Query 019544
Match_columns 339
No_of_seqs 192 out of 1524
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:36:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02782 Branched-chain amino 100.0 2.6E-71 5.6E-76 537.4 37.1 326 14-339 66-403 (403)
2 PLN02259 branched-chain-amino- 100.0 3.8E-71 8.3E-76 533.8 36.2 330 10-339 48-388 (388)
3 PLN02883 Branched-chain amino 100.0 7.1E-71 1.5E-75 530.7 36.2 330 10-339 44-384 (384)
4 PLN03117 Branched-chain-amino- 100.0 5.9E-66 1.3E-70 495.0 36.8 309 22-339 43-351 (355)
5 KOG0975 Branched chain aminotr 100.0 1.8E-64 3.9E-69 468.2 26.1 325 11-337 38-379 (379)
6 PRK13357 branched-chain amino 100.0 9.9E-63 2.1E-67 473.4 35.4 307 24-339 41-356 (356)
7 TIGR01123 ilvE_II branched-cha 100.0 1.7E-62 3.7E-67 465.2 34.7 304 25-338 1-313 (313)
8 PRK06606 branched-chain amino 100.0 6.2E-61 1.3E-65 453.2 34.4 296 21-338 6-306 (306)
9 TIGR01122 ilvE_I branched-chai 100.0 6.2E-61 1.3E-65 451.7 33.8 292 25-338 1-298 (298)
10 cd01557 BCAT_beta_family BCAT_ 100.0 2.2E-57 4.8E-62 423.6 33.4 275 46-326 2-279 (279)
11 PRK12479 branched-chain amino 100.0 2.1E-57 4.6E-62 427.7 32.5 277 21-327 3-287 (299)
12 PRK08320 branched-chain amino 100.0 2.5E-56 5.5E-61 418.5 32.7 275 22-326 3-285 (288)
13 PRK07650 4-amino-4-deoxychoris 100.0 2.6E-56 5.6E-61 417.4 32.1 273 23-326 1-277 (283)
14 PRK07544 branched-chain amino 100.0 2.2E-56 4.8E-61 419.6 31.6 277 22-328 9-290 (292)
15 PRK13356 aminotransferase; Pro 100.0 3.5E-56 7.6E-61 417.0 31.9 273 23-326 8-284 (286)
16 PRK12400 D-amino acid aminotra 100.0 3.3E-55 7.3E-60 411.1 32.3 276 20-326 3-284 (290)
17 PRK06680 D-amino acid aminotra 100.0 1E-54 2.3E-59 407.0 33.1 271 22-327 3-284 (286)
18 PLN02845 Branched-chain-amino- 100.0 7.9E-55 1.7E-59 415.4 32.6 276 22-327 41-325 (336)
19 COG0115 IlvE Branched-chain am 100.0 1.5E-54 3.3E-59 405.4 31.5 278 22-327 2-283 (284)
20 cd01558 D-AAT_like D-Alanine a 100.0 2.4E-54 5.3E-59 401.4 31.2 263 25-320 1-270 (270)
21 TIGR01121 D_amino_aminoT D-ami 100.0 1.3E-53 2.7E-58 397.8 32.4 264 24-322 2-273 (276)
22 PRK07849 4-amino-4-deoxychoris 100.0 1.2E-53 2.6E-58 400.7 31.4 270 21-322 6-286 (292)
23 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 5.5E-53 1.2E-57 389.1 30.5 252 50-320 1-256 (256)
24 PRK06092 4-amino-4-deoxychoris 100.0 6.4E-53 1.4E-57 391.6 30.5 263 24-322 2-267 (268)
25 cd01559 ADCL_like ADCL_like: 4 100.0 7.9E-53 1.7E-57 386.9 29.1 246 50-320 1-249 (249)
26 TIGR03461 pabC_Proteo aminodeo 100.0 1.1E-52 2.5E-57 388.4 30.1 257 25-317 1-260 (261)
27 PRK09266 hypothetical protein; 100.0 3.3E-51 7.2E-56 379.6 28.1 257 22-322 3-260 (266)
28 PF01063 Aminotran_4: Aminotra 100.0 1.6E-42 3.6E-47 314.3 23.8 224 76-320 1-231 (231)
29 PRK07546 hypothetical protein; 100.0 9.5E-41 2.1E-45 299.0 24.6 205 57-296 4-209 (209)
30 PRK07101 hypothetical protein; 100.0 7.3E-32 1.6E-36 237.2 20.9 183 57-290 3-187 (187)
31 PF15507 DUF4649: Domain of un 71.1 5.4 0.00012 29.3 3.1 54 266-319 11-66 (72)
32 cd05569 PTS_IIB_fructose PTS_I 55.1 58 0.0012 25.1 6.6 36 253-288 20-64 (96)
33 TIGR00829 FRU PTS system, fruc 47.8 38 0.00082 25.6 4.4 32 256-287 22-62 (85)
34 PF03698 UPF0180: Uncharacteri 46.8 67 0.0015 24.1 5.5 67 253-320 12-79 (80)
35 PRK10474 putative PTS system f 44.8 38 0.00082 25.7 4.0 36 252-287 4-48 (88)
36 COG1935 Uncharacterized conser 39.0 35 0.00075 27.4 3.0 44 245-289 5-53 (122)
37 PRK03094 hypothetical protein; 35.1 1.5E+02 0.0033 22.3 5.7 66 254-320 13-79 (80)
38 PF13051 DUF3912: Protein of u 35.0 42 0.0009 23.4 2.5 38 225-262 31-68 (68)
39 PF04322 DUF473: Protein of un 34.3 43 0.00093 27.2 2.9 45 245-289 5-53 (119)
40 COG2257 Uncharacterized homolo 32.4 31 0.00067 26.5 1.7 32 247-278 30-61 (92)
41 PRK10427 putative PTS system f 31.7 86 0.0019 25.1 4.3 32 256-287 27-67 (114)
42 COG1445 FrwB Phosphotransferas 30.9 1.1E+02 0.0023 25.0 4.7 35 252-286 22-65 (122)
43 cd03079 GST_N_Metaxin2 GST_N f 22.8 2.9E+02 0.0062 20.2 5.4 59 235-304 2-62 (74)
44 PRK11404 putative PTS system 21.8 1.9E+02 0.0041 29.3 5.7 31 256-286 28-67 (482)
45 PHA01082 putative transcriptio 21.6 22 0.00048 28.8 -0.8 40 290-336 44-83 (133)
46 PF00218 IGPS: Indole-3-glycer 21.4 2.2E+02 0.0048 26.2 5.6 53 197-279 123-175 (254)
47 PRK06683 hypothetical protein; 21.1 1.3E+02 0.0029 22.5 3.4 29 249-278 40-68 (82)
48 cd03057 GST_N_Beta GST_N famil 21.1 1.2E+02 0.0025 21.5 3.1 63 253-319 13-75 (77)
49 cd01712 ThiI ThiI is required 20.6 1.3E+02 0.0027 25.6 3.7 64 196-267 94-160 (177)
50 PF09778 Guanylate_cyc_2: Guan 20.6 1.1E+02 0.0024 27.5 3.3 27 251-277 92-118 (212)
51 PF08222 HTH_CodY: CodY helix- 20.2 1.6E+02 0.0036 20.7 3.3 23 247-270 14-39 (61)
No 1
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=2.6e-71 Score=537.36 Aligned_cols=326 Identities=66% Similarity=1.077 Sum_probs=293.5
Q ss_pred ccccccccCcccceeeeee--hhcccc------c-ccc--ccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHH
Q 019544 14 KLYMISFSQIGFWQIRFTT--SAKFKL------E-LVI--FFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNA 82 (339)
Q Consensus 14 ~~~~~~~~~~~~~~g~~~~--~~~~~~------~-i~p--~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl 82 (339)
+...+++++++|+.-+++| ..++.. + ++| .+.++|.|++|+||||||||||+|++.||++++|++++|+
T Consensus 66 ~~~~~~~~~l~fg~~~td~m~~~~~~~~~~w~ng~ivp~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~d~H~ 145 (403)
T PLN02782 66 ELADIDWDNLGFGLVPTDYMYIMKCNRDGEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENA 145 (403)
T ss_pred ccccCCccccCCCccccCceEEEEECCCCcEeCCEEEECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeChHHHH
Confidence 3345566777777777666 333321 1 566 7778899999999999999999999999999899999999
Q ss_pred HHHHHhHhcCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCccccCC
Q 019544 83 IRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG 162 (339)
Q Consensus 83 ~RL~~Sa~~l~~~~~~~~~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~g 162 (339)
+||.+||++|+|+.|+.++|.+++.++++.|+.|+|+...+.+|||++++|+++.+|+.++.+++++|++.|.++|+..|
T Consensus 146 ~RL~~SA~rL~lp~~~~e~l~~~i~~lv~~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~~~~~~~i~~~p~~~~~~~g 225 (403)
T PLN02782 146 IRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 225 (403)
T ss_pred HHHHHHHHHhCcCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCCcCcCCCCCcEEEEEEEECccccccC
Confidence 99999999999998889999999999999999999987667999999999877778887777788999999998888788
Q ss_pred CcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCC
Q 019544 163 LAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATS 242 (339)
Q Consensus 163 ~~~~~l~~~~~~~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~ 242 (339)
++++++.+++++.|..|+.++++|+++||+.+++++++|+++|+||+||+|..++|+|+|++++|||++++++|+||+++
T Consensus 226 ~~~v~l~v~~~~~Ra~p~g~g~~Kt~~nY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l~ 305 (403)
T PLN02782 226 VAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAIK 305 (403)
T ss_pred CccEEEEEeCceeecCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEcCCCc
Confidence 88888877767889999999999998899999999999999999999999953379999999999999999999999999
Q ss_pred CCcccChHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEee-CCCchHHHHHHHHHHH
Q 019544 243 GTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEF-KTGAQSVSRELYSTLV 321 (339)
Q Consensus 243 ~~iL~GItR~~vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~-~~~~gp~t~~L~~~~~ 321 (339)
.+||+||||+.||++|+++|++|+|+.|+++||.+|||+|+|||+.+|+||.+|+++|+.+.+ +|++||+|++|++.|.
T Consensus 306 ~~iLpGITR~svlela~~~Gi~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~g~~~~~~~g~~Gpvt~~L~~~l~ 385 (403)
T PLN02782 306 GTILPGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKRVSYGEGGFGTVSQQLYTVLT 385 (403)
T ss_pred CCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEccCcceEEEEEEEEECCEEEeCCCCCcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888988743 4678999999999999
Q ss_pred HhHcCCCCCCCCCeeeCC
Q 019544 322 GIQTGLIKDNKGWTVEIN 339 (339)
Q Consensus 322 ~~~~~~~~d~~~w~~~~~ 339 (339)
++|+|+.+|++||+.+|+
T Consensus 386 ~iq~G~~~~~~~W~~~v~ 403 (403)
T PLN02782 386 SLQMGLIEDNMNWTVELS 403 (403)
T ss_pred HHhcCCCCCCCCCeEECC
Confidence 999999999999999986
No 2
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=3.8e-71 Score=533.78 Aligned_cols=330 Identities=67% Similarity=1.055 Sum_probs=295.0
Q ss_pred CCccccccccccCcccceeeeee--hhcccc------c-ccc--ccccCCcccchhcccceeeeeEEEeccCCeeeecCh
Q 019544 10 FSNWKLYMISFSQIGFWQIRFTT--SAKFKL------E-LVI--FFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRP 78 (339)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~------~-i~p--~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l 78 (339)
...++...+++++++|+..++++ ..+++. + ++| .+.++|.|++|+||||||||||+|+..||++++||+
T Consensus 48 ~~~~~~~~~~~~~l~f~~~~td~m~~~~~~~~~~w~~g~ivp~~~~~i~~~drgl~YGdgvFEglkayr~~~G~i~lfr~ 127 (388)
T PLN02259 48 NGDDVYADLDWDNLGFGLNPADYMYVMKCSKDGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRP 127 (388)
T ss_pred ccccccccCCccccCCCCcccCceEEEEECCCCeEECCEEeEchhCeeCchhhHHHhhhhhhhcEEEEECCCCeEeecCc
Confidence 44555566677777777777766 333322 1 566 777899999999999999999999988999989999
Q ss_pred hhHHHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCcc
Q 019544 79 DQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNY 158 (339)
Q Consensus 79 ~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~ 158 (339)
++|++||.+||++|+||.|+.++|.+++.++++.|+.|+|+...+.+||||+++|.++.+|+.++.++++++++.|.++|
T Consensus 128 ~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p~~~~~~~i~~~p~~~~ 207 (388)
T PLN02259 128 DHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNY 207 (388)
T ss_pred HHHHHHHHHhHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCcCCCCCcEEEEEEEechhh
Confidence 99999999999999999889999999999999999999998766799999999988766888777778999999999888
Q ss_pred ccCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEc
Q 019544 159 FKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIIST 238 (339)
Q Consensus 159 ~~~g~~~~~l~~~~~~~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~T 238 (339)
+.+|++++++.+.+++.|..|+.++++|+.+||+.+++++++|+++||||+||+|..++|+|+|++++|||++++++|+|
T Consensus 208 ~~~g~~~i~l~v~~~~~Ra~p~~~g~~K~~~NY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~T 287 (388)
T PLN02259 208 FKEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTIST 287 (388)
T ss_pred hhcCcceEEEEeecceeccCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEEcCcEEEEEEECCEEEc
Confidence 87888888887666789999988999999779999999999999999999999996447999999999999999999999
Q ss_pred cCCCCCcccChHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHH
Q 019544 239 PATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYS 318 (339)
Q Consensus 239 P~l~~~iL~GItR~~vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~ 318 (339)
|+++.+||+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||+.+|+||++|++.++.+.+.+..||+|++|++
T Consensus 288 P~l~~~iL~GITR~sIl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~~~~~~~~~~~g~~t~~L~~ 367 (388)
T PLN02259 288 PATNGTILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKRVEYKTGDESVCQKLRS 367 (388)
T ss_pred CCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEEEEcCCcceEEEEEEEecCCceEEeCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998766665444446899999999
Q ss_pred HHHHhHcCCCCCCCCCeeeCC
Q 019544 319 TLVGIQTGLIKDNKGWTVEIN 339 (339)
Q Consensus 319 ~~~~~~~~~~~d~~~w~~~~~ 339 (339)
.|.++|+|+++|++||+++||
T Consensus 368 ~l~~iq~G~~~~~~~W~~~~~ 388 (388)
T PLN02259 368 VLVGIQTGLIEDNKGWVTDIN 388 (388)
T ss_pred HHHHHHcCCCCCCCCCeEECC
Confidence 999999999999999999997
No 3
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=7.1e-71 Score=530.75 Aligned_cols=330 Identities=61% Similarity=0.958 Sum_probs=298.8
Q ss_pred CCccccccccccCcccceeeeee--hhccccc-------ccc--ccccCCcccchhcccceeeeeEEEeccCCeeeecCh
Q 019544 10 FSNWKLYMISFSQIGFWQIRFTT--SAKFKLE-------LVI--FFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRP 78 (339)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~-------i~p--~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l 78 (339)
..+++...+++++++|+..+++| ..++..+ |+| ++.++|.+++|+||||||||||+|++.||++.+|++
T Consensus 44 ~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~w~~~~i~p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~ 123 (384)
T PLN02883 44 REDEEYADVDWDKLGFSLVRTDFMFATKSCRDGNFEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRP 123 (384)
T ss_pred ccccccccCCchhcCcCCeecCceEEEEEcCCCcccCCeEeeCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeCh
Confidence 55667677889999999999888 4443332 778 999999999999999999999999998999989999
Q ss_pred hhHHHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCcc
Q 019544 79 DQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNY 158 (339)
Q Consensus 79 ~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~ 158 (339)
++|++||.+||++|+||.|+.++|.+++.++++.|..|+|+...+.+||||+++|+++.+|+.++.+++++|++.|.++|
T Consensus 124 ~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~wvp~~~~~~lYIRp~v~~~~~~lG~~~~~~~~~~i~~~p~~~y 203 (384)
T PLN02883 124 ELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNY 203 (384)
T ss_pred hHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCCCCeEEEEEEEecccc
Confidence 99999999999999999889999999999999999999998766789999999988777888877788999999999988
Q ss_pred ccCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEc
Q 019544 159 FKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIIST 238 (339)
Q Consensus 159 ~~~g~~~~~l~~~~~~~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~T 238 (339)
+..|++++++.++..++|+.|++++++|+.+||+.+++++++|+++||||+||+|.+++|+|+|++++|||++++++|+|
T Consensus 204 ~~~g~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa~~lla~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF~v~~~~l~T 283 (384)
T PLN02883 204 FKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVT 283 (384)
T ss_pred cccCcceEEEEECccccccCCCCCcccchhhhHHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEe
Confidence 88888888887776778999999999999889999999999999999999999997434799999999999999999999
Q ss_pred cCCCCCcccChHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHH
Q 019544 239 PATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYS 318 (339)
Q Consensus 239 P~l~~~iL~GItR~~vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~ 318 (339)
|+++.+|||||||+.|+++|+++|++|+|++|+++||.+|||+|+|||+.+|+||.+|++.++.+.+.-..||+|++|++
T Consensus 284 P~l~~~iLpGITR~svl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~I~PV~~I~~~~~~~~~~~~~G~vt~~L~~ 363 (384)
T PLN02883 284 PATSGTILGGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTRTEYKVGDGIVTQQLRS 363 (384)
T ss_pred CCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEeeeccChhheEEEEEEeccCceeecccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998765544222225899999999
Q ss_pred HHHHhHcCCCCCCCCCeeeCC
Q 019544 319 TLVGIQTGLIKDNKGWTVEIN 339 (339)
Q Consensus 319 ~~~~~~~~~~~d~~~w~~~~~ 339 (339)
+|.+||+|+++|++||+++|.
