90 (97)
T 1x5p_A 84 ARKQPML 90 (97)
T ss_dssp CSSCCCC
T ss_pred CCCCCCC
Confidence 9887654
No 275
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=124.47 Aligned_cols=83 Identities=33% Similarity=0.611 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.....++|||+|||+++++++|+++|++||.|..+++..+. +.++|||||+|.+.++|.+|+..+++..++|+.|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999998875 4589999999999999999999999999999999999
Q ss_pred ccCCC
Q 019542 235 KAAPR 239 (339)
Q Consensus 235 ~a~~~ 239 (339)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98765
No 276
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=1.5e-16 Score=134.55 Aligned_cols=85 Identities=31% Similarity=0.538 Sum_probs=79.9
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..++++|||+|||+.+++++|+++|+.||.|..|.|++++ +|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4456899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred eccccc
Q 019542 330 AEDRQR 335 (339)
Q Consensus 330 a~~~~~ 335 (339)
|.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 986543
No 277
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=3.5e-17 Score=130.34 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=73.6
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceE--EEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVV--NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~--~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
...++|||+|||+.+++++|+++|+.| .|. .|+|++++. |+++|||||+|.+.++|.+|+. +++..|+||.|+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 345689999999999999999999999 677 999999976 9999999999999999999999 58899999999999
Q ss_pred Eecccc
Q 019542 329 VAEDRQ 334 (339)
Q Consensus 329 ~a~~~~ 334 (339)
++.++.
T Consensus 117 ~a~~~e 122 (126)
T 2hgm_A 117 KSSQEE 122 (126)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987543
No 278
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=4.1e-17 Score=126.56 Aligned_cols=82 Identities=20% Similarity=0.312 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC---eeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGT---VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~---i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~ 232 (339)
....++|||+|||+++++++|+++|+.||. |..|+++++.. |+++|||||+|.+.++|.+|+. +++..++||.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345789999999999999999999999998 89999999888 9999999999999999999999 799999999999
Q ss_pred eeccCCC
Q 019542 233 VNKAAPR 239 (339)
Q Consensus 233 V~~a~~~ 239 (339)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9988643
No 279
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4e-16 Score=118.65 Aligned_cols=81 Identities=23% Similarity=0.367 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
..+..++|||+|||+++++++|+.+|++||.|. +.++. ++++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344578999999999999999999999999996 66664 4679999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019542 235 KAAPRG 240 (339)
Q Consensus 235 ~a~~~~ 240 (339)
++.++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 997654
No 280
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=121.38 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCc--ccCCcee
Q 019542 155 EPPEDAKLFVGNLPY-DVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRY--DIDGRLL 231 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~-~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~--~l~gr~l 231 (339)
...+.++|||+|||+ ++++++|+++|.+||.|..|+++++ +|||||+|.+.++|..|+..+++. .|.||+|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 344678999999999 9999999999999999999999743 689999999999999999988864 4999999
Q ss_pred eeeccCCCC
Q 019542 232 TVNKAAPRG 240 (339)
Q Consensus 232 ~V~~a~~~~ 240 (339)
+|.++....
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999998654
No 281
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.1e-16 Score=121.18 Aligned_cols=82 Identities=18% Similarity=0.353 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
..+..++|||+|||+++++++|+.+|++||.|..|++..+ +|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999999864 8999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 019542 235 KAAPRGTQ 242 (339)
Q Consensus 235 ~a~~~~~~ 242 (339)
++.+....
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99877654
No 282
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=1.5e-16 Score=118.85 Aligned_cols=76 Identities=18% Similarity=0.294 Sum_probs=70.4
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+.++|||+|||+.+++++|+++|++| .|..+++. +++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 34589999999999999999999999 99999884 579999999999999999999999999999999999997
Q ss_pred ccc
Q 019542 332 DRQ 334 (339)
Q Consensus 332 ~~~ 334 (339)
.+.
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 283
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.8e-16 Score=118.71 Aligned_cols=82 Identities=18% Similarity=0.355 Sum_probs=74.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccC--Ccee
Q 019542 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDID--GRLL 231 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~--gr~l 231 (339)
...++.++|||+|||+++++++|+++|++||.|..+.+... +|||||+|.+.++|.+|+..+|+..+. |+.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 34566789999999999999999999999999999988642 789999999999999999999999999 9999
Q ss_pred eeeccCCCCC
Q 019542 232 TVNKAAPRGT 241 (339)
Q Consensus 232 ~V~~a~~~~~ 241 (339)
+|.++.++..
T Consensus 86 ~V~~a~~~~~ 95 (97)
T 1why_A 86 RVDFAKSGPS 95 (97)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCCC
Confidence 9999987643
No 284
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.2e-16 Score=116.80 Aligned_cols=80 Identities=25% Similarity=0.468 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.....++|||+|||+++++++|+++|++||.|..+++. ++||||+|.+.++|.+|+..+|+..+.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999986 4599999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 019542 235 KAAPRGTQ 242 (339)
Q Consensus 235 ~a~~~~~~ 242 (339)
++.+....
T Consensus 77 ~a~~~~~~ 84 (90)
T 2dnp_A 77 LSTKGQKK 84 (90)
T ss_dssp ESCCCCCC
T ss_pred ECCCCCCC
Confidence 99877543
No 285
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=119.73 Aligned_cols=80 Identities=24% Similarity=0.285 Sum_probs=72.2
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEE-EeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNAR-VVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~-i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
..++|||+|||+.+++++|+.+|+.||.|..++ |++++.+ |.|||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 346899999999999999999999999999994 8777544 34999999999999999999999999999999999
Q ss_pred ccccc
Q 019542 331 EDRQR 335 (339)
Q Consensus 331 ~~~~~ 335 (339)
.++..
T Consensus 90 ~~~~~ 94 (96)
T 2e44_A 90 PDEMA 94 (96)
T ss_dssp CCCCS
T ss_pred Ccccc
Confidence 98753
No 286
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=1.2e-16 Score=124.51 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAG-TVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G-~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
.++...+|||+|||+++++++|+++|++|| .|..+.+.. ++++|||||+|.+.++|.+|+..+|+..+.||.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 445668999999999999999999999999 899988853 357999999999999999999999999999999999
Q ss_pred eccCCC
Q 019542 234 NKAAPR 239 (339)
Q Consensus 234 ~~a~~~ 239 (339)
.++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998654
No 287
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=123.33 Aligned_cols=77 Identities=18% Similarity=0.289 Sum_probs=71.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
..+|||+|||+++++++|+++|++| .|..|+|++++. |+++|||||+|.+.++|.+|+ .+|+..|+||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4699999999999999999999999 899999999876 999999999999999999999 5799999999999987754
No 288
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.8e-16 Score=120.36 Aligned_cols=77 Identities=22% Similarity=0.367 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
++..++|||+|||+++++++|+.+|++||.|..+++. +++|||||+|.+.++|.+|+..+|+..++|+.|+|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3456899999999999999999999999999999987 4689999999999999999999999999999999999
Q ss_pred cCC
Q 019542 236 AAP 238 (339)
Q Consensus 236 a~~ 238 (339)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 289
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=119.26 Aligned_cols=78 Identities=26% Similarity=0.454 Sum_probs=70.1
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
.++|||+|||+.+++++|+.+|+.||.|..| +.++.+|+ ||||+|.+.++|.+|+. |||..|+|+.|+|.++.+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 4599999999999999999999999999987 55655555 99999999999999999 999999999999999986
Q ss_pred cccC
Q 019542 333 RQRR 336 (339)
Q Consensus 333 ~~~~ 336 (339)
+...
T Consensus 82 ~~~~ 85 (94)
T 2e5g_A 82 KEFQ 85 (94)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6543
No 290
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5e-16 Score=119.11 Aligned_cols=86 Identities=34% Similarity=0.524 Sum_probs=77.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
....+.++|||+|||+++++++|+++|+.|+ .++++.+..+++++|||||+|.+.++|.+|+..||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3455678999999999999999999999874 6778888889999999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 019542 234 NKAAPRGTQ 242 (339)
Q Consensus 234 ~~a~~~~~~ 242 (339)
.++.++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999877654
No 291
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=7.3e-16 Score=119.61 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCC-----cee
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDG-----RLL 231 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~g-----r~l 231 (339)
...++|||+|||+++++++|+++|.+||.|..+.++.+ |||||+|.+.++|.+|+..||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999865 899999999999999999999999999 999
Q ss_pred eeeccCCCCCCCC
Q 019542 232 TVNKAAPRGTQPE 244 (339)
Q Consensus 232 ~V~~a~~~~~~~~ 244 (339)
+|.++.++.....
T Consensus 86 ~V~~a~~~~~~~~ 98 (108)
T 1x4c_A 86 RVKVDGPRSPSYG 98 (108)
T ss_dssp EEEESSCCSCCCC
T ss_pred EEEeCCCCCCCCC
Confidence 9999988765443
No 292
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=2.5e-16 Score=117.96 Aligned_cols=77 Identities=25% Similarity=0.498 Sum_probs=63.3
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe--eCCeEEEEE
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN--LDGRAIRVN 328 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~--l~gr~l~V~ 328 (339)
.+.++|||+|||+.+++++|+++|++||.|..|+|+++ ++|||||+|.+.++|.+ ++|.. +.|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 34569999999999999999999999999999999864 69999999999999883 56665 469999999
Q ss_pred EecccccC
Q 019542 329 VAEDRQRR 336 (339)
Q Consensus 329 ~a~~~~~~ 336 (339)
+|.++..+
T Consensus 80 ~a~~k~~~ 87 (89)
T 3d2w_A 80 NAEPKHNK 87 (89)
T ss_dssp ECC-----
T ss_pred EcCCCCcC
Confidence 99987654
No 293
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=1.1e-16 Score=121.58 Aligned_cols=83 Identities=17% Similarity=0.312 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCcee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLA----MLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLL 231 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~----~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l 231 (339)
.++.++|||+|||+++++++|+ ++|++||.|..+++.. +|+++|||||+|.+.++|.+|+..+|+..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999998863 57889999999999999999999999999999999
Q ss_pred eeeccCCCCC
Q 019542 232 TVNKAAPRGT 241 (339)
Q Consensus 232 ~V~~a~~~~~ 241 (339)
+|.++.+...
