Query 019545
Match_columns 339
No_of_seqs 67 out of 69
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 02:37:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11196 DUF2834: Protein of u 82.9 2.3 4.9E-05 35.5 4.6 59 272-335 31-96 (97)
2 PRK10263 DNA translocase FtsK; 74.5 27 0.00059 41.1 11.2 28 92-119 24-53 (1355)
3 PF13491 DUF4117: Domain of un 62.5 59 0.0013 27.9 8.5 20 99-119 16-35 (171)
4 PRK13108 prolipoprotein diacyl 54.4 30 0.00064 36.3 6.1 85 154-258 193-280 (460)
5 PF13396 PLDc_N: Phospholipase 52.3 2.8 6E-05 29.6 -1.2 19 315-333 26-44 (46)
6 PF06609 TRI12: Fungal trichot 37.8 77 0.0017 34.2 6.3 50 236-298 240-290 (599)
7 PF11381 DUF3185: Protein of u 30.3 91 0.002 24.3 4.0 32 236-272 1-32 (59)
8 PRK12437 prolipoprotein diacyl 29.8 1.8E+02 0.0039 27.9 6.8 91 153-264 174-266 (269)
9 PF11196 DUF2834: Protein of u 27.6 95 0.0021 25.9 4.0 54 155-213 38-96 (97)
10 PF04088 Peroxin-13_N: Peroxin 26.0 58 0.0013 29.6 2.6 21 192-212 136-156 (158)
11 COG0163 UbiX 3-polyprenyl-4-hy 25.8 35 0.00077 32.2 1.2 31 111-146 148-178 (191)
12 PF10251 PEN-2: Presenilin enh 25.6 65 0.0014 27.3 2.6 13 197-209 13-25 (94)
13 PF01102 Glycophorin_A: Glycop 24.8 73 0.0016 27.9 2.9 22 236-257 69-90 (122)
14 PF01790 LGT: Prolipoprotein d 22.3 2E+02 0.0044 27.0 5.6 81 153-252 169-254 (256)
No 1
>PF11196 DUF2834: Protein of unknown function (DUF2834); InterPro: IPR021362 This is a bacterial family of uncharacterised proteins.
Probab=82.95 E-value=2.3 Score=35.45 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=43.6
Q ss_pred HHHHhcccchhhHHHHHHHHHHHHHHHHhhcccccccccccccccceeeccc-------hHHHHHHHhcCC
Q 019545 272 LVSYLGSERLAYAFIWDIFLYIIFQAWLIGDNLQNVQLSKVGTVNYLRFVPV-------VGLTAYLLFLNL 335 (339)
Q Consensus 272 F~~~~~s~R~~~af~vD~~L~~l~qp~Llgddl~rr~~~~~~~~~~lrfVP~-------~Gl~~YL~~l~~ 335 (339)
|.+++..|..+..+++|+..-++..-..+=-|.+|.|.++ |++ .+|. +|+-.||.+||.
T Consensus 31 f~~~~~~n~as~~~~~Dl~i~ai~~~vwi~~E~rr~~ir~----~w~-~i~~t~~vgvs~glPLyL~lRer 96 (97)
T PF11196_consen 31 FFADAFANPASSFLSWDLLIAAIALLVWIVVEARRLGIRH----WWL-YIVLTFFVGVSFGLPLYLYLRER 96 (97)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----HHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 7788999999999999999998888877777766665432 222 3332 467788887653
No 2
>PRK10263 DNA translocase FtsK; Provisional
Probab=74.45 E-value=27 Score=41.08 Aligned_cols=28 Identities=32% Similarity=0.830 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHH--HCCCCCCCCCccc
Q 019545 92 IVLWAAEAVYILWLF--LLPYAPGDPVWAI 119 (339)
Q Consensus 92 i~LW~lw~~Yi~ylf--Llp~APgdP~wai 119 (339)
-+++++.+++.+|++ |+.|-|.||-|.-
T Consensus 24 E~~gIlLlllAlfL~lALiSYsPsDPSwS~ 53 (1355)
T PRK10263 24 EALLILIVLFAVWLMAALLSFNPSDPSWSQ 53 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccCCcccc
Confidence 334444445444444 4458999999863
No 3
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=62.54 E-value=59 Score=27.94 Aligned_cols=20 Identities=35% Similarity=0.994 Sum_probs=12.4
Q ss_pred HHHHHHHHHCCCCCCCCCccc
Q 019545 99 AVYILWLFLLPYAPGDPVWAI 119 (339)
Q Consensus 99 ~~Yi~ylfLlp~APgdP~wai 119 (339)
+.|....+. .|-|.||.|..
