Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>019545
MITMSVAAATPLPCFKNHSILSTKSFNSKPPRRHFDNATISSQSLPPVQKQRRIHLTRTV
VCHAARRKPTVAADASKASAEGNDNVRRVLQIVLWAAEAVYILWLFLLPYAPGDPVWAIS
SETVNSLVGLSLNFFFVLPLMNSVGIRLIDAPVLHPMSEGLFNFVIGWTFMFAPLLFTDC
KRDRYKGSLDVLWGFQMFLTNTFLIPYMAIRLNEACSEDTPRDHSQLASVMTNGAPIVGL
IGGAICLLSTLWALYGRMDGDFGGITERWEFLVSYLGSERLAYAFIWDIFLYIIFQAWLI
GDNLQNVQLSKVGTVNYLRFVPVVGLTAYLLFLNLDEEQ

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  019545
        (339 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006376 - symbol:AT3G25805 "AT3G25805" speci...  1056  9.2e-107  1


>TAIR|locus:505006376 [details] [associations]
            symbol:AT3G25805 "AT3G25805" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA]
            EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AF370240 EMBL:AY062962
            IPI:IPI00538553 RefSeq:NP_566779.1 UniGene:At.6414 STRING:Q94K74
            PaxDb:Q94K74 PRIDE:Q94K74 EnsemblPlants:AT3G25805.1 GeneID:822172
            KEGG:ath:AT3G25805 TAIR:At3g25805 eggNOG:NOG85447
            HOGENOM:HOG000030386 InParanoid:Q94K74 OMA:GDPVWAI PhylomeDB:Q94K74
            ProtClustDB:CLSN2688776 ArrayExpress:Q94K74 Genevestigator:Q94K74
            Uniprot:Q94K74
        Length = 335

 Score = 1056 (376.8 bits), Expect = 9.2e-107, P = 9.2e-107
 Identities = 210/339 (61%), Positives = 251/339 (74%)

Query:     6 VAAATPLPCFKNHSILSTKSFNSKPPRRHF-DNATISS--QSLPPVQKQRRIHL-TR--T 59
             +   +P   +  H + S++   S   RRHF  +  IS+  +   P Q   R  L TR  +
Sbjct:     2 ILITSPTLTYLRHRLHSSQ-IKSPQIRRHFLRSREISTVDRCYNPWQSTNRFKLRTRDSS 60

Query:    60 VVCHAARRKPTVAADASKASAEGNDNVRRVLQIVLWAAEAVYILWLFLLPYAPGDPVWAI 119
              +C  ARRKP  A        E +D++RR+++ +LW +EAVYILWLFLLPYAPGDPVWAI
Sbjct:    61 FLC-CARRKPETAT----VEVE-DDSIRRIVRYLLWTSEAVYILWLFLLPYAPGDPVWAI 114

Query:   120 SSETVNSLVGLSLNFFFVLPLMNSVGIRLIDAPVLHPMSEGLFNFVIGWTFMFAPLLFTD 179
             SSETVNSL+GLSLNFFFVLPL N+ GI  + APVLHPM+EGLFNFVI WT MFAPLL+TD
Sbjct:   115 SSETVNSLLGLSLNFFFVLPLTNAAGIHFLQAPVLHPMAEGLFNFVIAWTLMFAPLLYTD 174

Query:   180 CKRDRYKGSLDVLWGFQMFLTNTFLIPYMAIRLNEACSEDTPRDHSQLASVMTNGAPIVG 239
              KR+RYK SLDVLW   MFLTNTFLIPYMA+RLN+A  +D P   SQL  VMT GAPIVG
Sbjct:   175 RKRNRYKSSLDVLWSLMMFLTNTFLIPYMALRLNDADPDDKPSKRSQLGEVMTKGAPIVG 234

Query:   240 LIGGAICLLSTLWALYGRMDGDFGGITERWEFLVSYLGSERLAYAFIWDIFLYIIFQAWL 299
             L G  +CL+S LW+LYGR DGDFGGI +RW++L+ YLGSERLAYAFIWDI LY IFQ WL
Sbjct:   235 LTGATVCLISALWSLYGRADGDFGGIMDRWQYLIGYLGSERLAYAFIWDICLYTIFQPWL 294

Query:   300 IGDNLQNVQLSKVGTVNYLRFVPVVGLTAYLLFLNLDEE 338
             IG+NLQNV+ +K+  V YLRFVPV GL AY LFLNL++E
Sbjct:   295 IGENLQNVKKNKIELVKYLRFVPVFGLLAYHLFLNLEDE 333


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.139   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      339       339   0.00094  116 3  11 22  0.45    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  239 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.98u 0.11s 27.09t   Elapsed:  00:00:02
  Total cpu time:  26.98u 0.11s 27.09t   Elapsed:  00:00:02
  Start:  Mon May 20 17:53:13 2013   End:  Mon May 20 17:53:15 2013

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