RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 019544
(339 letters)
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 502 bits (1295), Expect = e-179
Identities = 207/284 (72%), Positives = 249/284 (87%), Gaps = 1/284 (0%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
QGLFEG+KAYRKEDG ++LFRP++NAIR++ GAERMCMP+P+++QF++AVK+T LANKRW
Sbjct: 120 QGLFEGLKAYRKEDGNILLFRPEENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKRW 179
Query: 117 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHR 176
VPPPGKGSLYIRPLL+GSG +LGLAPAPEYTFL++ SPVGNYFKEG+AP+NL VE+EFHR
Sbjct: 180 VPPPGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGVAPINLIVENEFHR 239
Query: 177 ATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNII 236
ATPGG GGVK I NYA VLKA S AK +G+SDVLYLD V+KK LEEVSSCNIFI+K N+I
Sbjct: 240 ATPGGTGGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVI 299
Query: 237 STPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 296
STPA GTIL GITRKSII++A GFQVEER + VDELLEADEVFCTGTAVVV+PVGSI
Sbjct: 300 STPAIKGTILPGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVGSI 359
Query: 297 TYRGKRIEF-KTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 339
TY+GKR+ + + G +VS++LY+ L +Q GLI+DN WTVE++
Sbjct: 360 TYKGKRVSYGEGGFGTVSQQLYTVLTSLQMGLIEDNMNWTVELS 403
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2.
Length = 388
Score = 456 bits (1173), Expect = e-161
Identities = 215/283 (75%), Positives = 257/283 (90%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
Q ++EG KAYRKE+G+L+LFRPD NAIR++ GAERM MPSPS+DQF++AVKQTALANKRW
Sbjct: 106 QAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKRW 165
Query: 117 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHR 176
VPP GKG+LYIRPLL+GSGPILGL PAPEYTF+V+ASPVGNYFKEG+A LNLYVE+E+ R
Sbjct: 166 VPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVR 225
Query: 177 ATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNII 236
A PGGAGGVK+I+NYAPVLKA+SRAK+RGFSDVLYLDSV KK LEE SSCN+F++KG I
Sbjct: 226 AAPGGAGGVKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTI 285
Query: 237 STPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 296
STPAT+GTIL GITRKS++EIASD G+QV E+A+ VDE+++ADEVFCTGTAVVVAPVG+I
Sbjct: 286 STPATNGTILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTI 345
Query: 297 TYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 339
TY+ KR+E+KTG +SV ++L S LVGIQTGLI+DNKGW +IN
Sbjct: 346 TYQEKRVEYKTGDESVCQKLRSVLVGIQTGLIEDNKGWVTDIN 388
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase;
Provisional.
Length = 355
Score = 442 bits (1139), Expect = e-156
Identities = 181/283 (63%), Positives = 237/283 (83%), Gaps = 1/283 (0%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
QGLFEG+KAYR EDG++ LFRPDQNA+R+QTGA+R+CM PS++QF++AVKQT LANK+W
Sbjct: 70 QGLFEGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKW 129
Query: 117 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHR 176
VPPPGKG+LYIRPLL+GSG +LG+APAPEYTFL++ASPVGNY K + LNL V+ + R
Sbjct: 130 VPPPGKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHKAS-SGLNLKVDHKHRR 188
Query: 177 ATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNII 236
A GG GGVK+ +NY+PV+K++ AK+ GFSDVL+LD+ KN+EE+S+CNIFILKGNI+
Sbjct: 189 AHSGGTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIV 248
Query: 237 STPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 296
STP TSGTIL G+TRKSI E+A D G+QVEER + VDELLEA+EVFCTGTAVVV V ++
Sbjct: 249 STPPTSGTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETV 308
Query: 297 TYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 339
T+ K+++++TG +++S +L+ L IQ G+++D KGW VEI+
Sbjct: 309 TFHDKKVKYRTGEEALSTKLHLILTNIQMGVVEDKKGWMVEID 351
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase.