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999977543
No 294
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=123.22 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhC--CcccCCceee
Q 019542 156 PPEDAKLFVGNLPYD-VDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFH--RYDIDGRLLT 232 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~-~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~--~~~l~gr~l~ 232 (339)
.++.++|||+|||++ +++++|+++|.+||.|..|+|+ +.+|||||+|.+.++|.+|+..++ +..|.||.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 9999999999999999999996 358999999999999999999875 4569999999
Q ss_pred eeccCCCCC
Q 019542 233 VNKAAPRGT 241 (339)
Q Consensus 233 V~~a~~~~~ 241 (339)
|.++..+..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999976543
No 295
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=126.94 Aligned_cols=81 Identities=17% Similarity=0.280 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCe----eEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCcee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTV----EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLL 231 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i----~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l 231 (339)
.....+|||+|||+++++++|+++|++||.| ..|+|+++ .+|+++|||||+|.+.++|.+|+.. |+..|.||.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3456899999999999999999999999975 68999988 4799999999999999999999997 9999999999
Q ss_pred eeeccCC
Q 019542 232 TVNKAAP 238 (339)
Q Consensus 232 ~V~~a~~ 238 (339)
.|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9987753
No 296
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=123.49 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=70.6
Q ss_pred CCCceEEe--cCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee-----CCe
Q 019542 251 EPGFRIYV--GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL-----DGR 323 (339)
Q Consensus 251 ~~~~~l~V--~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l-----~gr 323 (339)
.+..+||| +||++.+++++|+++|++||.|..|.|+. ++|||||+|.+.++|.+|+..|||..+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34568999 77999999999999999999999998753 379999999999999999999999988 799
Q ss_pred EEEEEEeccccc
Q 019542 324 AIRVNVAEDRQR 335 (339)
Q Consensus 324 ~l~V~~a~~~~~ 335 (339)
.|.|.|++..+-
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 999999986553
No 297
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=7.8e-16 Score=117.42 Aligned_cols=81 Identities=32% Similarity=0.481 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
..++.++|||+|||+++++++|+++|.+||.|..+++.+ .+|||||+|.+.++|.+|+..+++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 445678999999999999999999999999999999873 38999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019542 235 KAAPRGT 241 (339)
Q Consensus 235 ~a~~~~~ 241 (339)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpj_A 85 FACHSAS 91 (99)
T ss_dssp ESSCCSC
T ss_pred EcCCCCC
Confidence 9987654
No 298
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=8.1e-16 Score=115.70 Aligned_cols=80 Identities=24% Similarity=0.421 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.....++|||+|||+++++++|+++|++||.|..+++. ++||||+|.+.++|.+|+..+|+..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999986 4599999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 019542 235 KAAPRGTQ 242 (339)
Q Consensus 235 ~a~~~~~~ 242 (339)
++.++...
T Consensus 78 ~a~~~~~~ 85 (92)
T 2dgt_A 78 LSTSRLRT 85 (92)
T ss_dssp ESSCCCSC
T ss_pred EccCCCCC
Confidence 99876543
No 299
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=1.7e-16 Score=126.41 Aligned_cols=81 Identities=23% Similarity=0.354 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCee--EEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVE--IAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~--~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~ 232 (339)
.+...++|||+|||+++++++|+++|++| .|. .|+|++++. |+++|||||+|.+.++|.+|+.. ++..|.||.|+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 34567899999999999999999999999 566 899999887 99999999999999999999996 78999999999
Q ss_pred eeccCC
Q 019542 233 VNKAAP 238 (339)
Q Consensus 233 V~~a~~ 238 (339)
|.++..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 300
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=4.4e-16 Score=133.14 Aligned_cols=84 Identities=32% Similarity=0.559 Sum_probs=77.4
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+++++|+++|+.||.|..|.|++++.+|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34567999999999999999999999999999999999999999999999999999999999985 99999999999999
Q ss_pred ecccc
Q 019542 330 AEDRQ 334 (339)
Q Consensus 330 a~~~~ 334 (339)
+.++.
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 97654
No 301
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.65 E-value=7.7e-16 Score=117.17 Aligned_cols=79 Identities=23% Similarity=0.377 Sum_probs=71.3
Q ss_pred cCCCCCCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCcee
Q 019542 153 FVEPPEDAKLFVGNLPY-DVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLL 231 (339)
Q Consensus 153 ~~~~~~~~~vfVgnLp~-~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l 231 (339)
....++.++|||+|||+ ++++++|+++|++||.|..+++. +|||||+|.+.++|.+|+..+++..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556789999999998 99999999999999999999882 8999999999999999999999999999999
Q ss_pred eeeccCCC
Q 019542 232 TVNKAAPR 239 (339)
Q Consensus 232 ~V~~a~~~ 239 (339)
+|.++..+
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998654
No 302
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=7.7e-16 Score=122.66 Aligned_cols=76 Identities=26% Similarity=0.402 Sum_probs=70.0
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCeeCC--eEEEEEEe
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGF-GFVTMSSETELNDAIAALDGQNLDG--RAIRVNVA 330 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~-afV~F~~~e~A~~Al~~l~g~~l~g--r~l~V~~a 330 (339)
.+|||+||++.+|+++|+++|++||.|..|++..+ ++|| |||+|.+.++|.+|+..|||..|.| +.|+|+|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 47899999999999999999999999999998765 2677 9999999999999999999999987 99999999
Q ss_pred cccc
Q 019542 331 EDRQ 334 (339)
Q Consensus 331 ~~~~ 334 (339)
+++.
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8753
No 303
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-15 Score=115.56 Aligned_cols=80 Identities=28% Similarity=0.385 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcc--CCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKA--GTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~--G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~ 232 (339)
..++.++|||+|||+++++++|+++|++| |.|..+++. +|||||+|.+.++|.+|+..+|+..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34467899999999999999999999999 899888764 78999999999999999999999999999999
Q ss_pred eeccCCCCCC
Q 019542 233 VNKAAPRGTQ 242 (339)
Q Consensus 233 V~~a~~~~~~ 242 (339)
|.++.++...
T Consensus 83 v~~a~~~~~~ 92 (99)
T 2cpd_A 83 VTLAKPVDKD 92 (99)
T ss_dssp EECCCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 304
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=3.8e-16 Score=130.69 Aligned_cols=80 Identities=20% Similarity=0.441 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..++|||+|||+++++++|+++|++||.|..+++..++.+|+++|||||+|.+.++|.+|+..+|+..++|+.|+|.+|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 36899999999999999999999999999999999999899999999999999999999999999999999999999874
No 305
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-16 Score=120.24 Aligned_cols=81 Identities=22% Similarity=0.455 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
..+.++|||+|||+++++++|+++|++||.|..+ ..+++++|||||+|.+.++|.+|+..+++..+.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999988665 45688999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 019542 236 AAPRGT 241 (339)
Q Consensus 236 a~~~~~ 241 (339)
+.++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 977654
No 306
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.1e-16 Score=116.45 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=64.9
Q ss_pred eEEecCCCccccHHH----HHHHHhcc-CceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 255 RIYVGNLPWEVDNAR----LEQVFSEH-GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 255 ~l~V~nLp~~~tee~----L~~~F~~~-G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
.|||+|||+.+++++ |+++|++| |+|..| ++ |+|||+|.+.++|.+|++.|+|..+.||.|+|+|
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 499999999999988 55899999 599888 23 9999999999999999999999999999999999
Q ss_pred eccccc
Q 019542 330 AEDRQR 335 (339)
Q Consensus 330 a~~~~~ 335 (339)
|+.+..
T Consensus 81 A~~~sd 86 (96)
T 2diu_A 81 TPKNRE 86 (96)
T ss_dssp SCCSCC
T ss_pred cCCCcc
Confidence 998764
No 307
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.65 E-value=6.1e-16 Score=120.14 Aligned_cols=79 Identities=27% Similarity=0.442 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.....++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..+|+..++|+.|+|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999987 7999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019542 235 KAAPRGT 241 (339)
Q Consensus 235 ~a~~~~~ 241 (339)
++.....
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9987654
No 308
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=1.1e-15 Score=118.06 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=73.0
Q ss_pred CCCceEEecCCCc-----cccHHHHHHHHhccCceEEEEEeeeCCC-CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 019542 251 EPGFRIYVGNLPW-----EVDNARLEQVFSEHGKVVNARVVYDRET-GRSRGFGFVTMSSETELNDAIAALDGQNLDGRA 324 (339)
Q Consensus 251 ~~~~~l~V~nLp~-----~~tee~L~~~F~~~G~V~~v~i~~d~~~-~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~ 324 (339)
.+..+|+|+|+.. +-++++|++.|++||.|..|.|++++.+ ++++|||||+|.+.++|.+|+..|||..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3456999999963 2378999999999999999999998654 689999999999999999999999999999999
Q ss_pred EEEEEecc
Q 019542 325 IRVNVAED 332 (339)
Q Consensus 325 l~V~~a~~ 332 (339)
|+|.|+.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999965
No 309
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.65 E-value=1.1e-15 Score=130.84 Aligned_cols=86 Identities=20% Similarity=0.432 Sum_probs=81.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
....++|||+|||+++++++|+++|++||.|..+++..+..+|+++|||||+|.+.++|.+|+..+|+..++|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 019542 236 AAPRGT 241 (339)
Q Consensus 236 a~~~~~ 241 (339)
+.++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987653
No 310
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-17 Score=131.46 Aligned_cols=86 Identities=23% Similarity=0.383 Sum_probs=80.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE--------EEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCC
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEI--------AEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDG 228 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~--------v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~g 228 (339)
.+.++|||+|||+++++++|+++|++||.|.. ++++.++.+|+++|||||+|.+.++|.+|+..||+..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45689999999999999999999999999998 8999998899999999999999999999999999999999
Q ss_pred ceeeeeccCCCCCC
Q 019542 229 RLLTVNKAAPRGTQ 242 (339)
Q Consensus 229 r~l~V~~a~~~~~~ 242 (339)
+.|+|.++.++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999876543
No 311
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=1.1e-16 Score=129.87 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
....++|||+|||+++++++|+++|++|| |..|+|++++. |+++|||||+|.+.++|.+|+ .+|+..|.||.|.|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999 67999999887 999999999999999999999 6699999999999998
Q ss_pred cCCCCC
Q 019542 236 AAPRGT 241 (339)
Q Consensus 236 a~~~~~ 241 (339)
+.....
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876544
No 312
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=114.69 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
....++|||+|||+++++++|+.+|++||.|..| +.+..+|+ ||||+|.+.++|.+|+. +++..|+|+.|+|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 56666665 99999999999999999 899999999999998
Q ss_pred cCCCCCC
Q 019542 236 AAPRGTQ 242 (339)
Q Consensus 236 a~~~~~~ 242 (339)
+..+...
