BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019543
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 567 bits (1462), Expect = e-162, Method: Compositional matrix adjust.
Identities = 277/386 (71%), Positives = 308/386 (79%), Gaps = 47/386 (12%)
Query: 1 MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
M+++EE VSTLL+N N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79 MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138
Query: 61 ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS--------- 111
ES CFTSGMAAL+AVTHL+ GEEIVAGDD+YGG+DRLLS
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198
Query: 112 --------------------------------------RKIAEMAHAHGALLLVDNSIMS 133
RKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258
Query: 134 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 193
PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318
Query: 194 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 253
W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 378
Query: 254 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 313
V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct: 379 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 438
Query: 314 VRISVGIEDVNDLISDLDKALRTGPL 339
VRIS GIEDV+DLISDLD A +T PL
Sbjct: 439 VRISAGIEDVDDLISDLDIAFKTFPL 464
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 251 bits (641), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 148/378 (39%), Positives = 209/378 (55%), Gaps = 53/378 (14%)
Query: 9 VSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXX 67
++TL ++ DP GA+ P+Y T+T+ Q S E+ ++Y+R+ NPTR A E
Sbjct: 20 LATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVAAL 79
Query: 68 XXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSR--------------- 112
F SGMAA + V LL G +VA DDLYGGT RL R
Sbjct: 80 EGGTRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDL 139
Query: 113 ---------------------------------KIAEMAHAHGALLLVDNSIMSPVLSRP 139
IA +A HG L +VDN+ SP+L RP
Sbjct: 140 TDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRP 199
Query: 140 LELGADIVMHSATKFIAGHSDVMAGVLAVKGER--LAKELYFLQNAEGSGLAPFDCWICL 197
L LGAD+V+HSATK++ GHSD++ G+ AV G+ LA+++ FLQN+ G PFD ++ L
Sbjct: 200 LSLGADLVVHSATKYLNGHSDMVGGI-AVVGDNAELAEQMAFLQNSIGGVQGPFDSFLAL 258
Query: 198 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 257
RG+KT+ LR+ +NA +A++L +HP ++KV Y GL HP H L Q G G ++S
Sbjct: 259 RGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSI 318
Query: 258 -LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI 316
L G +K E T+ F++ S G V+SL++ P M+HASIPV R+ G+++ LVR+
Sbjct: 319 VLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRL 378
Query: 317 SVGIEDVNDLISDLDKAL 334
SVGIED+ DL DL++AL
Sbjct: 379 SVGIEDLGDLRGDLERAL 396
>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
Length = 393
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 206/389 (52%), Gaps = 55/389 (14%)
Query: 2 SVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDAL 60
+++E +T ++ D +G++ P+ + TFKQ S A G Y+Y+RS NP R+ L
Sbjct: 1 TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENL 60
Query: 61 ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSR-------- 112
E F+SG A A + L G V+ D+YGGT R ++
Sbjct: 61 ERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120
Query: 113 --------------------------------------KIAEMAHAHGA----LLLVDNS 130
K+A++ H A +L+VDN+
Sbjct: 121 TSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNT 180
Query: 131 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP 190
+SP +S PL GADIV+HSATK+I GHSDV+ GVLA + L + L FLQNA G+ +P
Sbjct: 181 FLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSP 240
Query: 191 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAK 249
FD W+ RG+KT+ LRV + +A KIAEFLA+ V VNY GL HP +++ Q +
Sbjct: 241 FDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHR 300
Query: 250 GA--GSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA 306
A G ++SF + G + +T+ F++ S G ++SL+ +P M+H IP E R+A
Sbjct: 301 DALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREA 360
Query: 307 RGLTEDLVRISVGIEDVNDLISDLDKALR 335
G+ +DLVRISVGIED +DL+ D+ +AL+
Sbjct: 361 SGVFDDLVRISVGIEDTDDLLEDIKQALK 389
>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|B Chain B, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|C Chain C, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|D Chain D, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|3COG|A Chain A, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|B Chain B, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|C Chain C, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|D Chain D, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
