Query 019544
Match_columns 339
No_of_seqs 192 out of 1524
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 03:26:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dth_A Branched-chain amino ac 100.0 1.6E-72 5.4E-77 540.7 34.3 328 12-339 22-372 (372)
2 3dtg_A Branched-chain amino ac 100.0 6.1E-71 2.1E-75 531.8 33.2 308 23-339 52-372 (372)
3 3uzo_A Branched-chain-amino-ac 100.0 1.3E-70 4.5E-75 526.0 32.7 326 11-338 17-358 (358)
4 4dqn_A Putative branched-chain 100.0 1.6E-69 5.5E-74 516.8 35.3 311 20-339 29-344 (345)
5 3u0g_A Putative branched-chain 100.0 1E-66 3.4E-71 494.6 34.2 297 20-338 27-328 (328)
6 2a1h_A Branched chain aminotra 100.0 1.7E-66 5.7E-71 500.2 34.6 304 23-338 46-365 (365)
7 2coi_A Branched chain aminotra 100.0 1.6E-66 5.5E-71 502.6 34.5 296 40-339 73-386 (386)
8 2eiy_A ILVE, branched-chain am 100.0 7.7E-64 2.6E-68 472.2 35.1 295 22-339 6-306 (308)
9 1iye_A Branched-chain amino ac 100.0 9E-64 3.1E-68 471.9 34.4 295 22-339 7-308 (309)
10 3daa_A D-amino acid aminotrans 100.0 7.3E-59 2.5E-63 431.7 30.0 266 23-323 2-275 (277)
11 1i2k_A 4-amino-4-deoxychorisma 100.0 1.3E-56 4.5E-61 415.1 30.3 263 24-322 2-267 (269)
12 3lul_A 4-amino-4-deoxychorisma 100.0 2E-56 7E-61 414.3 30.3 263 22-326 4-269 (272)
13 2xpf_A 4-amino-4-deoxychorisma 100.0 6.9E-56 2.3E-60 414.7 29.1 265 23-324 23-290 (292)
14 3sno_A Hypothetical aminotrans 100.0 4.5E-56 1.5E-60 419.3 24.1 268 22-323 15-313 (315)
15 3csw_A BCAT, putative branched 100.0 1.7E-54 5.9E-59 403.9 26.6 267 23-336 16-284 (285)
16 2zgi_A Putative 4-amino-4-deox 100.0 5.7E-48 1.9E-52 352.8 19.0 214 47-297 11-229 (246)
17 3qqm_A MLR3007 protein; struct 100.0 1.4E-44 4.8E-49 325.1 21.2 212 49-295 8-220 (221)
18 3ceb_A D-aminoacid aminotransf 100.0 4.5E-41 1.5E-45 296.5 18.1 189 54-290 2-194 (194)
19 2kyr_A Fructose-like phosphotr 42.7 29 0.00099 26.6 4.3 45 243-287 16-70 (111)
20 2lqo_A Putative glutaredoxin R 38.0 18 0.00061 26.5 2.4 48 254-303 20-67 (92)
21 2r48_A Phosphotransferase syst 30.5 47 0.0016 25.2 3.7 79 243-326 13-101 (106)
22 2r4q_A Phosphotransferase syst 28.2 47 0.0016 25.2 3.3 79 243-326 13-101 (106)
23 2m1z_A LMO0427 protein; homolo 25.7 83 0.0028 23.8 4.3 45 243-287 13-67 (106)
24 3mcb_B Transcription factor BT 25.6 1E+02 0.0034 20.7 4.2 43 204-250 5-55 (58)
25 2h8b_A Insulin-like 3; insulin 25.3 8.5 0.00029 21.2 -1.0 17 242-258 8-24 (26)
26 3lkx_A Transcription factor BT 21.9 96 0.0033 21.4 3.6 42 205-250 6-55 (66)
27 2fz5_A Flavodoxin; alpha/beta 21.7 1.5E+02 0.0051 22.1 5.4 42 247-288 10-57 (137)
No 1
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=1.6e-72 Score=540.69 Aligned_cols=328 Identities=37% Similarity=0.673 Sum_probs=294.4
Q ss_pred ccccccccccCcccceeeeee--hhccccc-------ccc--ccccCCcccchhcccceeeeeEEEeccCCeeeecChhh
Q 019544 12 NWKLYMISFSQIGFWQIRFTT--SAKFKLE-------LVI--FFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQ 80 (339)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~~~--~~~~~~~-------i~p--~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~ 80 (339)
.++...+++++++|++.++++ .++|+.+ ++| ++.++|.|++|+||||||||||+|+++||++++|+|++
T Consensus 22 ~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~W~~g~i~p~~~~~i~~~d~gl~yGdgvFEglkay~~~dG~i~lFrl~~ 101 (372)
T 3dth_A 22 TDAVRESILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGSIVSFRPEA 101 (372)
T ss_dssp CHHHHHHHHHSCCSSSCCCSEEEEEEEETTTEEEEEEEEESCCEEECTTCTHHHHCCEEECCEEEEECTTSCEEEESHHH
T ss_pred CchhcccchhccCCCCccCCceEEEEEcCCCeEECCcEeehHhcccCccccHhhcCcEEEEEEEEEECCCCcEeecCHHH
Confidence 333444567788888877777 5555552 566 77789999999999999999999999999998999999
Q ss_pred HHHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHcCCCCCCC-CCccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCccc
Q 019544 81 NAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPP-GKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF 159 (339)
Q Consensus 81 Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~l~~~~~~~~p~~-~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~ 159 (339)
|++||.+||++|+||.++.++|.+++.++++.|+.|+|+. ..+.+|||++++++++.+|+.|+..+.++|++.|.++|+
T Consensus 102 H~~RL~~Sa~~L~mp~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~lYiRp~~~~~~~~~G~~p~~~~~~~i~~~p~~~y~ 181 (372)
T 3dth_A 102 NAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYF 181 (372)
T ss_dssp HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCSSCSCCSEEEEEEEEEEESCSS
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEcCCCcCCcCCCCCeEEEEEEeeCchhh
Confidence 9999999999999995599999999999999999999875 345899999998877778888877889999999999998
Q ss_pred cCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECC----E
Q 019544 160 KEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----I 235 (339)
Q Consensus 160 ~~g~~~~~l~~~~~~~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g----~ 235 (339)
..|.+++++.+++++.|..|++++.+|+++||+.+++|+++|+++|+||+||+|..++|+|+|++++|||++++| +
T Consensus 182 ~~g~~~v~l~v~~~~~R~~p~g~~~~K~~gNY~~~~la~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~v~~~~~g~~ 261 (372)
T 3dth_A 182 KGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSAR 261 (372)
T ss_dssp SCSSSCEEEEECSSCCSCCTTSSTTSCCHHHHHTTHHHHHHHHHTTCSEEEEECTTTSCBEEEETTEEEEEEESCGGGCE
T ss_pred ccCCccEEEEEccceeccCCCcccchhhHhhhHHHHHHHHHHHHcCCCEEEEEcCCCCCEEEEcCceeEEEEECCCCceE
Confidence 888889998877778999999999999967999999999999999999999999754699999999999999999 9
Q ss_pred EEccCCCCCcccChHHHHHHHHHHhCCCcEEEEecChhhHhcc------cEEEEecCccceEEEEEEEeCCeEEee-CCC
Q 019544 236 ISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSITYRGKRIEF-KTG 308 (339)
Q Consensus 236 l~TP~l~~~iL~GItR~~vi~~a~~~Gi~v~e~~i~~~eL~~a------devfltnt~~~i~pV~~I~~~~~~i~~-~~~ 308 (339)
|+|||++.+|||||||++||++|+++|++|+|++|+++||.+| ||+|+|||+++|+||.+|++.++.+.+ +|+
T Consensus 262 l~TP~l~~~iL~GITR~~vl~la~~~G~~v~Er~i~~~eL~~a~~~g~~dEvf~tgTa~~i~PV~~Id~~~~~~~i~~g~ 341 (372)
T 3dth_A 262 LVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDGEFTIADGQ 341 (372)
T ss_dssp EEECCCCSSSCCCHHHHHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEEEEETTTEEEEEEEEEETTEEEECTTSS
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHHCCCeEEEEECCHHHHHhhhhcCCccEEEEecccceEEEEEEEccCCceEECCCCC
Confidence 9999999999999999999999999999999999999999999 999999999999999999865544322 567
Q ss_pred chHHHHHHHHHHHHhHcCCCCCCCCCeeeCC
Q 019544 309 AQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 339 (339)
Q Consensus 309 ~gp~t~~L~~~~~~~~~~~~~d~~~w~~~~~ 339 (339)
+||+|++|+++|.++|+|+++|++||+++||
T Consensus 342 ~Gpvt~~L~~~l~~iq~g~~~d~~~W~~~v~ 372 (372)
T 3dth_A 342 PGEITMALRDTLTGIQRGTFADTHGWMARLN 372 (372)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCCTTCCEEECC
T ss_pred cCHHHHHHHHHHHHHHcCCCCCCCCCeEECC
Confidence 9999999999999999999999999999997
No 2
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=6.1e-71 Score=531.76 Aligned_cols=308 Identities=39% Similarity=0.713 Sum_probs=279.3
Q ss_pred cccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCHHHH
Q 019544 23 IGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQF 102 (339)
Q Consensus 23 ~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l 102 (339)
-+|.||+++|.+++++ ||.+++|||||||||+||+|++.||++.+||+++|++||.+||++|+||.++.+.+
T Consensus 52 ~gW~ng~ivp~~~~~i--------~p~~~~lhYG~gvFEgiraY~~~dG~i~~Fr~~~h~~Rl~~Sa~~l~iP~~~~e~~ 123 (372)
T 3dtg_A 52 EGWHNAQVIPYGPIQL--------DPSAIVLHYGQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVF 123 (372)
T ss_dssp TEEEEEEEEESCCEEE--------CTTCTHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHH
T ss_pred CcEeCCEEEEchhcee--------CcchhhhhccceeeeeEEEEECCCCeEEeeCchHHHHHHhhcccccCCCCCCHHHH
Confidence 3455555555555555 78999999999999999999999999989999999999999999999998788999
Q ss_pred HHHHHHHHHHcCCCCCCCCC-ccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCccccCCCcceEEEeeccccccCCCC
Q 019544 103 IDAVKQTALANKRWVPPPGK-GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGG 181 (339)
Q Consensus 103 ~~~i~~l~~~~~~~~p~~~~-~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~ 181 (339)
.+++.+++..+..|+|.... .++|||++++++++.+|+.|+..+.+++++.|.++|+..|.++..+.+..++.|..|..