T Consensus 79 a~~~~~~ 85 (94)
T 2e5g_A 79 REQKEFQ 85 (94)
T ss_dssp SCCSCCC
T ss_pred CCcCCCC
Confidence 8766543
No 313
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=1.8e-15 Score=129.76 Aligned_cols=121 Identities=13% Similarity=0.200 Sum_probs=92.2
Q ss_pred cHHHHHHHHHHh--CCcccCCceeeeeccCCCCCCCCCCC--CCCCCCceEEecCCCccccHHHHHHHHhccCceEEEEE
Q 019542 210 TVEEAEKAVEMF--HRYDIDGRLLTVNKAAPRGTQPERAP--RVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARV 285 (339)
Q Consensus 210 ~~e~a~~Al~~~--~~~~l~gr~l~V~~a~~~~~~~~~~~--~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i 285 (339)
+.+.+..|+... ....+.+...+|......+. +.... ......++|||+|||+.+++++|+.+|+.||.|..|+|
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~-p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPL-PEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCC-CCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCC-cccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEE
Confidence 556777777775 44455666666655522111 10000 01123468999999999999999999999999999999
Q ss_pred eeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEeccc
Q 019542 286 VYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 333 (339)
Q Consensus 286 ~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~ 333 (339)
+++. +|+++|||||+|.+.++|.+|+.. .+..++|+.|+|.|+.+-
T Consensus 142 ~~~~-~~~~kG~aFVeF~~~e~A~~A~~~-~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 142 RRTL-HKAFKGSIFVVFDSIESAKKFVET-PGQKYKETDLLILFKDDY 187 (193)
T ss_dssp EECT-TCCEEEEEEEEESSHHHHHHHHHC-TTCEETTEECEEEETTTC
T ss_pred EECC-CCCcccEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEhHHH
Confidence 9985 599999999999999999999985 456999999999998764
No 314
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=6.3e-16 Score=127.78 Aligned_cols=77 Identities=25% Similarity=0.344 Sum_probs=70.6
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC--eEEEEEEec
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG--RAIRVNVAE 331 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~g--r~l~V~~a~ 331 (339)
.+|||+||++.+++++|+++|++||.|..|+|..+ +++|||||+|.+.++|.+|+..|||..|.| +.|+|.|++
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 47999999999999999999999999999998643 358999999999999999999999999955 999999998
Q ss_pred ccc
Q 019542 332 DRQ 334 (339)
Q Consensus 332 ~~~ 334 (339)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 315
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.1e-16 Score=113.80 Aligned_cols=75 Identities=24% Similarity=0.338 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHh-CCcccCCceeeee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF-HRYDIDGRLLTVN 234 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~-~~~~l~gr~l~V~ 234 (339)
.+..++|||+|||+++++++|+++|++||.|..+++.. ++|||||+|.+.++|.+|+..+ ++..+.|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 34578999999999999999999999999999999985 4899999999999999999988 9999999999999
Q ss_pred cc
Q 019542 235 KA 236 (339)
Q Consensus 235 ~a 236 (339)
++
T Consensus 83 ~a 84 (85)
T 2ytc_A 83 WG 84 (85)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 316
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=6.1e-16 Score=117.41 Aligned_cols=80 Identities=24% Similarity=0.440 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 155 EPPEDAKLFVGNLPY-DVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~-~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
..++.++|||+|||+ ++++++|+.+|++||.|..+++. +|||||+|.+.++|.+|+..+++..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 445688999999999 99999999999999999999984 789999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 019542 234 NKAAPRGTQ 242 (339)
Q Consensus 234 ~~a~~~~~~ 242 (339)
.++......
T Consensus 78 ~~a~~~~~~ 86 (96)
T 2kvi_A 78 EVSSSNARP 86 (96)
T ss_dssp EEEECCCC-
T ss_pred EEcCcCCCC
Confidence 999766543
No 317
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.64 E-value=2.3e-15 Score=115.73 Aligned_cols=79 Identities=25% Similarity=0.400 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
.+.++|||+|||+++++++|+++|.+||.|..+++. +|||||+|.+.++|.+|+..|++..|.|+.|+|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456899999999999999999999999999999886 569999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 019542 237 APRGTQP 243 (339)
Q Consensus 237 ~~~~~~~ 243 (339)
.++....
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 8776543
No 318
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.63 E-value=1.8e-15 Score=117.67 Aligned_cols=78 Identities=27% Similarity=0.394 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 156 PPEDAKLFVGNLPYD-VDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~-~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
....++|||+|||++ +++++|+++|.+||.|..|.+ ++|||||+|.+.++|.+|+..|++..++|+.|+|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345689999999999 999999999999999999988 58999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019542 235 KAAPRGT 241 (339)
Q Consensus 235 ~a~~~~~ 241 (339)
++.....
T Consensus 96 ~a~~~~~ 102 (110)
T 1wf1_A 96 MAGEPKP 102 (110)
T ss_dssp ESCCCCS
T ss_pred ECCCCCC
Confidence 9975443
No 319
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=2.9e-16 Score=120.47 Aligned_cols=81 Identities=26% Similarity=0.508 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..++|||+|||+++++++|+.+|++||.|..++++.+. +|+++|||||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 35799999999999999999999999999999999998 89999999999999999999999 9999999999999887
Q ss_pred CCCC
Q 019542 238 PRGT 241 (339)
Q Consensus 238 ~~~~ 241 (339)
.+..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6543
No 320
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=3.9e-16 Score=122.64 Aligned_cols=76 Identities=29% Similarity=0.380 Sum_probs=67.0
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeE-----EEE
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA-----IRV 327 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~-----l~V 327 (339)
.++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+|+..|||..|+|+. |+|
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 468999999999999999999999999999999754 89999999999999999999999999998 888
Q ss_pred EEeccccc
Q 019542 328 NVAEDRQR 335 (339)
Q Consensus 328 ~~a~~~~~ 335 (339)
..+.++..
T Consensus 89 ~~~~~~~~ 96 (115)
T 3beg_B 89 KVDGPRSP 96 (115)
T ss_dssp EECC----
T ss_pred ccCCCCCC
Confidence 88776554
No 321
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.2e-16 Score=116.18 Aligned_cols=80 Identities=21% Similarity=0.406 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC-eeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCC-cccCCceeee
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGT-VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHR-YDIDGRLLTV 233 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~-i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~-~~l~gr~l~V 233 (339)
....++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..+|+ ..+.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 345789999999999999999999999999 6655552 489999999999999999999999 9999999999
Q ss_pred eccCCCCCC
Q 019542 234 NKAAPRGTQ 242 (339)
Q Consensus 234 ~~a~~~~~~ 242 (339)
.++.++...
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999876554
No 322
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=7.7e-16 Score=120.16 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..++|||+|||+++++++|+++|++||.|..|.+.. ++|||||+|.+.++|.+|+..||+..+.|+.|+|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 357999999999999999999999999999988863 68899999999999999999999999999999999986
Q ss_pred CCC
Q 019542 238 PRG 240 (339)
Q Consensus 238 ~~~ 240 (339)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 543
No 323
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=2.5e-15 Score=119.15 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=68.0
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCeeCC--eEEEEEEe
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGF-GFVTMSSETELNDAIAALDGQNLDG--RAIRVNVA 330 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~-afV~F~~~e~A~~Al~~l~g~~l~g--r~l~V~~a 330 (339)
..|||+||++.+++++|+++|++||.|..|+|... .|| |||+|.+.++|.+|+..|||..|.| +.|+|.||
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 35789999999999999999999999999998642 286 9999999999999999999999987 69999999
Q ss_pred cccc
Q 019542 331 EDRQ 334 (339)
Q Consensus 331 ~~~~ 334 (339)
+++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8764
No 324
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.62 E-value=1.8e-15 Score=124.35 Aligned_cols=81 Identities=26% Similarity=0.341 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.....++|||+|||+++++++|+++|++||.|..++++.+ ++|||||+|.+.++|.+|+..+|+..+.|+.|+|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4456789999999999999999999999999999999865 58999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019542 235 KAAPRG 240 (339)
Q Consensus 235 ~a~~~~ 240 (339)
++.++.
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 987653
No 325
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=2.6e-16 Score=128.37 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE-----EecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCC
Q 019542 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV-----IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDG 228 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~-----~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~g 228 (339)
....+.++|||+|||+++++++|+.+|++||.|..+.+ +....+|+++|||||+|.+.++|.+|+..+|+..|.|
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 34556789999999999999999999999999876410 1112468999999999999999999999999999999
Q ss_pred ceeeeeccCCCCCC
Q 019542 229 RLLTVNKAAPRGTQ 242 (339)
Q Consensus 229 r~l~V~~a~~~~~~ 242 (339)
+.|+|.++......
T Consensus 120 ~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 120 KPMVVQFARSARPK 133 (143)
T ss_dssp EECEEEECCCSCC-
T ss_pred cEEEEEECCCCCCc
Confidence 99999999765443
No 326
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=114.41 Aligned_cols=80 Identities=26% Similarity=0.291 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEE-EEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAE-VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~-~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
...++|||+|||+++++++|+.+|++||.|..++ ++.++.+| .|||+|.+.++|.+|+..+|+..+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3568999999999999999999999999999995 77666544 399999999999999999999999999999999
Q ss_pred cCCCC
Q 019542 236 AAPRG 240 (339)
Q Consensus 236 a~~~~ 240 (339)
+.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98774
No 327
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=1.2e-15 Score=129.07 Aligned_cols=84 Identities=31% Similarity=0.439 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeec
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 235 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~ 235 (339)
....++|||+|||+++++++|+++|++||.|..|.+..+. +|+++|||||+|.+.++|.+|+..+++..|.|+.|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 019542 236 AAPRG 240 (339)
Q Consensus 236 a~~~~ 240 (339)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 87653
No 328
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=6.5e-16 Score=121.14 Aligned_cols=76 Identities=21% Similarity=0.372 Sum_probs=65.2
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRET---GRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 328 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~---~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~ 328 (339)
..++|||+|||+.+++++|+++|++||.|. +.+++++.+ |+++|||||+|.+.++|.+|+..|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 346899999999999999999999999999 888888777 7999999999999999999999883 2555555554
Q ss_pred Ee
Q 019542 329 VA 330 (339)
Q Consensus 329 ~a 330 (339)
.+
T Consensus 84 ~~ 85 (114)
T 2dnl_A 84 SS 85 (114)
T ss_dssp CC
T ss_pred cC
Confidence 33
No 329
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=1.5e-15 Score=131.50 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=71.5
Q ss_pred CCceEEecCCC-ccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 252 PGFRIYVGNLP-WEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 252 ~~~~l~V~nLp-~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
++++|||+||| +.+++++|+++|+.||.|.+|+|+++ .+|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45699999999 89999999999999999999999865 3899999999999999999999999999999999999
Q ss_pred ccc
Q 019542 331 EDR 333 (339)
Q Consensus 331 ~~~ 333 (339)
+.+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 743
No 330
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=8.1e-16 Score=120.73 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=71.0
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEecc----HHH----HHHHHH--HhCCcc
Q 019542 160 AKLFVGNL----PYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMST----VEE----AEKAVE--MFHRYD 225 (339)
Q Consensus 160 ~~vfVgnL----p~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~----~e~----a~~Al~--~~~~~~ 225 (339)
..|||+|| |+.+++.+|+++|++||.|..+.++.++.||+++|||||+|.+ ++. |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 333 788888 679999
Q ss_pred cCCceeeeeccCC
Q 019542 226 IDGRLLTVNKAAP 238 (339)
Q Consensus 226 l~gr~l~V~~a~~ 238 (339)
|.||.|+|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999996543
No 331
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.60 E-value=4.7e-15 Score=128.65 Aligned_cols=86 Identities=21% Similarity=0.465 Sum_probs=81.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeecc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 236 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a 236 (339)
...++|||+|||+++++++|+++|++||.|..+++..+..+|+++|||||+|.+.++|.+|+..+|+..|+|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 019542 237 APRGTQ 242 (339)
Q Consensus 237 ~~~~~~ 242 (339)
.+....