Length = 403
Score = 231 bits (589), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 189/344 (54%), Gaps = 49/344 (14%)
Query: 25 ALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA 84
A+ P+ + TFKQ + ++ ++Y+RSGNPTR+ LE F SG+AA
Sbjct: 37 AVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATV 96
Query: 85 AVTHLLGTGEEIVAGDDLYGGTDRLL---------------------------------- 110
+THLL G++I+ DD+YGGT+R
Sbjct: 97 TITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVW 156
Query: 111 -------SRKI------AEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSATKFIA 156
++K+ A + H HG ++LV DN+ MSP RPL LGADI M+SATK++
Sbjct: 157 IETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMN 216
Query: 157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 216
GHSDV+ G+++V E L L FLQN+ G+ +P DC++C RG+KT+ +R+EK N
Sbjct: 217 GHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMA 276
Query: 217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYF 275
+A+FL S+P V+KV Y GLP HP HEL Q G G V ++ G+L ++ ++ K F
Sbjct: 277 VAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLF 336
Query: 276 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 319
++ S G +SL +P M+HAS+ R G+++ L+R+SVG
Sbjct: 337 TLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG 380
>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase
pdb|3ELP|A Chain A, Structure Of Cystationine Gamma Lyase
pdb|3ELP|C Chain C, Structure Of Cystationine Gamma Lyase
pdb|3ELP|D Chain D, Structure Of Cystationine Gamma Lyase
Length = 410
Score = 230 bits (587), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 189/344 (54%), Gaps = 49/344 (14%)
Query: 25 ALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA 84
A+ P+ + TFKQ + ++ ++Y+RSGNPTR+ LE F SG+AA
Sbjct: 41 AVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATV 100
Query: 85 AVTHLLGTGEEIVAGDDLYGGTDRLL---------------------------------- 110
+THLL G++I+ DD+YGGT+R
Sbjct: 101 TITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVW 160
Query: 111 -------SRKI------AEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSATKFIA 156
++K+ A + H HG ++LV DN+ MSP RPL LGADI M+SATK++
Sbjct: 161 IETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMN 220
Query: 157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 216
GHSDV+ G+++V E L L FLQN+ G+ +P DC++C RG+KT+ +R+EK N
Sbjct: 221 GHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMA 280
Query: 217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYF 275
+A+FL S+P V+KV Y GLP HP HEL Q G G V ++ G+L ++ ++ K F
Sbjct: 281 VAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLF 340
Query: 276 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 319
++ S G +SL +P M+HAS+ R G+++ L+R+SVG
Sbjct: 341 TLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG 384
>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With
Pyridoximine-5'- Phosphate
Length = 398
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/394 (34%), Positives = 203/394 (51%), Gaps = 59/394 (14%)
Query: 1 MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
MS G +T +++ + DP GALSTP++QT+TF SA E Y YTR
Sbjct: 1 MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52 SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
GNPT DALE SG++A+ + L G+ IV+ +YG T L
Sbjct: 61 LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGXTHAFL 120
Query: 111 SRK-----------------------------------------------IAEMAHAHGA 123
S +A +AH GA
Sbjct: 121 SHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 124 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 182
LL+VDN+ MSP +PL+LGADIV+HS TK+I GH DV+ G++ K E + + + L++
Sbjct: 181 LLVVDNTFMSPYXQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 242
G ++PF+ W+ LRGVKT+ +R+E+ +NA KIA FL HP + +V Y GL HP +E
Sbjct: 241 ITGGXMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300
Query: 243 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 301
L Q G ++SF + G L + ++ + + + VS G ++LI P M+H+ +
Sbjct: 301 LGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAP 360
Query: 302 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 335
E R G+T+ L+R+SVG+ED D+I+DL+ A+R
Sbjct: 361 EERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/394 (34%), Positives = 202/394 (51%), Gaps = 59/394 (14%)
Query: 1 MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
MS G +T +++ + DP GALSTP++QT+TF SA E Y YTR
Sbjct: 1 MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52 SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
GNPT DALE SG++A+ + L G+ IV+ +YG T L
Sbjct: 61 LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120