T Consensus 124 ~~~~~~l~~~~~~~v~~~~~~~~~YiRp~~~~~~~~lgv~p~~~~~~~ii~~p~~~~~~~~~~~~~~~~~~~~~R~~p~~ 203 (372)
T 3dtg_A 124 IESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGG 203 (372)
T ss_dssp HHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCCSCSCCSEEEEEEEEEEESCSSTTSSSCEEEEECSSCCSCCTTS
T ss_pred HHHHHHHHHHhhhhccccCCCCceEEEEEEEeecCccCcCCCCCceeeeEecccccccccCcccceeecccceeecCcCC
Confidence 99999999999999986543 48999999998888899998888889999999998888888887777777888999988
Q ss_pred CCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEE----ECCEEEccCCCCCcccChHHHHHHHH
Q 019544 182 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL----KGNIISTPATSGTILAGITRKSIIEI 257 (339)
Q Consensus 182 ~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v----~~g~l~TP~l~~~iL~GItR~~vi~~ 257 (339)
+...|.++||+++++|+++|+++||||+||+|..++|+|+|++++|||+| +||+++|||++.+||+||||++||++
T Consensus 204 ~~~~K~~gNY~~~~la~~eA~~~G~deal~Ld~~~~g~V~E~~~sNiF~V~~~~kdg~liTPpl~~~iL~GITR~sVi~L 283 (372)
T 3dtg_A 204 TGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDSLLQL 283 (372)
T ss_dssp STTSCCHHHHHHHHHHHHHHHHTTCSEEEEECTTTSCBEEEETTEEEEEEESCGGGCEEEECCCCSSSCCCHHHHHHHHH
T ss_pred cchHHhcCCcchhhhHHHHHHhcCcchhhhhccccccceeecCceEEEEEEecCCCceEEeCCccccccccHHHHHHHHH
Confidence 88899888999999999999999999999999655899999999999999 67899999999999999999999999
Q ss_pred HHhCCCcEEEEecChhhHhcc------cEEEEecCccceEEEEEEEeCCe--EEeeCCCchHHHHHHHHHHHHhHcCCCC
Q 019544 258 ASDCGFQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSITYRGK--RIEFKTGAQSVSRELYSTLVGIQTGLIK 329 (339)
Q Consensus 258 a~~~Gi~v~e~~i~~~eL~~a------devfltnt~~~i~pV~~I~~~~~--~i~~~~~~gp~t~~L~~~~~~~~~~~~~ 329 (339)
|+++|++|+||+|+++||.+| ||||+|||+.+|+||.+|++.+. .| ++|++||+|++|+++|.++|+|+.+
T Consensus 284 A~~~Gi~V~Er~it~~El~~A~~~~~~dEvF~tGTaa~I~PV~~Id~~~~~~~i-g~G~~Gpvt~~L~~~~~~iq~G~~~ 362 (372)
T 3dtg_A 284 ATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDGEFTI-ADGQPGEITMALRDTLTGIQRGTFA 362 (372)
T ss_dssp HHHHTCEEEECCCBHHHHHHHHHHTSEEEEEEEETTTEEEEEEEEEETTEEEEC-TTSSCCHHHHHHHHHHHHHHTTSSC
T ss_pred HHHCCceEEEEeCCHHHHHHHhhcCCCcEEEECCCcceEEEEEEEecCCceEEc-CCCCcCHHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999998 99999999999999999987554 34 4788999999999999999999999
Q ss_pred CCCCCeeeCC
Q 019544 330 DNKGWTVEIN 339 (339)
Q Consensus 330 d~~~w~~~~~ 339 (339)
|++||+++||
T Consensus 363 d~~~W~~~v~ 372 (372)
T 3dtg_A 363 DTHGWMARLN 372 (372)
T ss_dssp CTTCCEEECC
T ss_pred CCCCCcEeCC
Confidence 9999999997
No 3
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*
Probab=100.00 E-value=1.3e-70 Score=526.01 Aligned_cols=326 Identities=40% Similarity=0.639 Sum_probs=286.3
Q ss_pred CccccccccccCcccceeeeee--hhccccc------ccc--ccccCCcccchhcccceeeeeEEEeccCCeeeecChhh
Q 019544 11 SNWKLYMISFSQIGFWQIRFTT--SAKFKLE------LVI--FFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQ 80 (339)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~------i~p--~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~ 80 (339)
.+++...+++++++|+..+++| .++|+.+ ++| .+.++|.|++|+||||||||||+|+++||++++|+|++
T Consensus 17 ~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~w~ng~i~p~~~~~i~~~d~gl~yGdgvFE~ir~y~~~dG~i~lfrl~~ 96 (358)
T 3uzo_A 17 QAKKLADIDWSTLGFSYIRTDLRYLAHWKDGEWDAGTLTEDNQIHLAEGSTALHYGQQCFEGLKAYRCADGSINLFRPDQ 96 (358)
T ss_dssp -------CCGGGCCSCCCCCSCEEEEEEETTEECCCEEESCCEEEEETTCHHHHSCCEEECCEEEEECTTSCEEECCHHH
T ss_pred ccccccCCCcccCCCCCcccCeeEEEEEeCCcEECCEEeEcccceeChHHcceecCcEEEEEEEEEECCCCcEeecCHHH
Confidence 4445566778889998888888 4555544 677 77889999999999999999999999999999999999
Q ss_pred HHHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCC-ccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCccc
Q 019544 81 NAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK-GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF 159 (339)
Q Consensus 81 Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~l~~~~~~~~p~~~~-~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~ 159 (339)
|++||.+||++|+||.++.++|.+++.++++.|+.|+|+... +.+|||++++++++.+|+.|+..+.++|++.|.++|+
T Consensus 97 Hl~RL~~Sa~~L~ip~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~G~~p~~~~~~~i~~~P~~~~~ 176 (358)
T 3uzo_A 97 NAARMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGGSLYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYF 176 (358)
T ss_dssp HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSCCEEEEEEEEEEESSCCSSSCCSEEEEEEEEEEECCSS
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCCceEEEEEEEEecCCccccCCCCCeEEEEEEecChhhh
Confidence 999999999999999559999999999999999999987544 4899999999887778888877788999999999888
Q ss_pred cCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEE-CCE-EE
Q 019544 160 KEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK-GNI-IS 237 (339)
Q Consensus 160 ~~g~~~~~l~~~~~~~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~-~g~-l~ 237 (339)
+.|.+++++.++ ++.|..|+.++++|+++||+.+++|+++|+++|+||+||+|.+++|+|+|++++|||+++ ||+ |+
T Consensus 177 ~~g~~~v~l~~~-~~~R~~p~~~~~~K~~~NYl~~vla~~eA~~~G~~e~l~ld~~~~g~V~E~~~sNif~v~~dg~~l~ 255 (358)
T 3uzo_A 177 KGGLTPTNFITS-DYDRAAPHGTGAAKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFV 255 (358)
T ss_dssp CSSSCCEEEECC-SCCSSCTTSSTTSCBHHHHHHHHHHHHHHHHTTCSEECCBCTTTSCBBCBCSSSEEEEEETTSCEEE
T ss_pred hcCCccEEEEEE-eeeccCCCccccccchhhhHHHHHHHHHHHHcCCCEEEEEeCCCCCeEEEcCCeeEEEEECCCeEEE
Confidence 888889988766 488999998999996569999999999999999999999998434999999999999995 788 99
Q ss_pred ccCCCCCcccChHHHHHHHHHHh-CCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEee-C-CCchHHHH
Q 019544 238 TPATSGTILAGITRKSIIEIASD-CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEF-K-TGAQSVSR 314 (339)
Q Consensus 238 TP~l~~~iL~GItR~~vi~~a~~-~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~-~-~~~gp~t~ 314 (339)
||| +.+||+||||+.|+++|++ +|++|+|++|+++||.+|||+|+|||+++|+||.+|+..++.+.+ + +++||+|+
T Consensus 256 TP~-~~~iL~GItR~~vl~la~~~~g~~v~e~~i~~~eL~~adEvf~t~t~~~i~PV~~Id~~~~~~~i~~~~~~Gpvt~ 334 (358)
T 3uzo_A 256 TPQ-SPSILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQHGDDFHVFYSESEPGPVTR 334 (358)
T ss_dssp EEC-CTTSCCCHHHHHHHHHHHHTTCCEEEEECCBTTCGGGEEEEEEECTTTSSEEEEEEEETTEEEESSCSSSCCHHHH
T ss_pred ECC-cCCcccCHHHHHHHHHHHhhcCCeEEEEECCHHHHHhhcceeEEcCcceEEEEEEECcccceeEeCCCCCcCHHHH
Confidence 999 8999999999999999999 999999999999999999999999999999999999865543323 2 35999999
Q ss_pred HHHHHHHHhHcCCCCCCCCCeeeC
Q 019544 315 ELYSTLVGIQTGLIKDNKGWTVEI 338 (339)
Q Consensus 315 ~L~~~~~~~~~~~~~d~~~w~~~~ 338 (339)
+|+++|.++|+|+.+|++||+++|
T Consensus 335 ~L~~~~~~iq~g~~~~~~~W~~~v 358 (358)
T 3uzo_A 335 RLYDELVGIQYGDKEAPEGWIVKV 358 (358)
T ss_dssp HHHHHHHHHHTTSSCCCTTCCEEC
T ss_pred HHHHHHHHHHcCCCCCCCCCceEC
Confidence 999999999999999999999986
No 4
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}
Probab=100.00 E-value=1.6e-69 Score=516.75 Aligned_cols=311 Identities=41% Similarity=0.675 Sum_probs=277.5
Q ss_pred ccCcccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCH
Q 019544 20 FSQIGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSI 99 (339)
Q Consensus 20 ~~~~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~ 99 (339)
++.-.|.||+++|.+++++ ++.|++|+||||||||||+|++++|++++|+|++|++||.+||++|+|+.++.
T Consensus 29 ~~~~~w~nG~~vp~~~~~i--------~~~d~gl~yGdgvFE~ir~~~g~dg~~~~f~l~~Hl~RL~~Sa~~L~i~~~~~ 100 (345)
T 4dqn_A 29 YKDGKWDDGKLTEDATLHI--------SESSPALHYGQEAFEGLKAYRTKDGSVQLFRPNMNAERLQRTADRLLMPQVPT 100 (345)
T ss_dssp EETTEECCCEEESCCSCCC--------CTTCHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCH
T ss_pred ecCCcEECCEEeEhhhccc--------CccccccccccEEEEEEEEEeCCCCcccccCHHHHHHHHHHHHHHhCCCCCCH
Confidence 3333477788888777777 56999999999999999999999999889999999999999999999995599
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCC-ccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCccccCCCcceEEEeeccccccC
Q 019544 100 DQFIDAVKQTALANKRWVPPPGK-GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRAT 178 (339)
Q Consensus 100 ~~l~~~i~~l~~~~~~~~p~~~~-~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~ 178 (339)
++|.+++.++++.|+.|+|+... +.+|||++++++++.+|+.|+..++++|++.|.++|+..+.+++++.+++++.|..
T Consensus 101 ~~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~~~~gv~l~~~~~~~R~~ 180 (345)
T 4dqn_A 101 DKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAA 180 (345)
T ss_dssp HHHHHHHHHHHHHTGGGSCCTTSSCEEEEEEEEEEESCCCSSCCCSEEEEEEEEEEECCSCTTSCCCEEEEECTTCCSSC
T ss_pred HHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEeCCCccCCCCCCCeEEEEEEEECccccccCCCCEEEEEccceEecC
Confidence 99999999999999999987434 48999999888777788877777889999999888877667788887776688999
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEE-ECCEEEccCCCCCcccChHHHHHHHH
Q 019544 179 PGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL-KGNIISTPATSGTILAGITRKSIIEI 257 (339)
Q Consensus 179 p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v-~~g~l~TP~l~~~iL~GItR~~vi~~ 257 (339)
|+.++++|+++||+.+++|+++|+++|+||+||+|.+++|+|+|++++|||++ +||+|+||| +.+||+||||+.||++
T Consensus 181 ~~~~~~~Kt~~nyl~~vla~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~v~~~g~l~TP~-~~~iL~GitR~~vl~l 259 (345)
T 4dqn_A 181 PHGTGAAKVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITPL-SPSILPSVTKYSLLYL 259 (345)
T ss_dssp TTSSTTSCCHHHHHHHHHHHHHHHHTTCSCEEEECTTTSCBEEEETTEEEEEEETTCEEEECC-CTTSCCCHHHHHHHHH
T ss_pred CCccccccccccCHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEcCCceEEEEecCCEEEeCC-CCCccHHHHHHHHHHH
Confidence 99999999945999999999999999999999999733499999999999998 899999999 9999999999999999
Q ss_pred HHh-CCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEee-CC-CchHHHHHHHHHHHHhHcCCCCCCCCC
Q 019544 258 ASD-CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEF-KT-GAQSVSRELYSTLVGIQTGLIKDNKGW 334 (339)
Q Consensus 258 a~~-~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~-~~-~~gp~t~~L~~~~~~~~~~~~~d~~~w 334 (339)
|++ +|++|+|+.|+++||..|||+|+|||+++|+||.+|+..++.+.+ ++ ++||+|++|+++|.++++|+.+|++||
T Consensus 260 a~~~~g~~v~e~~i~~~el~~adevf~t~t~~~i~PV~~Id~~~~~~~i~~~~~~Gpvt~~L~~~~~~i~~g~~~~~~~W 339 (345)
T 4dqn_A 260 AEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHGDDFHVFYSETEVGPVTHKLYDELTGIQFGDVKAPEGW 339 (345)
T ss_dssp HHHTTCCEEEECCCBTTCGGGEEEEEEEETTTEEEEEEEEEETTEEEESSCSSSCCHHHHHHHHHHHHHHTTSSCCCTTC
T ss_pred HHhccCCeEEEEeCCHHHHHhhhHHhhhcchhHEEEEEEECcccceeeeCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 999 999999999999999999999999999999999999854543333 33 599999999999999999999999999
Q ss_pred eeeCC
Q 019544 335 TVEIN 339 (339)
Q Consensus 335 ~~~~~ 339 (339)
+++|.
