BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019545
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase
Length = 775
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 68 KPTVAADASKASAEGNDNVRRVLQIVLWAAEAVYILWLFLLPYA------PGDPVWAISS 121
K V AD + E +N+ RV + + A+A Y L LP G P+W +S
Sbjct: 287 KEKVYADEIAKAWESGENLERVAKYSMEDAKATYELGKEFLPMEIQLSRLVGQPLWDVSR 346
Query: 122 ETVNSLV 128
+ +LV
Sbjct: 347 SSTGNLV 353
>pdb|4AHC|A Chain A, Crystal Structure Of An Evolved Replicating Dna Polymerase
pdb|4AHC|B Chain B, Crystal Structure Of An Evolved Replicating Dna Polymerase
pdb|4AIL|C Chain C, Crystal Structure Of An Evolved Replicating Dna Polymerase
Length = 775
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 68 KPTVAADASKASAEGNDNVRRVLQIVLWAAEAVYILWLFLLPYA------PGDPVWAISS 121
K V AD + E +N+ RV + + A+A Y L LP G P+W +S
Sbjct: 287 KEKVYADEIAKAWESGENLERVAKYSMEDAKATYELGKEFLPMEIQLSRLIGQPLWDVSR 346
Query: 122 ETVNSLV 128
+ +LV
Sbjct: 347 SSTGNLV 353
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 116 VWAISSETVNSLVGLSLNFFFVLP-LMNSVGIRLIDAPVLHPMSEGLF-NFVIGWTFMFA 173
V+ I+++ + +++G + + P ++ +G+ ++ + GL +I + +F
Sbjct: 85 VFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNL--TAGHGLLVELIITFQLVFT 142
Query: 174 PLLFTDCKRDRYKGSLDVLWGFQMFLTNTFLIPYMAIRLNEA 215
D KR GS+ + GF + + + F I Y +N A
Sbjct: 143 IFASCDSKRTDVTGSIALAIGFSVAIGHLFAINYTGASMNPA 184
>pdb|1F9D|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellotetraose
pdb|1FBW|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellohexaose
pdb|2QNO|A Chain A, Crystal Structure Of The Mutant E55q Of The Cellulase
Cel48f In Complex With A Thio-Oligosaccharide
Length = 629
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 235 APIVGLIGGAICLLSTLW--ALYGRMDGDFGGITERWEFLVSYL 276
AP G + + + +W A++GR GDF G + W YL
Sbjct: 45 APDYGHVTTSQAMSYYMWLEAMHGRFSGDFTGFDKSWSVTEQYL 88
>pdb|1F9O|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum With The Thiooligosaccharide Inhibitor
Pips- Ig3
pdb|1FAE|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellobiose
pdb|1FBO|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellobiitol
pdb|1G9G|A Chain A, Xtal-Structure Of The Free Native Cellulase Cel48f
pdb|1FCE|A Chain A, Processive Endocellulase Celf Of Clostridium
Cellulolyticum
Length = 629
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 235 APIVGLIGGAICLLSTLW--ALYGRMDGDFGGITERWEFLVSYL 276
AP G + + + +W A++GR GDF G + W YL
Sbjct: 45 APDYGHVTTSEAMSYYMWLEAMHGRFSGDFTGFDKSWSVTEQYL 88
>pdb|1G9J|A Chain A, X-Tal Structure Of The Mutant E44q Of The Cellulase Cel48f
In Complex With A Thiooligosaccharide
Length = 629
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 235 APIVGLIGGAICLLSTLW--ALYGRMDGDFGGITERWEFLVSYL 276
AP G + + + +W A++GR GDF G + W YL
Sbjct: 45 APDYGHVTTSEAMSYYMWLEAMHGRFSGDFTGFDKSWSVTEQYL 88
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 116 VWAISSETVNSLVGLSLNFFFVLP-LMNSVGIRLIDAPVL--HPMSEGLFNFVIGWTFMF 172
V+ I+++ + +++G + + P ++ +G+ + + H + L +I + +F
Sbjct: 94 VFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGL---LVELIITFQLVF 150