T Consensus 364 ~l~~iq~G~~~d~~~W~~~~~ 384 (384)
T PLN02883 364 ILLGIQTGSIQDTKDWVLQIA 384 (384)
T ss_pred HHHHHHcCCCCCCCCCeEeCC
Confidence 999999999999999999873
No 4
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=5.9e-66 Score=495.00 Aligned_cols=309 Identities=59% Similarity=1.020 Sum_probs=269.5
Q ss_pred CcccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCHHH
Q 019544 22 QIGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQ 101 (339)
Q Consensus 22 ~~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~ 101 (339)
.++|.||+++|.+++++ ++.|++|+||||||||+|+|+..+|++++|+|++|++||.+||++|+|+.|+.++
T Consensus 43 ~~~~~ng~~v~~~~a~i--------~~~drgl~yGDGvFEtir~y~~~~G~i~lf~l~~Hl~RL~~Sa~~L~i~~p~~~~ 114 (355)
T PLN03117 43 GESFSEGKIVPYGDISI--------SPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPPSLEQ 114 (355)
T ss_pred CCeEECCEEEEchhcee--------CcchhhhhhcceeEeeEEEEECCCCcEeeeCcHHHHHHHHHHHHHhCCCCCCHHH
Confidence 35677777777777777 5699999999999999999988899988899999999999999999999888999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCccccCCCcceEEEeeccccccCCCC
Q 019544 102 FIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGG 181 (339)
Q Consensus 102 l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~ 181 (339)
|.+.+.+++++|+.++|+...+.+|+|+.++|+++..|+.+..++.+++++.|.+.++.. .+++++.+++.+.|..|+.
T Consensus 115 l~~~i~~lv~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~-~~gi~l~~~~~~~r~~~~~ 193 (355)
T PLN03117 115 FVEAVKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHKA-SSGLNLKVDHKHRRAHSGG 193 (355)
T ss_pred HHHHHHHHHHhccccccCCCCCcEEEEEEEEEecCccCcCCCCCcEEEEEEEeccccccC-CCCEEEEEcCceEeCCCCC
Confidence 999999999999988776556688999988776655676655567788888887654432 2456665554577888888
Q ss_pred CCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHHHhC
Q 019544 182 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDC 261 (339)
Q Consensus 182 ~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a~~~ 261 (339)
++++|+++||+.+++++++|+++|+||+|++|.+++|+|+|++++|||+++|++|+||+++.+||+||||+.|+++|+++
T Consensus 194 l~~~K~~~nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNlF~v~~~~l~TP~l~~~iL~GItR~~vl~la~~~ 273 (355)
T PLN03117 194 TGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIVSTPPTSGTILPGVTRKSISELARDI 273 (355)
T ss_pred ccchhhhhhhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCCcCCCCCCHHHHHHHHHHHHC
Confidence 89999966999999999999999999999999732379999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcCCCCCCCCCeeeCC
Q 019544 262 GFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 339 (339)
Q Consensus 262 Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~~~~d~~~w~~~~~ 339 (339)
|++|+|+.++++||.+|||+|+|||+.+|+||.+|++.++.+.+....||+|++|+++|.++|+|+.+|++||+++||
T Consensus 274 Gi~v~Er~i~~~eL~~AdEvFltnT~~~I~PV~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~W~~~v~ 351 (355)
T PLN03117 274 GYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKKVKYRTGEEALSTKLHLILTNIQMGVVEDKKGWMVEID 351 (355)
T ss_pred CCEEEEEEccHHHHhhCCEEEEccCcceEEEEEEEEecCceEEeCCCCChHHHHHHHHHHHHhCCCCCCCCCCEEEcc
Confidence 999999999999999999999999999999999998765554443335899999999999999999999999999984
No 5
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-64 Score=468.22 Aligned_cols=325 Identities=51% Similarity=0.824 Sum_probs=300.7
Q ss_pred CccccccccccCcccceeeeee--hhcccc-c-----ccc--ccccCCcccchhcccceeeeeEEEeccCCeeeecChhh
Q 019544 11 SNWKLYMISFSQIGFWQIRFTT--SAKFKL-E-----LVI--FFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQ 80 (339)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~~~--~~~~~~-~-----i~p--~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~ 80 (339)
.++|..+++++.+.|++-.+|+ ..+.+. + |.| .+.++|.+..||||+++||++++||+.||++++||++.
T Consensus 38 ~~~k~~~~d~~~L~fg~~~td~m~~~k~~~~gw~~~~I~p~gni~~~Paa~vlhy~~~lfEG~KAyRt~d~~i~LFrPd~ 117 (379)
T KOG0975|consen 38 TDEKPAPIDWDELGFGLVFTDHMLTIKWSEDGWSQGEISPFGNLSLHPAAKVLHYGQGLFEGLKAYRTEDGKIRLFRPDQ 117 (379)
T ss_pred CCCccCcCCHHHhccCCcccceeEEEeccccCcCCCCccCcCCEeeChhhhceecchhhccccccccCCCCeEEEecchh
Confidence 3667777778889999999988 333331 1 667 78999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCcccc
Q 019544 81 NAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK 160 (339)
Q Consensus 81 Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~ 160 (339)
|+.|+.+||.++.||.|+.+++.+++.+++..++.|+|+...+++|||+++.|++..+|+.+.+++++++++.|.++||+
T Consensus 118 N~~Rm~~sA~r~~lP~p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l~Gt~~~Lgv~~~~e~~l~vi~spvg~yf~ 197 (379)
T KOG0975|consen 118 NMDRMLRSAERACLPSPDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLLIGTDPVLGVSPAPEATLFVIVSPVGPYFK 197 (379)
T ss_pred hHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeeeccCCcccccccCCcceEEEEEcccchhcc
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCE--EEc
Q 019544 161 EGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNI--IST 238 (339)
Q Consensus 161 ~g~~~~~l~~~~~~~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~--l~T 238 (339)
.|++++.|.++..++|++|+++++.|+++||+++++++.||+++||+++||||.+ +++|+|++++|||+|++|+ ++|
T Consensus 198 ~g~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLwL~~d-~~~ItEv~tmNiF~v~~n~~elvT 276 (379)
T KOG0975|consen 198 SGFKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLWLDGD-GGYITEVGTMNIFMVKKNEDELVT 276 (379)
T ss_pred ccccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEEEecC-CCceeeccceeEEEEEcCceeEec
Confidence 9999999999999999999999999999999999999999999999999999995 4599999999999999999 999
Q ss_pred cCCCCCcccChHHHHHHHHHHhCC-CcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCC----eEEeeCCCchHHH
Q 019544 239 PATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRG----KRIEFKTGAQSVS 313 (339)
Q Consensus 239 P~l~~~iL~GItR~~vi~~a~~~G-i~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~----~~i~~~~~~gp~t 313 (339)
||++..|||||||++++++|++.| ++|+||.++++|+.+|||+|.|||+..|.||..|.|.+ ++.-..|+.||++
T Consensus 277 Pp~dg~ILpGvTR~sileLa~~~g~~~V~Er~vtv~e~~~A~Evf~tGTA~~v~pV~~i~~~~~~i~~~~~~~g~~g~l~ 356 (379)
T KOG0975|consen 277 PPLDGTILPGVTRKSILELARDLGEFKVEERDVTVDELKTADEVFCTGTAAVVSPVGSILYKDEKIHIPTIGEGKEGPLA 356 (379)
T ss_pred CCCCCcccCCccHHHHHHHHHHhCceEEEEEEEeHHHhhhhHhhhcccceeeeccccceeecccccceeecCCCCccHHH
Confidence 999999999999999999999999 99999999999999999999999999999999999977 2221256699999
Q ss_pred HHHHHHHHHhHcCCCCCCCCCeee
Q 019544 314 RELYSTLVGIQTGLIKDNKGWTVE 337 (339)
Q Consensus 314 ~~L~~~~~~~~~~~~~d~~~w~~~ 337 (339)
++|++.|.++|+|. +|..+|++.
T Consensus 357 ~~l~~~l~~iq~g~-~~~~~w~~~ 379 (379)
T KOG0975|consen 357 KKLLSTLTDIQYGR-EPKKGWTVP 379 (379)
T ss_pred HHHHHHHHHhhcCC-cCCCCcccC
Confidence 99999999999999 899999863
No 6
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=9.9e-63 Score=473.38 Aligned_cols=307 Identities=44% Similarity=0.777 Sum_probs=268.0
Q ss_pred ccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCHHHHH
Q 019544 24 GFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFI 103 (339)
Q Consensus 24 ~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l~ 103 (339)
.|.||+++|.+++.++ +.|+||+||||||||+|+|++.+|++++|+|++|++||.+||++|+|+.++.++|.
T Consensus 41 ~~~nG~~vp~~~a~is--------~~Drg~~yGDGvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~L~i~~~~~~~l~ 112 (356)
T PRK13357 41 KWHDARLVPYGPLELD--------PAATVLHYGQEIFEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMPELPEELFL 112 (356)
T ss_pred cccCCeEeeCCCceeC--------cccchhhhcceeeeeEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 4899999999999995 59999999999999999998878988899999999999999999999866899999
Q ss_pred HHHHHHHHHcCCCCCC-CCCccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCccccCCCcceEEEeeccccccCCCCC
Q 019544 104 DAVKQTALANKRWVPP-PGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGA 182 (339)
Q Consensus 104 ~~i~~l~~~~~~~~p~-~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~~ 182 (339)
+.+.+++++|+.++++ ...+.+|+|++++++.+.+|+.+...+.+++++.|.++++..+.+++++.+...+.|..|+.+
T Consensus 113 ~~i~~li~~n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~v~l~~~~~~~r~~~~~l 192 (356)
T PRK13357 113 EAVKQLVKADRDWVPPYGEGASLYLRPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGT 192 (356)
T ss_pred HHHHHHHHhcccccCCCCCCccEEEEEEEEccCCcccccCCCccEEEEEEEechhhcccCCCceEEEEcCCeEecCCCCc
Confidence 9999999998754321 123478999988866555676555567888888887766555556777755546778888878
Q ss_pred CCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHHHhCC
Q 019544 183 GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCG 262 (339)
Q Consensus 183 ~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a~~~G 262 (339)
+++|+..||+.+++|+++|+++|+||+||+|++++|+|+|++++|||++++++|+|||++.+||+||||+.|+++|+++|
T Consensus 193 ~~~Kt~~nyl~~vla~~eA~~~G~deaL~ld~~~~G~V~E~s~sNlF~v~~~~l~TPpl~~giL~GItR~~vlela~~~G 272 (356)
T PRK13357 193 GAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPLSGSILPGITRDSLLQLAEDLG 272 (356)
T ss_pred chhhcccccHHHHHHHHHHHHCCCCEEEEEcCCCCCEEEEcCcEEEEEEECCEEEECCCCCCCCcchHHHHHHHHHHHCC
Confidence 99999449999999999999999999999995226999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecChhh------HhcccEEEEecCccceEEEEEEEeC--CeEEeeCCCchHHHHHHHHHHHHhHcCCCCCCCCC
Q 019544 263 FQVEERAIPVDE------LLEADEVFCTGTAVVVAPVGSITYR--GKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGW 334 (339)
Q Consensus 263 i~v~e~~i~~~e------L~~adevfltnt~~~i~pV~~I~~~--~~~i~~~~~~gp~t~~L~~~~~~~~~~~~~d~~~w 334 (339)
++|+|++++++| |.+|||+|+|||+.+|+||++|+++ ++.++ +|++||++++|+++|.+.++|+.++.++|
T Consensus 273 i~v~e~~i~~~el~~~~~L~~AdevFltnS~~gi~PV~~id~~~~~~~~~-~g~~g~~t~~L~~~~~~~~~~~~~~~~~w 351 (356)
T PRK13357 273 LTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKYKDKEFVIG-DGEVGPVTQKLYDELTGIQFGDVEDPHGW 351 (356)
T ss_pred CeEEEEecCHHHhhhhhccCcceEEEEcccccEEEEEEEEEeCCCEEEcC-CCCCChHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999999999 8999999999999999999999753 34553 56799999999999999999999999999
Q ss_pred eeeCC
Q 019544 335 TVEIN 339 (339)
Q Consensus 335 ~~~~~ 339 (339)
.++|.
T Consensus 352 ~~~~~ 356 (356)
T PRK13357 352 IVKVD 356 (356)
T ss_pred cEeCc
Confidence 99874
No 7
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=1.7e-62 Score=465.16 Aligned_cols=304 Identities=46% Similarity=0.788 Sum_probs=265.1
Q ss_pred cceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCHHHHHH
Q 019544 25 FWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 104 (339)
Q Consensus 25 ~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~ 104 (339)
|.||+++|.+++.++ +.|+||+||||||||+|+|+.++|++++|+|++|++||.+||++|+|+.++.+++.+
T Consensus 1 ~~nG~~~~~~~a~i~--------~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~~~~~~l~~ 72 (313)
T TIGR01123 1 WHNGRLTPYGPLHLD--------PGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLE 72 (313)
T ss_pred CCCCEEEECccCeeC--------cchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 679999999999995 599999999999999999977789988899999999999999999998778999999
Q ss_pred HHHHHHHHcCCCCCCC-CCccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCccccCCCcceEEEeeccccccCCCCCC
Q 019544 105 AVKQTALANKRWVPPP-GKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAG 183 (339)
Q Consensus 105 ~i~~l~~~~~~~~p~~-~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~~~ 183 (339)
.+.+++++|+.++++. ..+.+|+|++++++++.+|+.+...+.+++++.|.+.++..|++++++.....+.|..|..++
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~ir~~v~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~ 152 (313)
T TIGR01123 73 ALRQLVKANKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFASPVGAYFKGGLAPVSIFVTTEYDRAAPGGTG 152 (313)
T ss_pred HHHHHHHHccccCCCCCCCCcEEEEeEEEecCCccccCCCCccEEEEEEEEchhhccccccceeEEecccceecCCCCCc
Confidence 9999999987654321 234789999888666566776555677888888877666667666665444567777777789
Q ss_pred CcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCe--EEecCceeEEEEEC-CEEEccCCCCCcccChHHHHHHHHHHh
Q 019544 184 GVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKN--LEEVSSCNIFILKG-NIISTPATSGTILAGITRKSIIEIASD 260 (339)
Q Consensus 184 ~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~--v~E~s~sNif~v~~-g~l~TP~l~~~iL~GItR~~vi~~a~~ 260 (339)
++|+..||+.+++|+++|+++|+||+||+|+ +|+ |+|++++|||++++ |+|+|||++.+||+||||+.|+++|++
T Consensus 153 ~~K~~~nyl~~vla~~eA~~~g~deal~ld~--~g~g~v~E~~~sNlf~v~~~g~l~Tp~l~~~~L~GItR~~vi~l~~~ 230 (313)
T TIGR01123 153 AVKVGGNYAASLLAQAKAAEQGCDQVVYLDP--VEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKD 230 (313)
T ss_pred cceeccccHHHHHHHHHHHHCCCCEEEEEeC--CCCeEEEEcCcEeEEEEEcCCEEEeCCCCCCCCcchHHHHHHHHHHH
Confidence 9999459999999999999999999999998 555 99999999999985 799999999999999999999999999
Q ss_pred CCCcEEEEecChhhHhcc----cEEEEecCccceEEEEEEEeCCeEEe-eCCCchHHHHHHHHHHHHhHcCCCCCCCCCe
Q 019544 261 CGFQVEERAIPVDELLEA----DEVFCTGTAVVVAPVGSITYRGKRIE-FKTGAQSVSRELYSTLVGIQTGLIKDNKGWT 335 (339)
Q Consensus 261 ~Gi~v~e~~i~~~eL~~a----devfltnt~~~i~pV~~I~~~~~~i~-~~~~~gp~t~~L~~~~~~~~~~~~~d~~~w~ 335 (339)
+|++|+|++|+++||.+| ||+|+|||+.+|+||.+|++|++.+. .+|++||++++|+++|.++++|+.++..+|+
T Consensus 231 ~Gi~v~e~~i~~~~l~~A~~~~devfltnS~~gi~PV~~i~~d~~~~~~~~g~~g~~~~~l~~~~~~~~~~~~~~~~~w~ 310 (313)
T TIGR01123 231 LGMEVEERRIDIDELKAFVEAGEEVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVTKALYDELTDIQYGDFEDPYGWI 310 (313)
T ss_pred cCCeEEEEecCHHHHHHHHhcCCEEEEccCceEEEEEEEEEECCeEEEcCCCCCChHHHHHHHHHHHHhcCCCCCCCCCe
Confidence 999999999999999999 99999999999999999966677632 2567999999999999999999888999999
Q ss_pred eeC
Q 019544 336 VEI 338 (339)
Q Consensus 336 ~~~ 338 (339)
++|
T Consensus 311 ~~~ 313 (313)
T TIGR01123 311 VEV 313 (313)
T ss_pred eeC
Confidence 986
No 8
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=6.2e-61 Score=453.17 Aligned_cols=296 Identities=30% Similarity=0.490 Sum_probs=255.7
Q ss_pred cCcccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CH
Q 019544 21 SQIGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SI 99 (339)
Q Consensus 21 ~~~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~ 99 (339)
+.++|.||++++.+++.++ +.|++|+||||||||+|++++++|.. +|+|++|++||.+||+.|+|+.| +.