Length = 384
Score = 399 bits (1026), Expect = e-139
Identities = 195/282 (69%), Positives = 231/282 (81%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
QGL EGMKAYR EDG+++LFRP+ NA+R++ GAERMCM SPS+ QFI+ VKQT LAN+RW
Sbjct: 102 QGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRW 161
Query: 117 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHR 176
VPPPGKGSLY+RPLL GSG LG+A APEYTFLVF SPV NYFKEG A LNLYVE+ R
Sbjct: 162 VPPPGKGSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPR 221
Query: 177 ATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNII 236
A GG GGVKAISNY PVL+ + RAK+RGFSDVLYLD+ KN+EEVS+ NIF++KGNII
Sbjct: 222 AYLGGTGGVKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNII 281
Query: 237 STPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 296
TPATSGTIL GITRKSIIEIA D G++VEER +PV+EL EA+EVFCTGTA VA VGSI
Sbjct: 282 VTPATSGTILGGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVGSI 341
Query: 297 TYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEI 338
T++ R E+K G V+++L S L+GIQTG I+D K W ++I
Sbjct: 342 TFKNTRTEYKVGDGIVTQQLRSILLGIQTGSIQDTKDWVLQI 383
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 392 bits (1009), Expect = e-137
Identities = 136/291 (46%), Positives = 181/291 (62%), Gaps = 10/291 (3%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
Q +FEG+KAYR +DG +VLFRPD NA RLQ A+R+ MP + F++AVKQ A++ W
Sbjct: 66 QEIFEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDW 125
Query: 117 VPPPGKG-SLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFH 175
VPP G+G SLY+RP ++ + P LG+ PA EY F V ASPVG YFK G+ P++++V DE+
Sbjct: 126 VPPYGEGASLYLRPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYD 185
Query: 176 RATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF-ILKGN 234
RA PGG G K NYA L A + AK +G VLYLD+V +EEV N F I K
Sbjct: 186 RAAPGGTGAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDG 245
Query: 235 IISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEA------DEVFCTGTAV 288
+ TP SG+IL GITR S++++A D G VEER + +DE E F GTA
Sbjct: 246 TV-TPPLSGSILPGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAA 304
Query: 289 VVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGIQTGLIKDNKGWTVEI 338
V+ P+G I Y+ K G V+++LY L GIQ G ++D GW V++
Sbjct: 305 VITPIGGIKYKDKEFVIGDGEVGPVTQKLYDELTGIQFGDVEDPHGWIVKV 355
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 352 bits (906), Expect = e-122
Identities = 135/270 (50%), Positives = 168/270 (62%), Gaps = 3/270 (1%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
Q +FEG+KAYR DG++VLFRPD+NA RL A R+ +P S+++FIDA+K+ + W
Sbjct: 13 QAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDADW 72
Query: 117 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHR 176
VP G SLYIRP + G+ P LG++PA EY F VFASPVG YFK G ++ V F R
Sbjct: 73 VPYGGGASLYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEKGVSALVS-SFRR 131
Query: 177 ATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNII 236
A PGG G KA NYA L A A +G+ L+LD + EV + NIF +K +
Sbjct: 132 AAPGGPGAAKAGGNYAASLLAQKEAAEKGYDQALWLDG-AHGYVAEVGTMNIFFVKDGEL 190
Query: 237 STPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 296
TP G+IL GITR SI+E+A D G +VEER I DEL EADEVF TGTA VV PVG I
Sbjct: 191 ITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEI 250
Query: 297 TYRGKRIEFKTGAQSVSRELYSTLVGIQTG 326
YRGK V+++LY L IQ G
Sbjct: 251 DYRGKEPGE-GEVGPVTKKLYDLLTDIQYG 279
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 318 bits (816), Expect = e-108
Identities = 142/289 (49%), Positives = 183/289 (63%), Gaps = 7/289 (2%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
Q FEG+KAYR DG +VLFRPD NA RL+ A R+ MP + F++A++Q ANK W
Sbjct: 25 QECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKANKDW 84
Query: 117 VPPPGKG-SLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFH 175
VPP G G SLY+RP ++G+ P LG+ PAPEY F VFASPVG YFK GLAP++++V E+
Sbjct: 85 VPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFASPVGAYFKGGLAPVSIFVTTEYD 144
Query: 176 RATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF-ILKGN 234
RA PGG G VK NYA L A ++A +G V+YLD V +EEV + N F I
Sbjct: 145 RAAPGGTGAVKVGGNYAASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDG 204