Query: 173 APLLFTDCKRDRYKGSLDVLWGFQMFLTNTFLIPYMAIRLNEACS 217
D KR GS+ + GF + + + F I Y +N A S
Sbjct: 151 TIFASCDSKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARS 195
>pdb|3A2F|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna
PolymerasePCNA Monomer Mutant Complex
Length = 775
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 68 KPTVAADASKASAEGNDNVRRVLQIVLWAAEAVYILWLFLLPYA------PGDPVWAISS 121
K V AD + E +N+ RV + A+A Y L LP G P+W +S
Sbjct: 287 KEKVYADEIAKAWESGENLERVAKYSXEDAKATYELGKEFLPXEIQLSRLVGQPLWDVSR 346
Query: 122 ETVNSLV 128
+ +LV
Sbjct: 347 SSTGNLV 353
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 116 VWAISSETVNSLVGLSLNFFFVLP-LMNSVGIRLIDAPVL--HPMSEGLFNFVIGWTFMF 172
V+ I+++ + +++G + + P ++ +G+ + + H + L +I + +F
Sbjct: 133 VFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGL---LVELIITFQLVF 189
Query: 173 APLLFTDCKRDRYKGSLDVLWGFQMFLTNTFLIPYMAIRLNEACS 217
D KR GS+ + GF + + + F I Y +N A S
Sbjct: 190 TIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARS 234
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 116 VWAISSETVNSLVGLSLNFFFVLP-LMNSVGIRLIDAPVL--HPMSEGLFNFVIGWTFMF 172
V+ I+++ + +++G + + P ++ +G+ + + H + L +I + +F
Sbjct: 94 VFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGL---LVELIITFQLVF 150
Query: 173 APLLFTDCKRDRYKGSLDVLWGFQMFLTNTFLIPYMAIRLNEACS 217
D KR GS+ + GF + + + F I Y +N A S
Sbjct: 151 TIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARS 195
>pdb|1FGG|A Chain A, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I)
Complexed With Gal-Gal-Xyl, Udp, And Mn2+
pdb|1FGG|B Chain B, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I)
Complexed With Gal-Gal-Xyl, Udp, And Mn2+
pdb|1KWS|A Chain A, Crystal Structure Of Beta1,3-glucuronyltransferase I In
Complex With The Active Udp-glcua Donor
pdb|1KWS|B Chain B, Crystal Structure Of Beta1,3-glucuronyltransferase I In
Complex With The Active Udp-glcua Donor
Length = 261
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 25 SFNSKPPRRHFDNATISSQSLPPVQKQRRIHLTRTVVCHAARRKPTVAADAS-KASAEGN 83
F+S PR H +++ +S P + R + TR +V H KP + + + G+
Sbjct: 196 QFDSTAPRGHLESSLLSHLVDPKDLEPRAANCTRVLVWHTRTEKPKMKQEEQLQRQGRGS 255
Query: 84 D 84
D
Sbjct: 256 D 256
>pdb|3CU0|A Chain A, Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In
Complex With Udp And Gal-Gal(6-So4)-Xyl(2-Po4)-O-Ser
pdb|3CU0|B Chain B, Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In
Complex With Udp And Gal-Gal(6-So4)-Xyl(2-Po4)-O-Ser
Length = 281
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 25 SFNSKPPRRHFDNATISSQSLPPVQKQRRIHLTRTVVCHAARRKPTVAADAS-KASAEGN 83
F+S PR H +++ +S P + R + TR +V H KP + + + G+
Sbjct: 216 QFDSTAPRGHLESSLLSHLVDPKDLEPRAANCTRVLVWHTRTEKPKMKQEEQLQRQGRGS 275
Query: 84 D 84
D
Sbjct: 276 D 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,768,811
Number of Sequences: 62578
Number of extensions: 388594
Number of successful extensions: 766
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 14
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)