T Consensus 6 ~~~~~~nG~~~~~~~~~i~--------~~drg~~~GdgvFEtir~~~g~~~~~-~~~l~~Hl~RL~~Sa~~l~i~~~~~~ 76 (306)
T PRK06606 6 AGYIWFNGELVPWEDAKVH--------VLTHALHYGTGVFEGIRAYDTPKGPA-IFRLREHTKRLFNSAKILRMEIPYSV 76 (306)
T ss_pred CCcEEECCEEEEhHHcccC--------hhhhhhhhcceeEEEEEEecCCCCCe-eeChHHHHHHHHHHHHHhCCCCCCCH
Confidence 3478999999999998885 49999999999999999998876663 67899999999999999999987 78
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCC-CCeEEEEEEeeCCcccc-CCC-cceEEEeeccccc
Q 019544 100 DQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA-PEYTFLVFASPVGNYFK-EGL-APLNLYVEDEFHR 176 (339)
Q Consensus 100 ~~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~-~~~~~~i~~~p~~~~~~-~g~-~~~~l~~~~~~~r 176 (339)
+++.+.+.++++.++. ...+||++++++.+.+|+.+. ..+.+++++.|.+.++. .+. +++++.++ ++.|
T Consensus 77 ~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~l~~~-~~~r 148 (306)
T PRK06606 77 DELMEAQREVVRKNNL-------KSAYIRPLVFVGDEGLGVRPHGLPTDVAIAAWPWGAYLGEEALEKGIRVKVS-SWTR 148 (306)
T ss_pred HHHHHHHHHHHHhcCC-------CCEEEEEEEEecCCccCcCCCCCCceEEEEEeccccccCcccccCCeEEEEe-eEec
Confidence 9999999999998863 367899888865555666543 35677787877654332 111 35566544 4667
Q ss_pred cCCCC-CCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHH
Q 019544 177 ATPGG-AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSII 255 (339)
Q Consensus 177 ~~p~~-~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi 255 (339)
..+.. ++.+|+..||+.+++++++|+++|+||+||+|+ +|+|+|++++|||++++|+|+|||++.|||+||||+.|+
T Consensus 149 ~~~~~~~~~~K~~~nyl~~vla~~ea~~~G~de~l~l~~--~g~v~E~~~sNlf~v~~~~l~TP~~~~giL~GitR~~vl 226 (306)
T PRK06606 149 HAPNSIPTRAKASGNYLNSILAKTEARRNGYDEALLLDV--EGYVSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVI 226 (306)
T ss_pred CCCCCcCcchhhhhccHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCceEEEEEECCEEECCCCcCCcCCCHHHHHHH
Confidence 66654 578997569999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcCCCCCCCCCe
Q 019544 256 EIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWT 335 (339)
Q Consensus 256 ~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~~~~d~~~w~ 335 (339)
++|+++|++|+|++++++||.+|||+|+|||++||+||.+|+ ++.++ +|++||++++|+++|.+.+.++.+|..+|+
T Consensus 227 ~~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~gi~PV~~id--~~~~~-~g~~g~~~~~L~~~~~~~~~~~~~~~~~~~ 303 (306)
T PRK06606 227 TLAKDLGIEVIERRITRDELYIADEVFFTGTAAEVTPIREVD--GRQIG-NGKRGPITEKLQSAYFDIVRGRTEKYAHWL 303 (306)
T ss_pred HHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEEC--cEECC-CCCCCHHHHHHHHHHHHHHcCCCCCCCCCc
Confidence 999999999999999999999999999999999999999994 88873 678999999999999999999999999998
Q ss_pred eeC
Q 019544 336 VEI 338 (339)
Q Consensus 336 ~~~ 338 (339)
.++
T Consensus 304 ~~~ 306 (306)
T PRK06606 304 TPV 306 (306)
T ss_pred ccC
Confidence 764
No 9
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=6.2e-61 Score=451.68 Aligned_cols=292 Identities=31% Similarity=0.502 Sum_probs=251.7
Q ss_pred cceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CHHHHH
Q 019544 25 FWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFI 103 (339)
Q Consensus 25 ~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~~~l~ 103 (339)
|.||++++..++.++ +.|+||+||||+|||+|+|++.+|. .+|+|++|++||.+||+.|+|+.| +.+++.
T Consensus 1 ~~ng~~v~~~~~~i~--------~~drg~~~GdgvFEt~r~~~g~~~~-~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~ 71 (298)
T TIGR01122 1 WMDGEFVDWEDAKVH--------VLTHALHYGTGVFEGIRAYDTDKGP-AIFRLKEHIQRLYDSAKIYRMEIPYSKEELM 71 (298)
T ss_pred CcCCEEEEhhhcccC--------hhhhhhhccceEEEEEEEEcCCCcc-eeeChHHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 579999999998885 5999999999999999999653332 378899999999999999999987 899999
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCC--CCeEEEEEEeeCCccccCC--CcceEEEeeccccccCC
Q 019544 104 DAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATP 179 (339)
Q Consensus 104 ~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~--~~~~~~i~~~p~~~~~~~g--~~~~~l~~~~~~~r~~p 179 (339)
+.+.+++++++. ...+||++++++.+.+|+.+. .++++++++.|.+.++... .+++++.+. ++.|..+
T Consensus 72 ~~i~~~i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~-~~~r~~~ 143 (298)
T TIGR01122 72 EATRETLRKNNL-------RSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVS-SWRRNAP 143 (298)
T ss_pred HHHHHHHHhcCC-------CCEEEEEEEEEccCCCCcCCCCCCCceEEEEEeccccccCcccccCCeEEEEE-EEEcCCC
Confidence 999999998863 357899888755555676552 3577888888775533210 135556554 5677766
Q ss_pred CCC-CCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHH
Q 019544 180 GGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIA 258 (339)
Q Consensus 180 ~~~-~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a 258 (339)
..+ +++|+.+||+.+++|+++|+++|+||+||+|+ +|+|+|++++|||++++|+|+|||++.++|+||||+.|+++|
T Consensus 144 ~~~~~~~K~~~~yl~~v~a~~~a~~~g~de~l~ld~--~g~v~E~s~sNlf~v~~~~l~TP~~~~~~L~GItR~~il~la 221 (298)
T TIGR01122 144 NTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDV--EGYVAEGSGENIFIVKDGVLFTPPVTSSILPGITRDTVITLA 221 (298)
T ss_pred CCcCccchhhhhhHHHHHHHHHHHHcCCCEEEEECC--CCCEEECCceEEEEEECCEEECCCCCCCcCcchHHHHHHHHH
Confidence 654 79999755999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred HhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcCCCCCCCCCeeeC
Q 019544 259 SDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEI 338 (339)
Q Consensus 259 ~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~~~~d~~~w~~~~ 338 (339)
+++|++|+|+.++++||.+|||+|+|||++||+||.+|+ ++.++ ++++||+|++|+++|.++++++.+|+++|+.+|
T Consensus 222 ~~~g~~v~e~~i~~~eL~~adevfltns~~gv~PV~~id--~~~~~-~~~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~~ 298 (298)
T TIGR01122 222 KELGIEVVEQPISREELYTADEAFFTGTAAEITPIREVD--GRKIG-NGRRGPVTKKLQEAFFDLVTGGTEDYWGWLTYV 298 (298)
T ss_pred HHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEEC--CEECC-CCCCChHHHHHHHHHHHHHcCCCCCcCCCceeC
Confidence 999999999999999999999999999999999999994 78873 678999999999999999999999999999865
No 10
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=2.2e-57 Score=423.58 Aligned_cols=275 Identities=48% Similarity=0.774 Sum_probs=235.4
Q ss_pred cCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccE
Q 019544 46 KKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSL 125 (339)
Q Consensus 46 ~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~l~~~~~~~~p~~~~~~~ 125 (339)
+++.|+||+||||||||+|+|+..||+.++|+|++|++||.+||+.|+|+.++.+++.+.+.++++.|+.|.|.......
T Consensus 2 i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~~i~~~~~~~~~~~~~~~ 81 (279)
T cd01557 2 LHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGASL 81 (279)
T ss_pred cCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCE
Confidence 46789999999999999999974445434788999999999999999999448999999999999999877654434578
Q ss_pred EEEEEEeecCCccccCCCCCeEEEEEEeeCCccccCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCC
Q 019544 126 YIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG 205 (339)
Q Consensus 126 ~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g 205 (339)
+||+.++++.+.+|+.+...++++++..|.++++....+++++.+. ++.|..|...+.+|+..||+.+++|+++|+++|
T Consensus 82 ~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~g 160 (279)
T cd01557 82 YIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEKGVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEKG 160 (279)
T ss_pred EEEEEEEeccccCCcCCCCccEEEEEEEEccccccCCCCCeEEEEe-eEEcCCCCCCcccchhhccHHHHHHHHHHHHCC
Confidence 9999888665556765545677888888876654322245566554 577777755678997459999999999999999
Q ss_pred CCeEEEEccCCC-CeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEe
Q 019544 206 FSDVLYLDSVNK-KNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 284 (339)
Q Consensus 206 ~de~Llld~~~~-g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a~~~Gi~v~e~~i~~~eL~~adevflt 284 (339)
+||+||+|+ + |+|+|++++|||++++|+|+|||++.++|+||||+.|+++|+++|++|+|++++++||.+|||+|+|
T Consensus 161 ~de~l~ld~--~~g~v~E~~~sNlf~v~~~~l~TP~~~~~~L~Gitr~~v~~~~~~~Gi~v~e~~i~~~~l~~ade~f~~ 238 (279)
T cd01557 161 YDQALWLDG--AHGYVAEVGTMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFAT 238 (279)
T ss_pred CCEEEEEcC--CCCEEEEeCcEEEEEEECCEEEcCCCcCCCCCchHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEe
Confidence 999999998 7 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccceEEEEEEEeCCeEE--eeCCCchHHHHHHHHHHHHhHcC
Q 019544 285 GTAVVVAPVGSITYRGKRI--EFKTGAQSVSRELYSTLVGIQTG 326 (339)
Q Consensus 285 nt~~~i~pV~~I~~~~~~i--~~~~~~gp~t~~L~~~~~~~~~~ 326 (339)
||+.||+||++|+ ++.+ + ++++||+|++|+++|.+.++|
T Consensus 239 ns~~gi~pV~~i~--~~~~~~~-~~~~gp~~~~l~~~~~~~~~~ 279 (279)
T cd01557 239 GTAAVVTPVGEID--YRGKEPG-EGEVGPVTKKLYDLLTDIQYG 279 (279)
T ss_pred cceeEEEEEEEEc--cccccCC-CCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999995 7665 3 467999999999999998876
No 11
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=2.1e-57 Score=427.67 Aligned_cols=277 Identities=26% Similarity=0.401 Sum_probs=239.8
Q ss_pred cCcccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CH
Q 019544 21 SQIGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SI 99 (339)
Q Consensus 21 ~~~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~ 99 (339)
+.++|.||++++..++.++ +.|++|+||||||||+|++ +|+ +|+|++|++||.+||++|+|+.| +.
T Consensus 3 ~~~~~~nG~~~~~~~~~i~--------~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~ 69 (299)
T PRK12479 3 NQYIYMNGEFVEKEKAVVS--------VYDHGFLYGDGVFEGIRSY---GGN--VFCLKEHVKRLYESAKSILLTIPLTV 69 (299)
T ss_pred CcEEEECCEEeEHHHCccc--------cccchhheeeeEEEEEEEE---CCE--ecCHHHHHHHHHHHHHHhCCCCCCCH
Confidence 5678999999999999985 5999999999999999997 566 68899999999999999999988 79
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCC--CCeEEEEEEeeCCc----cccCCCcceEEEeecc
Q 019544 100 DQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGN----YFKEGLAPLNLYVEDE 173 (339)
Q Consensus 100 ~~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~--~~~~~~i~~~p~~~----~~~~g~~~~~l~~~~~ 173 (339)
+++.+.+.++++.++. ...+||+.++++.+.+|+.+. .++.+++++.|.+. ++.+|+ ++.+. .
T Consensus 70 ~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~g~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv---~~~~~-~ 138 (299)
T PRK12479 70 DEMEEAVLQTLQKNEY-------ADAYIRLIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGL---SVVSV-A 138 (299)
T ss_pred HHHHHHHHHHHHHcCC-------CCeEEEEEEEecCCCCCCCCccCCCceEEEEEEEcccCChhHHhCCe---EEEEE-e
Confidence 9999999999998763 356888888765556666543 35678888887643 234454 34333 4
Q ss_pred ccccCCCCC-CCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHH
Q 019544 174 FHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRK 252 (339)
Q Consensus 174 ~~r~~p~~~-~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~ 252 (339)
+.|..|+.+ +.+|+. ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||++++|+|+|||++.|+|+||||+
T Consensus 139 ~~r~~~~~~~~~~K~~-nyl~~vla~~ea~~~g~de~l~ld~--~g~v~E~s~sNlf~v~~~~l~TP~l~~giL~GItR~ 215 (299)
T PRK12479 139 SRRNTPDALDPRIKSM-NYLNNVLVKIEAAQAGVLEALMLNQ--QGYVCEGSGDNVFVVKDGKVLTPPSYLGALEGITRN 215 (299)
T ss_pred EeccCCCccCccchhh-hhHHHHHHHHHHHHcCCCEEEEEcC--CCcEEECCceEEEEEECCEEEeCCCcCCCCcCHHHH
Confidence 667666655 689996 9999999999999999999999998 899999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcCC
Q 019544 253 SIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGL 327 (339)
Q Consensus 253 ~vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~~ 327 (339)
.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||.+| |++.++ ++++||+|++|+++|.+...+.
T Consensus 216 ~il~~~~~~g~~v~e~~i~~~~L~~adevfltnS~~gi~PV~~i--d~~~~~-~~~~g~~~~~l~~~~~~~~~~~ 287 (299)
T PRK12479 216 SVIELCERLSIPCEERPFTRHDVYVADEVFLTGTAAELIPVVKV--DSREIG-DGKPGSVTKQLTEEFKKLTRER 287 (299)
T ss_pred HHHHHHHHcCCeEEEEeCCHHHHHhCCeeeeecCcccEEEEEEE--CCEEcC-CCCcCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999 488873 6789999999999998877664
No 12
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=2.5e-56 Score=418.45 Aligned_cols=275 Identities=30% Similarity=0.476 Sum_probs=235.5
Q ss_pred CcccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CHH
Q 019544 22 QIGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SID 100 (339)
Q Consensus 22 ~~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~~ 100 (339)
.++|.||++++..++.+++ .|++|+||||+|||++++ +|+ +|+|++|++||.+||++|+|+.| +.+
T Consensus 3 ~~~~~nG~~~~~~~~~i~~--------~drg~~~GdgvFEt~~v~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~ 69 (288)
T PRK08320 3 QLIYLNGEFVPKEEAKVSV--------FDHGFLYGDGVFEGIRAY---NGR--VFRLKEHIDRLYDSAKAIMLEIPLSKE 69 (288)
T ss_pred eEEEECCEEEEHHHCcccc--------cchhhhhcceEEEEEEEE---CCE--eecHHHHHHHHHHHHHhhCCCCCCCHH
Confidence 3689999999999999954 899999999999999997 666 67899999999999999999887 789
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCC--CCeEEEEEEeeCCcc----ccCCCcceEEEeeccc
Q 019544 101 QFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNY----FKEGLAPLNLYVEDEF 174 (339)
Q Consensus 101 ~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~--~~~~~~i~~~p~~~~----~~~g~~~~~l~~~~~~ 174 (339)
++.+.+.+++++++. ...+||+.++++.+.+|+.+. ..+.++++..|.+.+ +.+|++ +... .+
T Consensus 70 ~l~~~i~~~i~~~~~-------~~~~iri~v~rg~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~-~~ 138 (288)
T PRK08320 70 EMTEIVLETLRKNNL-------RDAYIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPIGLYPGELYEKGLK---VITV-ST 138 (288)
T ss_pred HHHHHHHHHHHhcCC-------CCEEEEEEEEECCCcCCCCcccCCCceEEEEEEEcCcCChhHHhcCeE---EEEE-ee
Confidence 999999999998763 356888888765556676543 345677777765432 234543 4333 35
Q ss_pred cccCCCCC-CCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHH
Q 019544 175 HRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKS 253 (339)
Q Consensus 175 ~r~~p~~~-~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~ 253 (339)
.|..++.+ +++|+. ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||++++|+|+|||++.++|+||||+.
