BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019545
         (339 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9ULD2|MTUS1_HUMAN Microtubule-associated tumor suppressor 1 OS=Homo sapiens GN=MTUS1
           PE=1 SV=2
          Length = 1270

 Score = 35.0 bits (79), Expect = 0.90,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 10/76 (13%)

Query: 18  HSILSTKSFNS----------KPPRRHFDNATISSQSLPPVQKQRRIHLTRTVVCHAARR 67
           HS LST S NS          KPP+  F N +  S  L P+  +  +HL +T     +R+
Sbjct: 807 HSELSTYSNNSGNAAVIKYEEKPPKPAFQNGSSGSFYLKPLVSRAHVHLMKTPPKGPSRK 866

Query: 68  KPTVAADASKASAEGN 83
               A +A + S + N
Sbjct: 867 NLFTALNAVEKSRQKN 882


>sp|Q5R9I1|MTUS1_PONAB Microtubule-associated tumor suppressor 1 homolog OS=Pongo abelii
           GN=MTUS1 PE=2 SV=1
          Length = 1270

 Score = 34.7 bits (78), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 10/76 (13%)

Query: 18  HSILSTKSFNS----------KPPRRHFDNATISSQSLPPVQKQRRIHLTRTVVCHAARR 67
           HS LST S NS          KPP+  F N +  S  L P+  +  +HL +T     +R+
Sbjct: 807 HSELSTYSNNSGNATVIKYEEKPPKPAFQNGSSGSFYLKPLVSRAHVHLLKTPPKGPSRK 866

Query: 68  KPTVAADASKASAEGN 83
               A +A + S + N
Sbjct: 867 NLFTALNAVEKSRQKN 882


>sp|P15896|ORF5_SPV1R Uncharacterized protein ORF5 OS=Spiroplasma virus SpV1-R8A2 B
           GN=ORF5 PE=3 SV=2
          Length = 134

 Score = 32.7 bits (73), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 189 LDVLWGFQMFLTNT----FLIPYMAIRLNEACSEDTPRDHSQLASVMTNGAPIVGLIGGA 244
            DV+W  ++ +TNT    FLI +M I+L+      T   ++ L S + NG   V      
Sbjct: 28  FDVIWNTKLPMTNTSIAYFLIFFMVIKLSIYAIHGTSTQYNNLGSTVNNGVSQV------ 81

Query: 245 ICLLSTLWALYGRMDGDFGGITERWEFLVS 274
               ST+  +     G    I ER +F ++
Sbjct: 82  --YSSTVRGVSDTKQGMQKHIKERKQFKIN 109


>sp|Q88416|ORF5_SPV1C Uncharacterized protein ORF5 OS=Spiroplasma virus SpV1-C74 GN=ORF5
           PE=3 SV=1
          Length = 135

 Score = 31.6 bits (70), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 14/75 (18%)

Query: 168 WTFMFAPLLFTDCKRDRYKGSLDVLWGFQMFLTNT----FLIPYMAIRLNEACSEDTPRD 223
           ++F+F   LF            DV+W  ++ +TNT    FL+ +M I+L+      T   
Sbjct: 21  FSFVFDIFLFI----------FDVIWNTKLPMTNTSIAYFLVFFMVIKLSIYAIHGTSTQ 70

Query: 224 HSQLASVMTNGAPIV 238
           ++ L S + NG   V
Sbjct: 71  YNNLGSTVNNGVSQV 85


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.140    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,906,629
Number of Sequences: 539616
Number of extensions: 5132695
Number of successful extensions: 12411
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12408
Number of HSP's gapped (non-prelim): 7
length of query: 339
length of database: 191,569,459
effective HSP length: 118
effective length of query: 221
effective length of database: 127,894,771
effective search space: 28264744391
effective search space used: 28264744391
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)