Query: 235 IISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADE----VFCTGTAVVV 290
+ TP SG+IL GITR S++++A D G +VEER I +DEL E VF GTA V+
Sbjct: 205 ELVTPPLSGSILPGITRDSLLQLAKDLGMEVEERRIDIDELKAFVEAGEEVFACGTAAVI 264
Query: 291 APVGSITYRGKRIEFKTGAQS-VSRELYSTLVGIQTGLIKDNKGWTVEI 338
PVG I + GK + F +G V++ LY L IQ G +D GW VE+
Sbjct: 265 TPVGEIQHGGKEVVFASGQPGEVTKALYDELTDIQYGDFEDPYGWIVEV 313
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 250 bits (641), Expect = 2e-82
Identities = 108/267 (40%), Positives = 141/267 (52%), Gaps = 21/267 (7%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKR 115
G+FEG++A + LFR D++ RL A+R+ +P P ++ +A+K+ AN
Sbjct: 8 DGVFEGLRAGK-----GRLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANN- 61
Query: 116 WVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYFKEGLAPLNLYVEDE 173
SLYIRPLL LG+AP P E TF+VFASPVG Y K G + L +
Sbjct: 62 ------GASLYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPD 115
Query: 174 FHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKG 233
RA PGG G K + A A G + L LD + E S+ N+FI+K
Sbjct: 116 RRRAAPGGTGDAKT-GGNLNSVLAKQEAAEAGADEALLLDD--NGYVTEGSASNVFIVKD 172
Query: 234 NIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPV 293
+ TP G IL GITR S+IE+A + G +VEER I +DEL ADEVF TGTA V PV
Sbjct: 173 GELVTPPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPV 232
Query: 294 GSITYRGKRIEFKTGAQSVSRELYSTL 320
I RG + K G V+R+L L
Sbjct: 233 TEIDGRGI-GDGKPG--PVTRKLRELL 256
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 220 bits (562), Expect = 2e-70
Identities = 105/275 (38%), Positives = 145/275 (52%), Gaps = 22/275 (8%)
Query: 57 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 116
G+FE ++AY + LFR D++ RL+ A+R+ +P P ++ I+ + Q LA
Sbjct: 29 DGVFETLRAYNGK-----LFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLLLAKNNL 83
Query: 117 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLA--PLNLYVEDEF 174
VP LYIRPL+ G G LG+ A E T +V ASPVG Y K G + L +
Sbjct: 84 VPG-----LYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKGGRLEKGVVLVISSPV 138
Query: 175 HRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN 234
R P G G K NY + A AK G + L LD + E + N+F +KG+
Sbjct: 139 -RRAPPGPGAAKKTGNYLSSVLAKREAKAAGADEALLLDE--DGYVTEGAGSNVFFVKGD 195
Query: 235 -IISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPV 293
++ TP SG IL GITR S++E+A + G VEER I +++L +ADEVF T TA V PV
Sbjct: 196 GVLVTPPLSGGILPGITRDSLLELAKELGLTVEERPITLEDLKQADEVFLTNTAAGVTPV 255
Query: 294 GSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLI 328
G I R + G V+++L L IQ G I
Sbjct: 256 GLIDGR----VGQPG--PVTKKLRELLTDIQYGEI 284
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 137 bits (348), Expect = 2e-38
Identities = 91/287 (31%), Positives = 138/287 (48%), Gaps = 28/287 (9%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRW 116
G+FEG++AY + G +FR ++ RL A+ M P S ++ ++A ++T N
Sbjct: 26 GVFEGIRAYDTDKG-PAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLRKN--- 81
Query: 117 VPPPGKGSLYIRPLL-VGSGPILGLAPAPEYT--FLVFASPVGNYFKEGLAPLNLYVE-D 172
S YIRPL+ G G LGL P Y ++ A P G Y E + +
Sbjct: 82 ----NLRSAYIRPLVFRGDGD-LGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVS 136
Query: 173 EFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL 231
+ R P KA NY L A S A+ G+ + + LD + + E S NIFI+
Sbjct: 137 SWRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDV--EGYVAEGSGENIFIV 194
Query: 232 KGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVA 291
K ++ TP + +IL GITR ++I +A + G +V E+ I +EL ADE F TGTA +
Sbjct: 195 KDGVLFTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADEAFFTGTAAEIT 254
Query: 292 PVGSITYR----GKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGW 334
P+ + R G+R V+++L + TG +D GW
Sbjct: 255 PIREVDGRKIGNGRR-------GPVTKKLQEAFFDLVTGGTEDYWGW 294
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 137 bits (347), Expect = 5e-38
Identities = 95/295 (32%), Positives = 136/295 (46%), Gaps = 45/295 (15%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRW 116
G+FEG++AY G + FR ++ RL A+ + M P S+D+ ++A ++ N
Sbjct: 35 GVFEGIRAYDTPKGPAI-FRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVVRKNNL- 92