T Consensus 139 ~r~~~~~~~~~~K~~-nyl~~v~a~~~A~~~g~de~L~ld~--~g~v~E~s~sNlf~~~~~~l~TP~~~~~~L~GitR~~ 215 (288)
T PRK08320 139 RRNRPDALSPQVKSL-NYLNNILAKIEANLAGVDEAIMLND--EGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNA 215 (288)
T ss_pred eccCCCCcCccchhh-hhHHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCcEEEEEEECCEEECCCCcCCCCcCHHHHH
Confidence 66665544 689996 9999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcC
Q 019544 254 IIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 326 (339)
Q Consensus 254 vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~ 326 (339)
++++|+++|++|+|+.++++||.+|||+|+|||++||+||.+|+ ++.+ .++++||++++|+++|.+....
T Consensus 216 ll~~~~~~g~~v~e~~l~~~dL~~ade~f~~ns~~gv~pV~~i~--~~~~-~~~~~g~~~~~l~~~~~~~~~~ 285 (288)
T PRK08320 216 VIEIAKELGIPVREELFTLHDLYTADEVFLTGTAAEVIPVVKVD--GRVI-GDGKPGPITKKLLEEFRELTKK 285 (288)
T ss_pred HHHHHHHcCCeEEEEECCHHHHHhCCEEEEecChhhEEEEEEEC--CEEC-CCCCcCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999994 7777 3678999999999999876543
No 13
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=2.6e-56 Score=417.39 Aligned_cols=273 Identities=22% Similarity=0.309 Sum_probs=233.2
Q ss_pred cccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CHHH
Q 019544 23 IGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQ 101 (339)
Q Consensus 23 ~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~~~ 101 (339)
++|.||++++..++.++ +.|+||+||||+|||+|+| +|+ +|+|++|++||.+||+.|+++.| +.+.
T Consensus 1 ~~~~nG~~~~~~~~~v~--------~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~ 67 (283)
T PRK07650 1 LIYVNGQYVEEEEARIS--------PFDHGYLYGLGVFETFRIY---NGH--PFLLDDHYDRLNDALDTLQIEWTMTKDE 67 (283)
T ss_pred CEEECCEEeEHHHCeec--------ccccccccccEEEEEEEEE---CCE--EEcHHHHHHHHHHHHHHhCCCCCCCHHH
Confidence 46899999999999995 4899999999999999997 666 56799999999999999999987 7899
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCC--CCeEEEEEEeeCCccc-cCCCcceEEEeeccccccC
Q 019544 102 FIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYF-KEGLAPLNLYVEDEFHRAT 178 (339)
Q Consensus 102 l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~--~~~~~~i~~~p~~~~~-~~g~~~~~l~~~~~~~r~~ 178 (339)
+.+.+.++++.++. ...+||+.++++.+..++.+. ..++++++..|.++.. ..+...+.+ .+.|..
T Consensus 68 l~~~l~~~~~~~~~-------~~~~iRl~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~ 136 (283)
T PRK07650 68 VLLILKNLLEKNGL-------ENAYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPGLPAEKEGVVL----KQRRNT 136 (283)
T ss_pred HHHHHHHHHHhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEEcCCCCChhhcCeEEEE----EEEecC
Confidence 99999999988752 357889888755444555433 4567888888764321 111122222 345666
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHH
Q 019544 179 PGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIA 258 (339)
Q Consensus 179 p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a 258 (339)
++.++++|+. ||+.+++++++|++.|+||+||+|+ +|+|+|++++|||++++|+|+|||++.|+|+||||+.++++|
T Consensus 137 ~~~~~~~Kt~-~y~~~v~a~~~a~~~g~de~llln~--~G~v~E~s~sNif~v~~g~l~TP~l~~g~L~GitR~~li~~~ 213 (283)
T PRK07650 137 PEGAFRLKSH-HYLNNILGKREIGNDPNKEGIFLTE--EGYVAEGIVSNLFWVKGDIVYTPSLETGILNGITRAFVIKVL 213 (283)
T ss_pred CCCCcchhHH-hHHHHHHHHHHHHHcCCCeEEEECC--CCeEEEcCceEEEEEECCEEEcCCCcCCCcccHHHHHHHHHH
Confidence 6678899996 9999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred HhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcC
Q 019544 259 SDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 326 (339)
Q Consensus 259 ~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~ 326 (339)
+++|++|+|+.++++||..|||+|+|||++||+||.+| |++.+ .|++||++++|+++|.+.+..
T Consensus 214 ~~~g~~v~e~~i~~~dL~~adeifl~ns~~gv~pV~~i--~~~~~--~g~~g~~~~~l~~~~~~~~~~ 277 (283)
T PRK07650 214 EELGIEVKEGFYTKEELLSADEVFVTNSIQEIVPLTRI--EERDF--PGKVGMVTKRLQNLYEMQREK 277 (283)
T ss_pred HHcCCeEEEEecCHHHHhhCCEeeeecCcccEEEEEEE--CCEEe--CCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 47776 468999999999999886655
No 14
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=2.2e-56 Score=419.57 Aligned_cols=277 Identities=27% Similarity=0.419 Sum_probs=234.0
Q ss_pred CcccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CHH
Q 019544 22 QIGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SID 100 (339)
Q Consensus 22 ~~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~~ 100 (339)
.++|.||++++..++.++ +.|+||+||||||||+|+| +|+ +|+|++|++||.+||+.|+|+.| +.+
T Consensus 9 ~~~~~nG~~~~~~~~~i~--------~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~~~~~~ 75 (292)
T PRK07544 9 GFIWMDGELVPWRDAKVH--------VLTHGLHYASSVFEGERAY---GGK--IFKLREHSERLRRSAELLDFEIPYSVA 75 (292)
T ss_pred CeEEECCEEEEhHHCccC--------hhhhHhhhcceeEEeeEee---CCc--ccChHHHHHHHHHHHHHhCCCCCCCHH
Confidence 467999999999998885 4899999999999999998 565 68899999999999999999987 789
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCC-CCeEEEEEEeeCCcccc--CCCcceEEEeecccccc
Q 019544 101 QFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA-PEYTFLVFASPVGNYFK--EGLAPLNLYVEDEFHRA 177 (339)
Q Consensus 101 ~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~-~~~~~~i~~~p~~~~~~--~g~~~~~l~~~~~~~r~ 177 (339)
.+.+.+.++++.|+. ...+||++++++.+..|+.+. ..+.+++...|.+.++. .+.+++++.++ .+.|.
T Consensus 76 ~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~gv~l~~~-~~~r~ 147 (292)
T PRK07544 76 EIDAAKKETLAANGL-------TDAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRLDIA-KWRRP 147 (292)
T ss_pred HHHHHHHHHHHhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEeccccccCccccCCCEEEEEe-EEEcC
Confidence 999999999998863 356888888755545565433 34456666655443322 22345666554 46676
Q ss_pred CCCCC-CCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHH
Q 019544 178 TPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIE 256 (339)
Q Consensus 178 ~p~~~-~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~ 256 (339)
.|..+ ..+|+.+||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+||+++ ++|+||||+.|++
T Consensus 148 ~~~~~~~~~k~~~~yl~~vla~~~A~~~G~deal~ld~--~g~V~E~~~sNlf~v~~~~l~TP~~~-~~L~GItR~~vl~ 224 (292)
T PRK07544 148 DPETAPSAAKAAGLYMICTISKHAAEAKGYADALMLDY--RGYVAEATGANIFFVKDGVIHTPTPD-CFLDGITRQTVIE 224 (292)
T ss_pred CCCCcCHhhhhhcccHHHHHHHHHHHHcCCCeEEEECC--CCCEEEcCceEEEEEECCEEECCCCc-ccccchhHHHHHH
Confidence 66554 46687778999999999999999999999998 89999999999999999999999985 5999999999999
Q ss_pred HHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcCCC
Q 019544 257 IASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLI 328 (339)
Q Consensus 257 ~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~~~ 328 (339)
+|+++|++|+|++++++||.+|||+|+|||++||+||++|+ ++.+ .+||++++|+++|.+..++|.
T Consensus 225 ~a~~~g~~v~e~~i~~~eL~~adevfltnS~~gi~PV~~i~--~~~~----~~g~~~~~l~~~~~~~~~~~~ 290 (292)
T PRK07544 225 LAKRRGIEVVERHIMPEELAGFSECFLTGTAAEVTPVSEIG--EYRF----TPGAITRDLMDDYEALVRPRA 290 (292)
T ss_pred HHHHcCCeEEEEecCHHHHhhcCceeecCccceEEEEEEEe--eEEe----CCChHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999995 6665 279999999999998887764
No 15
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=3.5e-56 Score=417.02 Aligned_cols=273 Identities=25% Similarity=0.378 Sum_probs=227.2
Q ss_pred cccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CHHH
Q 019544 23 IGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQ 101 (339)
Q Consensus 23 ~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~~~ 101 (339)
++|.||++++.+.+.++ +.|++|+||||||||+|+| +|+ +|+|++|++||.+||++|+|+.| +.++
T Consensus 8 ~~~~nG~~~~~~~~~i~--------~~drg~~yGdgvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~ 74 (286)
T PRK13356 8 WTFFDGEWHEGNVPIMG--------PADHAAWLGSTVFDGARAF---EGV--TPDLDLHCARVNRSAEALGLKPTVSAEE 74 (286)
T ss_pred eEEECCEEcchhhcccc--------cccchhhhcceeEEEEEEe---cCC--CCCHHHHHHHHHHHHHHhCCCCCCCHHH
Confidence 57899999999888884 5999999999999999998 555 67899999999999999999876 8999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCcc-ccCCC-CCeEEEEEEeeCCccccCCCcceEEEeeccccccCC
Q 019544 102 FIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPIL-GLAPA-PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATP 179 (339)
Q Consensus 102 l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~-~~~~~-~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p 179 (339)
+.+.+.+++++++. ....+||++++++.+.. +..+. ..+.+.+...+.+..... ++++.++ ++.|..+
T Consensus 75 l~~~i~~~i~~~~~------~~~~~ir~~v~rg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---gv~l~~~-~~~r~~~ 144 (286)
T PRK13356 75 IEALAREGLKRFDP------DTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEPT---GFSLTLS-PFRRPTL 144 (286)
T ss_pred HHHHHHHHHHHcCC------CCcEEEEEEEEeccCcccCcCCCcCCceEEEEEEccCCCCCC---cEEEEEe-eeecCCC
Confidence 99999999998763 23578898877443322 33332 234444445443322223 4556544 5677655
Q ss_pred CCC-CCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHH
Q 019544 180 GGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIA 258 (339)
Q Consensus 180 ~~~-~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a 258 (339)
..+ .++|+.+||+.+++|+++|+++|+||+||+|+ +|+|+|++++|||++++|+|+||+++.++|+||||+.|+++|
T Consensus 145 ~~~~~~~K~~~nyl~~vla~~ea~~~g~deal~ld~--~G~v~E~~~sNlf~v~~~~l~TP~~~~~~L~GItR~~vi~~a 222 (286)
T PRK13356 145 EMAPTDAKAGCLYPNNARALREARSRGFDNALVLDM--LGNVAETATSNVFMVKDGVVFTPVPNGTFLNGITRQRVIALL 222 (286)
T ss_pred CCCCccceeccchHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCceEEEEEECCEEEcCCCCCCcccCHHHHHHHHHH
Confidence 544 67897679999999999999999999999998 799999999999999999999999999999999999999999
Q ss_pred HhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcC
Q 019544 259 SDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 326 (339)
Q Consensus 259 ~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~ 326 (339)
+++|++|+|++++++||.+|||+|+|||+.||+||++| |++.+ .+||+|++|+++|.+.+++
T Consensus 223 ~~~gi~v~e~~i~~~eL~~adevfltns~~gi~PV~~i--d~~~~----~~g~~~~~l~~~~~~~~~~ 284 (286)
T PRK13356 223 REDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTRF--DDRSL----QPGPVTRRARELYWDWAHG 284 (286)
T ss_pred HHcCCeEEEEecCHHHHHhcCceEEecChheEEEEEEE--CCEEe----cCChHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999 47776 2699999999999875543
No 16
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=3.3e-55 Score=411.11 Aligned_cols=276 Identities=19% Similarity=0.278 Sum_probs=223.7
Q ss_pred ccCcccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-C
Q 019544 20 FSQIGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-S 98 (339)
Q Consensus 20 ~~~~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~ 98 (339)
++.++|+||+++|..++...| ++.|+||+||||||||+|++ +|+ +|+|++|++||.+||++|+|+.| +
T Consensus 3 ~~~~~~~ng~~v~~~~~~~~i------~~~drgl~yGdgvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~L~i~~p~~ 71 (290)
T PRK12400 3 YERFVLWNDAVIDTTKQKTYI------ELEERGLQFGDGVYEVIRLY---KGN--FHLLDPHITRLYRSMEEIELTLPFS 71 (290)
T ss_pred cccEEEECCEEechHHcCcee------ccccchhhhcceEEEEEEEE---CCE--ecccHHHHHHHHHHHHHhCCCCCCC
Confidence 456899999999988655211 45999999999999999997 566 57789999999999999999988 7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCC--CCCeEEEEEEeeCCc---cccCCCcceEEEeecc
Q 019544 99 IDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP--APEYTFLVFASPVGN---YFKEGLAPLNLYVEDE 173 (339)
Q Consensus 99 ~~~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~--~~~~~~~i~~~p~~~---~~~~g~~~~~l~~~~~ 173 (339)
.+++.+.+.++++.++. ....+||+.++++.+..+..+ ...++++++..+.+. +..+|+ ++....
T Consensus 72 ~~~l~~~l~~~~~~~~~------~~~~~iri~v~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~- 141 (290)
T PRK12400 72 KAELITLLYKLIENNNF------HEDGTIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPALWIEYGV---RAISEP- 141 (290)
T ss_pred HHHHHHHHHHHHHhcCC------CCCEEEEEEEEeCCCCCCCCCCCCCCcEEEEEEecccCchhHHhcCc---EEEECC-
Confidence 89999999999998762 123456666654332334332 234566666654321 123343 332221
Q ss_pred ccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHH
Q 019544 174 FHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKS 253 (339)
Q Consensus 174 ~~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~ 253 (339)
..+...+++||. ||+.+++++++|+++|+||+|++| +|+|+|++++|||+++||+|+|||++.|+|+||||+.
T Consensus 142 ---~~~~~~~~~Kt~-nyl~~vla~~ea~~~g~deaL~l~---~g~v~E~t~sNif~v~~~~l~TPpl~~g~L~GItR~~ 214 (290)
T PRK12400 142 ---DTRWLRCDIKSL-NLLPNILAATKAERKGCKEALFVR---NGTVTEGSHSNFFLIKNGTLYTHPANHLILNGIIRQY 214 (290)
T ss_pred ---CCCccCCCCccc-ccHHHHHHHHHHHHcCCCEEEEEc---CCEEEEcCceEEEEEECCEEEeCCCCCCcCcCHHHHH
Confidence 123334689996 999999999999999999999995 5999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcC
Q 019544 254 IIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 326 (339)
Q Consensus 254 vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~ 326 (339)
|+++|+++|++|+|+.++++||.+|||+|+|||+.||+||++|+ ++.+ .+|++||+|++|+++|.+....