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 877543
No 332
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.60 E-value=3.6e-15 Score=124.90 Aligned_cols=83 Identities=24% Similarity=0.430 Sum_probs=76.1
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCC--CcceEEEEEeCCHHHHHHHHHHhCCCeeC---CeEEEE
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETG--RSRGFGFVTMSSETELNDAIAALDGQNLD---GRAIRV 327 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~--~~kg~afV~F~~~e~A~~Al~~l~g~~l~---gr~l~V 327 (339)
.++|||+|||+.+++++|+++|++||.|..++|++++.+| +++|||||+|.+.++|.+|+..|||..+. ++.|.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 4699999999999999999999999999999999998877 89999999999999999999999998875 688888
Q ss_pred EEeccccc
Q 019542 328 NVAEDRQR 335 (339)
Q Consensus 328 ~~a~~~~~ 335 (339)
.++..+..
T Consensus 83 ~~~~~~~~ 90 (175)
T 3nmr_A 83 KPADSEKN 90 (175)
T ss_dssp EECGGGCC
T ss_pred cccccccc
Confidence 88876544
No 333
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.9e-15 Score=110.05 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=66.6
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHhcc-CCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCce
Q 019542 157 PEDAK-LFVGNLPYDVDSEK----LAMLFEKA-GTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRL 230 (339)
Q Consensus 157 ~~~~~-vfVgnLp~~~t~e~----L~~~F~~~-G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~ 230 (339)
++..| |||+|||+.+++++ |+++|++| |.|..| ++ |+|||.|.+.++|.+|++.|+|..+.||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 44566 99999999999888 55899999 599887 34 99999999999999999999999999999
Q ss_pred eeeeccCCCCC
Q 019542 231 LTVNKAAPRGT 241 (339)
Q Consensus 231 l~V~~a~~~~~ 241 (339)
|+|.+|..+..
T Consensus 76 i~v~~A~~~sd 86 (96)
T 2diu_A 76 IIVSFTPKNRE 86 (96)
T ss_dssp CEEESSCCSCC
T ss_pred EEEEecCCCcc
Confidence 99999987654
No 334
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.1e-16 Score=115.82 Aligned_cols=78 Identities=19% Similarity=0.360 Sum_probs=66.4
Q ss_pred CCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+.++|||+|||+.+++++|+++|++||.|..++|+++ ++|||||+|.+.++|.+|+. .+..+.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 3469999999999999999999999999999999754 69999999999999975432 1344599999999998
Q ss_pred ccccC
Q 019542 332 DRQRR 336 (339)
Q Consensus 332 ~~~~~ 336 (339)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 335
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.7e-15 Score=110.89 Aligned_cols=80 Identities=24% Similarity=0.280 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
...+.++|||+|| ++++++|+++|.+||.|..|.+. +++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3446789999995 99999999999999999999883 678999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 019542 235 KAAPRGTQ 242 (339)
Q Consensus 235 ~a~~~~~~ 242 (339)
++.++...
T Consensus 83 ~a~~~~~~ 90 (97)
T 1x5p_A 83 IARKQPML 90 (97)
T ss_dssp CCSSCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 336
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=1.6e-15 Score=112.62 Aligned_cols=71 Identities=27% Similarity=0.612 Sum_probs=65.8
Q ss_pred CCceEEecCCCccccHHHHHHHHhcc----C-------ceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 019542 252 PGFRIYVGNLPWEVDNARLEQVFSEH----G-------KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL 320 (339)
Q Consensus 252 ~~~~l~V~nLp~~~tee~L~~~F~~~----G-------~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l 320 (339)
+.++|||+|||+.+++++|+++|+.| | .|..+++.++ +|||||+|.+.++|.+|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45699999999999999999999999 8 8999998644 899999999999999999 8999999
Q ss_pred CCeEEEEEE
Q 019542 321 DGRAIRVNV 329 (339)
Q Consensus 321 ~gr~l~V~~ 329 (339)
.|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 337
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=2.3e-15 Score=119.32 Aligned_cols=78 Identities=23% Similarity=0.410 Sum_probs=71.0
Q ss_pred CCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 019542 251 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 330 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a 330 (339)
.+.++|||+|| .+++++|+.+|+.||.|..|.+. +++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45679999996 69999999999999999999985 46899999999999999999999999999999999999
Q ss_pred cccccC
Q 019542 331 EDRQRR 336 (339)
Q Consensus 331 ~~~~~~ 336 (339)
++++..
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 887654
No 338
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=3.4e-15 Score=131.40 Aligned_cols=105 Identities=24% Similarity=0.291 Sum_probs=79.7
Q ss_pred CCcccCCceeeeeccCCCCCCCCCCCCCCCCCceEEecCCCccc---------cHHHHHHHHhccCceEEEEEeeeCCCC
Q 019542 222 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEV---------DNARLEQVFSEHGKVVNARVVYDRETG 292 (339)
Q Consensus 222 ~~~~l~gr~l~V~~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~---------tee~L~~~F~~~G~V~~v~i~~d~~~~ 292 (339)
+.....||.....+........ ......++|||+||+..+ ++++|+.+|++||.|..|+|+.
T Consensus 107 ~~~D~fGr~k~~~~~d~~~g~g----s~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~----- 177 (240)
T 3u1l_A 107 EVLDCFGREKFADYREDMGGIG----SFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE----- 177 (240)
T ss_dssp SSBCTTSSBCGGGTC-------------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----
T ss_pred cCcccccchhcccchhcccCcC----ccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----
Confidence 4455668776555544332211 123356799999999998 7999999999999999999985
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCCee------------CCeEEEEEEecccccC
Q 019542 293 RSRGFGFVTMSSETELNDAIAALDGQNL------------DGRAIRVNVAEDRQRR 336 (339)
Q Consensus 293 ~~kg~afV~F~~~e~A~~Al~~l~g~~l------------~gr~l~V~~a~~~~~~ 336 (339)
++|||||+|.+.++|..|+..|+|..| .|+.|.|.||.+++.+
T Consensus 178 -~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 178 -SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp -GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred -CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 389999999999999999999999999 8999999999877654
No 339
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=3.8e-15 Score=111.12 Aligned_cols=76 Identities=28% Similarity=0.463 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..++|||+|||+++++++|+++|++| .|..+++. +++|||||+|.+.++|.+|+..+|+..+.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999884 679999999999999999999999999999999999986
Q ss_pred CCC
Q 019542 238 PRG 240 (339)
Q Consensus 238 ~~~ 240 (339)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 340
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.1e-15 Score=115.55 Aligned_cols=77 Identities=21% Similarity=0.418 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCC---CCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRET---DRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~---g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
...++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|+..+++ ++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 3468999999999999999999999999999 888877777 79999999999999999999999843 67777777
Q ss_pred ecc
Q 019542 234 NKA 236 (339)
Q Consensus 234 ~~a 236 (339)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 644
No 341
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=1.6e-15 Score=127.44 Aligned_cols=77 Identities=22% Similarity=0.467 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
..++|||+|||+++++++|+++|++||.|..+ ..+|+++|||||+|.+.++|.+|+..+|+..+.|+.|+|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 46799999999999999999999999988665 5678999999999999999999999999999999999999997
Q ss_pred CC
Q 019542 238 PR 239 (339)
Q Consensus 238 ~~ 239 (339)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 342
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.58 E-value=2.6e-15 Score=125.02 Aligned_cols=80 Identities=30% Similarity=0.600 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
.++|||+|||+++++++|+++|++||.|..+++..+..+|+++|||||+|.+.++|.+|+. +++..++|+.|+|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5689999999999999999999999999999999998899999999999999999999998 699999999999999976
Q ss_pred C
Q 019542 239 R 239 (339)
Q Consensus 239 ~ 239 (339)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 343
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=4.9e-15 Score=110.83 Aligned_cols=77 Identities=27% Similarity=0.383 Sum_probs=62.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcc--cCCceee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYD--IDGRLLT 232 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~--l~gr~l~ 232 (339)
.+++..+|||||||+++++++|+++|++||.|..++++++ ++|||||+|.+.++|.+ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 4556789999999999999999999999999999999863 79999999999999984 35544 5699999
Q ss_pred eeccCCCC
Q 019542 233 VNKAAPRG 240 (339)
Q Consensus 233 V~~a~~~~ 240 (339)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99987654
No 344
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=4.7e-15 Score=110.07 Aligned_cols=72 Identities=24% Similarity=0.549 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcc----C-------CeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcc
Q 019542 157 PEDAKLFVGNLPYDVDSEKLAMLFEKA----G-------TVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYD 225 (339)
Q Consensus 157 ~~~~~vfVgnLp~~~t~e~L~~~F~~~----G-------~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~ 225 (339)
.+.++|||+|||+++++++|+++|++| | .|..+++.. .+|||||+|.+.++|.+|+ .+|+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~------~kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS------SSSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC------CCcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 346899999999999999999999999 8 899988863 3899999999999999999 889999
Q ss_pred cCCceeeeec
Q 019542 226 IDGRLLTVNK 235 (339)
Q Consensus 226 l~gr~l~V~~ 235 (339)
+.|+.|+|.+
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 345
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.9e-15 Score=114.93 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=69.8
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCccc-----CC
Q 019542 156 PPEDAKLFV--GNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI-----DG 228 (339)
Q Consensus 156 ~~~~~~vfV--gnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l-----~g 228 (339)
..+.++||| ||||+++++++|+++|++||.|..|.+.. .+|||||+|.+.++|.+|+..|||..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345789999 77999999999999999999999988753 379999999999999999999999987 68
Q ss_pred ceeeeeccCCCC
Q 019542 229 RLLTVNKAAPRG 240 (339)
Q Consensus 229 r~l~V~~a~~~~ 240 (339)
++|.|.++...+
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 999999886544
No 346
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=6.3e-15 Score=115.69 Aligned_cols=77 Identities=23% Similarity=0.326 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCce-----ee
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRL-----LT 232 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~-----l~ 232 (339)
..++|||+|||+++++++|+++|.+||.|..|.|+.+ |||||+|.+.++|.+|+..||+..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4689999999999999999999999999999998754 89999999999999999999999999998 67
Q ss_pred eeccCCCCC
Q 019542 233 VNKAAPRGT 241 (339)
Q Consensus 233 V~~a~~~~~ 241 (339)
|..+.+...