Query: 117 VPPPGKGSLYIRPLL-VGSGPILGLAPAPEYT---FLVFASPVGNYF-KEGLAP-LNLYV 170
S YIRPL+ VG GL P + A P G Y +E L + + V
Sbjct: 93 ------KSAYIRPLVFVGDE---GLGVRPHGLPTDVAIAAWPWGAYLGEEALEKGIRVKV 143
Query: 171 EDEFHRA----TPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSC 226
+ R P A KA NY + A + A+ G+ + L LD VS
Sbjct: 144 S-SWTRHAPNSIPTRA---KASGNYLNSILAKTEARRNGYDEALLLDVEGY-----VSEG 194
Query: 227 ---NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFC 283
NIFI++ ++ TP + +IL GITR ++I +A D G +V ER I DEL ADEVF
Sbjct: 195 SGENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEVIERRITRDELYIADEVFF 254
Query: 284 TGTAVVVAPVGSITYR----GKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGW 334
TGTA V P+ + R GKR G ++ +L S I G + W
Sbjct: 255 TGTAAEVTPIREVDGRQIGNGKR-----G--PITEKLQSAYFDIVRGRTEKYAHW 302
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 131 bits (331), Expect = 1e-36
Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 13/223 (5%)
Query: 76 FRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSG 135
F D++ RL+ A+ + SI+ +++ AN GS +R L+
Sbjct: 1 FLLDEHLERLRRSAKALIGLPLSIEDLRKIIQELLEAN------GPAGSGRLRILVSRGD 54
Query: 136 PILGLAPAPEYTFLVFASPVGNYFK-EGLAPLN-LYVEDEFHRATPGGAGGVKAISNYAP 193
GL+P ++ + L L + G K +
Sbjct: 55 GGRGLSPPEGAIPIIVSLIALASSAPPRLLITVKLRLSSYPVPRPLAGH---KTTNYLDN 111
Query: 194 VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKS 253
VL A+ A+ GF D L LD N+ E S+ NIFI+KG + TP IL GITR++
Sbjct: 112 VLAALRAAERAGFDDALLLDE--DGNVTEGSTSNIFIVKGGTLYTPPLESGILPGITRQA 169
Query: 254 IIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 296
++++A + G +VEER + + +L EADE F T + V PV SI
Sbjct: 170 LLDLAKELGIEVEERPLTLADLQEADEAFLTNSLRGVTPVTSI 212
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 116 bits (293), Expect = 1e-30
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 45/254 (17%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRW 116
G++E ++ Y +G F D++ RL A+ + + P + ++ + +++ N+
Sbjct: 26 GVYEVIRVY---NG--KPFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVAKNEG- 79
Query: 117 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHR 176
G+G +YI+ + G GP P +V + L P L
Sbjct: 80 ----GEGDVYIQ-VTRGVGPRGHDFPKCVKPTVVIITQPLP-----LPPAELL------- 122
Query: 177 ATPGGAGGVKAIS--------------NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEE 222
GV+ I+ N + A AK G + + LD+ + E
Sbjct: 123 -----EKGVRVITVPDIRWLRCDIKSLNLLNNVLAKQEAKEAGADEAILLDADG--LVTE 175
Query: 223 VSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVF 282
SS N+FI+K ++ TP IL GITR ++IE+A + G VEER ++EL ADEVF
Sbjct: 176 GSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADEVF 235
Query: 283 CTGTAVVVAPVGSI 296
T T V PV I
Sbjct: 236 LTSTTAEVMPVVEI 249
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 108 bits (271), Expect = 1e-27
Identities = 75/247 (30%), Positives = 122/247 (49%), Gaps = 32/247 (12%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWV 117
G+FE M+A DG+L L D + RL+ A R+ +P P + + A++ AN
Sbjct: 9 GVFETMRAL---DGRLFLL--DAHLARLERSARRLGIPEPDLPRLRAALESLLAAN---- 59
Query: 118 PPPGKGSLYIRPLLV-GSGPILGLAPA--PEYTFLVFASPVGNYFKE-----GLAPLNLY 169
+G IR +L G G G AP+ P V P+ +++ P+ L
Sbjct: 60 -DIDEG--RIRLILSRGPGG-RGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCPVRL- 114
Query: 170 VEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF 229
G+K + NY + A A++RG + L+LD+ + E ++ N+F
Sbjct: 115 -------GEQPLLAGLKHL-NYLENVLAKREARDRGADEALFLDTDG--RVIEGTASNLF 164
Query: 230 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 289
+K + TP+ LAGITR+ +IE+A+ G+ V+ER + +++LL ADE F T + +
Sbjct: 165 FVKDGELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSLLG 224
Query: 290 VAPVGSI 296
VAPV +I
Sbjct: 225 VAPVTAI 231
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 106 bits (267), Expect = 1e-26
Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 17/181 (9%)
Query: 120 PGKGSLYIRPLLVG-SGPILGLAPAPEYT---FLVFASPVGNY--FKEGLAPLNLYVEDE 173
+LYIRP+ G G+AP PE T + +P+ F L+P
Sbjct: 87 DPDTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEPTGFSLTLSP-------- 138
Query: 174 FHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK 232
F R T A KA Y +A+ A++RGF + L LD + N+ E ++ N+F++K