T Consensus 215 llela~~~gi~v~E~~i~~~eL~~Adevfltns~~gv~PV~~i~--~~~~-~~~~~g~~t~~l~~~~~~~~~~ 284 (290)
T PRK12400 215 VLSLAKTLRIPVQEELFSVRDVYQADECFFTGTTIEILPMTHLD--GTAI-QDGQVGPITKMLQRSFSQSLLQ 284 (290)
T ss_pred HHHHHHHcCCcEEEEeCCHHHHHhCCeeeEccCcceEEEEEEEC--CEEC-CCCCcCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999994 7877 3678999999999999885543
No 17
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1e-54 Score=406.99 Aligned_cols=271 Identities=22% Similarity=0.328 Sum_probs=227.5
Q ss_pred CcccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CHH
Q 019544 22 QIGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SID 100 (339)
Q Consensus 22 ~~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~~ 100 (339)
.++|.||++++..++.++ +.|++|+||||+|||+|+| +|+ +|+|++|++||.+||+.|+|+.| +.+
T Consensus 3 ~~~~~nG~~~~~~~~~i~--------~~drg~~yGdGvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~L~i~~~~~~~ 69 (286)
T PRK06680 3 RIAYVNGRYVNHREARVH--------IEDRGFQFADGIYEVCAVR---DGK--LVDLDRHLARLFRSLGEIRIAPPMTRA 69 (286)
T ss_pred cEEEECCEEEEHHHCccc--------ccccccceeeEEEEEEEEE---CCE--EechHHHHHHHHHHHHHcCCCCCCCHH
Confidence 478999999999999995 4999999999999999998 676 57799999999999999999987 889
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCccEEEEEEEe-ecCCccccC-C--CCCeEEEEEEeeCCcc-----ccCCCcceEEEee
Q 019544 101 QFIDAVKQTALANKRWVPPPGKGSLYIRPLLV-GSGPILGLA-P--APEYTFLVFASPVGNY-----FKEGLAPLNLYVE 171 (339)
Q Consensus 101 ~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~-g~~~~~~~~-~--~~~~~~~i~~~p~~~~-----~~~g~~~~~l~~~ 171 (339)
++.+.+.+++++|+. .++ ++|+.++ |.+ ..+.. + ...+.+++++.|.+.+ +.+| +++...
T Consensus 70 ~l~~~i~~~~~~~~~-----~~~--~lr~~vtrG~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g---v~~~~~ 138 (286)
T PRK06680 70 ELVEVLRELIRRNRV-----REG--LVYLQVTRGVA-RRDHVFPAADVKPSVVVFAKSVDFARPAAAAETG---IKVITV 138 (286)
T ss_pred HHHHHHHHHHHHcCC-----Cce--EEEEEEEeCCC-CCCCCCCCCCCCcEEEEEEEeccccCChhHHhCC---eEEEEe
Confidence 999999999998863 233 4554554 443 33332 2 2456788888886542 2334 334332
Q ss_pred ccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEE-ECCEEEccCCCCCcccChH
Q 019544 172 DEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL-KGNIISTPATSGTILAGIT 250 (339)
Q Consensus 172 ~~~~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v-~~g~l~TP~l~~~iL~GIt 250 (339)
. ..| +..+++|+. ||+.+++++++|+++|+||+|++| +|+|+|++++|||++ ++|+|+|||++.++|+|||
T Consensus 139 ~-~~~---~~~~~~Ks~-nyl~~vla~~eA~~~g~dd~l~ld---~g~v~E~~~sN~f~~~~~~~l~TP~~~~~iL~Git 210 (286)
T PRK06680 139 P-DNR---WKRCDIKSV-GLLPNVLAKQAAKEAGAQEAWMVD---DGFVTEGASSNAWIVTKDGKLVTRPADNFILPGIT 210 (286)
T ss_pred c-CCC---CCCCCcchh-ccHHHHHHHHHHHHCCCCEEEEec---CCEEEEcCcEEEEEEEECCEEEeCCCCCCCCcCHH
Confidence 2 222 234689997 999999999999999999999998 489999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcCC
Q 019544 251 RKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGL 327 (339)
Q Consensus 251 R~~vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~~ 327 (339)
|+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||.+|+ ++.++ ++++||++++|+++|.+..++.
T Consensus 211 r~~il~~a~~~g~~v~e~~i~~~el~~ade~f~~ns~~gi~pV~~id--~~~~~-~~~~g~~~~~L~~~~~~~~~~~ 284 (286)
T PRK06680 211 RHTLIDLAKELGLEVEERPFTLQEAYAAREAFITAASSFVFPVVQID--GKQIG-NGKPGPIAKRLREAYEEFARLT 284 (286)
T ss_pred HHHHHHHHHHcCCeEEEEcCCHHHHhcCcEEEEecCcccEEEEEEEC--CEECC-CCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999994 77774 6678999999999998876654
No 18
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=7.9e-55 Score=415.36 Aligned_cols=276 Identities=22% Similarity=0.247 Sum_probs=230.1
Q ss_pred CcccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CHH
Q 019544 22 QIGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SID 100 (339)
Q Consensus 22 ~~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~~ 100 (339)
..+|.||+++|..++++++ .|+||+||||+|||+|++ +|+ +|+|++|++||.+||+.|+|+.| +.+
T Consensus 41 ~~~~~nG~~v~~~~a~i~~--------~Drgl~~GdGvFETirv~---~G~--~~~le~Hl~RL~~Sa~~L~i~~p~~~~ 107 (336)
T PLN02845 41 YSSVVGGITTDPAAMVIPL--------DDHMVHRGHGVFDTATIR---DGH--LYELDAHLDRFLRSAAKAKIPLPFDRA 107 (336)
T ss_pred eeEEECCEEccHHHCcccc--------cccceeecceEEEEEEEE---CCE--EcCHHHHHHHHHHHHHhhCCCCCCCHH
Confidence 4678999999999999954 999999999999999997 666 67899999999999999999987 889
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCC--CCCeEEEEEEeeCCccccCCCcceEEEeeccccccC
Q 019544 101 QFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP--APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRAT 178 (339)
Q Consensus 101 ~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~--~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~ 178 (339)
++.+.+.+++++++. ...+||+.++.+.+.+++.+ ...+.+++...|.+.... ..+++++.+. ++.|.
T Consensus 108 ~l~~~i~~~i~~~~~-------~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~gv~l~~~-~~~~~- 177 (336)
T PLN02845 108 TLRRILLQTVAASGC-------RNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQD-RPEGVKVVTS-SVPIK- 177 (336)
T ss_pred HHHHHHHHHHHhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEcccccccc-ccCCeEEEEe-eeeec-
Confidence 999999999998763 24567777764333455432 345677777766432211 1133445443 34453
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEE-CCEEEccCCCCCcccChHHHHHHHH
Q 019544 179 PGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK-GNIISTPATSGTILAGITRKSIIEI 257 (339)
Q Consensus 179 p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~-~g~l~TP~l~~~iL~GItR~~vi~~ 257 (339)
++.++++||. ||+.+++|+++|+++|+||+||+|+ +|+|+|++++|||+++ +|+|+|||++ +||+||||+.|+++
T Consensus 178 ~~~~~~~Kt~-nyl~~vla~~eA~~~G~deaLlln~--~G~V~Egt~sNiF~v~~~~~l~TP~l~-~iL~GItR~~vlel 253 (336)
T PLN02845 178 PPQFATVKSV-NYLPNALSQMEAEERGAFAGIWLDE--EGFVAEGPNMNVAFLTNDGELVLPPFD-KILSGCTARRVLEL 253 (336)
T ss_pred CCccccchhh-hhHHHHHHHHHHHHcCCCEEEEECC--CCcEEEcCcceEEEEEECCEEEeCCCC-CcCccHHHHHHHHH
Confidence 3446789996 9999999999999999999999998 8999999999999874 9999999987 59999999999999
Q ss_pred HHhC---C--CcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcCC
Q 019544 258 ASDC---G--FQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGL 327 (339)
Q Consensus 258 a~~~---G--i~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~~ 327 (339)
|+++ | ++|+|+.++++||.+|||+|+|||++||+||.+| |++.++ +|.+||+|++|++.|.+.++..
T Consensus 254 a~~~~~~G~~i~V~E~~i~~~eL~~AdEvFltnS~~gv~PV~~i--d~~~~~-~g~~gp~t~~L~~~~~~~~~~~ 325 (336)
T PLN02845 254 APRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPIVSW--DGQPIG-DGKVGPITLALHDLLLDDMRSG 325 (336)
T ss_pred HHhhhccCCceEEEEEecCHHHHhcCCEEEEecCcccEEEEEEE--CCEECC-CCCCCHHHHHHHHHHHHHHhcC
Confidence 9986 8 8999999999999999999999999999999999 488873 6789999999999998877763
No 19
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.5e-54 Score=405.40 Aligned_cols=278 Identities=36% Similarity=0.542 Sum_probs=241.6
Q ss_pred CcccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CHH
Q 019544 22 QIGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SID 100 (339)
Q Consensus 22 ~~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~~ 100 (339)
..+|.||++++..+++++ +.|++++||+++|||+|+|+ |+ +|+|++|++||.+||++|+|+.| +.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~--------~~~~~~~~g~~vFE~~r~~~---g~--~~~l~~H~~RL~~Sa~~l~~~~~~~~~ 68 (284)
T COG0115 2 GKIWVNGELVPEEDAKLS--------VLDRGLHYGDGVFETLRAYN---GK--LFRLDEHLARLKRSAKRLGLPRPESEE 68 (284)
T ss_pred CeEeECCEEccCcccccC--------cccceeccccceeEEEEEeC---Cc--ccChHHHHHHHHHHHHHhCCCCCCCHH
Confidence 357899999999999994 59999999999999999995 54 89999999999999999999998 788
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCccccCCC--cceEEEeeccccccC
Q 019544 101 QFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGL--APLNLYVEDEFHRAT 178 (339)
Q Consensus 101 ~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~g~--~~~~l~~~~~~~r~~ 178 (339)
++......++..++. ...+|+|+++++.++.+++.+..++.+.+++.|.++|+..+. +++.+.+++.+++..
T Consensus 69 ~~~~~~~~~~~~~~~------~~~~y~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 142 (284)
T COG0115 69 EIELLIQLLLAKNNL------VPGLYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKGGRLEKGVVLVISSPVRRAP 142 (284)
T ss_pred HHHHHHHHHHHhhCC------CCceEEEEEEEeecCCCCcCCCCccEEEEEEEecccccCcccccCCeEEEEeehhhccC
Confidence 888888888877663 123899999998877788777667889999999999877652 344444443444443
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEE-CCEEEccCCCCCcccChHHHHHHHH
Q 019544 179 PGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK-GNIISTPATSGTILAGITRKSIIEI 257 (339)
Q Consensus 179 p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~-~g~l~TP~l~~~iL~GItR~~vi~~ 257 (339)
++....+|+. ||+.+.+++++|+++|+||+|++|. +|+|+|++++|||+++ ||+|+||+++.++||||||+.+|++
T Consensus 143 ~~~~~~~k~~-~y~~~~~a~~~A~~~G~~eal~~~~--~G~V~Eg~~sNvf~v~~dg~~~TP~~~~~iL~GitR~~li~l 219 (284)
T COG0115 143 PGPGAAKKTG-NYLSSVLAKREAKAAGADEALLLDE--DGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLEL 219 (284)
T ss_pred CCcchhhhhc-ccHHHHHHHHHHHHCCCCEEEEecC--CCeEEEcCcceEEEEEECCEEECCCCCCCccccHHHHHHHHH
Confidence 4335568875 9999999999999999999999998 8999999999999999 8899999999999999999999999
Q ss_pred HHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcCC
Q 019544 258 ASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGL 327 (339)
Q Consensus 258 a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~~ 327 (339)
|+++|++++|++|+.+||.+|||+|+|||+++|+||..|+ ++ . +++||+|++|+++|.+++.|.
T Consensus 220 a~~~G~~v~E~~i~~~~l~~adevf~t~t~~~v~PV~~i~--~~-~---~~~gpit~~l~~~~~~~~~~~ 283 (284)
T COG0115 220 AKELGLTVEERPITLEDLKQADEVFLTNTAAGVTPVGLID--GR-V---GQPGPVTKKLRELLTDIQYGE 283 (284)
T ss_pred HHHcCceEEEeecCHHHHhhCCEEEEEccceEEEEEEEEC--Cc-c---CCCChHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999994 54 2 579999999999999999875
No 20
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=2.4e-54 Score=401.41 Aligned_cols=263 Identities=27% Similarity=0.431 Sum_probs=221.6
Q ss_pred cceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CHHHHH
Q 019544 25 FWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFI 103 (339)
Q Consensus 25 ~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~~~l~ 103 (339)
|.||++++..++.++ +.|++|+||||+|||||++ +|+ +|+|++|++||.+||+.|+|+.| +.+++.
T Consensus 1 ~~nG~~~~~~~~~i~--------~~d~g~~~G~gvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~ 67 (270)
T cd01558 1 YLNGEYVPREEAKVS--------VFDRGFLFGDGVYEVIRVY---NGK--PFALDEHLDRLYRSAKELRIDIPYTREELK 67 (270)
T ss_pred CcCCeEeEHHHCccc--------cccchhcccceEEEEEEEE---CCE--EecHHHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 568999999998885 5999999999999999997 566 68899999999999999999877 889999
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCC--CCCeEEEEEEeeCCc----cccCCCcceEEEeecccccc
Q 019544 104 DAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP--APEYTFLVFASPVGN----YFKEGLAPLNLYVEDEFHRA 177 (339)
Q Consensus 104 ~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~--~~~~~~~i~~~p~~~----~~~~g~~~~~l~~~~~~~r~ 177 (339)
+.+.++++.++. ..+.+++++ ++|.+ ..++.+ ...+.+++...|.+. ++.+| +++.+. .+.|.
T Consensus 68 ~~i~~~~~~~~~-----~~~~~~~~~-t~g~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g---v~~~~~-~~~~~ 136 (270)
T cd01558 68 ELIRELVAKNEG-----GEGDVYIQV-TRGVG-PRGHDFPKCVKPTVVIITQPLPLPPAELLEKG---VRVITV-PDIRW 136 (270)
T ss_pred HHHHHHHHHcCC-----CCceEEEEE-EeCCC-ccCCCCCCCCCCEEEEEEEecCCCChhhhhcC---eEEEEe-ccccc
Confidence 999999998763 245777775 44544 344433 234567777777653 23344 444443 33332
Q ss_pred CCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHH
Q 019544 178 TPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEI 257 (339)
Q Consensus 178 ~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~ 257 (339)
..+++|+. ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||++++|+|+|||++.++|+||||+.|+++
T Consensus 137 ---~~~~~K~~-ny~~~~~a~~~a~~~g~de~l~ld~--~g~v~E~~~sNif~~~~~~l~TP~~~~~~L~GitR~~vl~~ 210 (270)
T cd01558 137 ---LRCDIKSL-NLLNNVLAKQEAKEAGADEAILLDA--DGLVTEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIEL 210 (270)
T ss_pred ---CCCCchhh-ccHHHHHHHHHHHHcCCCEEEEEcC--CCEEEEcCcEEEEEEECCEEECCCCcCCCCCChHHHHHHHH
Confidence 34689996 9999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHH
Q 019544 258 ASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTL 320 (339)
Q Consensus 258 a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~ 320 (339)
|+++|++|+|+.|+++||.+|||+|+|||++||+||++|+ ++.+. ++++||+|++|++.|
T Consensus 211 a~~~g~~v~e~~i~~~eL~~ade~fl~ns~~gv~PV~~i~--~~~~~-~~~~~~~~~~l~~~~ 270 (270)
T cd01558 211 AKELGIPVEERPFSLEELYTADEVFLTSTTAEVMPVVEID--GRPIG-DGKPGPVTKRLREAY 270 (270)
T ss_pred HHHcCCeEEEEeCCHHHHhhCCEEEEecCcccEEEEEEEC--CeECC-CCCCCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999994 77763 567999999998865
No 21
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=1.3e-53 Score=397.83 Aligned_cols=264 Identities=22% Similarity=0.317 Sum_probs=218.1
Q ss_pred ccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CHHHH
Q 019544 24 GFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQF 102 (339)
Q Consensus 24 ~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~~~l 102 (339)
+|.||++++..++.++ +.|++|+||||||||||+| +|+ +|+|++|++||.+||+.|+|+.| +.+.+
T Consensus 2 ~~~nG~~~~~~~~~i~--------~~drgl~yGdgvFEtir~~---~g~--~~~l~~H~~RL~~Sa~~l~i~~~~~~~~l 68 (276)
T TIGR01121 2 VLWNGQLVEREEAKID--------IEDRGYQFGDGVYEVIRVY---NGK--LFTVNEHIDRLYASAAKIRIDIPYTKEEL 68 (276)
T ss_pred EEECCEEeEHHHCeec--------ccccccccccEEEEEEEEE---CCE--EeChHHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 4789999999999985 4999999999999999998 565 68899999999999999999987 79999
Q ss_pred HHHHHHHHHHcCCCCCCCCCccEEEEEEEe-ecCCccccC-CC--CCeEEEEEEeeCCc---cccCCCcceEEEeecccc
Q 019544 103 IDAVKQTALANKRWVPPPGKGSLYIRPLLV-GSGPILGLA-PA--PEYTFLVFASPVGN---YFKEGLAPLNLYVEDEFH 175 (339)
Q Consensus 103 ~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~-g~~~~~~~~-~~--~~~~~~i~~~p~~~---~~~~g~~~~~l~~~~~~~ 175 (339)
.+.+.++++.++. . ..+||+.++ |.+ ..+.. +. ..+.++++..|.+. .+.+|++ +.... ..