T Consensus 88 v~~~~~~~~ 96 (115)
T 3beg_B 88 VKVDGPRSP 96 (115)
T ss_dssp EEECC----
T ss_pred eccCCCCCC
Confidence 766665443
No 347
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=1.4e-14 Score=131.15 Aligned_cols=81 Identities=22% Similarity=0.463 Sum_probs=74.8
Q ss_pred CCCceEEecCCCccccHHHHH----HHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 019542 251 EPGFRIYVGNLPWEVDNARLE----QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 326 (339)
Q Consensus 251 ~~~~~l~V~nLp~~~tee~L~----~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~ 326 (339)
.+.++|||+|||+.+++++|+ ++|+.||.|..|++.+ +|+++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 456699999999999999976 8999999999999875 688999999999999999999999999999999999
Q ss_pred EEEecccc
Q 019542 327 VNVAEDRQ 334 (339)
Q Consensus 327 V~~a~~~~ 334 (339)
|.|++.+.
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99997655
No 348
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.8e-14 Score=111.41 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=70.7
Q ss_pred CCCCceEEecCCCccc-----------cHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 019542 250 FEPGFRIYVGNLPWEV-----------DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ 318 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~-----------tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~ 318 (339)
..+..+|+|+||.... ++++|+.+|++||.|..|.| .++ .++|||||+|.+.++|.+|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 3455699999994433 26899999999999999966 443 37999999999999999999999999
Q ss_pred eeCCeEEEEEEecccccC
Q 019542 319 NLDGRAIRVNVAEDRQRR 336 (339)
Q Consensus 319 ~l~gr~l~V~~a~~~~~~ 336 (339)
.++||.|+|.|+.++.+.
T Consensus 88 ~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp EETTEECEEEECCSCCCS
T ss_pred EECCcEEEEEEeCCCCCc
Confidence 999999999999886553
No 349
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.55 E-value=1.2e-14 Score=112.19 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=71.4
Q ss_pred CCceEEecCC--Cccc--------cHHHHHHHHhccCceEEEEEeeeCCC--CCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 019542 252 PGFRIYVGNL--PWEV--------DNARLEQVFSEHGKVVNARVVYDRET--GRSRGFGFVTMSSETELNDAIAALDGQN 319 (339)
Q Consensus 252 ~~~~l~V~nL--p~~~--------tee~L~~~F~~~G~V~~v~i~~d~~~--~~~kg~afV~F~~~e~A~~Al~~l~g~~ 319 (339)
|.+.|.|.|+ |..+ ..++|++.|++||.|.+|.|++++.+ ++++|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568999998 3333 34799999999999999999988755 4689999999999999999999999999
Q ss_pred eCCeEEEEEEeccc
Q 019542 320 LDGRAIRVNVAEDR 333 (339)
Q Consensus 320 l~gr~l~V~~a~~~ 333 (339)
++||.|+|.|+.+.
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998653
No 350
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=2.9e-14 Score=109.92 Aligned_cols=82 Identities=18% Similarity=0.058 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHHhccCCeeEEEEEecCCC-CCcccEEEEEeccHHHHHHHHHHhCCcccCCce
Q 019542 157 PEDAKLFVGNLPY-----DVDSEKLAMLFEKAGTVEIAEVIYNRET-DRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRL 230 (339)
Q Consensus 157 ~~~~~vfVgnLp~-----~~t~e~L~~~F~~~G~i~~v~~~~~~~~-g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~ 230 (339)
.++++|+|+||.. +-++++|+++|++||.|..+++++++.+ ++++|||||+|.+.++|.+|+..|||..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999973 3378999999999999999999988764 689999999999999999999999999999999
Q ss_pred eeeeccCC
Q 019542 231 LTVNKAAP 238 (339)
Q Consensus 231 l~V~~a~~ 238 (339)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99998854
No 351
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.54 E-value=4.4e-14 Score=116.74 Aligned_cols=78 Identities=19% Similarity=0.163 Sum_probs=70.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCC--ceeeeecc
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDG--RLLTVNKA 236 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~g--r~l~V~~a 236 (339)
-.+|||+|||+.+++++|+++|++||.|..|++... +.+|||||+|.+.++|.+|+..|||..|.| +.|+|.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 356899999999999999999999999999998643 358999999999999999999999999965 99999999
Q ss_pred CCCC
Q 019542 237 APRG 240 (339)
Q Consensus 237 ~~~~ 240 (339)
.++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8764
No 352
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.54 E-value=2.9e-14 Score=113.54 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=69.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccE-EEEEeccHHHHHHHHHHhCCcccCC--ceeeeecc
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGF-GFVTMSTVEEAEKAVEMFHRYDIDG--RLLTVNKA 236 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~-afV~f~~~e~a~~Al~~~~~~~l~g--r~l~V~~a 236 (339)
..|||+||++.+|+++|+.+|++||.|..|++... .+|| |||+|.+.++|.+|+..|||..|.| +.|+|.++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 46789999999999999999999999999988753 3688 9999999999999999999999988 99999999
Q ss_pred CCCC
Q 019542 237 APRG 240 (339)
Q Consensus 237 ~~~~ 240 (339)
.+..
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 7664
No 353
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.7e-15 Score=109.69 Aligned_cols=78 Identities=23% Similarity=0.329 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
+.++|||+|||+++++++|+++|++||.|..++++.+ ++|||||+|.+.++|++|+. ....+.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 5689999999999999999999999999999998753 78999999999999986533 2345699999999998
Q ss_pred CCCCC
Q 019542 238 PRGTQ 242 (339)
Q Consensus 238 ~~~~~ 242 (339)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77554
No 354
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.53 E-value=6.8e-15 Score=113.34 Aligned_cols=72 Identities=17% Similarity=0.315 Sum_probs=65.5
Q ss_pred ecCCCccccHHHHHHHH------------hccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 019542 258 VGNLPWEVDNARLEQVF------------SEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 325 (339)
Q Consensus 258 V~nLp~~~tee~L~~~F------------~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l 325 (339)
+.|||+.+++++|++.| ++||.|..|.|+++. +++++|||||+|.+.++|.+|+..|||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 67888888888877766 999999999999885 48899999999999999999999999999999999
Q ss_pred EEEEe
Q 019542 326 RVNVA 330 (339)
Q Consensus 326 ~V~~a 330 (339)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 355
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.52 E-value=8.6e-14 Score=110.22 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=67.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccE-EEEEeccHHHHHHHHHHhCCcccCC--ceeeeeccC
Q 019542 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGF-GFVTMSTVEEAEKAVEMFHRYDIDG--RLLTVNKAA 237 (339)
Q Consensus 161 ~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~-afV~f~~~e~a~~Al~~~~~~~l~g--r~l~V~~a~ 237 (339)
.|||+|||+.+++++|+.+|++||.|..|++... .|| |||+|.+.++|..|+..|||..|.| +.|+|.++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4679999999999999999999999999998642 286 9999999999999999999999987 699999997
Q ss_pred CCC
Q 019542 238 PRG 240 (339)
Q Consensus 238 ~~~ 240 (339)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 664
No 356
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.52 E-value=3.2e-14 Score=121.91 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=72.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 238 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~~ 238 (339)
.++|||+|||+++++++|+++|++||.|..|+++++.. |+++|||||+|.+.++|.+|+..+ +..++|+.|+|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 57999999999999999999999999999999998764 999999999999999999999874 5689999999998765
Q ss_pred C
Q 019542 239 R 239 (339)
Q Consensus 239 ~ 239 (339)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 357
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=4.4e-14 Score=111.82 Aligned_cols=79 Identities=24% Similarity=0.291 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
.+.+.++|||+|| ++++++|+.+|++||.|..|.+. +++|||||+|.+.++|.+|+..+++..+.|+.|+|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999995 79999999999999999999885 578999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019542 235 KAAPRGT 241 (339)
Q Consensus 235 ~a~~~~~ 241 (339)
++.+...
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9987654
No 358
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.52 E-value=5e-14 Score=110.82 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=70.9
Q ss_pred CCceEEecCCCc--cc---cHHHHHHHHhccCceEEEEEeeeCC----CCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 019542 252 PGFRIYVGNLPW--EV---DNARLEQVFSEHGKVVNARVVYDRE----TGRSRGFGFVTMSSETELNDAIAALDGQNLDG 322 (339)
Q Consensus 252 ~~~~l~V~nLp~--~~---tee~L~~~F~~~G~V~~v~i~~d~~----~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~g 322 (339)
+.++|+|+|+-. .+ -+++|++.|++||.|..|.|++++. +++++|+|||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 345899999842 22 3689999999999999999999864 46788999999999999999999999999999
Q ss_pred eEEEEEEecc
Q 019542 323 RAIRVNVAED 332 (339)
Q Consensus 323 r~l~V~~a~~ 332 (339)
|.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 359
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.51 E-value=2.3e-14 Score=126.11 Aligned_cols=78 Identities=22% Similarity=0.408 Sum_probs=73.0
Q ss_pred CCCceEEecCCCc-cccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 251 EPGFRIYVGNLPW-EVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 251 ~~~~~l~V~nLp~-~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
.+.++|||+|||+ .+++++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+|+..|||..+.|+.|+|.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4556999999999 99999999999999999999998774 89999999999999999999999999999999999
Q ss_pred eccc
Q 019542 330 AEDR 333 (339)
Q Consensus 330 a~~~ 333 (339)
+..+
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9865
No 360
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.48 E-value=2.5e-14 Score=122.69 Aligned_cols=76 Identities=22% Similarity=0.425 Sum_probs=71.5
Q ss_pred CceEEecCCCc-cccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 253 GFRIYVGNLPW-EVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 253 ~~~l~V~nLp~-~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+++|||+|||+ .+++++|+++|+.||.|..|++++++ +|||||+|.+.++|.+|+..|||..+.|+.|+|.|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 35899999999 99999999999999999999998764 7899999999999999999999999999999999998
Q ss_pred cc
Q 019542 332 DR 333 (339)
Q Consensus 332 ~~ 333 (339)
.+
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 361
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=1e-13 Score=124.32 Aligned_cols=78 Identities=31% Similarity=0.565 Sum_probs=71.9
Q ss_pred CCCCceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 019542 250 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 329 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~ 329 (339)
..+.++|||+|||+.+|+++|+.+|+.||.|..|.+.+ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.|
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 44567999999999999999999999999999999854 489999999999999999999999999999999999
Q ss_pred eccc
Q 019542 330 AEDR 333 (339)
Q Consensus 330 a~~~ 333 (339)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 8754
No 362
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=8.8e-13 Score=102.80 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=72.1
Q ss_pred CCCCCCCeEEEcCCCCCCC-----------HHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhC
Q 019542 154 VEPPEDAKLFVGNLPYDVD-----------SEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFH 222 (339)
Q Consensus 154 ~~~~~~~~vfVgnLp~~~t-----------~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~ 222 (339)
..+.+.++|+|.||..... +++|+++|++||.|..|.| .+. .++|||||+|.+.++|.+|+..||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 4566789999999954432 5899999999999999966 433 379999999999999999999999
Q ss_pred CcccCCceeeeeccCCCCC
Q 019542 223 RYDIDGRLLTVNKAAPRGT 241 (339)
Q Consensus 223 ~~~l~gr~l~V~~a~~~~~ 241 (339)
+..++||.|+|.++.++..