Sbjct: 139 FRRPTLEMAPTDAKAGCLYPNNARALREARSRGFDNALVLDMLG--NVAETATSNVFMVK 196
Query: 233 GNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAP 292
++ TP +GT L GITR+ +I + + G V E + ++ LEADEVF TG V P
Sbjct: 197 DGVVFTPVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVP 256
Query: 293 V 293
V
Sbjct: 257 V 257
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 97.7 bits (244), Expect = 2e-23
Identities = 87/276 (31%), Positives = 131/276 (47%), Gaps = 40/276 (14%)
Query: 60 FEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVP 118
FEG +AY G++ F+ +++ RL+ AE + P S+ + IDA K+ LA
Sbjct: 39 FEGERAY---GGKI--FKLREHSERLRRSAELLDFEIPYSVAE-IDAAKKETLAANGLT- 91
Query: 119 PPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFAS-PVGNYF----KEGLAPLNLYVEDE 173
Y+RP+ ++G++ L A+ +YF K L++ +
Sbjct: 92 -----DAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRLDI---AK 143
Query: 174 FHRATPGGA-GGVKAISNYAPVLKAIS--RAKNRGFSDVLYLDSVNKKNLEEVSSCNIFI 230
+ R P A KA Y ++ IS A+ +G++D L LD + + E + NIF
Sbjct: 144 WRRPDPETAPSAAKAAGLY--MICTISKHAAEAKGYADALMLDY--RGYVAEATGANIFF 199
Query: 231 LKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVV 290
+K +I TP T L GITR+++IE+A G +V ER I +EL E F TGTA V
Sbjct: 200 VKDGVIHTP-TPDCFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECFLTGTAAEV 258
Query: 291 APVGSI-TYRGKRIEFKTGAQSVSREL---YSTLVG 322
PV I YR F GA ++R+L Y LV
Sbjct: 259 TPVSEIGEYR-----FTPGA--ITRDLMDDYEALVR 287
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 94.9 bits (237), Expect = 2e-22
Identities = 80/268 (29%), Positives = 114/268 (42%), Gaps = 75/268 (27%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRW 116
G+FEG++AY +G +FR ++ RL A+ + + P S ++ + V +T N
Sbjct: 31 GVFEGIRAY---NG--RVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLETLRKN--- 82
Query: 117 VPPPGKGSLYIRPLL---VGSGPILGLAP--APEYTFLVFASPVGNYFKEGLAPLNLYVE 171
YIR ++ VG LGL P P+ T + A P+G Y E LY
Sbjct: 83 ----NLRDAYIRLVVSRGVGD---LGLDPRKCPKPTVVCIAEPIGLYPGE------LY-- 127
Query: 172 DEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVL--------YLDSV------NK 217
G LK I+ + R D L YL+++ N
Sbjct: 128 ------EKG--------------LKVITVSTRRNRPDALSPQVKSLNYLNNILAKIEANL 167
Query: 218 KNLEE---------VSSC---NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQV 265
++E V+ NIFI+K + TP T L GITR ++IEIA + G V
Sbjct: 168 AGVDEAIMLNDEGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIPV 227
Query: 266 EERAIPVDELLEADEVFCTGTAVVVAPV 293
E + +L ADEVF TGTA V PV
Sbjct: 228 REELFTLHDLYTADEVFLTGTAAEVIPV 255
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 82.3 bits (204), Expect = 6e-18
Identities = 69/252 (27%), Positives = 107/252 (42%), Gaps = 38/252 (15%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWV 117
G+FE + DG+ + RL A + +P P +D++ AV LA + W
Sbjct: 40 GVFETLLVR---DGRPCNLEA--HLERLARSAALLDLPEPDLDRWRRAV---ELAIEEWR 91
Query: 118 PPPGKGSL---YIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK----EGLAPLNL-- 168
P + +L Y R G P T V SPV EG++ + L
Sbjct: 92 APEDEAALRLVYSRGRESGGAP----------TAWVTVSPVPERVARARREGVSVITLDR 141
Query: 169 -YVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS---VNKKNLEEVS 224
Y D RA P G K +S YA + A+ A RG DV++ + V LE +
Sbjct: 142 GYPSDAAERA-PWLLAGAKTLS-YAVNMAALRYAARRGADDVIFTSTDGYV----LEGPT 195
Query: 225 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 284
S + I + + TP IL G T+ ++ E+A + G+ E RA+ +L AD V+
Sbjct: 196 S-TVVIATDDRLLTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRPADLFAADGVWLV 254
Query: 285 GTAVVVAPVGSI 296
+ + A V ++
Sbjct: 255 SSVRLAARVHTL 266
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 73.8 bits (182), Expect = 4e-15
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 203 NRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCG 262
N + L LD+ N+ E ++ NIF KGN + TP S +AG+ R+ ++ + G
Sbjct: 154 NSEADEALVLDTDG--NVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPALG 211
Query: 263 FQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 296
+++EE ++ELL ADEVF T + + V PV +I
Sbjct: 212 YEIEEVKAGLEELLSADEVFITNSLMGVVPVNAI 245
Score = 30.2 bits (69), Expect = 1.2
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 111
G F K +G++ L D + RLQ A R+ +P P D + + Q A