T Consensus 69 ~~~i~~~~~~~~~-----~--~~~irl~~~rg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~---~~~~~-~~ 136 (276)
T TIGR01121 69 HQLLHELVEKNNL-----N--TGHVYFQVTRGVA-PRNHQFPAGTVKPVITAYTKEVPRPEENLEKGVK---AITVE-DI 136 (276)
T ss_pred HHHHHHHHHhcCC-----C--ceEEEEEEEcCCC-CcCCCCCCCCCCcEEEEEEecccCChhHHhcCeE---EEEec-CC
Confidence 9999999998863 2 334555544 433 23332 22 23556666665442 1234443 32221 12
Q ss_pred ccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHH
Q 019544 176 RATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSII 255 (339)
Q Consensus 176 r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi 255 (339)
| ...+++|+. ||+.+++++++|+++|+||+||++ +|+|+|++++|||++++|+|+|||++.|+|+||||+.++
T Consensus 137 ~---~~~~~~K~~-nyl~~vla~~eA~~~g~de~l~~~---~g~v~E~~~sNif~v~~~~~~TP~~~~~~L~GitR~~vl 209 (276)
T TIGR01121 137 R---WLRCDIKSL-NLLGNVLAKQEAHEKGAYEAILHR---GGTVTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVIL 209 (276)
T ss_pred C---ccCCCcchh-hhHHHHHHHHHHHHcCCCEEEEec---CCeEEecCceeEEEEECCEEEeCCCcCCCCcCHHHHHHH
Confidence 2 234689986 999999999999999999999995 599999999999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHH
Q 019544 256 EIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVG 322 (339)
Q Consensus 256 ~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~ 322 (339)
++|+++|++|+|+.|+++||.+|||+|+|||++||+||++|+ ++.+. ++.+||+|++|+++|.+
T Consensus 210 ~~a~~~g~~v~e~~i~~~el~~ade~fltns~~gi~PV~~id--~~~~~-~~~~g~~~~~L~~~~~~ 273 (276)
T TIGR01121 210 ACAEENGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIEID--GQQIG-DGKPGPWTRQLQKAFEE 273 (276)
T ss_pred HHHHHCCCeEEEEeCCHHHHhcCCEEEEecCcccEEEEEEEC--CEECC-CCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999994 77763 66789999999999975
No 22
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=1.2e-53 Score=400.72 Aligned_cols=270 Identities=21% Similarity=0.270 Sum_probs=224.1
Q ss_pred cCccccee-----eeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCC
Q 019544 21 SQIGFWQI-----RFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 95 (339)
Q Consensus 21 ~~~~~~~g-----~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~ 95 (339)
..++|.|| ++++.+++.+++ .|+||+||||+||||+++ +|+ ++.|++|++||.+||+.|+|+
T Consensus 6 ~~~~~~ng~~~~~~~~~~~~a~i~~--------~drg~~~GdgvFEt~rv~---~g~--i~~l~~Hl~RL~~Sa~~l~i~ 72 (292)
T PRK07849 6 PVVVTLDPYGGSERVHDPSAPLLHA--------DDLAAVRGDGVFETLLVR---DGR--PCNLEAHLERLARSAALLDLP 72 (292)
T ss_pred eEEEEECCCCccceEechHHCCccc--------hhcchhccceEEEEEEEE---CCE--ECCHHHHHHHHHHHHHhcCCC
Confidence 35889999 999999999964 999999999999999997 566 567899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCccc-cCCCcceEEEeecc-
Q 019544 96 SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF-KEGLAPLNLYVEDE- 173 (339)
Q Consensus 96 ~~~~~~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~-~~g~~~~~l~~~~~- 173 (339)
.|+.+++.+++.++++++.. .....+||++++.+.+.. ..+.+++.+.|.+... ....+++++.+.+.
T Consensus 73 ~~~~~~l~~~i~~~v~~~~~-----~~~~~~iRl~v~~g~~~~-----~~~~~~i~~~p~~~~~~~~~~~gv~l~~~~~~ 142 (292)
T PRK07849 73 EPDLDRWRRAVELAIEEWRA-----PEDEAALRLVYSRGRESG-----GAPTAWVTVSPVPERVARARREGVSVITLDRG 142 (292)
T ss_pred CCCHHHHHHHHHHHHHHhcC-----CCCCeEEEEEEeCCCCCC-----CCCeEEEEEeecCccchhhccCCeEEEEEecc
Confidence 98888999999999987631 013567887766432222 2456778888765321 11112344544321
Q ss_pred ----ccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccCh
Q 019544 174 ----FHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGI 249 (339)
Q Consensus 174 ----~~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GI 249 (339)
+.+..|..++++||. ||+.++++.++|+++|+||+|++|+ +|+|+|++++|||+++||+|+||+++.|+|+||
T Consensus 143 ~~~~~~~~~p~~~~~~Kt~-ny~~~i~a~~~A~~~g~dd~L~ld~--~G~v~E~s~~Nif~~~~g~l~TP~~~~giL~GI 219 (292)
T PRK07849 143 YPSDAAERAPWLLAGAKTL-SYAVNMAALRYAARRGADDVIFTST--DGYVLEGPTSTVVIATDDRLLTPPPWYGILPGT 219 (292)
T ss_pred ccCcccccCcccccccchh-hhHHHHHHHHHHHHcCCCEEEEEcC--CCcEEECCceEEEEEECCEEECCCCcCCCCccH
Confidence 112234456789996 9999999999999999999999998 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHH
Q 019544 250 TRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVG 322 (339)
Q Consensus 250 tR~~vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~ 322 (339)
||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||.+| |++.++ +||+|++|+++|.+
T Consensus 220 tR~~vie~~~~~g~~v~er~i~~~eL~~Adevfltns~~gi~pV~~i--d~~~~~----~~~~~~~l~~~~~~ 286 (292)
T PRK07849 220 TQAALFEVAREKGWDCEYRALRPADLFAADGVWLVSSVRLAARVHTL--DGRPLP----RDPLADELTELVDA 286 (292)
T ss_pred HHHHHHHHHHHcCCceEEEECCHHHHhhCCEEEEecCcceEEEEEEE--CCEECC----CChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 477762 57999999999976
No 23
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=5.5e-53 Score=389.11 Aligned_cols=252 Identities=42% Similarity=0.624 Sum_probs=214.0
Q ss_pred ccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEE
Q 019544 50 ANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIR 128 (339)
Q Consensus 50 ~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~~~l~~~i~~l~~~~~~~~p~~~~~~~~iR 128 (339)
|++|+||||+|||||++ +|+ +|+|++|++||.+||+.|+|+.+ +.+.+.+.+.++++.++. +..+||
T Consensus 1 drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~ir 68 (256)
T cd00449 1 DRGLHYGDGVFEGLRAG---KGR--LFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANNG-------ASLYIR 68 (256)
T ss_pred CceeeccceEEEEEEEc---CcE--EEChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CCEEEE
Confidence 68999999999999995 676 67799999999999999999965 899999999999998652 467888
Q ss_pred EEEeecCCccccC--CCCCeEEEEEEeeCCccccCCCcceEEEeecccccc-CCCCCCCcccccChHHHHHHHHHHHHCC
Q 019544 129 PLLVGSGPILGLA--PAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRA-TPGGAGGVKAISNYAPVLKAISRAKNRG 205 (339)
Q Consensus 129 ~~~~g~~~~~~~~--~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~-~p~~~~~~Kt~~ny~~~~~a~~eA~~~g 205 (339)
+.++++.+..+.. +...+.+++++.|.+++.....+++++.+.. +.|. .++.++++|+. ||+.+++++++|+++|
T Consensus 69 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~Kt~-~~~~~~~a~~~a~~~g 146 (256)
T cd00449 69 PLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSP-DRRRAAPGGTGDAKTG-GNLNSVLAKQEAAEAG 146 (256)
T ss_pred EEEEecccccCCCCCCCCCcEEEEEEeeccccccccCCCeEEEEee-eEEeCCCCCCccchhh-CCHHHHHHHHHHHHcC
Confidence 8887555455654 2356788888887765311112345565543 4443 45568899997 8999999999999999
Q ss_pred CCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEec
Q 019544 206 FSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTG 285 (339)
Q Consensus 206 ~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a~~~Gi~v~e~~i~~~eL~~adevfltn 285 (339)
+||+||+|+ +|+|+|++++|||++++|+|+|||++.|+|+||||+.++++|+++|++|+|+.++++||.+|||+|+||
T Consensus 147 ~de~llld~--~g~v~E~s~sNlf~~~~~~l~TP~~~~g~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~n 224 (256)
T cd00449 147 ADEALLLDD--NGYVTEGSASNVFIVKDGELVTPPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTG 224 (256)
T ss_pred CCEEEEECC--CCcEEEcCceEEEEEECCEEEeCCCCCCcCcchhHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEcc
Confidence 999999998 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHH
Q 019544 286 TAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTL 320 (339)
Q Consensus 286 t~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~ 320 (339)
|++||+||.+|+ ++.++ .+.+||++++|+++|
T Consensus 225 s~~gv~pV~~i~--~~~~~-~~~~~~~~~~l~~~~ 256 (256)
T cd00449 225 TAAEVTPVTEID--GRGIG-DGKPGPVTRKLRELL 256 (256)
T ss_pred ccceEEEEEEEC--CeecC-CCCCCHHHHHHHHhC
Confidence 999999999994 77763 567999999999875
No 24
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=6.4e-53 Score=391.55 Aligned_cols=263 Identities=23% Similarity=0.257 Sum_probs=213.2
Q ss_pred ccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCHHHHH
Q 019544 24 GFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFI 103 (339)
Q Consensus 24 ~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l~ 103 (339)
+|.||++ +++++ +.|++|+||||+|||+|++ +|+ +|+|++|++||.+||+.|+|+.|+.+.+.
T Consensus 2 ~~~nG~~----~~~i~--------~~d~g~~~GdgvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~ 64 (268)
T PRK06092 2 FWINGQP----QESLS--------VSDRSTQYGDGCFTTARVR---DGQ--VSLLSRHLQRLQDACERLAIPLDDWAQLE 64 (268)
T ss_pred EEECCcC----cCccC--------ccccccccccceeeEEEEE---CCe--eccHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 4678885 44553 4899999999999999997 666 67789999999999999999988777888
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCC--CCeEEEEEEeeCCccccCC-CcceEEEeeccccccCCC
Q 019544 104 DAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPG 180 (339)
Q Consensus 104 ~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~--~~~~~~i~~~p~~~~~~~g-~~~~~l~~~~~~~r~~p~ 180 (339)
+.+.+++... ...++|+.++.+.+..++.+. ..+.++++..|.+++.... .+++++.++ +..+..++
T Consensus 65 ~~l~~~~~~~---------~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~l~~~-~~~~~~~~ 134 (268)
T PRK06092 65 QEMKQLAAEL---------ENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALC-PTRLGRNP 134 (268)
T ss_pred HHHHHHHhhC---------CCeEEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccChhHhhCCEEEEEe-ccccCCCC
Confidence 8887776321 234566666543334454433 4557788888776433210 134455444 34444444
Q ss_pred CCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHHHh
Q 019544 181 GAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASD 260 (339)
Q Consensus 181 ~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a~~ 260 (339)
.++++||. ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+|||++.++|+||||+.++++|++
T Consensus 135 ~~~~~Kt~-ny~~~~~a~~~A~~~g~de~l~l~~--~g~v~E~s~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~~~~ 211 (268)
T PRK06092 135 LLAGIKHL-NRLEQVLIRAELEQTEADEALVLDS--EGWVIECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQ 211 (268)
T ss_pred CccCcchh-hhHHHHHHHHHHHhcCCCEEEEECC--CCCEEEccceEEEEEECCEEECCCccccCcccHHHHHHHHHHHH
Confidence 57889996 9999999999999999999999998 89999999999999999999999998899999999999999999
Q ss_pred CCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHH
Q 019544 261 CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVG 322 (339)
Q Consensus 261 ~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~ 322 (339)
+|++|+|+.|+++||.+|||+|+|||++||+||.+|+ ++.+ .+||+|++|+++|..
T Consensus 212 ~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id--~~~~----~~g~~~~~l~~~~~~ 267 (268)
T PRK06092 212 SGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIG--ETSY----SSGTLTRYLQPLCER 267 (268)
T ss_pred cCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEEC--CEEc----cchHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999994 7775 268999999998864
No 25
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=7.9e-53 Score=386.91 Aligned_cols=246 Identities=30% Similarity=0.436 Sum_probs=210.5
Q ss_pred ccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEE
Q 019544 50 ANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRP 129 (339)
Q Consensus 50 ~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~l~~~~~~~~p~~~~~~~~iR~ 129 (339)
|++|+||||+|||+++| +|+ +|+|++|++||.+||++|+|+.++.+++.+.+.++++.++. +..+||+
T Consensus 1 Drg~~~GdgvFEt~~~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~ 68 (249)
T cd01559 1 DRGFAYGDGVFETMRAL---DGR--LFLLDAHLARLERSARRLGIPEPDLPRLRAALESLLAANDI-------DEGRIRL 68 (249)
T ss_pred CCcccccceeEEEEEEE---CCE--EccHHHHHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHhCCC-------CceEEEE
Confidence 68999999999999998 566 67899999999999999999943899999999999998763 3568888
Q ss_pred EEeecCCccccC--CCCCeEEEEEEeeCCc-cccCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCC
Q 019544 130 LLVGSGPILGLA--PAPEYTFLVFASPVGN-YFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGF 206 (339)
Q Consensus 130 ~~~g~~~~~~~~--~~~~~~~~i~~~p~~~-~~~~g~~~~~l~~~~~~~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~ 206 (339)
+++.+.+..++. +..++.++++..|.+. .+.+ ++++.+. ++.|..++.++++|+. ||+.+++++++|+++|+
T Consensus 69 ~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---gv~l~~~-~~~~~~~~~~~~~Kt~-ny~~~~~a~~~a~~~g~ 143 (249)
T cd01559 69 ILSRGPGGRGYAPSVCPGPALYVSVIPLPPAWRQD---GVRLITC-PVRLGEQPLLAGLKHL-NYLENVLAKREARDRGA 143 (249)
T ss_pred EEecCCCCCCCCCCCCCCCEEEEEeccCCHHHHhC---CcEEEEc-ccccCCCCCCCCcchh-hhHHHHHHHHHHHhcCC
Confidence 877433334443 3345678888887653 2223 4455444 4666667788999996 99999999999999999
Q ss_pred CeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecC
Q 019544 207 SDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGT 286 (339)
Q Consensus 207 de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt 286 (339)
||+||+|+ +|+|+|++++|||++++|+|+|||++.|+||||||+.++++|+++|++|+|+.|+++||.+|||+|+|||
T Consensus 144 de~l~l~~--~g~v~E~~~~Nif~~~~~~~~TP~~~~g~L~Gitr~~~l~~~~~~g~~v~e~~i~~~el~~ade~~~~ns 221 (249)
T cd01559 144 DEALFLDT--DGRVIEGTASNLFFVKDGELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNS 221 (249)
T ss_pred CEEEEEcC--CCCEEEecceEEEEEECCEEECCCcccCccccHHHHHHHHHHHHcCceEEEEecCHHHHhhCCEEEEecC
Confidence 99999998 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHH
Q 019544 287 AVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTL 320 (339)
Q Consensus 287 ~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~ 320 (339)
++||+||.+|+ +. .+++||++++|+++|
T Consensus 222 ~~gi~pV~~id--~~----~~~~~~~~~~l~~~~ 249 (249)
T cd01559 222 LLGVAPVTAID--DH----DGPPGPLTRALRELL 249 (249)
T ss_pred ccceeEEEEEC--Cc----ccCccHHHHHHHHhC
Confidence 99999999995 42 447899999999876
No 26
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=1.1e-52 Score=388.42 Aligned_cols=257 Identities=24% Similarity=0.306 Sum_probs=210.8
Q ss_pred cceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCHHHHHH
Q 019544 25 FWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 104 (339)
Q Consensus 25 ~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~ 104 (339)
|.||++ ++++ ++.|++|+||||||||+|++ +|+ +|+|++|++||.+||+.|+|+.|+.+++.+
T Consensus 1 ~~nG~~----~~~i--------~~~d~g~~~G~gvFEt~r~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~ 63 (261)
T TIGR03461 1 WVNGVL----QTQI--------SVSDRGLQYGDGCFTTAKVR---NGK--IELLDLHLERLQDAAARLGIPLPDWDALRE 63 (261)
T ss_pred CcCCcc----cCcc--------CcccccccccceeEEEEEEE---CCE--eccHHHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 457774 5555 45899999999999999997 666 678999999999999999999888899999
Q ss_pred HHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCC--CCCeEEEEEEeeCCccccCC-CcceEEEeeccccccCCCC
Q 019544 105 AVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP--APEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGG 181 (339)
Q Consensus 105 ~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~--~~~~~~~i~~~p~~~~~~~g-~~~~~l~~~~~~~r~~p~~ 181 (339)
.+.++++.+. ..++|+.++.+.+..++.+ ...+.++++..|.+.++... .+++++.++ ++++..++.