T Consensus 86 g~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TCEETTEECEEEECCSCCC
T ss_pred CCEECCcEEEEEEeCCCCC
Confidence 9999999999999977654
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.44 E-value=2.2e-13 Score=119.84 Aligned_cols=80 Identities=21% Similarity=0.339 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCccc
Q 019542 156 PPEDAKLFVGNLPYDV---------DSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI 226 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~---------t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l 226 (339)
....++|||||||..+ ++++|+.+|++||.|..|+++. .+|||||+|.+.++|+.|+..|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3467899999999998 7999999999999999999984 489999999999999999999999999
Q ss_pred ------------CCceeeeeccCCCCC
Q 019542 227 ------------DGRLLTVNKAAPRGT 241 (339)
Q Consensus 227 ------------~gr~l~V~~a~~~~~ 241 (339)
.|+.|.|.+|...+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.40 E-value=6.2e-13 Score=102.43 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=71.6
Q ss_pred CCCCeEEEcCC--CCCC--------CHHHHHHHHhccCCeeEEEEEecCCC--CCcccEEEEEeccHHHHHHHHHHhCCc
Q 019542 157 PEDAKLFVGNL--PYDV--------DSEKLAMLFEKAGTVEIAEVIYNRET--DRSRGFGFVTMSTVEEAEKAVEMFHRY 224 (339)
Q Consensus 157 ~~~~~vfVgnL--p~~~--------t~e~L~~~F~~~G~i~~v~~~~~~~~--g~~kg~afV~f~~~e~a~~Al~~~~~~ 224 (339)
.++++|.|.|+ |.+. .+++|++.|++||.|..|+|+++..+ ++++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36789999998 4444 34789999999999999999988765 478999999999999999999999999
Q ss_pred ccCCceeeeeccCC
Q 019542 225 DIDGRLLTVNKAAP 238 (339)
Q Consensus 225 ~l~gr~l~V~~a~~ 238 (339)
.++||.|+|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998753
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=2.1e-13 Score=104.91 Aligned_cols=72 Identities=26% Similarity=0.269 Sum_probs=64.6
Q ss_pred EcCCCCCCCHHHHHHHH------------hccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCcee
Q 019542 164 VGNLPYDVDSEKLAMLF------------EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLL 231 (339)
Q Consensus 164 VgnLp~~~t~e~L~~~F------------~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l 231 (339)
+.|||+.+++++|+++| ++||.|..|++.++.. ++++|||||.|.+.++|.+|+..+||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 67788888888877776 9999999999988765 7899999999999999999999999999999999
Q ss_pred eeecc
Q 019542 232 TVNKA 236 (339)
Q Consensus 232 ~V~~a 236 (339)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.2e-12 Score=98.25 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=59.4
Q ss_pred ccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecccccC
Q 019542 263 WEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 336 (339)
Q Consensus 263 ~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~~~~~ 336 (339)
..+++++|+.+|++||.|..|+|+ ++++|||||+|.+.++|.+|+..++ .+.|+.|+|.|+++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCCC
Confidence 468999999999999999999997 4679999999999999999999744 468999999999877643
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.36 E-value=1.4e-12 Score=102.57 Aligned_cols=81 Identities=17% Similarity=0.138 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHHhccCCeeEEEEEecCC----CCCcccEEEEEeccHHHHHHHHHHhCCcccC
Q 019542 157 PEDAKLFVGNLPY-----DVDSEKLAMLFEKAGTVEIAEVIYNRE----TDRSRGFGFVTMSTVEEAEKAVEMFHRYDID 227 (339)
Q Consensus 157 ~~~~~vfVgnLp~-----~~t~e~L~~~F~~~G~i~~v~~~~~~~----~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~ 227 (339)
+++++|+|.|+-. +-.+++|++.|++||.|..|.|+++.. +++++|||||+|.+.++|.+|+..|||..++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4689999999942 224789999999999999999998765 4678899999999999999999999999999
Q ss_pred CceeeeeccC
Q 019542 228 GRLLTVNKAA 237 (339)
Q Consensus 228 gr~l~V~~a~ 237 (339)
||.|+|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999875
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.33 E-value=1.4e-12 Score=101.90 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=65.5
Q ss_pred CCceEEecCCCcc----------ccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 019542 252 PGFRIYVGNLPWE----------VDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD 321 (339)
Q Consensus 252 ~~~~l~V~nLp~~----------~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~ 321 (339)
+.+.|.|.|+=.. --+++|++.|++||.|..|.|.++. ++|+|||+|.+.++|.+|+..|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3457888887322 2347899999999999999986552 5999999999999999999999999999
Q ss_pred CeEEEEEEecc
Q 019542 322 GRAIRVNVAED 332 (339)
Q Consensus 322 gr~l~V~~a~~ 332 (339)
||.|+|.|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999864
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=2.8e-12 Score=118.61 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=65.8
Q ss_pred CCCCceEEecC--CCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee---CCe-
Q 019542 250 FEPGFRIYVGN--LPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL---DGR- 323 (339)
Q Consensus 250 ~~~~~~l~V~n--Lp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l---~gr- 323 (339)
..|..+|||+| |++.+++++|+++|++||.|..|.++. +||||||+|.+.++|.+|+..|||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34566999999 578999999999999999999987742 489999999999999999999999987 355
Q ss_pred -EEEEEEec
Q 019542 324 -AIRVNVAE 331 (339)
Q Consensus 324 -~l~V~~a~ 331 (339)
.|.|.|++
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 68888875
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.1e-10 Score=88.82 Aligned_cols=77 Identities=21% Similarity=0.120 Sum_probs=64.6
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCcee
Q 019542 159 DAKLFVGNLP-------YDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLL 231 (339)
Q Consensus 159 ~~~vfVgnLp-------~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l 231 (339)
..+|.|.-.+ .++++++|+++|++||.|..|+|+ ++++|||||+|.+.++|..|+..+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4466666544 468999999999999999999997 47899999999999999999997544 689999
Q ss_pred eeeccCCCCCC
Q 019542 232 TVNKAAPRGTQ 242 (339)
Q Consensus 232 ~V~~a~~~~~~ 242 (339)
+|.++..+...
T Consensus 83 ~V~~a~~~~~~ 93 (100)
T 2d9o_A 83 KISWLEGQPQD 93 (100)
T ss_dssp EEECSSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99998776543
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.20 E-value=3.4e-11 Score=111.39 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=66.2
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCccc---CCc
Q 019542 155 EPPEDAKLFVGN--LPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI---DGR 229 (339)
Q Consensus 155 ~~~~~~~vfVgn--Lp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l---~gr 229 (339)
...+..+||||| |++.+++++|+++|++||.|..|.+.. .||||||+|.+.++|++|++.|||..+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 456788999999 579999999999999999999887742 579999999999999999999999877 355
Q ss_pred --eeeeeccC
Q 019542 230 --LLTVNKAA 237 (339)
Q Consensus 230 --~l~V~~a~ 237 (339)
.|.|.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57777764
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.14 E-value=1.6e-10 Score=90.06 Aligned_cols=78 Identities=19% Similarity=0.173 Sum_probs=66.5
Q ss_pred CCCCCeEEEcCCCCCC----------CHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcc
Q 019542 156 PPEDAKLFVGNLPYDV----------DSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYD 225 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~----------t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~ 225 (339)
+.++++|.+.|+=-.. .+++|++.|++||.|..|.+.++. .+|||||.|.+.++|.+|+..|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567889999885322 246789999999999999886542 59999999999999999999999999
Q ss_pred cCCceeeeeccC
Q 019542 226 IDGRLLTVNKAA 237 (339)
Q Consensus 226 l~gr~l~V~~a~ 237 (339)
++||.|+|.++.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999875
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.3e-10 Score=90.91 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=68.9
Q ss_pred CCCCCCceEEecCCCcc-ccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CCeeCCe
Q 019542 248 RVFEPGFRIYVGNLPWE-VDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS-ETELNDAIAALD--GQNLDGR 323 (339)
Q Consensus 248 ~~~~~~~~l~V~nLp~~-~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~-~e~A~~Al~~l~--g~~l~gr 323 (339)
....+++.|||+||++. ++.++|+++|+.||.|.+|.+.++.. .|||+|.+ ..+|..|+..|+ |..|.|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 34667889999999999 99999999999999999999987743 59999999 899999999995 6788999
Q ss_pred EEEEEEec
Q 019542 324 AIRVNVAE 331 (339)
Q Consensus 324 ~l~V~~a~ 331 (339)
.+++.+..