Query: 111 SRK-----------------------------------------------IAEMAHAHGA 123
S +A +AH GA
Sbjct: 121 SHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 124 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 182
LL+VDN+ MSP +PL+LGADIV+HS T +I GH DV+ G++ K E + + + L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 242
G ++PF+ W+ LRGVKT+ +R+E+ +NA KIA FL HP + +V Y GL HP +E
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300
Query: 243 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 301
L Q G ++SF + G L + ++ + + + VS G ++LI P M+H+ +
Sbjct: 301 LGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAP 360
Query: 302 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 335
E R G+T+ L+R+SVG+ED D+I+DL+ A+R
Sbjct: 361 EERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/394 (34%), Positives = 202/394 (51%), Gaps = 59/394 (14%)
Query: 1 MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
MS G +T +++ + DP GALSTP++QT+TF SA E Y YTR
Sbjct: 1 MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52 SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
GNPT DALE SG++A+ + L G+ IV+ +YG T L
Sbjct: 61 LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120
Query: 111 SRK-----------------------------------------------IAEMAHAHGA 123
S +A +AH GA
Sbjct: 121 SHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 124 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 182
LL+VDN+ MSP +PL+LGADIV+HS T +I GH DV+ G++ K E + + + L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 242
G ++PF+ W+ LRGVKT+ +R+E+ +NA KIA FL HP + +V Y GL HP +E
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300
Query: 243 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 301
L Q G ++SF + G L + ++ + + + VS G ++LI P M+H+ +
Sbjct: 301 LGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAP 360
Query: 302 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 335
E R G+T+ L+R+SVG+ED D+I+DL+ A+R
Sbjct: 361 EERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/387 (34%), Positives = 200/387 (51%), Gaps = 59/387 (15%)
Query: 8 GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRD 58
G +T +++ + DP GALSTP++QT+TF SA E Y YTR GNPT D
Sbjct: 8 GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 67
Query: 59 ALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRK---- 113
ALE SG++A+ + L G+ IV+ +YG T LS
Sbjct: 68 ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 127
Query: 114 -------------------------------------------IAEMAHAHGALLLVDNS 130
+A +AH GALL+VDN+
Sbjct: 128 GINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 187
Query: 131 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLA 189
MSP +PL+LGADIV+HS T +I GH DV+ G++ K E + + + L++ G ++
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 247
Query: 190 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK 249
PF+ W+ LRGVKT+ +R+E+ +NA KIA FL HP + +V Y GL HP +EL Q
Sbjct: 248 PFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS 307
Query: 250 GAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG 308
G ++SF + G L + ++ + + + VS G ++LI P M+H+ + E R G
Sbjct: 308 LPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 309 LTEDLVRISVGIEDVNDLISDLDKALR 335
+T+ L+R+SVG+ED D+I+DL+ A+R
Sbjct: 368 ITDGLIRLSVGLEDPEDIINDLEHAIR 394
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/387 (34%), Positives = 200/387 (51%), Gaps = 59/387 (15%)
Query: 8 GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRD 58
G +T +++ + DP GALSTP++QT+TF SA E Y YTR GNPT D
Sbjct: 8 GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 67
Query: 59 ALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRK---- 113
ALE SG++A+ + L G+ IV+ +YG T LS
Sbjct: 68 ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 127
Query: 114 -------------------------------------------IAEMAHAHGALLLVDNS 130
+A +AH GALL+VDN+
Sbjct: 128 GINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 187
Query: 131 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLA 189
MSP +PL+LGADIV+HS T +I GH DV+ G++ K E + + + L++ G ++
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 247
Query: 190 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK 249
PF+ W+ LRGVKT+ +R+E+ +NA KIA FL HP + +V Y GL HP +EL Q
Sbjct: 248 PFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS 307
Query: 250 GAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG 308
G ++SF + G L + ++ + + + VS G ++LI P M+H+ + E R G
Sbjct: 308 LPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 309 LTEDLVRISVGIEDVNDLISDLDKALR 335
+T+ L+R+SVG+ED D+I+DL+ A+R
Sbjct: 368 ITDGLIRLSVGLEDPEDIINDLEHAIR 394
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/378 (36%), Positives = 196/378 (51%), Gaps = 54/378 (14%)