Sbjct: 22 GCFTTAKVR---NGKIELL--DLHLERLQDAAARLGIPLPDWDALREEMAQLAA 70
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 72.6 bits (179), Expect = 1e-14
Identities = 74/298 (24%), Positives = 111/298 (37%), Gaps = 80/298 (26%)
Query: 55 STQ---GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 111
STQ G F R DGQ+ L ++ RLQ ER+ +P Q +KQ A
Sbjct: 18 STQYGDGCFTTA---RVRDGQVSLL--SRHLQRLQDACERLAIPLDDWAQLEQEMKQLAA 72
Query: 112 ANKRWVPPPGKGSLYI---RPLLVGSG-----------P--ILGLAPAPEYTFL------ 149
G L + R GSG P IL ++P P +
Sbjct: 73 EL-------ENGVLKVIISR----GSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGI 121
Query: 150 -VFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSD 208
+ P + G PL G+K ++ VL + + +
Sbjct: 122 TLALCPT----RLGRNPL---------------LAGIKHLNRLEQVL-IRAELEQTEADE 161
Query: 209 VLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEER 268
L LDS + E + N+F KG ++ TP +AG+ R+ I+E+ + G+ V E
Sbjct: 162 ALVLDSEG--WVIECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQSGYPVVEV 219
Query: 269 AIPVDELLEADEVFCTGTAVVVAPV---GSITYRGKRIEFKTGAQSVSRELYSTLVGI 323
++ELL+ADEVF + + V PV G +Y S L L +
Sbjct: 220 DASLEELLQADEVFICNSLMPVWPVRAIGETSYS-------------SGTLTRYLQPL 264
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 69.6 bits (171), Expect = 2e-13
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 222 EVSSCNIFILK--GNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEAD 279
E +S N +I+ G +++ PA + IL GITR ++I++A + G +VEER + E A
Sbjct: 181 EGASSNAWIVTKDGKLVTRPADNF-ILPGITRHTLIDLAKELGLEVEERPFTLQEAYAAR 239
Query: 280 EVFCTGTAVVVAPVGSI 296
E F T + V PV I
Sbjct: 240 EAFITAASSFVFPVVQI 256
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 69.0 bits (169), Expect = 2e-13
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 222 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 281
E SS N++ +K ++ T + IL GITR I+ A + G V+E +ELL ADEV
Sbjct: 176 EGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNADEV 235
Query: 282 FCTGTAVVVAPVGSI 296
F + T + PV I
Sbjct: 236 FVSSTTAEITPVIEI 250
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 67.7 bits (165), Expect = 8e-13
Identities = 70/251 (27%), Positives = 115/251 (45%), Gaps = 29/251 (11%)
Query: 58 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRW 116
G+FEG+++Y +F ++ RL A+ + + P ++D+ +AV QT N
Sbjct: 32 GVFEGIRSYGGN-----VFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTLQKN--- 83
Query: 117 VPPPGKGSLYIRPLLVGSGP-ILGLAP--APEYTFLVFASPVG----NYFKEGLAPLNLY 169
YIR L+V G LGL P + + ++ A + ++ GL+ +++
Sbjct: 84 ----EYADAYIR-LIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVVSVA 138
Query: 170 VEDEFHRATPGGAG-GVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNI 228
R TP +K+++ VL I A G + L L+ + + E S N+
Sbjct: 139 SR----RNTPDALDPRIKSMNYLNNVLVKI-EAAQAGVLEALMLN--QQGYVCEGSGDNV 191
Query: 229 FILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAV 288
F++K + TP + L GITR S+IE+ EER ++ ADEVF TGTA
Sbjct: 192 FVVKDGKVLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVFLTGTAA 251
Query: 289 VVAPVGSITYR 299
+ PV + R
Sbjct: 252 ELIPVVKVDSR 262
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 67.3 bits (165), Expect = 1e-12
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 227 NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGT 286
N+F +KG+I+ TP+ IL GITR +I++ + G +V+E +ELL ADEVF T +
Sbjct: 182 NLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNS 241
Query: 287 AVVVAP---VGSITYRGKR 302
+ P + + GK
Sbjct: 242 IQEIVPLTRIEERDFPGKV 260
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 50.8 bits (121), Expect = 4e-07
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 184 GVKAIS--------------NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF 229
GV+AIS N P + A ++A+ +G + L+ V + E S N F
Sbjct: 134 GVRAISEPDTRWLRCDIKSLNLLPNILAATKAERKGCKEALF---VRNGTVTEGSHSNFF 190
Query: 230 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 289
++K + T + IL GI R+ ++ +A V+E V ++ +ADE F TGT +
Sbjct: 191 LIKNGTLYTHPANHLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVYQADECFFTGTTIE 250
Query: 290 VAPV 293
+ P+
Sbjct: 251 ILPM 254
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
protein.