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 98887754
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=2.5e-10 Score=83.92 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=63.2
Q ss_pred CCCceEEecCCC----ccccH----HHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 019542 251 EPGFRIYVGNLP----WEVDN----ARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG 322 (339)
Q Consensus 251 ~~~~~l~V~nLp----~~~te----e~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~g 322 (339)
+|..||+|.-.+ ..+-. .+|.+.|..||.|..++|+.++ +||+|.+.++|.+|+. |||..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 445588887766 22323 6799999999999999998763 8999999999999999 99999999
Q ss_pred eEEEEEEecccc
Q 019542 323 RAIRVNVAEDRQ 334 (339)
Q Consensus 323 r~l~V~~a~~~~ 334 (339)
|.|+|+++.+.=
T Consensus 76 r~LkV~lkt~dW 87 (91)
T 2dnr_A 76 RTITIALKSPSG 87 (91)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEeCCCCc
Confidence 999999998653
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=7.5e-10 Score=81.39 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCCC----CCCH----HHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCC
Q 019542 157 PEDAKLFVGNLPY----DVDS----EKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDG 228 (339)
Q Consensus 157 ~~~~~vfVgnLp~----~~t~----e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~g 228 (339)
|+..||+|..+|. ..-. .+|.+.|.+||.|..++++.+. +||+|.+.++|.+|+. +||..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 5678999998872 3333 6799999999999999998643 8999999999999999 89999999
Q ss_pred ceeeeeccCCC
Q 019542 229 RLLTVNKAAPR 239 (339)
Q Consensus 229 r~l~V~~a~~~ 239 (339)
|.|+|..+.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999988754
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.96 E-value=1.4e-09 Score=94.75 Aligned_cols=68 Identities=21% Similarity=0.257 Sum_probs=61.9
Q ss_pred ccHHHHHHHHhccCceEEEEEeeeCC----CCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecc
Q 019542 265 VDNARLEQVFSEHGKVVNARVVYDRE----TGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 332 (339)
Q Consensus 265 ~tee~L~~~F~~~G~V~~v~i~~d~~----~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~~ 332 (339)
-.+++|+..|++||.|..+.|.++.. +++++|++||+|.+.++|.+|+..|||..++||.|+|.|+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 46689999999999999999997654 448999999999999999999999999999999999999853
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2.3e-09 Score=83.78 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=66.1
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEecc-HHHHHHHHHHhC--CcccCCce
Q 019542 155 EPPEDAKLFVGNLPYD-VDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMST-VEEAEKAVEMFH--RYDIDGRL 230 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~-~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~-~e~a~~Al~~~~--~~~l~gr~ 230 (339)
.-++...|+|+||+++ ++.++|+++|++||.|.+|.+..+.. .|||.|.+ ..+|..|+..++ +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4467889999999999 99999999999999999999976554 59999999 899999999984 67788888
Q ss_pred eeeecc
Q 019542 231 LTVNKA 236 (339)
Q Consensus 231 l~V~~a 236 (339)
+++...
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 887644
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.2e-09 Score=80.76 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=61.7
Q ss_pred CCCCceEEecCCCcc-----ccH----HHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 019542 250 FEPGFRIYVGNLPWE-----VDN----ARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL 320 (339)
Q Consensus 250 ~~~~~~l~V~nLp~~-----~te----e~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l 320 (339)
.+|..||+|.-++.. +-. .+|.+.|..||.|..++|..++ +||+|.+.++|.+|+. |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 345569999888732 222 5699999999999999998773 9999999999999999 999999
Q ss_pred CCeEEEEEEec
Q 019542 321 DGRAIRVNVAE 331 (339)
Q Consensus 321 ~gr~l~V~~a~ 331 (339)
+||.|+|++..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999999843
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=2.6e-09 Score=78.91 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=63.7
Q ss_pred CCCCCCeEEEcCCCCC-----CCH----HHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcc
Q 019542 155 EPPEDAKLFVGNLPYD-----VDS----EKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYD 225 (339)
Q Consensus 155 ~~~~~~~vfVgnLp~~-----~t~----e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~ 225 (339)
--|+..||+|..++.+ +-. .+|.+.|.+||.|..++++.+. +||+|.+.++|.+|+. ++|..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3467789999998743 222 5689999999999999998664 9999999999999999 89999
Q ss_pred cCCceeeeeccCC
Q 019542 226 IDGRLLTVNKAAP 238 (339)
Q Consensus 226 l~gr~l~V~~a~~ 238 (339)
++||.|+|.+..+
T Consensus 82 v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 82 VKGRAVKISGPSS 94 (95)
T ss_dssp ETTEEEEEECCCC
T ss_pred eCCeEEEEeccCC
Confidence 9999999987653
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.69 E-value=4e-08 Score=85.53 Aligned_cols=67 Identities=16% Similarity=0.100 Sum_probs=60.6
Q ss_pred CCHHHHHHHHhccCCeeEEEEEecCC----CCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeeeccC
Q 019542 171 VDSEKLAMLFEKAGTVEIAEVIYNRE----TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 237 (339)
Q Consensus 171 ~t~e~L~~~F~~~G~i~~v~~~~~~~----~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~~a~ 237 (339)
-.+++|+..|++||.|..+.++++.. +++++|++||+|.+.++|.+|+..|||..++||.|+|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 35688999999999999999986544 45899999999999999999999999999999999999875
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.57 E-value=2.1e-07 Score=70.14 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=64.9
Q ss_pred CceEEecCCCccccHHHHHHHHhcc-----CceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEH-----GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 327 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~-----G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V 327 (339)
.++|-+-|||..+++..|+.+..++ |.+..+.+..| .|-|+|+|.+...|-+|.-+|+|..|.||+|++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 3489999999999999999999999 99999988766 456999999999999999999999999999998
Q ss_pred EE
Q 019542 328 NV 329 (339)
Q Consensus 328 ~~ 329 (339)
.=
T Consensus 95 gT 96 (117)
T 2l9w_A 95 GT 96 (117)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.8e-05 Score=59.09 Aligned_cols=88 Identities=25% Similarity=0.351 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhc-----cCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceee
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEK-----AGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~-----~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~ 232 (339)
...+|.|.|||.++.++.|.-+|.. -|.|..+.... +-|+|+|.+...|++.|+. ..+.|+|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 3578999999999999999999986 25787777642 4699999999999999986 58899999999
Q ss_pred eeccCCCCCCCCCCCCCCCCCceEEecCCCcccc
Q 019542 233 VNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVD 266 (339)
Q Consensus 233 V~~a~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t 266 (339)
|....+.... +|++.|||..++
T Consensus 78 V~P~~~~~~~------------r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPRAPA------------RLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCCCCC------------CCCCCSCCCCCC
T ss_pred EEcCCCCCcc------------eEeeecCCCCCC
Confidence 9886655443 789999988764
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=6.7e-05 Score=56.53 Aligned_cols=71 Identities=7% Similarity=0.137 Sum_probs=64.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc-----CCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceee
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKA-----GTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 232 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~-----G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~ 232 (339)
..++|-+-|||-.++...|+.+..++ |.+..+.+..+- |=|+|+|.+...|-+|.-.++|..|.||.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46899999999999999999999999 999998887553 3599999999999999988999999999999
Q ss_pred ee
Q 019542 233 VN 234 (339)
Q Consensus 233 V~ 234 (339)
+-
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 86
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=4.9e-05 Score=57.00 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=63.2
Q ss_pred CceEEecCCCccc-c----HHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 019542 253 GFRIYVGNLPWEV-D----NARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 327 (339)
Q Consensus 253 ~~~l~V~nLp~~~-t----ee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V 327 (339)
.++|+|.||+..+ . .+.++.+|..|+++.....++. =.-..|.|.+.++|.+|...||+..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3589999998765 2 3678999999998888766643 224789999999999999999999999999999
Q ss_pred EEecccc
Q 019542 328 NVAEDRQ 334 (339)
Q Consensus 328 ~~a~~~~ 334 (339)
.|+++-.
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9997543
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.61 E-value=0.00022 Score=52.46 Aligned_cols=77 Identities=10% Similarity=0.121 Sum_probs=61.6
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCC--cceEEEEEeCCHHHHHHHHHHhCCCeeC---Ce--EEE
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGR--SRGFGFVTMSSETELNDAIAALDGQNLD---GR--AIR 326 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~--~kg~afV~F~~~e~A~~Al~~l~g~~l~---gr--~l~ 326 (339)
++|.|++||+.+|++++++.++..+.+....++....+.. .-..|||.|.+.+++......++|..+. |. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 3799999999999999999999999888887776643322 3456999999999999999999999873 22 334
Q ss_pred EEEe
Q 019542 327 VNVA 330 (339)
Q Consensus 327 V~~a 330 (339)
|.+|
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6665
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.46 E-value=0.00048 Score=50.63 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=56.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCC--cccEEEEEeccHHHHHHHHHHhCCcccC
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDR--SRGFGFVTMSTVEEAEKAVEMFHRYDID 227 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~--~kg~afV~f~~~e~a~~Al~~~~~~~l~ 227 (339)
.+|.|++||+.+|++++.+.++.+..+.....+..+.+.+ .-.-|||.|.+.+++......++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4789999999999999999999998887777665554432 2345999999999999999999998773
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=0.0016 Score=48.60 Aligned_cols=73 Identities=22% Similarity=0.304 Sum_probs=59.9
Q ss_pred CceEEecCCCccccHHHHHHHHhcc-----CceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEH-----GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 327 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~-----G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V 327 (339)
+.+|.|.|||..++++.|.-+|++- |.|..+.... +-|+|+|.+...|.+.|+ -..+.|.|..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEEE
Confidence 4589999999999999999999872 5788887642 469999999999999998 3478889999888
Q ss_pred EEecccc
Q 019542 328 NVAEDRQ 334 (339)
Q Consensus 328 ~~a~~~~ 334 (339)
.-.-++.