T Consensus 64 ~~~~~~~~~~---------~~~ir~~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~ 133 (261)
T TIGR03461 64 EMAQLAAGYS---------LGVLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYSAWQQQGIRLGVS-PVRLGRNPL 133 (261)
T ss_pred HHHHHHHhCC---------CeEEEEEEecCCCCCCCCCCCCCCCcEEEEeccCcccChhHhcCCEEEEEe-ccccCCCCC
Confidence 9999988653 3466766653322334332 24456777777766433211 134455444 344444456
Q ss_pred CCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHHHhC
Q 019544 182 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDC 261 (339)
Q Consensus 182 ~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a~~~ 261 (339)
++++||. ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+||+++.++|+||||+.++++|++.
T Consensus 134 ~~~~Kt~-~y~~~~~a~~~A~~~g~de~llln~--~g~v~E~s~sNif~~~~~~l~TP~~~~~~L~GItR~~il~~~~~~ 210 (261)
T TIGR03461 134 LAGIKHL-NRLEQVLIKAELENSEADEALVLDT--DGNVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPAL 210 (261)
T ss_pred CcCcccc-ccHHHHHHHHHhhhcCCCEEEEECC--CCCEEEeccEEEEEEECCEEECCCccccCcccHHHHHHHHHHHHc
Confidence 7899996 9999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHH
Q 019544 262 GFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELY 317 (339)
Q Consensus 262 Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~ 317 (339)
|++|+|+.|+++||.+|||+|+|||++||+||++|+ ++.+. +||+|++|+
T Consensus 211 g~~v~E~~i~~~eL~~ade~f~~ns~~gi~pV~~id--~~~~~----~~~~~~~l~ 260 (261)
T TIGR03461 211 GYEIEEVKAGLEELLSADEVFITNSLMGVVPVNAIG--ETSYP----SRTLTRLLQ 260 (261)
T ss_pred CCeEEEEecCHHHHhhCCEEEEeCCccceEEEEEEC--CEEec----chHHHHHhh
Confidence 999999999999999999999999999999999994 77762 589999885
No 27
>PRK09266 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-51 Score=379.61 Aligned_cols=257 Identities=17% Similarity=0.170 Sum_probs=212.9
Q ss_pred CcccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCHHH
Q 019544 22 QIGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQ 101 (339)
Q Consensus 22 ~~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~ 101 (339)
.++|+||+++|..+++ .+|+||||+|||+|++ +|+ +|+|++|++||.+||+++++..++.++
T Consensus 3 ~~~~~nG~~~~~~~a~-------------~~~~~GdgvFETir~~---~g~--~~~l~~Hl~RL~~sa~~l~~~~~~~~~ 64 (266)
T PRK09266 3 PLIELNGRPATAEDLA-------------ALALANYGHFTSMQVR---DGR--VRGLDLHLQRLRRASRELFGAALDDDR 64 (266)
T ss_pred cEEEECCEECCHHHhh-------------hHhhccceEEEEEEEE---CCE--EcCHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 5789999999998854 3889999999999997 666 677999999999999998664347899
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCC-CCeEEEEEEeeCCccccCCCcceEEEeeccccccCCC
Q 019544 102 FIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA-PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPG 180 (339)
Q Consensus 102 l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~-~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~ 180 (339)
+.+.+.++++. + .+..+||+.++++.+.++..+. ..+++++++.|.++....| +++.+. ++.|.
T Consensus 65 l~~~l~~~~~~-~-------~~~~~ir~~v~r~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~---v~l~~~-~~~r~--- 129 (266)
T PRK09266 65 VRAQLRAALAA-G-------PADASVRVTVFAPDFDFRNPLADVAPDVLVATSPPADGPAGP---LRLQSV-PYERE--- 129 (266)
T ss_pred HHHHHHHHHhc-C-------CCcEEEEEEEEecCcccCCCCCCCCceEEEEEecCCcCCCCC---eEEEEE-Eeccc---
Confidence 99999999843 2 1357899887754444554332 3567777777755433334 444443 34453
Q ss_pred CCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHHHh
Q 019544 181 GAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASD 260 (339)
Q Consensus 181 ~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a~~ 260 (339)
.+++|+. ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||++++|+|+||+ .++||||||+.++++|++
T Consensus 130 -~~~~K~~-~~l~~vla~~~a~~~g~de~l~ln~--~g~v~E~~~sNlf~v~~~~l~TP~--~~~L~GItR~~ll~~~~~ 203 (266)
T PRK09266 130 -LPHIKHV-GTFGQLHLRRLAQRAGFDDALFVDP--DGRVSEGATWNLGFWDGGAVVWPQ--APALPGVTMALLQRGLER 203 (266)
T ss_pred -CCCCCCC-CcHHHHHHHHHHHHcCCCeEEEEcC--CCcEEEcCceEEEEEECCEEECCC--CCccchHHHHHHHHHHHH
Confidence 4579996 8999999999999999999999998 799999999999999999999999 479999999999999999
Q ss_pred CCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHH
Q 019544 261 CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVG 322 (339)
Q Consensus 261 ~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~ 322 (339)
+|++|+|+.++++||.+|||+|+|||++||+||.+| |++.+. + .||+|++|+++|.+
T Consensus 204 ~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i--~~~~~~-~--~~~~~~~l~~~~~~ 260 (266)
T PRK09266 204 LGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAI--DDVALP-D--SHALLELLRRAYEA 260 (266)
T ss_pred cCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEE--CCEECC-C--CchHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 477762 2 38999999999965
No 28
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=100.00 E-value=1.6e-42 Score=314.27 Aligned_cols=224 Identities=30% Similarity=0.420 Sum_probs=171.9
Q ss_pred cChhhHHHHHHHhHhcCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCCCCeEEEEEEee
Q 019544 76 FRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 154 (339)
Q Consensus 76 f~l~~Hl~RL~~Sa~~l~~~~~-~~~~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p 154 (339)
|+|++|++||.+||+.+ +..+ +.+++.+.+.++++.++. .+..+||++++++++..+..+............
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~------~~~~~ir~~v~~g~~~~~~~~~~~~~~~~~~~~ 73 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IGLPFSREELREIIQELLEANPD------QGEGYIRITVTRGGGPLGGSPPENSAPPPFSIA 73 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTS------SSSEEEEEEEEETSSSSSSSECSEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCC------CCCcEEEEEEEcCCCCcCccCcccccccccccc
Confidence 56899999999999999 5544 789999999999998762 245599998887655555543322211111111
Q ss_pred CCccccCCCcceEEEeeccccccC-----CCCCCCcccccChHHHHH-HHHHHHHCCCCeEEEEccCCCCeEEecCceeE
Q 019544 155 VGNYFKEGLAPLNLYVEDEFHRAT-----PGGAGGVKAISNYAPVLK-AISRAKNRGFSDVLYLDSVNKKNLEEVSSCNI 228 (339)
Q Consensus 155 ~~~~~~~g~~~~~l~~~~~~~r~~-----p~~~~~~Kt~~ny~~~~~-a~~eA~~~g~de~Llld~~~~g~v~E~s~sNi 228 (339)
....... .........+.. ++.++++|+. ||+.+.+ +..+|+++|+||+|++|+ +|+|+|++++||
T Consensus 74 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Kt~-~~~~~~~~~~~~a~~~g~de~ll~d~--~G~v~E~~~sNi 145 (231)
T PF01063_consen 74 PPRRPPP-----PLVGSVGVRRASPPLPRPNPLPRHKTT-NRLANVLAALRAAREKGADEALLLDE--DGNVTEGSTSNI 145 (231)
T ss_dssp TCHHHHE-----EEEEECSEECETTTSE-TTTSTTS-BS-HHHHHHHHHHHHHHHTTSSEEEEEET--TSBEEEESSSEE
T ss_pred ccccCCc-----ceeeeeeEEeccccccccCCCCCeeEC-CcchhhHHHHHHHHhcCcchhheecC--CCCcCCCCCccc
Confidence 1111000 010111111221 2247899996 8888888 666677899999999998 899999999999
Q ss_pred EEEECCEEEccCCCCCcccChHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCC
Q 019544 229 FILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG 308 (339)
Q Consensus 229 f~v~~g~l~TP~l~~~iL~GItR~~vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~ 308 (339)
|+++||+|+|||++.|+|+||||+.++++++++|++|+|+.++++||.+|||+|+|||++||+||.+| |++.+ .
T Consensus 146 f~~~~~~~~TP~~~~giL~Gitr~~ll~~~~~~g~~v~e~~i~~~~L~~ade~fl~ns~~gi~pV~~i--~~~~~--~-- 219 (231)
T PF01063_consen 146 FFVKDGTLYTPPLDSGILPGITRQLLLELAKELGIPVEERPITLDDLQQADEVFLTNSLRGIRPVKSI--DGRSF--G-- 219 (231)
T ss_dssp EEEETTEEEEESGSSSSB--HHHHHHHHHHHHTTSEEEEE-BBHHHHHTHSEEEEEETTTEEEEEEEE--TTEES--T--
T ss_pred ccccCCEEEcCChhhhhccHHHHHHHHHHHHhCCCCcEEEEeCHHHhhhhhheEEecchhhEEEEEEE--CCEEC--C--
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 58775 2
Q ss_pred chHHHHHHHHHH
Q 019544 309 AQSVSRELYSTL 320 (339)
Q Consensus 309 ~gp~t~~L~~~~ 320 (339)
+||+|++|+++|
T Consensus 220 ~~p~~~~L~~~~ 231 (231)
T PF01063_consen 220 PGPITRRLQEAY 231 (231)
T ss_dssp THHHHHHHHHHH
T ss_pred CCHHHHHHHHhC
Confidence 899999999987
No 29
>PRK07546 hypothetical protein; Provisional
Probab=100.00 E-value=9.5e-41 Score=299.02 Aligned_cols=205 Identities=18% Similarity=0.219 Sum_probs=167.8
Q ss_pred cceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCC
Q 019544 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGP 136 (339)
Q Consensus 57 ~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~ 136 (339)
.++|||++++ .+|+ +++|++|++||.+||+.|+++.+ .+.+.+.+.++++++. +.+++|+.+..++
T Consensus 4 ~~lfETi~~~--~~G~--~~~l~~Hl~RL~~sa~~l~~~~~-~~~l~~~l~~~~~~~~--------~~~~vrl~~~~~g- 69 (209)
T PRK07546 4 FELIETLRWE--PGAG--FPRLDRHLARLERSARALGFPCD-PAAVRAKLAEAVAGAQ--------GPLRLRLTLARDG- 69 (209)
T ss_pred ccEEEEEEEe--CCCC--cccHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhhccC--------CCeEEEEEEcCCC-
Confidence 4799999985 1566 67799999999999999999985 6788888888887532 4578887665322
Q ss_pred ccccCCCCCeEEEEEEeeCCccccCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCC
Q 019544 137 ILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVN 216 (339)
Q Consensus 137 ~~~~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~ 216 (339)
.+++...|+++.... .++++.+. ...+..++.+.++||. ||+.+++++++|+++|+||+||+|+
T Consensus 70 ----------~~~i~~~p~~~~~~~--~~~~l~~~-~~~~~~~~~~~~~Kt~-nr~~~v~a~~~a~~~g~de~l~l~~-- 133 (209)
T PRK07546 70 ----------RLTVETAPLPPLPPD--TVWRVAIA-RTRLDSADPLLRYKTT-RRAAYDAARAELPPAEADEVILLNE-- 133 (209)
T ss_pred ----------CEEEEEecCCCCCCC--CcEEEEEc-CcccCCCCcchhcccC-ChHHHHHHHHHHhhCCCCEEEEECC--
Confidence 245666766532211 12334333 3445555567899996 9999999999999999999999998
Q ss_pred CCeEEecCceeEEEEECCEEE-ccCCCCCcccChHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEE
Q 019544 217 KKNLEEVSSCNIFILKGNIIS-TPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGS 295 (339)
Q Consensus 217 ~g~v~E~s~sNif~v~~g~l~-TP~l~~~iL~GItR~~vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~ 295 (339)
+|+|+|++++|||++++|+|+ |||++.|+|+||||+.+++. .+++|+.++++||.+|||+|+|||++||+||..
T Consensus 134 ~G~v~E~s~~Ni~~~~~~~~~~TP~~~~g~L~Gi~R~~ll~~-----~~v~e~~i~~~~L~~adevfl~NSl~gv~pV~~ 208 (209)
T PRK07546 134 RGEVCEGTITNVFLDRGGGMLTTPPLSCGLLPGVLRAELLDA-----GRAREAVLTVDDLKSARAIWVGNSLRGLIRAEL 208 (209)
T ss_pred CCcEEEcCceeEEEEECCEEEECCCCcCCCCccHHHHHHHhh-----CCeEEEEcCHHHHhhCCEEEEEccceeEEEEEE
Confidence 899999999999999999999 99999999999999999985 579999999999999999999999999999986
Q ss_pred E
Q 019544 296 I 296 (339)
Q Consensus 296 I 296 (339)
|
T Consensus 209 ~ 209 (209)
T PRK07546 209 I 209 (209)
T ss_pred C
Confidence 4
No 30
>PRK07101 hypothetical protein; Provisional
Probab=100.00 E-value=7.3e-32 Score=237.17 Aligned_cols=183 Identities=16% Similarity=0.191 Sum_probs=137.9
Q ss_pred cceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCC-C-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeec
Q 019544 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPS-P-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 134 (339)
Q Consensus 57 ~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~-~-~~~~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~ 134 (339)
.++||||+++ +|+ ++++++|++||.+||+.+++.. | +.+++.+.+.++. .+.+++|++. +.
T Consensus 3 ~~l~ETir~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~r~rl~~-~~ 65 (187)
T PRK07101 3 FPLFETIAIE---DGE--IQNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTELQ-----------EGLVRCRIDY-NA 65 (187)
T ss_pred CcceEEEeee---CCe--eccHHHHHHHHHHHHHHHcccCCcccHHHHhhchhhhc-----------CCCEEEEEEe-cC
Confidence 3699999986 666 6779999999999999998855 5 6777777775541 2457888655 44
Q ss_pred CCccccCCCCCeEEEEEEeeCCccccCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEcc
Q 019544 135 GPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS 214 (339)
Q Consensus 135 ~~~~~~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~ 214 (339)
+ .+ -+...|.++... +++++... ++...++||. ++. .+....|+..|+||+|++|
T Consensus 66 g-~~----------~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~Kt~-~r~--~~~~~~a~~~g~de~l~~~- 120 (187)
T PRK07101 66 E-IY----------QVQYFPYQRRPI---RSFQPVYC-------DDIDYSLKYT-DRS--ALNELFAQKGECDEIIIIK- 120 (187)
T ss_pred C-cE----------EEEEEcCCCCCc---CceEEEec-------CCcccccccC-CHH--HHHHHHHHhCCCCEEEEEc-
Confidence 3 12 233344332212 23334221 2224589996 542 3445556678999999997
Q ss_pred CCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCccce
Q 019544 215 VNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVV 290 (339)
Q Consensus 215 ~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i 290 (339)
+|+|+|++++|||++++|+|+||| .++|+||||+.+++. | +|+|+.|+++||.+|||+|+|||++|+
T Consensus 121 --~G~v~E~~~sNi~~~~~~~~~TP~--~~~L~Gi~R~~ll~~----~-~v~e~~i~~~~L~~ad~~~~~nsl~G~ 187 (187)
T PRK07101 121 --NGLVTDTSIGNLAFFDGKQWFTPK--KPLLKGTQRARLLDE----G-KIKEKDITVEDLLQYEEIRLINAMNGF 187 (187)
T ss_pred --CCEEEEccceEEEEEECCEEEcCC--CCCccHHHHHHHHcc----C-CEEEEecCHHHHhcCCEEEEEecccCC
Confidence 599999999999999999999999 589999999999984 5 799999999999999999999999874
No 31
>PF15507 DUF4649: Domain of unknown function (DUF4649)
Probab=71.06 E-value=5.4 Score=29.27 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=37.8
Q ss_pred EEEecChhhHhcccE-EEEe-cCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHH
Q 019544 266 EERAIPVDELLEADE-VFCT-GTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYST 319 (339)
Q Consensus 266 ~e~~i~~~eL~~ade-vflt-nt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~ 319 (339)
+||.++.++..+..- ...| .|...-.||.++.++|+.+.+.|..|.+.+.|.+.
T Consensus 11 ~Er~~~fe~~~ef~~s~~~C~vtipD~~~V~svt~~G~~ldy~G~~GdLY~~L~k~ 66 (72)
T PF15507_consen 11 QERTQTFEDYNEFMRSQSGCIVTIPDYYPVTSVTYNGQDLDYQGTYGDLYFFLMKQ 66 (72)
T ss_pred eEEEEEeCCHHHHHHHhccCcccCCCceEEEEEEECCEEeccccchhHHHHHHHHh
Confidence 355555444433211 1223 56778899999999999998889999998888764
No 32
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=55.11 E-value=58 Score=25.07 Aligned_cols=36 Identities=19% Similarity=0.429 Sum_probs=28.7
Q ss_pred HHHHHHHhCCCcEE---------EEecChhhHhcccEEEEecCcc
Q 019544 253 SIIEIASDCGFQVE---------ERAIPVDELLEADEVFCTGTAV 288 (339)
Q Consensus 253 ~vi~~a~~~Gi~v~---------e~~i~~~eL~~adevfltnt~~ 288 (339)
.+-+.|+++|+++. +..++.+++..||-+++++...