Query: 8 GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESXXX 65
G++T ++ DP GA++ P+Y ++TF Q G Y+Y R+GNPTR ALE+
Sbjct: 17 GLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEAALA 76
Query: 66 XXXXXXXXXCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSR------------ 112
F+SGMAA A+ +L G+ +V DD YGGT RL+ +
Sbjct: 77 AVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPV 136
Query: 113 -----------------------------------KIAEMAHAHGALLLVDNSIMSPVLS 137
IA++ A +LVDN+ SP L
Sbjct: 137 ALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQ 196
Query: 138 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 197
+PL LGAD+V+HS T +I GHSDV+ G L E L + FLQN G+ PFD ++ +
Sbjct: 197 QPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTM 256
Query: 198 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 257
RG+KT+ LR+++ +NA +AEFLA HP + V Y GLP HPGH + Q +G G ++S
Sbjct: 257 RGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSV 316
Query: 258 -LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI 316
+ ++ + T F + S GSV+SLI P M+HAS + + +DLVR+
Sbjct: 317 RMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLE---VPDDLVRL 373
Query: 317 SVGIEDVNDLISDLDKAL 334
SVGIEDV DL+ DL +AL
Sbjct: 374 SVGIEDVADLLDDLKQAL 391
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
pdb|1E5F|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
Length = 404
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/384 (32%), Positives = 205/384 (53%), Gaps = 59/384 (15%)
Query: 10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALE 61
+T ++ + + D +GA P+YQT+TF + + G Y YTR GNPT LE
Sbjct: 9 ATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLE 68
Query: 62 SXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSR-------- 112
+SGM A+AA V +L G+ +++ + LYG T L
Sbjct: 69 GKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQ 128
Query: 113 ---------------------------------KIAEM------AHAH-GALLLVDNSIM 132
KI +M AH+ G L++ DN+
Sbjct: 129 VDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFC 188
Query: 133 SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPF 191
SP+++ P++ G D+V+HSATK+I GH+DV+AG++ K + L + + +++ GS ++P
Sbjct: 189 SPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPH 248
Query: 192 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA 251
D W+ RG+ T+ +R++ + +NA K+AE+L SHP V+KV Y G +H GH++ Q +
Sbjct: 249 DAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMY 308
Query: 252 GSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT 310
GS+++F+ S +K +++ K ++ VS G +SLI P M+HA +P E R+A G+T
Sbjct: 309 GSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGIT 368
Query: 311 EDLVRISVGIEDVNDLISDLDKAL 334
+ ++R+SVGIED ++LI+D + L
Sbjct: 369 DGMIRLSVGIEDADELIADFKQGL 392
>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEL|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEM|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEO|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEP|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
Length = 389
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/363 (33%), Positives = 183/363 (50%), Gaps = 56/363 (15%)
Query: 29 PLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
P++QT+TF S + + Y+R GNPT + E F SGM
Sbjct: 25 PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 81 AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------------------- 111
A+++ T L G+ ++AGD LYG T L +
Sbjct: 85 GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 112 -------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 152
+ IA + H GA L+VD + SP +PLELGADI +HS +
Sbjct: 145 TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVS 204
Query: 153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 212
K+I GH DV+ GV + K + F + GS +AP D ++C RG+KT+ +R++ +
Sbjct: 205 KYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHME 264
Query: 213 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 272
N K+A+FL H ++ KVN+ GL PGH++ Q G GS F S +K ++E
Sbjct: 265 NGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHL 324
Query: 273 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 332
K ++ VS G V +LI P M+HA++P + + +G+T +LVRISVGIE+V+D+I+DL +
Sbjct: 325 KVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQ 384
Query: 333 ALR 335
AL
Sbjct: 385 ALE 387
>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|B Chain B, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|C Chain C, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|D Chain D, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3AEJ|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEM|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