T Consensus 79 ~P~~~~~ 85 (104)
T 2dhx_A 79 RPAPPRA 85 (104)
T ss_dssp EECCCCC
T ss_pred EcCCCCC
Confidence 7654443
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.19 E-value=0.0016 Score=48.78 Aligned_cols=75 Identities=16% Similarity=0.084 Sum_probs=62.2
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeee
Q 019542 159 DAKLFVGNLPYDV-D----SEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 233 (339)
Q Consensus 159 ~~~vfVgnLp~~~-t----~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V 233 (339)
..+|+|.||+.++ . .+.++.+|..|+++......+.-. -.-|.|.+.++|.+|-..|++..++|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999999876 2 367899999999887766654322 3689999999999999999999999999999
Q ss_pred eccCCC
Q 019542 234 NKAAPR 239 (339)
Q Consensus 234 ~~a~~~ 239 (339)
..+.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998743
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.89 E-value=0.0056 Score=47.07 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=58.5
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC-eEEEEEEec
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG-RAIRVNVAE 331 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~g-r~l~V~~a~ 331 (339)
.+-|.|-+.|... ...|...|+.||.|...... ....+..|+|.++.+|.+||. .||..|+| -.|-|..+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 4578899999885 67788999999999988762 124689999999999999999 69999975 677887764
No 390
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.77 E-value=0.0018 Score=47.87 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=55.9
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCC--cceEEEEEeCCHHHHHHHHHHhCCCeeC---Ce--EEEE
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGR--SRGFGFVTMSSETELNDAIAALDGQNLD---GR--AIRV 327 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~--~kg~afV~F~~~e~A~~Al~~l~g~~l~---gr--~l~V 327 (339)
+|.|+.||+.+|++++.+.++..-.+....++....+.. .-..|||.|.+.++........+|..+. |. ...|
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~V 90 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVV 90 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEE
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEE
Confidence 799999999999999999998876655444433322211 1245899999999999999999998873 22 4556
Q ss_pred EEe
Q 019542 328 NVA 330 (339)
Q Consensus 328 ~~a 330 (339)
.+|
T Consensus 91 E~A 93 (97)
T 2l08_A 91 EFA 93 (97)
T ss_dssp EEC
T ss_pred Eec
Confidence 665
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.53 E-value=0.0087 Score=44.07 Aligned_cols=53 Identities=25% Similarity=0.357 Sum_probs=43.5
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD 316 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~ 316 (339)
.++| +.|..+...||.++|++||.| .|+.+-| ..|||.|.+++.|..|+..++
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999954 3445433 379999999999999999763
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.51 E-value=0.0021 Score=47.51 Aligned_cols=70 Identities=10% Similarity=0.086 Sum_probs=51.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCC--cccEEEEEeccHHHHHHHHHHhCCcccC
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDR--SRGFGFVTMSTVEEAEKAVEMFHRYDID 227 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~--~kg~afV~f~~~e~a~~Al~~~~~~~l~ 227 (339)
.+-+|.|++||+.+|++++.+.++.+-.+.+...+....+.+ .-.-|||.|.+.+++....+.++|+.+-
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 456899999999999999888887765544333222222211 1234999999999999999999987763
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.43 E-value=0.011 Score=43.63 Aligned_cols=58 Identities=28% Similarity=0.402 Sum_probs=46.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhC
Q 019542 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFH 222 (339)
Q Consensus 156 ~~~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~ 222 (339)
+.....++| +.|..+...||.++|+.||.|. |+.+-+ ..|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 334556777 9999999999999999999653 444432 259999999999999999763
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.40 E-value=0.0099 Score=45.67 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=58.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCC-ceeeeecc
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDG-RLLTVNKA 236 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~g-r~l~V~~a 236 (339)
....|.|-+.|... ...+..+|.+||.|...... ....+-.|.|.+..+|++||.. ||..++| -.|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 35688898998885 67788899999999887761 2356999999999999999998 9998875 66667665
Q ss_pred C
Q 019542 237 A 237 (339)
Q Consensus 237 ~ 237 (339)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.21 E-value=0.0066 Score=44.86 Aligned_cols=53 Identities=25% Similarity=0.358 Sum_probs=43.6
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD 316 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~ 316 (339)
.++| +.|..|...||.++|++||.| .|+.+-| ..|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3445 999999999999999999943 4555544 379999999999999999775
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.82 E-value=0.019 Score=42.38 Aligned_cols=54 Identities=26% Similarity=0.337 Sum_probs=44.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhC
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFH 222 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~ 222 (339)
..++| +.|..+.-.+|..+|+.||.| .|+.+-+- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 35666 999999999999999999944 45554332 59999999999999999864
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.81 E-value=0.01 Score=46.20 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=56.1
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEE-EEEeeeC------------CCC-CcceEEEEEeCCHHHHHHHHHHhCCCee
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVN-ARVVYDR------------ETG-RSRGFGFVTMSSETELNDAIAALDGQNL 320 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~-v~i~~d~------------~~~-~~kg~afV~F~~~e~A~~Al~~l~g~~l 320 (339)
-|.|=+.|... ...+.+.|++||.|.. ....++. -.+ .+.++..|+|.+..+|.+||. .||..|
T Consensus 9 ~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii 86 (132)
T 3p3d_A 9 AILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVF 86 (132)
T ss_dssp EEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEE
T ss_pred EEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEe
Confidence 57777887664 4577889999999866 2111100 001 135688999999999999999 799999
Q ss_pred CCeEEEEEEecc
Q 019542 321 DGRAIRVNVAED 332 (339)
Q Consensus 321 ~gr~l~V~~a~~ 332 (339)
+|..|-|..+.+
T Consensus 87 ~G~mIGV~Py~~ 98 (132)
T 3p3d_A 87 NGVLLGVIPYTK 98 (132)
T ss_dssp TTEECEEEECCH
T ss_pred CcEEEEEEECCH
Confidence 999999888754
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.25 E-value=0.026 Score=53.81 Aligned_cols=57 Identities=9% Similarity=0.100 Sum_probs=42.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHH
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 220 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~ 220 (339)
..++|||. .|..+++.+|.++|++||+|..+.+..+. .-||.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 45799998 79999999999999999999998886422 36999999999999977654
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.85 E-value=0.031 Score=53.26 Aligned_cols=54 Identities=9% Similarity=0.151 Sum_probs=40.7
Q ss_pred ceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 019542 254 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 313 (339)
Q Consensus 254 ~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~ 313 (339)
++|+|. .|...++.+|.++|+.||.|.++....+. .-||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 489997 68899999999999999999999876542 3699999999999987765
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.76 E-value=0.1 Score=40.55 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=52.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEec---------CCCC-----CcccEEEEEeccHHHHHHHHHHhCCcc
Q 019542 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYN---------RETD-----RSRGFGFVTMSTVEEAEKAVEMFHRYD 225 (339)
Q Consensus 160 ~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~---------~~~g-----~~kg~afV~f~~~e~a~~Al~~~~~~~ 225 (339)
..|.|=+.|.+.. ..+..+|++||.|..-.-... ..+. ...++..|.|.+..+|.+||.. ||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 4566667766654 557789999999865211000 0001 1356789999999999999998 9999
Q ss_pred cCCceeeeeccC
Q 019542 226 IDGRLLTVNKAA 237 (339)
Q Consensus 226 l~gr~l~V~~a~ 237 (339)
|+|..|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999877777653
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.04 E-value=4 Score=39.30 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=43.5
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 317 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g 317 (339)
.++|+ +|..|...+|.++|+.||.| .|+.+- ...|||.|.+.+.|..++..++.
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHHh
Confidence 56665 99999999999999999964 444432 33699999999999999998854
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=75.32 E-value=9 Score=36.84 Aligned_cols=56 Identities=27% Similarity=0.316 Sum_probs=44.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCC
Q 019542 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHR 223 (339)
Q Consensus 159 ~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~ 223 (339)
...++|+ +|..+...+|.++|+.||.+ .|+.+- ...|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHHh
Confidence 4567776 88999999999999999965 444432 23599999999999999998753
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=70.74 E-value=10 Score=25.86 Aligned_cols=58 Identities=9% Similarity=0.228 Sum_probs=39.2
Q ss_pred ccHHHHHHHHhccC-----ceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 019542 265 VDNARLEQVFSEHG-----KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 331 (339)
Q Consensus 265 ~tee~L~~~F~~~G-----~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l~g~~l~gr~l~V~~a~ 331 (339)
+..-+|..++..-+ .|-.++|. ..|.||+-.. ..|..++..|++..+.|+.++|+.++
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 45556666665443 56677774 3389999887 56888999999999999999998764
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=58.92 E-value=46 Score=23.69 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=44.9
Q ss_pred CceEEecCCCccccHHHHHHHHhccCceEEEEEeeeCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 019542 253 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 315 (339)
Q Consensus 253 ~~~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~e~A~~Al~~l 315 (339)
.+-|.|-|+|..+-..++--...-.|.--.|..+ .|.|+|+|.+.++..-|+..|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 3567888999998888887777777877677664 467999999999999999877
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=29.39 E-value=1.5e+02 Score=20.98 Aligned_cols=67 Identities=12% Similarity=0.227 Sum_probs=51.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEeccHHHHHHHHHHhCCcccCCceeeee
Q 019542 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 234 (339)
Q Consensus 158 ~~~~vfVgnLp~~~t~e~L~~~F~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e~a~~Al~~~~~~~l~gr~l~V~ 234 (339)
..+.|-|-|+|..+-..++--..+..|---.+..+ -|-|.+.|.+.+.-.-|+..+-++ ++..|.+.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnh--nnnklqie 77 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIE 77 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEE
Confidence 45788999999999999888888888876666554 456999999999999999876433 33444444
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=22.49 E-value=1.6e+02 Score=23.71 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=39.3
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hccCCeeEEEEEecCCCCCcccEEEEEeccHH-HHHHHHHH
Q 019542 161 KLFVGNLPY-D--------VDSEKLAMLF--EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVE-EAEKAVEM 220 (339)
Q Consensus 161 ~vfVgnLp~-~--------~t~e~L~~~F--~~~G~i~~v~~~~~~~~g~~kg~afV~f~~~e-~a~~Al~~ 220 (339)
++.|-|+|. . .....|++.| ..|.++. |+.+..+. ...|+|.|.|.+-- ....|+..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHHH
Confidence 677888887 2 2457899977 8998754 66666554 36889999998543 34445544
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=21.62 E-value=1.7e+02 Score=23.48 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=33.3
Q ss_pred eEEecCCCc-c--------ccHHHHHHHH--hccCceEEEEEeeeCCCCCcceEEEEEeCCH
Q 019542 255 RIYVGNLPW-E--------VDNARLEQVF--SEHGKVVNARVVYDRETGRSRGFGFVTMSSE 305 (339)
Q Consensus 255 ~l~V~nLp~-~--------~tee~L~~~F--~~~G~V~~v~i~~d~~~~~~kg~afV~F~~~ 305 (339)
.+.|-|+|. . .....|+..| ..|.++. ++.+.++ .-..|+|.|.|.+-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCC
Confidence 466778776 2 3347899977 8898866 4455553 34688999999763
No 408
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=20.61 E-value=68 Score=27.87 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=27.4
Q ss_pred eEEecCCCccccHHHHHHHHhccCceEEEEEeee
Q 019542 255 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYD 288 (339)
Q Consensus 255 ~l~V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d 288 (339)
...|+|||+.++..-|..++.....+..+.++..
T Consensus 116 ~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 116 LRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp EEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred eEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 5789999999999999999986666666655554
No 409
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.31 E-value=1.2e+02 Score=21.48 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=0.0
Q ss_pred CeeEEEEEecCCCCCcccEEEEEecc
Q 019542 185 TVEIAEVIYNRETDRSRGFGFVTMST 210 (339)
Q Consensus 185 ~i~~v~~~~~~~~g~~kg~afV~f~~ 210 (339)
.|..|++......|+-++||-|.|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Done!