Length = 336
Score = 38.1 bits (89), Expect = 0.004
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 190 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNI-FILKGNIISTPATSGTILAG 248
NY P + A+ RG ++LD + + E + N+ F+ + P IL+G
Sbjct: 188 NYLPNALSQMEAEERGAFAGIWLD--EEGFVAEGPNMNVAFLTNDGELVLPPFD-KILSG 244
Query: 249 ITRKSIIEIA-----SDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPV 293
T + ++E+A V++R I V+E ADE+ G+ V V P+
Sbjct: 245 CTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPI 294
>gnl|CDD|169002 PRK07546, PRK07546, hypothetical protein; Provisional.
Length = 209
Score = 32.3 bits (74), Expect = 0.21
Identities = 42/212 (19%), Positives = 75/212 (35%), Gaps = 36/212 (16%)
Query: 75 LFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 134
R D++ RL+ A + P AV+ P L +R L
Sbjct: 18 FPRLDRHLARLERSARALGFPCD-----PAAVRAKLAEAVAGAQGP----LRLRLTLARD 68
Query: 135 GPI-LGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAP 193
G + + AP P P ++ +A L D R K + A
Sbjct: 69 GRLTVETAPLP-------PLPPDTVWRVAIARTRLDSADPLLR--------YKT-TRRAA 112
Query: 194 VLKAISRAKNRGFSDVLYLDSVNKK-NLEEVSSCNIFI-LKGNIISTPATSGTILAGITR 251
A + +V+ L N++ + E + N+F+ G +++TP S +L G+ R
Sbjct: 113 YDAARAELPPAEADEVILL---NERGEVCEGTITNVFLDRGGGMLTTPPLSCGLLPGVLR 169
Query: 252 KSIIEIASDCGFQVEERAIPVDELLEADEVFC 283
++ + E + VD+L A ++
Sbjct: 170 AELL-----DAGRAREAVLTVDDLKSARAIWV 196
>gnl|CDD|100037 cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup
1 of unknown function. The family of PurM related
proteins includes Hydrogen expression/formation protein
HypE, AIR synthases, FGAM synthase and Selenophosphate
synthetase (SelD). They all contain two conserved
domains and seem to dimerize. The N-terminal domain
forms the dimer interface and is a putative ATP binding
domain.
Length = 298
Score = 32.2 bits (74), Expect = 0.37
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 240 ATSGTILAGITRKSIIEIASDCGFQVEERAIPVDE 274
AT G IL + + AS G ++E+ IP+ +
Sbjct: 216 ATEGGILGALWE---VAEASGVGLRIEKDKIPIRQ 247
>gnl|CDD|226222 COG3698, COG3698, Predicted periplasmic protein [Function unknown].
Length = 250
Score = 29.3 bits (66), Expect = 2.6
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 138 LGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGV 185
L A + L+FA G Y APL LYVE+ + AGG
Sbjct: 69 LLAALNKQGQSLLFAMNGGMY-HPDYAPLGLYVENGKEQVPLNTAGGE 115
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 27.6 bits (62), Expect = 5.0
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 22/122 (18%)
Query: 204 RGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATS-GTILAG---ITRKSIIEIAS 259
+ + D L L + K + +F+ K +++ P L G I RK+
Sbjct: 23 QSYLDPLLLSLLLPKRGRPL----VFVAKDELLNLPLLGWLMRLLGCIFIDRKNA----- 73
Query: 260 DCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYST 319
++ A ++ L+E + G V++ P G+ + G+ + FK GA ++RE
Sbjct: 74 ------KDAANTLEYLVE---LLREGELVLIFPEGTRSRGGELLPFKKGAFRLAREAGVP 124
Query: 320 LV 321
+V
Sbjct: 125 IV 126
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 27.3 bits (61), Expect = 5.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 266 EERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLV 321
L EA E+ G +++ P G+ + GK + FK GA ++ E +V
Sbjct: 56 SNGRKARAALREAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIV 111
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 28.5 bits (64), Expect = 6.3
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 11/43 (25%)
Query: 284 TGTAVVVAPVGSITYRG--------KRIE--FKTGAQSVSREL 316
T TAVVVA GS TY G R + F G SVS L
Sbjct: 253 TATAVVVA-TGSRTYFGSLAKSIVGTRAQTAFDRGVNSVSWLL 294
>gnl|CDD|205395 pfam13214, DUF4022, Protein of unknown function (DUF4022). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 73 and 85 amino acids
in length.