T Consensus 340 ~~~v~ 344 (345)
T 4dqn_A 340 IYKVD 344 (345)
T ss_dssp EEETT
T ss_pred ceECC
Confidence 99984
No 5
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}
Probab=100.00 E-value=1e-66 Score=494.55 Aligned_cols=297 Identities=26% Similarity=0.390 Sum_probs=262.7
Q ss_pred ccCcccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-C
Q 019544 20 FSQIGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-S 98 (339)
Q Consensus 20 ~~~~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~ 98 (339)
.+..+|.||+++|.++++++ +.|++|+||||||||+|+|+..+|++++|+|++|++||.+||++|+|+.| +
T Consensus 27 ~~~~~w~nG~~vp~~~~~i~--------~~drg~~yGdgvFEtir~~~~~dG~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~ 98 (328)
T 3u0g_A 27 RDGKIWMDGKLIEWRDAKIH--------VLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFD 98 (328)
T ss_dssp CCSEEEETTEEEEGGGCEEE--------SSCHHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCSSC
T ss_pred CCCEEEECCEEeehHhCccC--------ccchHHhcCceEEEEEEEEECCCCCeeeCCHHHHHHHHHHHHHHHCCCCCCC
Confidence 34678999999999999995 59999999999999999998778866689999999999999999999988 9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCCC-CeEEEEEEeeCCccccCC--CcceEEEeecccc
Q 019544 99 IDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP-EYTFLVFASPVGNYFKEG--LAPLNLYVEDEFH 175 (339)
Q Consensus 99 ~~~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~-~~~~~i~~~p~~~~~~~g--~~~~~l~~~~~~~ 175 (339)
.++|.+++.++++.|+. .++|||++++++.+.+|+.|.. .++++|++.|.+.|+..+ .+++++.++ ++.
T Consensus 99 ~~~l~~~i~~lv~~n~~-------~~~~iR~~vtrg~~~~g~~p~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~ 170 (328)
T 3u0g_A 99 QETLEAAQRDVVRENKL-------ESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTS-SFT 170 (328)
T ss_dssp HHHHHHHHHHHHHHTTC-------SSEEEEEEEEECSSCCSTTCCCCCEEEEEEEEECC----HHHHHHCEEEEEC-SSC
T ss_pred HHHHHHHHHHHHHhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEEEcCCCCChhhhcCCEEEEEe-eee
Confidence 99999999999999873 4689999988665567776553 578888899887764321 135667554 577
Q ss_pred ccCCCC-CCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHH
Q 019544 176 RATPGG-AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSI 254 (339)
Q Consensus 176 r~~p~~-~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~v 254 (339)
|..|+. ++++|+++||+.+++|+++|+++|+||+||+|+ +|+|+|++++|||+++||+|+|||++. ||+||||+.|
T Consensus 171 R~~~~~~~~~~K~t~nyl~~vla~~eA~~~G~~e~l~ld~--~g~v~E~~~sNif~v~~g~l~TP~~~~-iL~GitR~~v 247 (328)
T 3u0g_A 171 RHHVNVSMVRAKASGWYVNSILANQEATADGYDEALLLDV--DGYVSEGSGENFFLVNRGKLYTPDLAS-CLDGITRDTV 247 (328)
T ss_dssp CCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEECT--TSCEEEESSSEEEEEETTEEEECCSSS-SCCCHHHHHH
T ss_pred ecCCCCcccchhhhhhhHHHHHHHHHHHHCCCCEEEEECC--CCcEEEcCceeEEEEECCEEEeCCccc-cchHHHHHHH
Confidence 888776 789994469999999999999999999999998 899999999999999999999999987 9999999999
Q ss_pred HHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcCCCCCCCCC
Q 019544 255 IEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGW 334 (339)
Q Consensus 255 i~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~~~~d~~~w 334 (339)
+++|+++|++|+|+.|+++||.+|||+|+|||+++|+||.+| |++.++ +|++||+|++|+++|.++++|+.+|++||
T Consensus 248 l~~a~~~g~~v~e~~i~~~eL~~adevf~tns~~~v~PV~~I--d~~~~~-~g~~g~vt~~L~~~~~~~~~g~~~~~~~W 324 (328)
T 3u0g_A 248 ITLAKEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTPIREL--DNRTIG-GGARGPITEKLQSAFFDVVNGKSAKHADW 324 (328)
T ss_dssp HHHHHHTTCCEEECCCCHHHHHTCSEEEEEETTTEEEEEEEE--TTEECT-TSSCCHHHHHHHHHHHHHHTTCCSTTGGG
T ss_pred HHHHHHcCCeEEEEeCCHHHHhhCCEEEEEcchhhEEEEEEE--CCEECC-CCCCCHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 999999999999999999999999999999999999999999 588873 77899999999999999999999999999
Q ss_pred eeeC
Q 019544 335 TVEI 338 (339)
Q Consensus 335 ~~~~ 338 (339)
+++|
T Consensus 325 ~~~v 328 (328)
T 3u0g_A 325 LTKI 328 (328)
T ss_dssp EEEC
T ss_pred ceeC
Confidence 9987
No 6
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*
Probab=100.00 E-value=1.7e-66 Score=500.18 Aligned_cols=304 Identities=34% Similarity=0.594 Sum_probs=270.6
Q ss_pred cccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCHHHH
Q 019544 23 IGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQF 102 (339)
Q Consensus 23 ~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l 102 (339)
.+|.||+++|.+++++ ++.|++|+||||||||||+|++++|++++|+|++|++||.+||++|+|+.++.++|
T Consensus 46 ~~w~ng~~~p~~~~~i--------~~~d~~l~yG~gvFEt~r~y~g~dG~i~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l 117 (365)
T 2a1h_A 46 KGWGQPRIQPFQNLTL--------HPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLEL 117 (365)
T ss_dssp TEECCCEEEESCCEEE--------CTTBHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHH
T ss_pred CeEECCEEeEccccee--------CccchhhhcCceeEeEEEEEecCCCceeecCHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 4455666666666555 67999999999999999999998998878999999999999999999994489999
Q ss_pred HHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCccccCC-CcceEEEeeccccccCCCC
Q 019544 103 IDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGG 181 (339)
Q Consensus 103 ~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~g-~~~~~l~~~~~~~r~~p~~ 181 (339)
.+++.++++.|+.|+|......+|||++++++++.+|+.|+.+++++|++.|.++|+..| .+++++.+++.+.|..|+.
T Consensus 118 ~~~i~~lv~~~~~~~p~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~g~~~~v~l~~~~~~~R~~~~~ 197 (365)
T 2a1h_A 118 LECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGG 197 (365)
T ss_dssp HHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCCSEEEEEEEEEEECCSSSSSSCCCEEEEECTTCCSCCTTS
T ss_pred HHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCCCCcEEEEEEEECccccccccccceEEEEccccccCCCCc
Confidence 999999999998888753223799999998776678887777888999999999888777 7788887776677888888
Q ss_pred CCCcccccChHHHHHHHHHHHHCCCCeEEEE-ccCCCCeEEecCceeEEEEE---CCE--EEccCCCCCcccChHHHHHH
Q 019544 182 AGGVKAISNYAPVLKAISRAKNRGFSDVLYL-DSVNKKNLEEVSSCNIFILK---GNI--ISTPATSGTILAGITRKSII 255 (339)
Q Consensus 182 ~~~~Kt~~ny~~~~~a~~eA~~~g~de~Lll-d~~~~g~v~E~s~sNif~v~---~g~--l~TP~l~~~iL~GItR~~vi 255 (339)
++++|+++||+.+++++++|+++|+||+||+ |. +|+|+|++++|||+++ ||+ |+|||++.+||+||||+.||
T Consensus 198 ~~~~Kt~~ny~~~~la~~eA~~~G~de~L~l~d~--~G~V~E~~~sNif~v~~~~dg~~~l~TP~l~~~iL~GITR~~vl 275 (365)
T 2a1h_A 198 VGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGP--DHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLL 275 (365)
T ss_dssp STTSCBGGGTTTHHHHHHHHHHTTCSEEEEEETT--TTEEEEETTEEEEEEEECTTSCEEEEECCCSSSSCCCHHHHHHH
T ss_pred cchhchhhccHHHHHHHHHHHHcCCCeEEEEECC--CCeEEEcCceEEEEEEecCCCcEEEEeCCCCCCccccHHHHHHH
Confidence 9999985699999999999999999999999 76 8999999999999997 776 99999999999999999999
Q ss_pred HHHHh-CCCcEEEEecChhhHhcc------cEEEEecCccceEEEEEEEeCCeEEee--CCCchHHHHHHHHHHHHhHcC
Q 019544 256 EIASD-CGFQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSITYRGKRIEF--KTGAQSVSRELYSTLVGIQTG 326 (339)
Q Consensus 256 ~~a~~-~Gi~v~e~~i~~~eL~~a------devfltnt~~~i~pV~~I~~~~~~i~~--~~~~gp~t~~L~~~~~~~~~~ 326 (339)
++|++ +|++|+|+.|+++||.+| ||+|+|||+++|+||.+|+++++.+.. +|++||+|++|+++|.++++|
T Consensus 276 ~la~~~~G~~v~Er~i~~~eL~~A~~~g~~dEvf~tnt~~~i~PV~~i~~~~~~~~~~~~g~~g~vt~~L~~~~~~~~~g 355 (365)
T 2a1h_A 276 DMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELILRFQKELKEIQYG 355 (365)
T ss_dssp HHHHHHTSSEEEECCCBHHHHHHHHHTTCEEEEEEEETTTEEEEEEEEEETTEEEECTTGGGTTHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCceEEEeCCHHHHHHHHhcCCccEEEEcCCeeEEEEEEEEEeCCeEEeeCCCCCcCHHHHHHHHHHHHHHcC
Confidence 99999 599999999999999999 999999999999999999877887643 356899999999999999999
Q ss_pred CCCCCCCCeeeC
Q 019544 327 LIKDNKGWTVEI 338 (339)
Q Consensus 327 ~~~d~~~w~~~~ 338 (339)
+.+ +||+++|
T Consensus 356 ~~~--~~W~~~v 365 (365)
T 2a1h_A 356 IRA--HEWMFPV 365 (365)
T ss_dssp SSC--CTTEEEC
T ss_pred CCC--CCCeeeC
Confidence 987 8999986
No 7
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*
Probab=100.00 E-value=1.6e-66 Score=502.65 Aligned_cols=296 Identities=32% Similarity=0.589 Sum_probs=264.4
Q ss_pred ccc--ccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHcCCCC
Q 019544 40 LVI--FFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWV 117 (339)
Q Consensus 40 i~p--~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~l~~~~~~~~ 117 (339)
++| ++.++|.|++|+||||||||||+|++.||++++|+|++|++||.+||++|+||.++.++|.+++.++++.|+.|+
T Consensus 73 ~~p~~~~~i~~~d~~l~yG~gvFEg~k~y~g~dg~i~~frld~H~~RL~~Sa~~l~~p~~~~e~~~~~i~~lv~~~~~~v 152 (386)
T 2coi_A 73 IKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWV 152 (386)
T ss_dssp EEECCCEEECTTCHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGS
T ss_pred EeecccCccCcccchhhcCceeEEEEEEEeCCCCceeecCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccC
Confidence 445 555688999999999999999999999999889999999999999999999994489999999999999999888
Q ss_pred CCCCCccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCccccCC-CcceEEEeeccccccCCCCCCCcccccChHHHHH
Q 019544 118 PPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLK 196 (339)
Q Consensus 118 p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~g-~~~~~l~~~~~~~r~~p~~~~~~Kt~~ny~~~~~ 196 (339)
|+...+.+|||++++|.++.+|+.|+.++.++|++.|.++|+..| .+++++.+++.+.|..|..++++|+++||+.+++
T Consensus 153 p~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~y~~~~~~~~v~l~~~~~~~r~~p~~~g~~K~~~Ny~~~~l 232 (386)
T 2coi_A 153 PYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLF 232 (386)