T Consensus 20 ~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 20 ALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVP 64 (96)
T ss_pred HHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCC
Confidence 34457888999887 5567889999999999998764
No 33
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=47.76 E-value=38 Score=25.60 Aligned_cols=32 Identities=22% Similarity=0.437 Sum_probs=26.8
Q ss_pred HHHHhCCCcEE---------EEecChhhHhcccEEEEecCc
Q 019544 256 EIASDCGFQVE---------ERAIPVDELLEADEVFCTGTA 287 (339)
Q Consensus 256 ~~a~~~Gi~v~---------e~~i~~~eL~~adevfltnt~ 287 (339)
+.|+++|+.+. +..++.+++..||-+++.+..
T Consensus 22 ~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 22 KAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADR 62 (85)
T ss_pred HHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccC
Confidence 45678998887 556888999999999999876
No 34
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=46.84 E-value=67 Score=24.13 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=46.0
Q ss_pred HHHHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCC-chHHHHHHHHHH
Q 019544 253 SIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTL 320 (339)
Q Consensus 253 ~vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~-~gp~t~~L~~~~ 320 (339)
-|-+.+++.|++|..-. ..+++..+|.+.+||--..++-+.....+.-.|.-.|. +..+.+.|.+.+
T Consensus 12 ~v~~~L~~~GyeVv~l~-~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLE-NEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASGLTAEEIVQEVEERL 79 (80)
T ss_pred HHHHHHHHCCCEEEecC-CccccCCcCEEEEECCCcccccccccccCceEEecCCCCHHHHHHHHHHhh
Confidence 45677888999887533 33458899999999988888877655444444432343 777777777654
No 35
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=44.76 E-value=38 Score=25.74 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCcEE---------EEecChhhHhcccEEEEecCc
Q 019544 252 KSIIEIASDCGFQVE---------ERAIPVDELLEADEVFCTGTA 287 (339)
Q Consensus 252 ~~vi~~a~~~Gi~v~---------e~~i~~~eL~~adevfltnt~ 287 (339)
+.+-+.|+++|+.+. +..++.+++..||-+++.+..
T Consensus 4 eaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 4 EALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDI 48 (88)
T ss_pred HHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 445567888998777 446888999999999999876
No 36
>COG1935 Uncharacterized conserved protein [Function unknown]
Probab=39.02 E-value=35 Score=27.43 Aligned_cols=44 Identities=34% Similarity=0.464 Sum_probs=30.2
Q ss_pred cccChHHHHHHHHHHhCCCcE-EEEe----cChhhHhcccEEEEecCccc
Q 019544 245 ILAGITRKSIIEIASDCGFQV-EERA----IPVDELLEADEVFCTGTAVV 289 (339)
Q Consensus 245 iL~GItR~~vi~~a~~~Gi~v-~e~~----i~~~eL~~adevfltnt~~~ 289 (339)
.|-||+|+.+-++.+. ++.- +-|. .+..-|...|-+|+|++...
T Consensus 5 ~LtGIs~~vie~l~~~-~~rTieiRsa~N~~tv~rl~~GDlVFlT~~~~~ 53 (122)
T COG1935 5 ALTGISRRVIESLLRN-PIRTIEIRSARNLLTVLRLHEGDLVFLTSTSLE 53 (122)
T ss_pred EEechhHHHHHHHHhC-CceEEEEEcccchHHhhcCCCCCEEEEehhHhh
Confidence 5889999988887654 4433 3232 45556677799999987643
No 37
>PRK03094 hypothetical protein; Provisional
Probab=35.14 E-value=1.5e+02 Score=22.28 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=45.2
Q ss_pred HHHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCC-chHHHHHHHHHH
Q 019544 254 IIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTL 320 (339)
Q Consensus 254 vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~-~gp~t~~L~~~~ 320 (339)
|-+.+++.|+.|..=. +..++..+|.+.+||--..++.+....++.-.|.-.|. +.++.+.|.+.+
T Consensus 13 i~~~L~~~GYeVv~l~-~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~A~G~TaeEI~~~ve~r~ 79 (80)
T PRK03094 13 VQQALKQKGYEVVQLR-SEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQVESRL 79 (80)
T ss_pred HHHHHHHCCCEEEecC-cccccCCcCEEEEeCCCcceecccccccCCcEEEcCCCCHHHHHHHHHHhh
Confidence 5677888999876322 23457889999999999999988766544444432343 677777776543
No 38
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=35.04 E-value=42 Score=23.40 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=30.8
Q ss_pred ceeEEEEECCEEEccCCCCCcccChHHHHHHHHHHhCC
Q 019544 225 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCG 262 (339)
Q Consensus 225 ~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a~~~G 262 (339)
-++++++.+++.+--.+.+=.|-|+--...-++|++.|
T Consensus 31 ~~~f~ivi~~q~i~velkdivlvgvdvgqfh~wceqng 68 (68)
T PF13051_consen 31 ESHFAIVIGEQSIDVELKDIVLVGVDVGQFHEWCEQNG 68 (68)
T ss_pred CCcEEEEECCeEEEEEeeeEEEEEecHHHHHHHHhhCC
Confidence 45777888888888788788899999888888888765
No 39
>PF04322 DUF473: Protein of unknown function (DUF473); InterPro: IPR007417 This is a family of uncharacterised archaeal proteins.
Probab=34.33 E-value=43 Score=27.17 Aligned_cols=45 Identities=31% Similarity=0.434 Sum_probs=31.6
Q ss_pred cccChHHHHHHHHHHhCCCcEEEEe----cChhhHhcccEEEEecCccc
Q 019544 245 ILAGITRKSIIEIASDCGFQVEERA----IPVDELLEADEVFCTGTAVV 289 (339)
Q Consensus 245 iL~GItR~~vi~~a~~~Gi~v~e~~----i~~~eL~~adevfltnt~~~ 289 (339)
.|-||+|+.+-++.+..=-.++-|. +....+...|-+|+|++...
T Consensus 5 aLTGIs~~vi~eL~~~~~RTiEirSa~N~~~~~~~~~Gd~VFlT~~~~~ 53 (119)
T PF04322_consen 5 ALTGISRRVIDELKKNHIRTIEIRSAHNVIALESLDPGDRVFLTSVSLE 53 (119)
T ss_pred EEeccCHHHHHHHHhCCceEEEEEcchheeeeecCCCCCEEEEecCCHH
Confidence 5889999999888664312233332 56677777899999987654
No 40
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=32.37 E-value=31 Score=26.47 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=27.0
Q ss_pred cChHHHHHHHHHHhCCCcEEEEecChhhHhcc
Q 019544 247 AGITRKSIIEIASDCGFQVEERAIPVDELLEA 278 (339)
Q Consensus 247 ~GItR~~vi~~a~~~Gi~v~e~~i~~~eL~~a 278 (339)
.|=.-+.|++.|++.|++++|.+.-.+.|..-
T Consensus 30 ~G~iAe~II~~Ake~~Vpi~edp~Lv~~L~~l 61 (92)
T COG2257 30 KGEIAEKIIEKAKEHGVPIQEDPLLVELLLKL 61 (92)
T ss_pred chHHHHHHHHHHHHcCCCcccCHHHHHHHHhc
Confidence 46678899999999999999999877777553
No 41
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=31.71 E-value=86 Score=25.11 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=26.3
Q ss_pred HHHHhCCCcEE---------EEecChhhHhcccEEEEecCc
Q 019544 256 EIASDCGFQVE---------ERAIPVDELLEADEVFCTGTA 287 (339)
Q Consensus 256 ~~a~~~Gi~v~---------e~~i~~~eL~~adevfltnt~ 287 (339)
+.|+++|+.+. +..++.+++..||-+++.+..
T Consensus 27 kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~ 67 (114)
T PRK10427 27 KLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDI 67 (114)
T ss_pred HHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 45677998877 446888999999999999876
No 42
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=30.92 E-value=1.1e+02 Score=24.97 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCcEE---------EEecChhhHhcccEEEEecC
Q 019544 252 KSIIEIASDCGFQVE---------ERAIPVDELLEADEVFCTGT 286 (339)
Q Consensus 252 ~~vi~~a~~~Gi~v~---------e~~i~~~eL~~adevfltnt 286 (339)
+.+-..|+++|+.|. |-.|+.+|+..||-|++..-
T Consensus 22 eaLe~~A~~~g~~IKVETqGs~G~eN~LT~edI~~Ad~VI~AaD 65 (122)
T COG1445 22 EALEKAAKKLGVEIKVETQGAVGIENRLTAEDIAAADVVILAAD 65 (122)
T ss_pred HHHHHHHHHcCCeEEEEcCCcccccCcCCHHHHHhCCEEEEEec
Confidence 344456788998775 34699999999999998764
No 43
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=22.80 E-value=2.9e+02 Score=20.20 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=35.3
Q ss_pred EEEccCCCCC-cccChHHHHHH-HHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEe
Q 019544 235 IISTPATSGT-ILAGITRKSII-EIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIE 304 (339)
Q Consensus 235 ~l~TP~l~~~-iL~GItR~~vi-~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~ 304 (339)
++|+|+.++- ++++-++..-+ -+++.+|++.+-..+.. .+ + .+..|-+|+-.+ ||+.|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~kv~~~L~elglpye~~~~~~-----~~--~--~~P~GkVP~L~~--dg~vI~ 62 (74)
T cd03079 2 ALYQPYEEEQILLPDNASCLAVQTFLKMCNLPFNVRCRAN-----AE--F--MSPSGKVPFIRV--GNQIVS 62 (74)
T ss_pred ccccCCccCeeecCCCCCHHHHHHHHHHcCCCcEEEecCC-----cc--c--cCCCCcccEEEE--CCEEEe
Confidence 4678876533 44466664444 45778999887653321 11 1 223489999655 687773
No 44
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=21.82 E-value=1.9e+02 Score=29.32 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=25.5
Q ss_pred HHHHhCCCcEE---------EEecChhhHhcccEEEEecC
Q 019544 256 EIASDCGFQVE---------ERAIPVDELLEADEVFCTGT 286 (339)
Q Consensus 256 ~~a~~~Gi~v~---------e~~i~~~eL~~adevfltnt 286 (339)
+.|+++|+++. |..++.+|+.+||-+++...
T Consensus 28 ~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d 67 (482)
T PRK11404 28 QKARSLGHTIKVETQGSSGVENRLSSEEIAAADYVILATG 67 (482)
T ss_pred HHHHHCCCeEEEEecCCccCCCCCCHHHHHhCCEEEEeec
Confidence 45678998887 55688999999999999865
No 45
>PHA01082 putative transcription regulator
Probab=21.60 E-value=22 Score=28.80 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=26.3
Q ss_pred eEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcCCCCCCCCCee
Q 019544 290 VAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTV 336 (339)
Q Consensus 290 i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~~~~d~~~w~~ 336 (339)
|.-|+..| +|+. ..|-+++|+..|..--=+-.++|.||..
T Consensus 44 VrtVk~WD-~G~~------IPPeCkRLMr~~~gRELs~~e~W~~FrM 83 (133)
T PHA01082 44 VSEVKQWD-AGEK------IPPICKRLMRWHSRRELYYGDEWWGFRM 83 (133)
T ss_pred HHHHhhcc-CCCc------CChHHHHHHHHhcccccccchhhhhhhh
Confidence 44467765 4443 5789999999988644445556777653
No 46
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=21.38 E-value=2.2e+02 Score=26.19 Aligned_cols=53 Identities=25% Similarity=0.296 Sum_probs=39.9
Q ss_pred HHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHHHhCCCcEEEEecChhhHh
Q 019544 197 AISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELL 276 (339)
Q Consensus 197 a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a~~~Gi~v~e~~i~~~eL~ 276 (339)
--.+|+..|+|-+|+.- .+|+--.-..+++.|+++|+.+-...-+.+|+.
T Consensus 123 QI~eA~~~GADaVLLI~------------------------------~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~ 172 (254)
T PF00218_consen 123 QIYEARAAGADAVLLIA------------------------------AILSDDQLEELLELAHSLGLEALVEVHNEEELE 172 (254)
T ss_dssp HHHHHHHTT-SEEEEEG------------------------------GGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHH
T ss_pred HHHHHHHcCCCEeehhH------------------------------HhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHH
Confidence 34567788888777763 256666678999999999999988888999998
Q ss_pred ccc
Q 019544 277 EAD 279 (339)
Q Consensus 277 ~ad 279 (339)
.|-
T Consensus 173 ~al 175 (254)
T PF00218_consen 173 RAL 175 (254)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
No 47
>PRK06683 hypothetical protein; Provisional
Probab=21.08 E-value=1.3e+02 Score=22.46 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhCCCcEEEEecChhhHhcc
Q 019544 249 ITRKSIIEIASDCGFQVEERAIPVDELLEA 278 (339)
Q Consensus 249 ItR~~vi~~a~~~Gi~v~e~~i~~~eL~~a 278 (339)
-+++.+.+.|+..++++..-. +..||..|
T Consensus 40 ~~~~~i~~~~~~~~Vpv~~~~-t~~eLG~A 68 (82)
T PRK06683 40 RLTHVIIRTALQHNIPITKVE-SVRKLGKV 68 (82)
T ss_pred HHHHHHHHHHHhcCCCEEEEC-CHHHHHHH
Confidence 389999999999999999888 99999886
No 48
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=21.06 E-value=1.2e+02 Score=21.54 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=35.9
Q ss_pred HHHHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHH
Q 019544 253 SIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYST 319 (339)
Q Consensus 253 ~vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~ 319 (339)
.+.-++++.|++.+...+...+-....+-|.--+..+-+|+-..+ +|..+ . ....+.+.|-+.
T Consensus 13 ~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~-~g~~l-~--eS~aI~~yL~~~ 75 (77)
T cd03057 13 APHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLD-DGEVL-T--ESAAILQYLADL 75 (77)
T ss_pred HHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEEC-CCcEE-E--cHHHHHHHHHHh
Confidence 344566778998887777654332222233333456888987663 36665 2 245565555443
No 49
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=20.62 E-value=1.3e+02 Score=25.58 Aligned_cols=64 Identities=20% Similarity=0.160 Sum_probs=42.1
Q ss_pred HHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEE---EECCEEEccCCCCCcccChHHHHHHHHHHhCCCcEEE
Q 019544 196 KAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFI---LKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEE 267 (339)
Q Consensus 196 ~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~---v~~g~l~TP~l~~~iL~GItR~~vi~~a~~~Gi~v~e 267 (339)
.+...|++.|++-++.=.. .+-..+....|+.- ..+-.+++|- -++++..|+++++++|+..--
T Consensus 94 ~~~~~A~~~g~~~I~~G~~--~~D~~~~~~~~l~~~~~~~~~~i~rPl------~~~~K~eI~~~a~~~gl~~~~ 160 (177)
T cd01712 94 IAEKLAEELGADAIVTGES--LGQVASQTLENLLVISSGTDLPILRPL------IGFDKEEIIGIARRIGTYDIS 160 (177)
T ss_pred HHHHHHHHcCCCEEEEccC--cccchHHHHHhhhhcccCCCCeEECCC------CCCCHHHHHHHHHHcCCccee
Confidence 4566788889875443211 23355555566543 2356788885 389999999999999975543
No 50
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=20.61 E-value=1.1e+02 Score=27.45 Aligned_cols=27 Identities=26% Similarity=0.585 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCCcEEEEecChhhHhc
Q 019544 251 RKSIIEIASDCGFQVEERAIPVDELLE 277 (339)
Q Consensus 251 R~~vi~~a~~~Gi~v~e~~i~~~eL~~ 277 (339)
-+.+++.|++.|+.|+++.++.+||.+
T Consensus 92 V~~lF~~A~~~gi~V~~rsvs~~ei~~ 118 (212)
T PF09778_consen 92 VNRLFQKAKAAGINVEKRSVSIQEIIE 118 (212)
T ss_pred HHHHHHHHHHcCCceEEeeccHHHHHH
Confidence 356677888899999999999999876
No 51
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=20.23 E-value=1.6e+02 Score=20.66 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=15.2
Q ss_pred cChHHHHHHHHHHh---CCCcEEEEec
Q 019544 247 AGITRKSIIEIASD---CGFQVEERAI 270 (339)
Q Consensus 247 ~GItR~~vi~~a~~---~Gi~v~e~~i 270 (339)
.||||..+....++ .|+ ++.|.+
T Consensus 14 ~GiTRSvIVNALRKleSaGv-IesrSl 39 (61)
T PF08222_consen 14 VGITRSVIVNALRKLESAGV-IESRSL 39 (61)
T ss_dssp HT--HHHHHHHHHHHHHTTS-EEEEET
T ss_pred hCccHHHHHHHHHHHHhcCc-eeeccc
Confidence 59999999987664 675 666664
Done!