Length = 389
Score = 207 bits (526), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 121/363 (33%), Positives = 182/363 (50%), Gaps = 56/363 (15%)
Query: 29 PLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
P++QT+TF S + + Y+R GNPT + E F SGM
Sbjct: 25 PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 81 AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------------------- 111
A+++ T L G+ ++AGD LYG T L +
Sbjct: 85 GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 112 -------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 152
+ IA + H GA L+VD + SP +PLELGADI +HS +
Sbjct: 145 TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVS 204
Query: 153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 212
+I GH DV+ GV + K + F + GS +AP D ++C RG+KT+ +R++ +
Sbjct: 205 XYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHME 264
Query: 213 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 272
N K+A+FL H ++ KVN+ GL PGH++ Q G GS F S +K ++E
Sbjct: 265 NGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHL 324
Query: 273 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 332
K ++ VS G V +LI P M+HA++P + + +G+T +LVRISVGIE+V+D+I+DL +
Sbjct: 325 KVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQ 384
Query: 333 ALR 335
AL
Sbjct: 385 ALE 387
>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
Length = 386
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 127/367 (34%), Positives = 186/367 (50%), Gaps = 49/367 (13%)
Query: 18 NEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFT 77
N+ + YG + P++ ++T+ E +DY+R GNPTRD ++
Sbjct: 15 NDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTN 74
Query: 78 SGMAALAAVTHL-LGTGEEIVAGDDLYGGTDRLLSR------------------------ 112
+GM+A+ VT + L G+ +VA D YGG+ RL
Sbjct: 75 TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL 134
Query: 113 -----------------------KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 149
KI +A GA+ +VDN+ +SP L PL LGAD+V+H
Sbjct: 135 AEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLH 194
Query: 150 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 209
S T ++ GHSDV+AGV+ K + EL + N G FD ++ LRG++T+ R+E
Sbjct: 195 SCTXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMEL 254
Query: 210 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHV 268
Q NAQ I ++L + P VKK+ + LPE+ GHE+ Q KG G++LSF L G +
Sbjct: 255 AQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRF 314
Query: 269 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 328
+ F++ S G V+SLIS M+HA + E R A G++E L+RIS GIED DLI+
Sbjct: 315 LGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIA 374
Query: 329 DLDKALR 335
DL+ R
Sbjct: 375 DLENGFR 381
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/212 (46%), Positives = 147/212 (69%), Gaps = 1/212 (0%)
Query: 124 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQN 182
L++VDN+ SP+L+ PL+LG DIV+HSATK+I GH+DV+AG++ + + +AK + +++
Sbjct: 116 LVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKD 175
Query: 183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 242
G+ ++P D W+ RG T+ +RV++ +NAQK+AEFL H VKKV Y GLP+HPGHE
Sbjct: 176 ITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHE 235
Query: 243 LHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE 302
+ Q K GS+++F L +K V++ S+ VS G +SLI P M+HA +P E
Sbjct: 236 IAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKE 295
Query: 303 VRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
R+A GLT++L+R+SVG E+V D+I DL +AL
Sbjct: 296 EREAAGLTDNLIRLSVGCENVQDIIDDLKQAL 327
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 201 bits (511), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 130/391 (33%), Positives = 201/391 (51%), Gaps = 65/391 (16%)
Query: 7 PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
PG +T ++ + +DP GAL P+YQTATF P+ A E + Y+R NP
Sbjct: 8 PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56 TRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRKI 114
T + LE+ SGM A+ + + LL G+E++ G+ LYG T L I
Sbjct: 66 TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGI 125
Query: 115 AE-----------------------------------------------MAHAHGALLLV 127
E +A HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 128 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 185
DN+ +P L RPLELGAD+V+HSATK+++GH D+ AG++ V + L + L++ G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 186 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 245
+ L+P D + +RG+KT+ LR+++ NAQ +AEFLA P+V+ ++Y GL P + L
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304