Length = 83
Score = 26.4 bits (58), Expect = 6.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 130 LLVGSGPILGLAPAPEYTFL 149
LL+G+ ILGL AP Y F+
Sbjct: 59 LLLGTASILGLLAAPAYFFI 78
>gnl|CDD|100033 cd02197, HypE, HypE (Hydrogenase expression/formation protein).
HypE is involved in Ni-Fe hydrogenase biosynthesis.
HypE dehydrates its own carbamoyl moiety in an
ATP-dependent process to yield the enzyme thiocyanate.
The N-terminal domain of HypE is related to the
ATP-binding domains of the AIR synthases,
selenophosphate synthetase (SelD), and FGAM synthase and
is thought to bind ATP.
Length = 293
Score = 27.8 bits (63), Expect = 8.7
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 256 EIA--SDCGFQVEERAIPVD-------ELLEAD--EVFCTGTAVVVAP 292
EIA S G ++EE AIPV E+L D + G V + P
Sbjct: 220 EIARASGVGIEIEEEAIPVREEVRGACEMLGLDPLYLANEGKFVAIVP 267
>gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Reviewed.
Length = 2890
Score = 28.0 bits (62), Expect = 9.2
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 213 DSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSI--IEIASDCGFQVEER-- 268
D V+KK +E ++ + LKG PA + +L GITR +I I S FQ +
Sbjct: 2788 DLVSKKLFKEENA-RVIALKGE----PAIAEPVLLGITRAAIGSDSIISAASFQETTKVL 2842
Query: 269 -----AIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFK 306
A+ D L + E G + PVG+ Y+ K+I +
Sbjct: 2843 TEASIAMKKDFLEDLKENVVLGRMI---PVGTGMYKNKKIVLR 2882
>gnl|CDD|221146 pfam11597, Med13_N, Mediator complex subunit 13 N-terminal.
Mediator is a large complex of up to 33 proteins that is
conserved from plants through fungi to humans - the
number and representation of individual subunits varying
with species. It is arranged into four different
sections, a core, a head, a tail and a kinase-activity
part, and the number of subunits within each of these is
what varies with species. Overall, Mediator regulates
the transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Med13 is part of the
ancillary kinase module, together with Med12, CDK8 and
CycC, which in yeast is implicated in transcriptional
repression, though most of this activity is likely
attributable to the CDK8 kinase. The large Med12 and
Med13 proteins are required for specific developmental
processes in Drosophila, zebrafish, and Caenorhabditis
elegans but their biochemical functions are not
understood.
Length = 370
Score = 27.9 bits (62), Expect = 9.3
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 268 RAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 326
+ + + + E GT V AP GSI + + G Q S + + V +
Sbjct: 238 VLVDLSDSPQMIEDLPPGTDVWPAPSGSI---ARLVSTVDGTQLASDDPSPSSVKLTPP 293
>gnl|CDD|212579 cd11706, DHR2_DOCK2, Dock Homology Region 2, a GEF domain, of Class
A Dedicator of Cytokinesis 2. Dock2 is a hematopoietic
cell-specific, class A DOCK and is an atypical guanine
nucleotide exchange factor (GEF) that lacks the
conventional Dbl homology (DH) domain. As a GEF, it
activates small GTPases by exchanging bound GDP for free
GTP. It plays an important role in lymphocyte migration
and activation, T-cell differentiation, neutrophil
chemotaxis, and type I interferon induction. DOCK
proteins are divided into four classes (A-D) based on
sequence similarity and domain architecture; class A
includes Dock1, 2 and 5. All DOCKs contain two homology
domains: the DHR-1 (Dock homology region-1), also called
CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and
DHR-2 (also called CZH2 or Docker). The DHR-1 domain
binds phosphatidylinositol-3,4,5-triphosphate. This
alignment model represents the DHR-2 domain of Dock2,
which contains the catalytic GEF activity for Rac and/or
Cdc42. Class A DOCKs, like Dock2, are specific GEFs for
Rac and they contain an SH3 domain at the N-terminal
region and a PxxP motif at the C-terminus.
Length = 421
Score = 27.6 bits (61), Expect = 9.8
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 59 LFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQ 101
++ G + R+ED Q+ L NA +L T + P I
Sbjct: 163 IYRGKEYERREDFQMQLMSQFPNAEKLNTTS----APGDDIKN 201
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.401
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,545,785
Number of extensions: 1741428
Number of successful extensions: 1476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1436
Number of HSP's successfully gapped: 50
Length of query: 339
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 241
Effective length of database: 6,590,910
Effective search space: 1588409310
Effective search space used: 1588409310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)