T ss_dssp CSSSSCEEEEEEEEEECCCSCSCSCCSEEEEEEEEEEECCCC-----CCEEEEECTTCCSCCTTSSTTSCCTHHHHTTHH
T ss_pred CCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEEECcccccccccccEEEEEcccccccCCCcccccccccChHHHHH
Confidence 854334899999999877678888877889999999999888777 6788887776667888888889998569999999
Q ss_pred HHHHHHHCCCCeEEEEc-cCCCCeEEecCceeEEEEE---CC--EEEccCCCCCcccChHHHHHHHHHHh-CCCcEEEEe
Q 019544 197 AISRAKNRGFSDVLYLD-SVNKKNLEEVSSCNIFILK---GN--IISTPATSGTILAGITRKSIIEIASD-CGFQVEERA 269 (339)
Q Consensus 197 a~~eA~~~g~de~Llld-~~~~g~v~E~s~sNif~v~---~g--~l~TP~l~~~iL~GItR~~vi~~a~~-~Gi~v~e~~ 269 (339)
++++|+++|+||+||+| . +|+|+|++++|||+++ || +|+|||++.+||+||||+.||++|++ +|++|+|++
T Consensus 233 a~~eA~~~G~de~L~ld~~--~g~V~E~~~sNiF~v~~~~~g~~~l~TP~l~~~iL~GITR~~vl~la~~~~G~~V~Er~ 310 (386)
T 2coi_A 233 AQCEAVDNGCQQVLWLYGE--DHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERY 310 (386)
T ss_dssp HHHHHHTTTCSEEEEEETT--TTEEEEETTEEEEEEEECTTSCEEEEECCCSSSSCCCHHHHHHHHHHHHHCSSEEEECC
T ss_pred HHHHHHHcCCCEEEEEECC--CCEEEEeCCceEEEEEEcCCCCEEEEECCCCCCccHHHHHHHHHHHHHhccCCcEEEEE
Confidence 99999999999999999 5 7999999999999997 88 99999999999999999999999999 899999999
Q ss_pred cChhhHhcc------cEEEEecCccceEEEEEEEeCCeEEee--CCCchHHHHHHHHHHHHhHcCCCCCCCCCeeeCC
Q 019544 270 IPVDELLEA------DEVFCTGTAVVVAPVGSITYRGKRIEF--KTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 339 (339)
Q Consensus 270 i~~~eL~~a------devfltnt~~~i~pV~~I~~~~~~i~~--~~~~gp~t~~L~~~~~~~~~~~~~d~~~w~~~~~ 339 (339)
|+++||.+| ||+|+|||+++|+||.+|++.++.+.. +|++||+|++|+++|.++|+|+++ +||+++|+
T Consensus 311 i~~~eL~~A~~~g~~dEvF~tgTa~~i~PV~~I~~~~~~~~~~~~g~~g~vt~~L~~~l~~iq~g~~~--~~W~~~v~ 386 (386)
T 2coi_A 311 LTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREE--RDWTIVLS 386 (386)
T ss_dssp CBHHHHHHHHTTTCEEEEEEEETTTEEEEEEEEEESSSEEECGGGGGTTHHHHHHHHHHHHHHTTSSC--CTTEEEC-
T ss_pred CCHHHHHHHHhcCCccEEEEecceeEEEEEEEEeeCCeEEecCCCCCcCHHHHHHHHHHHHHhCCCCC--CCCeEeCC
Confidence 999999999 999999999999999999877888753 345899999999999999999987 79999984
No 8
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Probab=100.00 E-value=7.7e-64 Score=472.20 Aligned_cols=295 Identities=29% Similarity=0.386 Sum_probs=257.4
Q ss_pred CcccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CHH
Q 019544 22 QIGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SID 100 (339)
Q Consensus 22 ~~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~~ 100 (339)
..+|.||+++|.++++++ +.|++|+||||+|||||+|++.+|. .+|+|++|++||.+||++|+|+.| +.+
T Consensus 6 ~~~~~nG~~~~~~~~~i~--------~~d~g~~yG~gvFEtir~~~g~~g~-~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~ 76 (308)
T 2eiy_A 6 GLIWMNGAFVPQEEAKTS--------VLSHALHYGTSVFEGIRAYETAKGP-AIFRLKEHVKRFYNSAKVLRMEIPFAPE 76 (308)
T ss_dssp CSEEETTEEECGGGCCCC--------TTCHHHHHCCEEECCEEEECCTTSC-EEETHHHHHHHHHHHHHHTTCCCSSCHH
T ss_pred CeEEECCEEeEhHHCccC--------ccchHhhhcceEEEEEEEECCCCcc-cccCHHHHHHHHHHHHHHhCCCCCCCHH
Confidence 467999999999999884 5999999999999999999776665 589999999999999999999987 899
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCC--CCeEEEEEEeeCCccccCC--CcceEEEeeccccc
Q 019544 101 QFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHR 176 (339)
Q Consensus 101 ~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~--~~~~~~i~~~p~~~~~~~g--~~~~~l~~~~~~~r 176 (339)
++.+.+.++++.++. +.+|||++++++++.+++.|. ..++++|.+.|.+.|+..+ .+++++.++ ++.|
T Consensus 77 ~l~~~i~~~~~~~~~-------~~~~iR~~v~~g~~~~~~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~r 148 (308)
T 2eiy_A 77 ELEEAIKEVVRRNGY-------RSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITS-SWAR 148 (308)
T ss_dssp HHHHHHHHHHHHTTC-------SSEEEEEEEECCSSCCSSCCGGGCSCEEEEEEEEC--------CCSCEEEEEC-SSCB
T ss_pred HHHHHHHHHHHhCCC-------CcEEEEEEEEecCCccCcCCCCCCCeEEEEEEEEcCccCCcccccCCeEEEEe-ccee
Confidence 999999999998762 468999998865556676654 4678889999987764322 245667554 5677
Q ss_pred cCCCC-CCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHH
Q 019544 177 ATPGG-AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSII 255 (339)
Q Consensus 177 ~~p~~-~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi 255 (339)
..|+. ++++|+++||+.+++++++|+++|+||+||+|. +|+|+|++++|||+++||+|+|||++. +|+||||+.|+
T Consensus 149 ~~~~~~~~~~Kt~~ny~~~~la~~~A~~~G~de~l~ld~--~G~V~Egs~sNif~v~~g~l~TP~~~~-iL~GitR~~ll 225 (308)
T 2eiy_A 149 FPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDE--EGYVAEGSGENLFFVRDGVIYALEHSV-NLEGITRDSVI 225 (308)
T ss_dssp CCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEEBT--TSSEEEESSCEEEEEETTEEEEECCTT-SCCCHHHHHHH
T ss_pred cCCCCcCcceehhhhHHHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCceEEEEEECCEEEeCCcCC-CCchHHHHHHH
Confidence 77764 589999866999999999999999999999998 899999999999999999999999988 99999999999
Q ss_pred HHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcCCCCCCCCCe
Q 019544 256 EIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWT 335 (339)
Q Consensus 256 ~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~~~~d~~~w~ 335 (339)
++|+++|++|+|+.|+++||.+|||+|+|||++||+||.+| +++.+. +|++||+|++|+++|.++++|+.+|++||+
T Consensus 226 ~~a~~~g~~v~E~~i~~~dL~~adevfltns~~gv~pV~~i--d~~~~~-~g~~g~~~~~l~~~~~~~~~~~~~~~~~w~ 302 (308)
T 2eiy_A 226 RIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMI--DWRPIG-KGTAGPVALRLREVYLEAVTGRRPEYEGWL 302 (308)
T ss_dssp HHHHHTTCCEEEECCCHHHHHTCSEEEEEETTTEEEEEEEE--TTEECT-TSSCCHHHHHHHHHHHHHHTTCCGGGGGGE
T ss_pred HHHHHCCCeEEEEeCCHHHHhhCCEEEEccCcceEEEEEEE--cCEECC-CCCCCHHHHHHHHHHHHHHcCCCCCccCCC
Confidence 99999999999999999999999999999999999999999 588873 677899999999999999999999999999
Q ss_pred eeCC
Q 019544 336 VEIN 339 (339)
Q Consensus 336 ~~~~ 339 (339)
++|.
T Consensus 303 ~~v~ 306 (308)
T 2eiy_A 303 TYVN 306 (308)
T ss_dssp EECC
T ss_pred eeCC
Confidence 9984
No 9
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=100.00 E-value=9e-64 Score=471.93 Aligned_cols=295 Identities=27% Similarity=0.465 Sum_probs=261.5
Q ss_pred CcccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCC-eeeecChhhHHHHHHHhHhcCCCCCC-CH
Q 019544 22 QIGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDG-QLVLFRPDQNAIRLQTGAERMCMPSP-SI 99 (339)
Q Consensus 22 ~~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G-~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~ 99 (339)
..+|.||+++|.++++++ +.|++|+||||+|||||+|++.+| + +|+|++|++||.+||+.|+|+.| +.
T Consensus 7 ~~~~~ng~~~~~~~~~i~--------~~d~g~~yG~gvFEtir~~~~~~G~~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~ 76 (309)
T 1iye_A 7 DYIWFNGEMVRWEDAKVH--------VMSHALHYGTSVFEGIRCYDSHKGPV--VFRHREHMQRLHDSAKIYRFPVSQSI 76 (309)
T ss_dssp SEEEETTEEEEGGGCCCC--------TTCHHHHHCCEEECCEEEECCTTSSE--EETHHHHHHHHHHHHHHHTCCCCSCH
T ss_pred CeEEECCEEEEhHHcccC--------ccchHHhccceeEEEEEEEECCCCcE--EcCHHHHHHHHHHHHHHhCCCCCCCH
Confidence 467999999999999884 599999999999999999976678 5 78899999999999999999977 89
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCC--CCeEEEEEEeeCCccccCC--CcceEEEeecccc
Q 019544 100 DQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFH 175 (339)
Q Consensus 100 ~~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~--~~~~~~i~~~p~~~~~~~g--~~~~~l~~~~~~~ 175 (339)
+++.+.+.++++.|+. +.+|||++++++.+.+++.|. ..++++|.+.|.+.|+..+ .+++++.++ ++.
T Consensus 77 ~~l~~~i~~~~~~~~~-------~~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~ 148 (309)
T 1iye_A 77 DELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVS-SWN 148 (309)
T ss_dssp HHHHHHHHHHHHHTTC-------SSEEEEEEEEECSSCSSSSCCTTCCEEEEEEEECCCCTTCTTHHHHCEEEEEC-SSC
T ss_pred HHHHHHHHHHHHhcCC-------CCEEEEEEEEeCCCccCCCCCCCCCcEEEEEEEEcCccCCcccccCCeEEEEe-eee
Confidence 9999999999998762 478999988865556776644 3678888899887765432 135667554 577
Q ss_pred ccCCCC-CCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHH
Q 019544 176 RATPGG-AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSI 254 (339)
Q Consensus 176 r~~p~~-~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~v 254 (339)
|..|+. ++++|+++||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+|||++.++|+||||+.|
T Consensus 149 r~~~~~~~~~~K~~~ny~~~~la~~~A~~~G~de~l~ld~--~G~V~Egs~sNif~v~~g~l~TP~l~~~iL~GitR~~l 226 (309)
T 1iye_A 149 RAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDV--NGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAI 226 (309)
T ss_dssp CCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEECT--TSBEEEETTBEEEEEETTEEEECCGGGTCCCCHHHHHH
T ss_pred ccCCCCCCccccchhhhHHHHHHHHHHHHcCCCEEEEECC--CCcEEEcCceEEEEEECCEEECCCCCCCCCCCHHHHHH
Confidence 877765 489998569999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcCCCCCCCCC
Q 019544 255 IEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGW 334 (339)
Q Consensus 255 i~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~~~~d~~~w 334 (339)
+++|+++|++|+|+.|+++||.+|||+|+|||++||+||.+| |++.++ +|.+||+|++|+++|.++++|+.+|++||
T Consensus 227 l~~a~~~g~~v~E~~i~~~eL~~adevfltns~~gv~PV~~i--d~~~~~-~g~~g~~~~~l~~~~~~~~~g~~~~~~~w 303 (309)
T 1iye_A 227 IKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV--DGIQVG-EGRCGPVTKRIQQAFFGLFTGETEDKWGW 303 (309)
T ss_dssp HHHHHHTTCCEEECCCBTTHHHHCSEEEEEETTTEEEEEEEE--TTEECT-TSSCCHHHHHHHHHHHGGGTTSSCCCSCC
T ss_pred HHHHHHcCCeEEEEeCCHHHHhhCcEEEEccCCCEEEEEEEE--CCEECC-CCCCCHHHHHHHHHHHHHHcCCCCccCCC
Confidence 999999999999999999999999999999999999999999 588873 67799999999999999999999999999
Q ss_pred eeeCC
Q 019544 335 TVEIN 339 (339)
Q Consensus 335 ~~~~~ 339 (339)
+++|.