Query: 246 SQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 304
Q G +++F L G + + + + FS VS G +SL P M+H+S E R
Sbjct: 305 QQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEER 364
Query: 305 QARGLTEDLVRISVGIEDVNDLISDLDKALR 335
G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 365 AHYGISEGLVRLSVGLEDIDDLLADVQQALK 395
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/391 (32%), Positives = 200/391 (51%), Gaps = 65/391 (16%)
Query: 7 PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
PG +T ++ + +DP GAL P+YQTATF P+ A E + Y+R NP
Sbjct: 8 PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56 TRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRKI 114
T + LE+ SGM A+ + + LL G+E++ G+ LYG T L I
Sbjct: 66 TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGI 125
Query: 115 AE-----------------------------------------------MAHAHGALLLV 127
E +A HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 128 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 185
DN+ +P L RPLELGAD+V+HSAT +++GH D+ AG++ V + L + L++ G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 186 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 245
+ L+P D + +RG+KT+ LR+++ NAQ +AEFLA P+V+ ++Y GL P + L
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304
Query: 246 SQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 304
Q G +++F L G + + + + FS VS G +SL P M+H+S E R
Sbjct: 305 QQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEER 364
Query: 305 QARGLTEDLVRISVGIEDVNDLISDLDKALR 335
G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 365 AHYGISEGLVRLSVGLEDIDDLLADVQQALK 395
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/391 (32%), Positives = 200/391 (51%), Gaps = 65/391 (16%)
Query: 7 PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
PG +T ++ + +DP GAL P+YQTATF P+ A E + Y+R NP
Sbjct: 8 PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56 TRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRKI 114
T + LE+ SGM A+ + + LL G+E++ G+ LYG T L I
Sbjct: 66 TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGI 125
Query: 115 AE-----------------------------------------------MAHAHGALLLV 127
E +A HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 128 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 185
DN+ +P L RPLELGAD+V+HSAT +++GH D+ AG++ V + L + L++ G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 186 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 245
+ L+P D + +RG+KT+ LR+++ NAQ +AEFLA P+V+ ++Y GL P + L
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304
Query: 246 SQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 304
Q G +++F L G + + + + FS VS G +SL P M+H+S E R
Sbjct: 305 QQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEER 364
Query: 305 QARGLTEDLVRISVGIEDVNDLISDLDKALR 335
G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 365 AHYGISEGLVRLSVGLEDIDDLLADVQQALK 395
>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|B Chain B, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|C Chain C, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|D Chain D, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
Length = 414
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/359 (31%), Positives = 176/359 (49%), Gaps = 54/359 (15%)
Query: 30 LYQTATFKQPS-ATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAAL-AAVT 87
+Y +A + S A E Y Y+R GNPT E SGMAA+ ++
Sbjct: 55 VYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLG 114
Query: 88 HLLGTGEEIVAGDDLYG---------------------GTD-----RLLS---------- 111
LLG G+ +VA L+G G D R LS
Sbjct: 115 ALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFET 174
Query: 112 -----------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD 160
+ E+AHA GA +++DN +P+L + LG D+V++S T I G
Sbjct: 175 PSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTXHIDGQGR 234
Query: 161 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF 220
V+ G + E + + L G ++ F+ W+ L+G++T+A+RV+ +AQ+IAEF
Sbjct: 235 VLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEF 294
Query: 221 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH----VVETTKYF 275
L HP V+ V Y LP HP ++L Q G G+V++F L ++K V++ +
Sbjct: 295 LNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLI 354
Query: 276 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
I+ + G KSL++ P +H ++ E R A GL + +VRISVG+ED +DLI+D+D+AL
Sbjct: 355 DISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRAL 413
>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|G Chain G, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|H Chain H, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1I41|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I43|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I48|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