T Consensus 304 ~~~v~ 308 (309)
T 1iye_A 304 LDQVN 308 (309)
T ss_dssp EEECC
T ss_pred CeECC
Confidence 99984
No 10
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=100.00 E-value=7.3e-59 Score=431.68 Aligned_cols=266 Identities=23% Similarity=0.356 Sum_probs=228.2
Q ss_pred cccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CHHH
Q 019544 23 IGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQ 101 (339)
Q Consensus 23 ~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~~~ 101 (339)
++|+||+++|.++++++ +.|++|+||||||||||+| +|+ +|+|++|++||.+||++|+|+.| +.++
T Consensus 2 ~~~~nG~~~~~~~~~i~--------~~d~g~~yGdgvFEtir~~---~g~--~f~l~~Hl~RL~~Sa~~l~i~~~~~~~~ 68 (277)
T 3daa_A 2 YTLWNDQIVKDEEVKID--------KEDRGYQFGDGVYEVVKVY---NGE--MFTVNEHIDRLYASAEKIRITIPYTKDK 68 (277)
T ss_dssp EEEETTEEEEGGGCCBC--------TTBHHHHTCCEEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHTTCCCSSCHHH
T ss_pred EEEECCEEeEhHHCeec--------hhhhHHhcccEEEEEEEEE---CCE--EcCHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 57999999999999994 5999999999999999998 555 78999999999999999999987 8999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccEEEEEEEe-ecCCccccC-C--CCCeEEEEEEeeCCcc---ccCCCcceEEEeeccc
Q 019544 102 FIDAVKQTALANKRWVPPPGKGSLYIRPLLV-GSGPILGLA-P--APEYTFLVFASPVGNY---FKEGLAPLNLYVEDEF 174 (339)
Q Consensus 102 l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~-g~~~~~~~~-~--~~~~~~~i~~~p~~~~---~~~g~~~~~l~~~~~~ 174 (339)
+.+++.++++.|+. .++. ||+.++ |.++ .+.. | ..++++++++.|.+.+ +..|+ ++.+.++
T Consensus 69 l~~~i~~li~~n~~-----~~~~--lri~vtrG~~~-r~~~~p~~~~~~~~~i~~~p~~~~~~~~~~gv---~~~~~~~- 136 (277)
T 3daa_A 69 FHQLLHELVEKNEL-----NTGH--IYFQVTRGTSP-RAHQFPENTVKPVIIGYTKENPRPLENLEKGV---KATFVED- 136 (277)
T ss_dssp HHHHHHHHHHHHTC-----CSEE--EEEEEESCBCS-CCSSCCSSCCCCEEEEEEEECCCCHHHHHHCE---EEEEEEC-
T ss_pred HHHHHHHHHHhcCC-----CcEE--EEEEEEecCCC-cCCCCCCCCCCcEEEEEEEECCCChHHHhCCe---EEEEecC-
Confidence 99999999999874 2344 444444 5443 3332 2 3568899999988743 33454 4444322
Q ss_pred cccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHH
Q 019544 175 HRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSI 254 (339)
Q Consensus 175 ~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~v 254 (339)
.| +.++++|++ ||+.+++|+++|+++|+||+||+| +|+|+|++++|||+++||+|+|||++.++|+||||+.+
T Consensus 137 ~r---~~~~~~Kt~-nyl~~~la~~eA~~~g~~e~l~l~---~g~v~E~~~sNif~~~~~~l~TP~~~~~iL~GitR~~v 209 (277)
T 3daa_A 137 IR---WLRCDIKSL-NLLGAVLAKQEAHEKGCYEAILHR---NNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVV 209 (277)
T ss_dssp CC---CSCTTSCBS-CCHHHHHHHHHHHHTTCSEEEEEE---TTEEEEETTBEEEEEETTEEEECCSSTTSCCCHHHHHH
T ss_pred cc---ccCCCcchh-hhHHHHHHHHHHHHCCCCEEEEEc---CCEEEEcCceEEEEEECCEEECCCCcCCCCccHHHHHH
Confidence 22 345799985 999999999999999999999996 59999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHh
Q 019544 255 IEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGI 323 (339)
Q Consensus 255 i~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~ 323 (339)
+++|+++|++|+|++++++||.+|||+|+|||+++|+||.+| |++.+. +|++||+|++|+++|.+.
T Consensus 210 l~~~~~~g~~v~e~~i~~~el~~adevf~~ns~~~i~pV~~i--d~~~~~-~g~~g~~t~~L~~~~~~~ 275 (277)
T 3daa_A 210 IACANEINMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEI--DGKLIR-DGKVGEWTRKLQKQFETK 275 (277)
T ss_dssp HHHHHHTTCCEECCCCBHHHHHTCSEEEEEETTTEEEEEEEE--TTEEST-TSSCCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCeEEEEeCCHHHHHhcCeeeeecChhhEEEEEEE--CCEECC-CCCcCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999 588873 677999999999999874
No 11
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=100.00 E-value=1.3e-56 Score=415.11 Aligned_cols=263 Identities=18% Similarity=0.192 Sum_probs=225.7
Q ss_pred ccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCHHHHH
Q 019544 24 GFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFI 103 (339)
Q Consensus 24 ~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l~ 103 (339)
+|+||+ .++++ ++.|++|+||||+|||||+| +|+ +|+|++|++||.+||+.|+|+.|+.+++.
T Consensus 2 ~~~nG~----~~~~i--------~~~d~g~~yG~gvfEtir~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~ 64 (269)
T 1i2k_A 2 FLINGH----KQESL--------AVSDRATQFGDGCFTTARVI---DGK--VSLLSAHIQRLQDACQRLMISCDFWPQLE 64 (269)
T ss_dssp EEETTE----EESCC--------CTTCHHHHHCCEEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred EEECCC----cCCcc--------CccccccccceeEEEEEEEE---CCE--EecHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 477888 24555 56999999999999999998 666 78999999999999999999987889999
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCC--CCeEEEEEEeeCCccccC-CCcceEEEeeccccccCCC
Q 019544 104 DAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHRATPG 180 (339)
Q Consensus 104 ~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~--~~~~~~i~~~p~~~~~~~-g~~~~~l~~~~~~~r~~p~ 180 (339)
+.+.++++.+. ..+||+.++++.+..|+.|+ .++++++.+.|.++++.. ..+++++.++ +.+|..++
T Consensus 65 ~~i~~~~~~~~---------~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~g~~l~~~-~~~~~~~~ 134 (269)
T 1i2k_A 65 QEMKTLAAEQQ---------NGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALS-PVRLGRNP 134 (269)
T ss_dssp HHHHHHHHHHC---------SEEEEEEEECCSCCSTTCCTTCCCCEEEEEEECCCSHHHHHHHHCEEEEEC-SCCBCCCT
T ss_pred HHHHHHHHhCC---------CeEEEEEEEcCCCCCCCCCccCCCcEEEEEEEECCCcchhhhcCCeEEEEe-ceecCCCC
Confidence 99999998642 45888888755445666554 467889999998875321 1234566554 46666666
Q ss_pred CCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHHHh
Q 019544 181 GAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASD 260 (339)
Q Consensus 181 ~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a~~ 260 (339)
.++++|+. ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+|||++.++|+||||+.|+++|++
T Consensus 135 ~~~~~Kt~-n~~~~~~a~~~A~~~G~de~l~ld~--~G~v~E~s~sNif~v~~g~l~TP~~~~~iL~GitR~~ll~~a~~ 211 (269)
T 1i2k_A 135 HLAGIKHL-NRLEQVLIRSHLEQTNADEALVLDS--EGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQ 211 (269)
T ss_dssp TTTBCCBS-CCHHHHHHHHHHTTSSCSEEEEEBT--TSBEEECSSSEEEEEETTEEEEECCSSSSBCCHHHHHHHHHHHH
T ss_pred cccCcchh-hhHHHHHHHHHHHHCCCCEEEEECC--CCcEEEcCceEEEEEECCEEECCCCccCccCCHHHHHHHHHHHH
Confidence 78899995 9999999999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHH
Q 019544 261 CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVG 322 (339)
Q Consensus 261 ~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~ 322 (339)
+|++|+|++++++||.+|||+|+|||++||+||.+| |++.+. .||+|++|+++|..
T Consensus 212 ~g~~v~e~~i~~~eL~~adevfltns~~gv~pV~~i--d~~~~~----~g~~~~~l~~~~~~ 267 (269)
T 1i2k_A 212 SSYQLVEVQASLEESLQADEMVICNALMPVMPVCAC--GDVSFS----SATLYEYLAPLCER 267 (269)
T ss_dssp SSSEEEEECCBHHHHHTCSEEEEECSSSCEEEEEEE--TTEECC----CCHHHHHHHHHHHT
T ss_pred cCCeEEEEECCHHHHhhCCEEEEcCChhheEEEEEE--CCEEec----CcHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 588762 38999999999864
No 12
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}
Probab=100.00 E-value=2e-56 Score=414.31 Aligned_cols=263 Identities=21% Similarity=0.254 Sum_probs=224.5
Q ss_pred CcccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CHH
Q 019544 22 QIGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SID 100 (339)
Q Consensus 22 ~~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~~ 100 (339)
.++|+|| .+++++ ++.|++|+||||+|||||+| +|+ +|+|++|++||.+||+.|+|+.| +.+
T Consensus 4 ~~~~~nG----~~~a~i--------~~~d~g~~yG~gvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~ 66 (272)
T 3lul_A 4 TRVIEDK----GDMTPS--------FGIDDRIFLGEGLFETIRVN---SSK--PSFAYMHWERLGNSARQLGIPFEISFD 66 (272)
T ss_dssp EEECCCC----C--CCC--------CCTTBGGGGTCEEEEEEEEE---TTE--ESSHHHHHHHHHHHHHHHTCCCCCCHH
T ss_pred eEEEECC----cccccc--------CCccchhhcceEeEEEEEEE---CCE--eCCHHHHHHHHHHHHHHhCCCCCCCHH
Confidence 3678999 667777 46999999999999999998 565 78999999999999999999998 999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCC--CCeEEEEEEeeCCccccCCCcceEEEeeccccccC
Q 019544 101 QFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRAT 178 (339)
Q Consensus 101 ~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~--~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~ 178 (339)
++.+.+.++++.|+. ...+||+.++++.+..|+.++ ..++++++ .|.++ ...++++.+ .++.|..
T Consensus 67 ~l~~~i~~l~~~~~~-------~~~~irl~v~rg~~~~g~~~~~~~~~~~~~~-~p~~~----~~~~v~l~~-~~~~r~~ 133 (272)
T 3lul_A 67 DWFEHLIQKIQKDNL-------YHGGIKAILSGGPASRGLAERGQVSQLIFQT-FNYSI----QKHPVRLIS-INWLRDK 133 (272)
T ss_dssp HHHHHHHHHHHHTTC-------SSEEEEEEEECCBCCSSTTCCCSSEEEEEEE-ECCCC----CCSCEEEEE-EEEEECT
T ss_pred HHHHHHHHHHHhcCC-------CCEEEEEEEEecCCccCcCCCCCCCcEEEEE-ECCCC----ccccEEEEE-EeEEecC
Confidence 999999999998863 356888877754445666543 23566665 54332 123466654 4688887
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHH
Q 019544 179 PGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIA 258 (339)
Q Consensus 179 p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a 258 (339)
++.++++||+ ||+.+++|+++|+++|+||+||+|+ +|+|+|++++|||+++||+|+|||++.++|+||||+.++++|
T Consensus 134 ~~~~~~~Kt~-nyl~~~la~~~A~~~G~de~L~ld~--~g~v~E~~~sNif~~~~g~l~TP~l~~~iL~GitR~~ll~la 210 (272)
T 3lul_A 134 ANPLYQLKSV-NYLEAIIAQRQAIAVGADDALFFNT--ENHVTETTCANLFLIENNILYTPRVEDGILPGITRARLISHC 210 (272)
T ss_dssp TCGGGGSCBS-CCHHHHHHHHHHHHTTCSEEEEEET--TSBEEEESSCEEEEEETTEEEECCGGGTCCCCHHHHHHHHHH
T ss_pred CCcccchhhh-ccHHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCCeEEEEEECCEEECCCCccCcCcCHHHHHHHHHH
Confidence 7788999995 9999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred HhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcC
Q 019544 259 SDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 326 (339)
Q Consensus 259 ~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~ 326 (339)
+++|++|+|++|+++||.+|||+|+|||++||+||.+| |++.++ + |++|+++|.+..+.