Length = 445
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 173/368 (47%), Gaps = 59/368 (16%)
Query: 25 ALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCF 76
A++TP+ T+ + +E ++Y R GNPT LE
Sbjct: 76 AITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLM 135
Query: 77 TSGM-AALAAVTHLLGTGEEIVAGDDLY--------------------------GGTDRL 109
SGM A+ + L+ G IV D Y G +
Sbjct: 136 ASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELA 195
Query: 110 LSRK----------------------IAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 147
L++K ++++ H GAL+ +D + +P+ + L LGAD+V
Sbjct: 196 LNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLV 255
Query: 148 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 207
+HSATKF+ GH+DV+AG ++ +L E+ L + G L P ++ +RG+KT+ LRV
Sbjct: 256 LHSATKFLGGHNDVLAGCIS-GPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRV 314
Query: 208 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSK 266
++Q A ++AE L +HP+V+ V Y GL HP H + Q G G +SF + G L +
Sbjct: 315 QQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTA 374
Query: 267 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL 326
V+ K I SFG +S++ P MS+ + R G+ ++LVR S G+ED +DL
Sbjct: 375 KFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDL 434
Query: 327 ISDLDKAL 334
+D+ +AL
Sbjct: 435 KADILQAL 442
>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
pdb|2CTZ|B Chain B, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
Length = 421
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 118/399 (29%), Positives = 171/399 (42%), Gaps = 91/399 (22%)
Query: 27 STPLYQTAT--FKQPS------ATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTS 78
P+Y T + FK P A + Y+R NPT D LE S
Sbjct: 22 QVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATAS 81
Query: 79 GMAA-LAAVTHLLGTGEEIVAGDDLYGGT--------------DRLLSRK---------- 113
G AA A+T L G+ IV+ +LYGGT R SR+
Sbjct: 82 GHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALT 141
Query: 114 ------------------------IAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVM 148
+A+ A G L+VDN+ M L RPL GA +V
Sbjct: 142 DEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVT 201
Query: 149 HSATKFIAGHSDVMAGVL---------------------AVKGERLAK---ELYFLQNA- 183
HS TK++ GH V+AG + G RL + EL F+ A
Sbjct: 202 HSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKAR 261
Query: 184 ------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 237
+G L PF+ W+ L G++T++LR E+ +N +A +L P+V VNY GLP
Sbjct: 262 VDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPH 321
Query: 238 HPGHELHYSQAKGA-GSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 295
HP H+ KG G+VL+F L G +K + K S + G ++L P +
Sbjct: 322 HPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTT 381
Query: 296 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
H+ + E + G++ ++VR+SVG+E V DL ++L +AL
Sbjct: 382 HSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420
>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8,Oah2
Length = 412
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 164/397 (41%), Gaps = 85/397 (21%)
Query: 21 DPYGALSTPLYQTATF--------KQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXX 72
DP+GA+ P+Y A + ++ AT G Y Y R +PT ALE
Sbjct: 15 DPHGAVGLPIYAVAAYGFKTLEEGQERFATGEG-YVYARQKDPTAKALEERLKALEGALE 73
Query: 73 XXCFTSGMAALAAVTHLLGT-GEEIVAGDDLYGGTDRLLSR------------------- 112
SG AA A L G+E+VA L+G T L +
Sbjct: 74 AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPEPEAV 133
Query: 113 ---------------------------KIAEMAHAHGALLLVDNSI-MSPVLSRPLELGA 144
+A +A G L+VDN+ + L RPL GA
Sbjct: 134 REALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGA 193
Query: 145 DIVMHSATKFIAGHSDVMAG-VLAVKGERLAKELYFLQ---------------------- 181
+V+ S T + +GH V+ G VL+ + E FLQ
Sbjct: 194 HVVVESLTXWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVR 253
Query: 182 ----NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 237
+ G L+PF+ ++ +G++T+ALRV + + A+ +AE L HP+VK + Y GLPE
Sbjct: 254 TLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPE 313
Query: 238 HPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA 297
P H G +L+ G L + + + + G ++L+ P +H+
Sbjct: 314 DPAHRNARKYLASGGPILTLDLGDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHS 372
Query: 298 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
+ E R G+T LVR+SVG+ED DL++ ++AL
Sbjct: 373 RLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEAL 409
>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
pdb|3RI6|B Chain B, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
Length = 430
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 111/390 (28%), Positives = 170/390 (43%), Gaps = 76/390 (19%)
Query: 21 DPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXX 72
D +GAL TP+Y A F+ ++ E + Y+RS NPT + LE
Sbjct: 40 DVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALG 99
Query: 73 XXCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRKI----------------- 114
SGMAA++ A+ L G+ +V D L+G T L + +
Sbjct: 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLA 159
Query: 115 ------------------------------AEMAHAHGALLLVDNSIMSPVLSRPLELGA 144
+++ HA G L+VD ++ P L LG
Sbjct: 160 VEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGV 219
Query: 145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL-------------YFLQNAE------- 184
DI + S+TKFI+G + GVL G K L FL A
Sbjct: 220 DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNL 279
Query: 185 GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH 244
G L+P + ++ G++TMALR+E+ NAQ++A +L S P+VK VN+ LP+ P + +
Sbjct: 280 GPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIA 339
Query: 245 YSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 304
Q + AGS+L+F S S ++ K + KSLI P + +A E R
Sbjct: 340 KRQFRYAGSILTFELESKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEER 399
Query: 305 QARGLTEDLVRISVGIEDVNDLISDLDKAL 334
++ ++R+SVGIE++ DL D+ +AL
Sbjct: 400 LKLEISPAMMRLSVGIEEIEDLKEDILQAL 429
>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2FQ6|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2GQN|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
pdb|2GQN|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
Length = 415
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 118/217 (54%), Gaps = 16/217 (7%)
Query: 123 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 182
A++++DN+ + VL + L+ G D+ + +ATK++ GHSD M G AV R ++L
Sbjct: 200 AIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARCWEQLRENAY 258
Query: 183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 242
G + +I RG++T+ +R+ + +++ K+AE+LA HP+V +VN+ LP GHE
Sbjct: 259 LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHE 318
Query: 243 LHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISMPCFMSHASI 299
G+ + SF+ ++ + ++ FS+ S+G +SLI A+
Sbjct: 319 FWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL-------ANQ 371
Query: 300 PVEVRQARGLTE-----DLVRISVGIEDVNDLISDLD 331
P + R E L+R+ +G+EDV+DLI+DLD
Sbjct: 372 PEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLD 408
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 118/217 (54%), Gaps = 16/217 (7%)
Query: 123 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 182
A++++DN+ + VL + L+ G D+ + +ATK++ GHSD M G AV R ++L
Sbjct: 180 AIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARCWEQLRENAY 238
Query: 183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 242
G + +I RG++T+ +R+ + +++ K+AE+LA HP+V +VN+ LP GHE
Sbjct: 239 LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHE 298
Query: 243 LHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISMPCFMSHASI 299
G+ + SF+ ++ + ++ FS+ S+G +SLI A+
Sbjct: 299 FWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL-------ANQ 351
Query: 300 PVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLD 331
P + R + L+R+ +G+EDV+DLI+DLD
Sbjct: 352 PEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLD 388
>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
pdb|1CL1|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
Length = 395
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 117/217 (53%), Gaps = 16/217 (7%)
Query: 123 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 182
A++++DN+ + VL + L+ G D+ + +AT ++ GHSD M G AV R ++L
Sbjct: 180 AIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGT-AVCNARCWEQLRENAY 238
Query: 183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 242
G + +I RG++T+ +R+ + +++ K+AE+LA HP+V +VN+ LP GHE
Sbjct: 239 LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHE 298
Query: 243 LHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISMPCFMSHASI 299
G+ + SF+ ++ + ++ FS+ S+G +SLI A+
Sbjct: 299 FWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL-------ANQ 351
Query: 300 PVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLD 331
P + R + L+R+ +G+EDV+DLI+DLD
Sbjct: 352 PEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLD 388
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,523,829
Number of Sequences: 62578
Number of extensions: 364625
Number of successful extensions: 988
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 51
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)