T Consensus 211 ~~~g~~v~e~~i~~~el~~adevf~~ns~~~v~PV~~i--d~~~~~-~------t~~l~~~y~~~~~~ 269 (272)
T 3lul_A 211 QQHKMSVQEISLTKKRIEDADAVFLTNSLQGIRRVLSL--DNIIFE-V------NHPIIDKLIFLLNQ 269 (272)
T ss_dssp HHTTCCEEECCCBHHHHHTCSEEEEEETTTEEEEEEEE--TTEECC-C------CCHHHHHHHHHHHH
T ss_pred HHcCCeEEEEECCHHHHhhCCEEEEEcCchhEEEEEEE--CCEEcc-h------HHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999 588862 1 89999999886654
No 13
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas aeruginosa} PDB: 2y4r_A* 2xpf_B*
Probab=100.00 E-value=6.9e-56 Score=414.74 Aligned_cols=265 Identities=19% Similarity=0.229 Sum_probs=226.8
Q ss_pred cccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCHHHH
Q 019544 23 IGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQF 102 (339)
Q Consensus 23 ~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l 102 (339)
.+|+||+++ +++ ++.|++|+||||+|||||+| +|+ +|+|++|++||.+||++|+|+.| .+++
T Consensus 23 ~~~~nG~~~----~~i--------~~~d~g~~yGdgvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~~-~~~l 84 (292)
T 2xpf_A 23 LDWVDGRPA----AEL--------SVRDRGLAYGDGLFETLAVR---AGT--PRLLERHLARLEEGCRRLAIPLD-TAAL 84 (292)
T ss_dssp CEEETTEEC----SEE--------ETTBHHHHHCCEEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHTTCCCC-HHHH
T ss_pred EEEECCEEE----EEE--------cccchhhhcCcEeEEEEEEE---CCE--ECCHHHHHHHHHHHHHhcCCCCC-HHHH
Confidence 578999998 445 46999999999999999997 676 68899999999999999999986 8899
Q ss_pred HHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCC--CCeEEEEEEeeCCccccC-CCcceEEEeeccccccCC
Q 019544 103 IDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHRATP 179 (339)
Q Consensus 103 ~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~--~~~~~~i~~~p~~~~~~~-g~~~~~l~~~~~~~r~~p 179 (339)
.+.+.++++... ..+||++++.+.+.+|+.|+ .+++++|.+.|.+.++.. ..+++++.++ +++|..+
T Consensus 85 ~~~i~~~v~~~~---------~~~iR~~v~rg~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~gv~l~~~-~~~~~~~ 154 (292)
T 2xpf_A 85 RQELLAFCAALG---------DGVAKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYPERHWQQGVRLFAC-RTRLAEQ 154 (292)
T ss_dssp HHHHHHHHHHHC---------SEEEEEEEECCBCCSSSSCCTTCCCEEEEEEECCCCCCHHHHHTCEEEEEC-CCCBCCC
T ss_pred HHHHHHHHHhCC---------CcEEEEEEEecCCCCCCCCCCCCCcEEEEEEEECCccchhhccCCeEEEEe-eeeccCC
Confidence 999999988632 35888888744335666554 467889999998865411 1234566555 3455555
Q ss_pred CCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHHH
Q 019544 180 GGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIAS 259 (339)
Q Consensus 180 ~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a~ 259 (339)
+.++++|++ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+|||++.++|+||||+.|+++|+
T Consensus 155 ~~~~~~Kt~-ny~~~~la~~~A~~~G~de~L~ld~--~G~V~Egs~sNif~v~~g~l~TPpl~~~iL~GitR~~vl~~a~ 231 (292)
T 2xpf_A 155 PLLAGLKHL-NRLEQVLARAEWSDAGHAEGLMLDV--HERVVEGVFSNLLLVLDGTLVAPDLRRCGVAGVMRAELLERAE 231 (292)
T ss_dssp TTTTBCCBS-CCHHHHHHHTTCCCTTCSEEEEEBT--TCCEEEESSSEEEEEETTEEEEECCSSSSBCCHHHHHHHHHHH
T ss_pred CCCCCcchh-hhHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCCeEEEEEECCEEEeCCCCCccCCCHHHHHHHHHHH
Confidence 567899985 9999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred hCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhH
Q 019544 260 DCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQ 324 (339)
Q Consensus 260 ~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~ 324 (339)
++|++|+|++|+++||.+|||+|+|||++||+||.+| |++.+. +||+|++|+++|.+..
T Consensus 232 ~~G~~v~E~~i~~~eL~~adevfltns~~gv~PV~~i--d~~~~~----~g~~t~~l~~~~~~~~ 290 (292)
T 2xpf_A 232 GIGVPLAIRDVSMAELATADEVFLCNSQFGIWPVRAL--DEHVWP----VGELTRKLQDQLRDDL 290 (292)
T ss_dssp HTTCCEEEECBCHHHHHTCSEEEEEETTTEEEEEEEE--TTEECC----CCHHHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCHHHHHhCCEEEEEcCcccEEEEEEE--CCEEeC----CCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999 588762 7899999999998743
No 14
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}
Probab=100.00 E-value=4.5e-56 Score=419.30 Aligned_cols=268 Identities=20% Similarity=0.312 Sum_probs=196.4
Q ss_pred Ccccce---eee--eehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCC
Q 019544 22 QIGFWQ---IRF--TTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPS 96 (339)
Q Consensus 22 ~~~~~~---g~~--~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~ 96 (339)
.++|+| |++ +|.++++++ +.|++|+||||||||||+| +|+ +|+|++|++||.+||+.|+|+.
T Consensus 15 ~~v~~n~~~G~~~~~~~~~a~i~--------~~Drg~~yGdgvFEtirv~---~G~--~~~l~~Hl~RL~~Sa~~L~i~~ 81 (315)
T 3sno_A 15 VILIVEPYGGSIRQQNPNLPMVF--------WDDAALTRGDGIFETLLIR---DGH--ACNVRRHGERFKASAALLGLPE 81 (315)
T ss_dssp EEEEECSTTCCEEEECTTSCCCC--------TTBTTTTTCCEEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHHTCCC
T ss_pred EEEEEECCCCeEEEeeHHHCccc--------ccchHhhcCCEeEEEEEEE---CCE--ECCHHHHHHHHHHHHHHhCCCC
Confidence 367899 999 999999995 5999999999999999998 566 7889999999999999999998
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCccc----cCCCcceEEEeec
Q 019544 97 PSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF----KEGLAPLNLYVED 172 (339)
Q Consensus 97 ~~~~~l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~----~~g~~~~~l~~~~ 172 (339)
|+.+++.+++.++++.+.. ....++.|||++++++.+..+ .|++++++.|.+.++ ..|+ ++.+.+
T Consensus 82 p~~~~l~~~i~~~v~~~~~---~n~~~~~~iRl~vtrG~~~~g-----~p~~~v~~~p~~~~~~~~~~~gv---~~~~~~ 150 (315)
T 3sno_A 82 PILEDWEKATQMGIESWYS---HPNAGEASCTWTLSRGRSSTG-----LASGWLTITPVSSDKLAQREHGV---SVMTSS 150 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHT---C--CCCEEEEEEEECCBTTTC-----CCEEEEEEEECCHHHHHHHHHCE---EEEEEE
T ss_pred cCHHHHHHHHHHHHHhhcc---cCCCCCEEEEEEEEeCCCCCC-----CCEEEEEEEECCCcchhhhcCCE---EEEEec
Confidence 8889999999999987310 001246899998875433333 367888888887543 3444 343332
Q ss_pred c-c---------------------cccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEE
Q 019544 173 E-F---------------------HRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFI 230 (339)
Q Consensus 173 ~-~---------------------~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~ 230 (339)
. + .|..|+.++++||+ ||+.+++|+++|+++|+||+||+|. +| |+|++++|||+
T Consensus 151 ~~~~~~~~~~~~~~~~r~~~s~~~~~~~p~~l~~~Kt~-nyl~~vla~~~A~~~G~de~l~l~~--~G-v~E~s~sN~f~ 226 (315)
T 3sno_A 151 RGYSIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTL-AYAANMAALRYAKSNGFDDVIFTDG--DR-VLEGATSTVVS 226 (315)
T ss_dssp C------------------------------------------------------CEEEEEEET--TE-EEEESSSEEEE
T ss_pred cccccccccccccccccccccccccccCcccccCcchh-ccHHHHHHHHHHHHcCCCEEEEEeC--CC-cEEcCCeeEEE
Confidence 1 1 12345557899996 9999999999999999999999998 79 99999999999
Q ss_pred EECCEEEccCCCCCcccChHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCch
Q 019544 231 LKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQ 310 (339)
Q Consensus 231 v~~g~l~TP~l~~~iL~GItR~~vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~g 310 (339)
++||+|+|||++.++|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||.+| |++.+ ..+
T Consensus 227 ~~~g~l~TPp~~~~iL~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfl~ns~~gv~pV~~i--d~~~~----~~~ 300 (315)
T 3sno_A 227 FKGDKIRTPSPGGDILPGTTQAALFAHATEKGWRCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRL--DGHKL----RKP 300 (315)
T ss_dssp EETTEEEEECCC------HHHHHHHHHHHHTTCEEEEECCBHHHHHHSSEEEEEETTTEEEEEEEE--SSSCC----CCC
T ss_pred EECCEEEcCCCCCCcChhHHHHHHHHHHHHcCCEEEEEECCHHHHHhCCeeEEEcCcccEEEEEEE--CCEEC----CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999 48776 268
Q ss_pred HHHHHHHHHHHHh
Q 019544 311 SVSRELYSTLVGI 323 (339)
Q Consensus 311 p~t~~L~~~~~~~ 323 (339)
|++++|+++|.+.
T Consensus 301 ~~~~~l~~~~~~~ 313 (315)
T 3sno_A 301 DNEKEIKALITKA 313 (315)
T ss_dssp TTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 9999999999874
No 15
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Probab=100.00 E-value=1.7e-54 Score=403.94 Aligned_cols=267 Identities=23% Similarity=0.280 Sum_probs=229.5
Q ss_pred cccceeeeeehhccccccccccccCCcccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCC-CHHH
Q 019544 23 IGFWQIRFTTSAKFKLELVIFFKKKNIANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQ 101 (339)
Q Consensus 23 ~~~~~g~~~~~~~~~~~i~p~~~~~~~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~-~~~~ 101 (339)
|-|.++++++.++++++ +.|++| |||+|||||+| +|+ +|+|++|++||.+||++|+|+.| +.++
T Consensus 16 ~~~~~~~~~~~~~~~i~--------~~d~g~--G~gvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~ 80 (285)
T 3csw_A 16 WWRGKFRRADEISLDFS--------LFEKSL--QGAVYETLRTY---SRA--PFAAYKHYTRLKRSADFFNLPLSLSFDE 80 (285)
T ss_dssp EETTEEEESSEEEEEHH--------HHHHHT--TCCEEEEEEEE---TTE--ETTHHHHHHHHHHHHHTTTCCCSSCHHH
T ss_pred EEccCceEcccccCEeC--------Cccccc--ceeeEEEEEEE---CCE--ECCHHHHHHHHHHHHHHhCCCCCCCHHH
Confidence 44788999999999985 489999 99999999998 565 78999999999999999999977 8999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccEEEEEEEeecCCccccCCCCCeEEEEEEeeCCccccCCCcceEEEeeccccccCCC-
Q 019544 102 FIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPG- 180 (339)
Q Consensus 102 l~~~i~~l~~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~- 180 (339)
+.+.+.++++.++ +..|||+++...+ .++++.+.|.++++. .+++++.++ +++|..++
T Consensus 81 l~~~i~~~~~~~~--------~~~~iR~~v~~~~----------~~~~i~~~p~~~~~~--~~~~~l~~~-~~~~~~~~~ 139 (285)
T 3csw_A 81 FTKVLKAGADEFK--------QEVRIKVYLFPDS----------GEVLFVFSPLNIPDL--ETGVEVKIS-NVRRIPDLS 139 (285)
T ss_dssp HHHHHHHHHTTCS--------SCEEEEEEECTTT----------CCEEEEEEECCCCCC--TTCEEEEEC-SSCCCCTTT
T ss_pred HHHHHHHHHHhhC--------CCeEEEEEEEcCC----------CEEEEEEEeCCCccc--cCCeEEEEE-eEEecCCCC
Confidence 9999999998653 2468998773111 146788888876541 234566554 34453333
Q ss_pred CCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHHHh
Q 019544 181 GAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASD 260 (339)
Q Consensus 181 ~~~~~Kt~~ny~~~~~a~~eA~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a~~ 260 (339)
.++++|+. ||+.+++|+++|++ +||+||+|+ +|+|+|++++|||+++||+|+|||++.++|+||||+.|+++|++
T Consensus 140 ~~~~~Kt~-~~l~~~la~~~A~~--~de~L~ld~--~G~V~Egs~sNif~v~~g~l~TP~l~~~iL~GitR~~ll~~a~~ 214 (285)
T 3csw_A 140 TPPALKIT-GRTDIVLARREIVD--CYDVILLGL--NGQVCEGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKS 214 (285)
T ss_dssp SCTTCCBT-TCHHHHHHHTTCSS--SSEEEEECT--TSBEEEESSSEEEEEETTEEEEECGGGTCCCCHHHHHHHHHHHH
T ss_pred CCCccchh-ccHHHHHHHHHHHh--CCeEEEECC--CCcEEEcCceEEEEEECCEEEeCCCCCCccCCHHHHHHHHHHHH
Confidence 34799997 79999999988877 999999998 89999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHHHHHHHHHHHHhHcCCCCCCCCCee
Q 019544 261 CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTV 336 (339)
Q Consensus 261 ~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~t~~L~~~~~~~~~~~~~d~~~w~~ 336 (339)
+|++|+|++++++||.+|||+|+|||++||+||.+| |++.++ +|++||+|++|+++|.++++|+. +||+.
T Consensus 215 ~g~~v~E~~i~~~dL~~adevfltns~~gv~PV~~i--d~~~~~-~g~~g~~t~~L~~~~~~~~~~~~---~~w~~ 284 (285)
T 3csw_A 215 LEIPVEERVVWVWELFEADEMFLTHTSAGVVPVRRL--NEHSFF-EEEPGPVTATLMENFEPFVLNLE---ENWVG 284 (285)
T ss_dssp TTCCEEEECCBHHHHHTCSEEEEEETTTEEEEEEEE--TTEESC-SSSCCHHHHHHHHHHHHHHHTCG---GGTTT
T ss_pred CCCeEEEEeCCHHHHhhCCEEEEecCcceEEEEEEE--CCEECC-CCCCCHHHHHHHHHHHHHHhCcC---CCCCC
Confidence 999999999999999999999999999999999999 588873 67799999999999999999987 68874
No 16
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}
Probab=100.00 E-value=5.7e-48 Score=352.76 Aligned_cols=214 Identities=20% Similarity=0.292 Sum_probs=182.4
Q ss_pred CCcccchhc-ccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccE
Q 019544 47 KNIANHTIS-TQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSL 125 (339)
Q Consensus 47 ~~~~~~~~y-G~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~l~~~~~~~~p~~~~~~~ 125 (339)
++.|++|+| |||+|||||+| +|+ +|+|++|++||.+||+.|+|+.|..+++.+.+.++++.|.. .+.+
T Consensus 11 ~~~d~g~~y~G~gvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~p~~~~l~~~i~~~~~~~~~------~~~~ 79 (246)
T 2zgi_A 11 LALPEAFLYHGASVFTTLRAE---GGR--PLWLEEHLARLRRHALALGLSYPGDEAFLEDLEALLRAFPK------APCL 79 (246)
T ss_dssp CSSCHHHHHSCCCEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHTTSCTT------CSEE
T ss_pred CCccCcccccCeeEEEEEEEE---CCE--eCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCC------CCCE
Confidence 468999999 99999999998 565 78999999999999999999987338899999999876621 2578
Q ss_pred EEEEEEeecCCccccCCCCCeEEEEEEeeCC----ccccCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHH
Q 019544 126 YIRPLLVGSGPILGLAPAPEYTFLVFASPVG----NYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRA 201 (339)
Q Consensus 126 ~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~----~~~~~g~~~~~l~~~~~~~r~~p~~~~~~Kt~~ny~~~~~a~~eA 201 (339)
+||++++++++.+++ .|.+ .++..|+ ++.+++ + |..|+ ++++|+. ||+.+++++++|
T Consensus 80 ~vR~~v~~g~~~~~~------------~p~~~~~~~~~~~g~---~l~~~~-~-r~~~~-~~~~Kt~-n~~~~~~a~~~A 140 (246)
T 2zgi_A 80 RLRFTVGEGVRLSEA------------RPYAPLPLSLYREGV---RVRLTG-Y-RVHPD-LARYKTG-NYLPYRLALEEA 140 (246)
T ss_dssp EEEEEEETTEEEEEE------------EECCCCCTHHHHHCB---CEEEEE-E-ECCTT-TTTSCBS-CCHHHHHHHHHH
T ss_pred EEEEEEECCCCccCc------------CcCCCCchhHhhcCe---EEEEec-c-cCCCC-Cccchhh-hhHHHHHHHHHH
Confidence 999988754432332 2222 2233454 454443 4 77777 8899997 999999999999
Q ss_pred HHCCCCeEEEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHHHhCCCcEEEEecChhhHhcccEE
Q 019544 202 KNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 281 (339)
Q Consensus 202 ~~~g~de~Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a~~~Gi~v~e~~i~~~eL~~adev 281 (339)
+++|+||+||+|+ +|+|+|++++|||+++||+|+|| .++|+||||+.++++|+++|++|+|++|+++||.+ |+
T Consensus 141 ~~~g~de~l~ld~--~G~v~Egs~sNif~v~~g~l~TP---~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~--ev 213 (246)
T 2zgi_A 141 RKEGAFEGLLLDA--FGHVVDGSRTSPLLFREGTLYLL---EGGLEGITREKVAEAARGLGLRVERGLFRPEGLRG--HL 213 (246)
T ss_dssp HTTTCSEEEEECT--TSCEEEESSSEEEEEETTEEEEE---CSSCCCHHHHHHHHHHHHTTCEEEEECCCGGGCCS--EE
T ss_pred HHcCCCEEEEECC--CCCEEEcCCeEEEEEECCEEECC---CCccCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHh--hH
Confidence 9999999999998 89999999999999999999999 88999999999999999999999999999999999 99
Q ss_pred EEecCccceEEEEEEE
Q 019544 282 FCTGTAVVVAPVGSIT 297 (339)
Q Consensus 282 fltnt~~~i~pV~~I~ 297 (339)
|+|||++||+||.+|+
T Consensus 214 fltns~~gi~pV~~id 229 (246)
T 2zgi_A 214 LLAGSGVGLLPVRPPP 229 (246)
T ss_dssp EEEETTTEEEEBSSCC
T ss_pred eeecChhheEEEEEEC
Confidence 9999999999999884
No 17
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Probab=100.00 E-value=1.4e-44 Score=325.10 Aligned_cols=212 Identities=17% Similarity=0.183 Sum_probs=180.9
Q ss_pred cccchhcccceeeeeEEEeccCCeeeecChhhHHHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEE
Q 019544 49 IANHTISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIR 128 (339)
Q Consensus 49 ~~~~~~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~l~~~~~~~~p~~~~~~~~iR 128 (339)
....-.-|+|+|||||+| .+|+ +|+|++|++||.+||+.|+|+. +.+++.+.+.++++ +. .+.+|||
T Consensus 8 ~~~~~~~g~glFEtir~~--~~G~--~~~l~~Hl~RL~~Sa~~l~~~~-~~~~l~~~i~~~~~-~~-------~~~~~iR 74 (221)
T 3qqm_A 8 LRDGDTADFELIETMRWQ--PGTS--FLRFDRHLARLYGSAAELGFAC-DPQRIAEVLSDALD-GA-------RTAMRTR 74 (221)
T ss_dssp CTTTTTSCCEEEEEEEEE--TTTE--ETTHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHT-TC-------CSCEEEE
T ss_pred cccCCCCCCEEEEEEEEe--cCCc--CcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-cC-------CCCEEEE
Confidence 333345689999999997 2566 6889999999999999999986 68899999999986 33 2578999
Q ss_pred EEEeecCCccccCCCCCeEEEEEEeeCCccccCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCe
Q 019544 129 PLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSD 208 (339)
Q Consensus 129 ~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de 208 (339)
+++++++ .+.+.+.|.++++.. +++++.++ +++|..++.++++||+ ||+.+.+|+++|+++|+||
T Consensus 75 ~~~~~~g-----------~~~i~~~p~~~~~~~--~~~~l~~~-~~~~~~~~~~~~~Kt~-nr~~~~~a~~~a~~~g~~e 139 (221)
T 3qqm_A 75 LALARNG-----------DATASAQPYEPLAAD--KVWILRLA-RTRLDSQNTLLRHKTS-RRQLYTHARSEYLVTQADE 139 (221)
T ss_dssp EEEETTS-----------CEEEEEEECCCCCTT--CCEEEEEC-SCCBCTTCGGGGSCBS-CCHHHHHHHHTSCTTTCSE
T ss_pred EEEEcCC-----------CEEEEEEcCCCCCCC--CCEEEEEe-eeEecCCCcchhchhc-chHHHHHHHHHHHhcCCcE
Confidence 8887532 256778888765421 34566555 4667667778999995 9999999999999999999
Q ss_pred EEEEccCCCCeEEecCceeEEEEEC-CEEEccCCCCCcccChHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCc
Q 019544 209 VLYLDSVNKKNLEEVSSCNIFILKG-NIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTA 287 (339)
Q Consensus 209 ~Llld~~~~g~v~E~s~sNif~v~~-g~l~TP~l~~~iL~GItR~~vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~ 287 (339)
+||+|+ +|+|+|++++|||++++ |+|+|||++.++|+||||+.+++++ +|+|+.|+++||.+|||+|+|||+
T Consensus 140 ~l~l~~--~g~v~E~s~sNif~~~~~~~l~TP~~~~~~L~GitR~~ll~~~-----~v~e~~i~~~~L~~adevf~~ns~ 212 (221)
T 3qqm_A 140 VLLANE--RGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEG-----RAEEAIYSYDDLKSAKALFVGNSL 212 (221)
T ss_dssp EEEEBT--TSCEEEESSCEEEEECSSSCEEEECGGGTCCCCHHHHHHHHTT-----SEEEECCCHHHHTTCSEEEEEETT
T ss_pred EEEECC--CCeEEEcCceeEEEEeCCCEEECCCCccCcchHHHHHHHHhhC-----cEEEEeCCHHHHHhCCEEEEEecc
Confidence 999998 89999999999999998 9999999999999999999999974 799999999999999999999999
Q ss_pred cceEEEEE
Q 019544 288 VVVAPVGS 295 (339)
Q Consensus 288 ~~i~pV~~ 295 (339)
+||+||+-
T Consensus 213 ~gi~pV~l 220 (221)
T 3qqm_A 213 RGLIPAKL 220 (221)
T ss_dssp TEEEEEEE
T ss_pred eeEEEEEE
Confidence 99999974
No 18
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Probab=100.00 E-value=4.5e-41 Score=296.47 Aligned_cols=189 Identities=14% Similarity=0.139 Sum_probs=154.8
Q ss_pred hcccceeeeeEEEeccCCeeeecChhhHHHHHHHhH-hcCCCC--CC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEE
Q 019544 54 ISTQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGA-ERMCMP--SP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRP 129 (339)
Q Consensus 54 ~yG~gvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa-~~l~~~--~~-~~~~l~~~i~~l~~~~~~~~p~~~~~~~~iR~ 129 (339)
+||+|+|||||+| +|+ +|+|++|++||.+|| +.++|+ .| +.+++.+.+. +++.++ .+.+|||+
T Consensus 2 ~~g~~vfEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~~l~~~~~~~~~~~~~~~~i~-~~~~~~-------~~~~~iR~ 68 (194)
T 3ceb_A 2 MWQFPLFETILIE---QGQ--AKNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHT-ALFTHR-------EGLIRCRI 68 (194)
T ss_dssp CTTCCEEEEEEEE---TTE--ECSHHHHHHHHHHHHHHHSTTCCCCCCCHHHHHHTCG-GGGSCS-------SSEEEEEE
T ss_pred CCCCeEEEEEEEE---CCE--ecCHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-HHhhCC-------CCCEEEEE
Confidence 6999999999998 666 788999999999999 999999 66 8899998888 777654 35789998
Q ss_pred EEeecCCccccCCCCCeEEEEEEeeCCccccCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeE
Q 019544 130 LLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDV 209 (339)
Q Consensus 130 ~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~~~~~Kt~~ny~~~~~a~~eA~~~g~de~ 209 (339)
+++.+. . .+...|.++ .++.... ....++.++++|+. ||+ ++++.+|+++|+||+
T Consensus 69 ~~~~g~--~----------~~~~~p~~~---~~~~~~~-------~~~~~~~~~~~Kt~-n~~--~~~~~~A~~~g~de~ 123 (194)
T 3ceb_A 69 DYNHHD--Y----------VLQCFPYQQ---KVYRTFK-------PVFCDHIDYSLKFS-DRT--LLNNLLKQKEECDEI 123 (194)
T ss_dssp EECSSC--E----------EEEEEEECC---CCCCCEE-------EEECSSCCCSSCBS-CCH--HHHHHHGGGTTSSEE
T ss_pred EEeCCc--c----------EEEEecCCC---CcEEEEE-------EecCCCcchhhccc-CHH--HHHHHHHhhCCCCEE
Confidence 876431 1 122333221 1221111 11234567899986 898 678899999999999
Q ss_pred EEEccCCCCeEEecCceeEEEEECCEEEccCCCCCcccChHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCccc
Q 019544 210 LYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 289 (339)
Q Consensus 210 Llld~~~~g~v~E~s~sNif~v~~g~l~TP~l~~~iL~GItR~~vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~ 289 (339)
||+ + +|+|+|++++|||+++||+|+||| .++|+||||+.|++ +++|+|++|+++||.+|||+|+|||++|
T Consensus 124 l~l-~--~G~v~E~s~sNif~~~~g~l~TP~--~~~L~GitR~~ll~-----~~~v~e~~i~~~eL~~adevfl~ns~~g 193 (194)
T 3ceb_A 124 MII-R--QGKVTDCSIGNLIFRQNNQWITPD--KPLLEGTQRAKLLE-----QKKIIAREIFFEDLAQYEEIRLINAMNG 193 (194)
T ss_dssp EEE-E--TTEECCCSSSEEEEEETTEEEEES--SCSSCCHHHHHHHH-----TTSSEEECCBGGGGGGCSCEEEEBTTBC
T ss_pred EEE-e--CCEEEEeccEEEEEEECCEEECCC--CCCcChHHHHHHHc-----CCCEEEecCCHHHHhhccEEEEEecccC
Confidence 999 7 799999999999999999999999 79999999999998 4799999999999999999999999988
Q ss_pred e
Q 019544 290 V 290 (339)
Q Consensus 290 i 290 (339)
|
T Consensus 194 i 194 (194)
T 3ceb_A 194 L 194 (194)
T ss_dssp C
T ss_pred C
Confidence 5
No 19
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=42.70 E-value=29 Score=26.65 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=32.5
Q ss_pred CCcccChHHHHHH-HHHHhCCCcEEE---------EecChhhHhcccEEEEecCc
Q 019544 243 GTILAGITRKSII-EIASDCGFQVEE---------RAIPVDELLEADEVFCTGTA 287 (339)
Q Consensus 243 ~~iL~GItR~~vi-~~a~~~Gi~v~e---------~~i~~~eL~~adevfltnt~ 287 (339)
.|+-...+-...| +.|+++|+++.. ..++.+|+.+||-+.+.+..
T Consensus 16 tGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 16 MGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAV 70 (111)
T ss_dssp SCHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeCC
Confidence 4444444444444 567889987765 36999999999999998874
No 20
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=38.04 E-value=18 Score=26.54 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=28.1
Q ss_pred HHHHHHhCCCcEEEEecChhhHhcccEEEEecCccceEEEEEEEeCCeEE
Q 019544 254 IIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI 303 (339)
Q Consensus 254 vi~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i 303 (339)
+.+++++.|++.+|..|.-+. ...+++.-.+...--+|+.-|. ||+.+
T Consensus 20 aK~~L~~~gi~y~~idi~~d~-~~~~~~~~~~~G~~tVP~I~i~-Dg~~l 67 (92)
T 2lqo_A 20 LKTALTANRIAYDEVDIEHNR-AAAEFVGSVNGGNRTVPTVKFA-DGSTL 67 (92)
T ss_dssp HHHHHHHTTCCCEEEETTTCH-HHHHHHHHHSSSSSCSCEEEET-TSCEE
T ss_pred HHHHHHhcCCceEEEEcCCCH-HHHHHHHHHcCCCCEeCEEEEe-CCEEE
Confidence 445677889999999986432 1222222222233456887674 67665
No 21
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=30.50 E-value=47 Score=25.22 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=46.9
Q ss_pred CCcccChHHHHHH-HHHHhCCCcEEE---------EecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHH
Q 019544 243 GTILAGITRKSII-EIASDCGFQVEE---------RAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSV 312 (339)
Q Consensus 243 ~~iL~GItR~~vi-~~a~~~Gi~v~e---------~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~ 312 (339)
.|+=...+-...| +.|+++|+.+.. ..++.+|+.+||-|.+.+.. .+- -.+ ++|+++ +...+...
T Consensus 13 tGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~-~v~-~~R--F~GK~v-~~~~v~~a 87 (106)
T 2r48_A 13 NGIAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEEEIREADAIIIAADR-SVN-KDR--FIGKKL-LSVGVQDG 87 (106)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS-CCC-CGG--GTTSBE-EEECHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC-ccC-HhH--cCCCeE-EEeCHHHH
Confidence 4555555545555 457789987654 35999999999999998874 322 222 356665 33334444
Q ss_pred HHHHHHHHHHhHcC
Q 019544 313 SRELYSTLVGIQTG 326 (339)
Q Consensus 313 t~~L~~~~~~~~~~ 326 (339)
.+.=...+.+...+
T Consensus 88 i~~p~~~l~~a~~~ 101 (106)
T 2r48_A 88 IRKPEELIQKALNG 101 (106)
T ss_dssp HHCHHHHHHHHHHC
T ss_pred HHCHHHHHHHHHhc
Confidence 44444445554433
No 22
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=28.24 E-value=47 Score=25.24 Aligned_cols=79 Identities=13% Similarity=0.232 Sum_probs=47.6
Q ss_pred CCcccChHHHHHHH-HHHhCCCcEEE---------EecChhhHhcccEEEEecCccceEEEEEEEeCCeEEeeCCCchHH
Q 019544 243 GTILAGITRKSIIE-IASDCGFQVEE---------RAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSV 312 (339)
Q Consensus 243 ~~iL~GItR~~vi~-~a~~~Gi~v~e---------~~i~~~eL~~adevfltnt~~~i~pV~~I~~~~~~i~~~~~~gp~ 312 (339)
.|+=...+-...|+ .|+++|+.+.. ..++.+|+.+||-|.+.+.. .+- -.+ ++|+++ +...+...
T Consensus 13 tGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~-~v~-~~R--F~GK~v-~~~~v~~a 87 (106)
T 2r4q_A 13 TGIAHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADK-QVE-MER--FKGKRV-LQVPVTAG 87 (106)
T ss_dssp CC--CHHHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHHHHHCSCEEEEESS-CCC-CGG--GTTSBE-EEECHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC-ccC-HhH--cCCCeE-EEeCHHHH
Confidence 56666666555554 67788987654 35999999999999998874 322 222 356665 33334444
Q ss_pred HHHHHHHHHHhHcC
Q 019544 313 SRELYSTLVGIQTG 326 (339)
Q Consensus 313 t~~L~~~~~~~~~~ 326 (339)
.+.=...+.+...+
T Consensus 88 i~~p~~~l~~a~~~ 101 (106)
T 2r4q_A 88 IRRPQELIEKAMNQ 101 (106)
T ss_dssp HHCHHHHHHHHHTT
T ss_pred HHCHHHHHHHHHhc
Confidence 44444445555444
No 23
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=25.73 E-value=83 Score=23.80 Aligned_cols=45 Identities=7% Similarity=0.045 Sum_probs=32.2
Q ss_pred CCcccChH-HHHHHHHHHhCCCcEEE---------EecChhhHhcccEEEEecCc
Q 019544 243 GTILAGIT-RKSIIEIASDCGFQVEE---------RAIPVDELLEADEVFCTGTA 287 (339)
Q Consensus 243 ~~iL~GIt-R~~vi~~a~~~Gi~v~e---------~~i~~~eL~~adevfltnt~ 287 (339)
.|+=...+ .+.+-+.|+++|++++- ..++.+|+.+||-+.+.+..
T Consensus 13 tGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~ 67 (106)
T 2m1z_A 13 TGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDT 67 (106)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESS
T ss_pred CcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEeccc
Confidence 44444555 44555678889987753 35888999999999998764
No 24
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=25.63 E-value=1e+02 Score=20.71 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=27.2
Q ss_pred CCCCeEEEEccCCCCeEEe--------cCceeEEEEECCEEEccCCCCCcccChH
Q 019544 204 RGFSDVLYLDSVNKKNLEE--------VSSCNIFILKGNIISTPATSGTILAGIT 250 (339)
Q Consensus 204 ~g~de~Llld~~~~g~v~E--------~s~sNif~v~~g~l~TP~l~~~iL~GIt 250 (339)
.|.+|+-|.-+ ||.|.. +..+|-|++.|.-=--+ + ..+||||-
T Consensus 5 ~gIeEVnmfk~--dg~vihF~nPkVqaS~~aNTfvv~G~~e~K~-l-~e~lP~Il 55 (58)
T 3mcb_B 5 SGIEEVNMFTN--QGTVIHFNNPKVQASLAANTFTITGHAETKQ-L-TEMLPSIL 55 (58)
T ss_dssp CCCCEEEEEET--TSEEEEEESCEEEEETTTTEEEEESCEEEEE-G-GGGTTGGG
T ss_pred CCeeEEEEEec--CCEEEEecCcceEEeeccceEEEecCCeeeE-H-HHHChhhh
Confidence 36677766665 676655 45689999987633322 2 45677774
No 25
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=25.32 E-value=8.5 Score=21.20 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=13.5
Q ss_pred CCCcccChHHHHHHHHH
Q 019544 242 SGTILAGITRKSIIEIA 258 (339)
Q Consensus 242 ~~~iL~GItR~~vi~~a 258 (339)
...+|.|.||+-++.+|
T Consensus 8 ~~CClsGCt~QDLL~lC 24 (26)
T 2h8b_A 8 RYCCLSGCTQQDLLTLC 24 (26)
T ss_dssp HHHHHTCBCHHHHHTTC
T ss_pred HHHHhcCCcHHHHHhhC
Confidence 34689999999988764
No 26
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=21.93 E-value=96 Score=21.37 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=26.0
Q ss_pred CCCeEEEEccCCCCeEEec--------CceeEEEEECCEEEccCCCCCcccChH
Q 019544 205 GFSDVLYLDSVNKKNLEEV--------SSCNIFILKGNIISTPATSGTILAGIT 250 (339)
Q Consensus 205 g~de~Llld~~~~g~v~E~--------s~sNif~v~~g~l~TP~l~~~iL~GIt 250 (339)
|.+|+-|.-+ ||.|... ..+|-|++.|.-=--+- ..+||||-
T Consensus 6 gIeEVnmfk~--dg~vihF~nPkVqaS~~aNT~vv~G~~e~K~l--~ellP~Il 55 (66)
T 3lkx_A 6 GIEEVNMFTN--QGTVIHFNNPKVQASLAANTFTITGHAETKQL--TEMLPSIL 55 (66)
T ss_dssp CEEEEEEEET--TSEEEEEESCEEEEECC-CEEEEESCEEEEEG--GGGTTGGG
T ss_pred CeeEEEEEec--CCEEEEecCcceEEeeccCeeEecCCCEEeEH--HHHChhhh
Confidence 5566666655 5666554 56899999886433332 55788874
No 27
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=21.66 E-value=1.5e+02 Score=22.09 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=30.8
Q ss_pred cChHHHHHHHHHH---hCCCcEEEEecC---hhhHhcccEEEEecCcc
Q 019544 247 AGITRKSIIEIAS---DCGFQVEERAIP---VDELLEADEVFCTGTAV 288 (339)
Q Consensus 247 ~GItR~~vi~~a~---~~Gi~v~e~~i~---~~eL~~adevfltnt~~ 288 (339)
-|-|++..-.+++ +.|.+++.-.+. ++++.++|-+++.+...
T Consensus 10 tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y 57 (137)
T 2fz5_A 10 TGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAM 57 (137)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCB
T ss_pred CChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhcCCEEEEEcccc
Confidence 4888887766665 357878766654 67888999988877664
Done!