T Consensus 16 ~~fl~~al~-sy~~~D~~~~~ 35 (171)
T PF13491_consen 16 ALFLLLALI-SYSPSDPSWNS 35 (171)
T ss_pred HHHHHHHHH-HcCCCCCcccc
Confidence 444444333 37999999854
No 4
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=54.38 E-value=30 Score=36.26 Aligned_cols=85 Identities=14% Similarity=0.058 Sum_probs=47.1
Q ss_pred cChh--HHHHHHHHHHHHHHHhhhhcccccCCCcCCCchhHHHHHHHHHhhhhhhhhhhhcccCCCCCCCccccc-cccc
Q 019545 154 LHPM--SEGLFNFVIGWTFMFAPLLFTDCKRDRYKGSLDVLWGFQMFLTNTFLIPYMAIRLNEACSEDTPRDHSQ-LASV 230 (339)
Q Consensus 154 vhPv--~eaLFNf~~aW~lmfapLLf~D~r~qk~~~~l~~lW~~amFlTnaFLLPYmAlR~~~p~~~~~~~k~~~-lg~~ 230 (339)
+||. -|+++|+++...+++. .+|.++-++ .+...||+=|=+.|.- .+-.-...... .++
T Consensus 193 ~HPTqLYEsi~~lllf~iLl~l-----~rk~~~~~G----------~lf~lYli~Ygi~RF~--iEflR~d~~~~~~gl- 254 (460)
T PRK13108 193 VQPTFLYELIWNVLVFVALIYI-----DRRFIIGHG----------RLFGFYVAFYCAGRFC--VELLRDDPATLIAGI- 254 (460)
T ss_pred cCchHHHHHHHHHHHHHHHHHH-----HhccCCCCc----------hHHHHHHHHHHHHHHH--hhhhccCchhhhcCc-
Confidence 6985 6899999988777762 233333334 2233455556555541 11110010001 111
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHhcC
Q 019545 231 MTNGAPIVGLIGGAICLLSTLWALYGRM 258 (339)
Q Consensus 231 ~~~~Sr~~G~vg~lvgi~sI~wal~~R~ 258 (339)
+-+-++.+++.++|++.++|.-.+|.
T Consensus 255 --~~~Q~lSl~~il~gl~~~~~~~~~~~ 280 (460)
T PRK13108 255 --RINSFTSTFVFIGAVVYIILAPKGRE 280 (460)
T ss_pred --cHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 23678899999999887777665554
No 5
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=52.27 E-value=2.8 Score=29.55 Aligned_cols=19 Identities=32% Similarity=0.686 Sum_probs=14.9
Q ss_pred ccceeeccchHHHHHHHhc
Q 019545 315 VNYLRFVPVVGLTAYLLFL 333 (339)
Q Consensus 315 ~~~lrfVP~~Gl~~YL~~l 333 (339)
.-.+-++|++|+++|+...
T Consensus 26 ~~~i~~~P~iG~i~Yl~~g 44 (46)
T PF13396_consen 26 LIVILFFPIIGPILYLIFG 44 (46)
T ss_pred HHHHHHHHHHHHhheEEEe
Confidence 3345679999999999864
No 6
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=37.80 E-value=77 Score=34.24 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH-HHhcccchhhHHHHHHHHHHHHHHH
Q 019545 236 PIVGLIGGAICLLSTLWALYGRMDGDFGGITERWEFLV-SYLGSERLAYAFIWDIFLYIIFQAW 298 (339)
Q Consensus 236 r~~G~vg~lvgi~sI~wal~~R~dgd~Gdla~R~~YF~-~~~~s~R~~~af~vD~~L~~l~qp~ 298 (339)
-++|.++.+.|+.+++-++. ||+ -. ..|+|.|++--+++=++++.+|.-|
T Consensus 240 D~IG~~L~~~Gl~LfLlgl~------wgG-------~~~~~W~Sa~VIa~lviG~~~Lv~F~~w 290 (599)
T PF06609_consen 240 DWIGIFLFIAGLALFLLGLS------WGG-------YPYYPWKSAHVIAPLVIGFVLLVAFVVW 290 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHh------ccC-------CCCCCCCCccchhhHHHHHHHHHHHHHh
Confidence 68999999999999999984 566 32 4699999999999999988887665
No 7
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=30.35 E-value=91 Score=24.28 Aligned_cols=32 Identities=6% Similarity=-0.015 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Q 019545 236 PIVGLIGGAICLLSTLWALYGRMDGDFGGITERWEFL 272 (339)
Q Consensus 236 r~~G~vg~lvgi~sI~wal~~R~dgd~Gdla~R~~YF 272 (339)
|++|++++.+|+++++|+.-. ...+.++.+=+
T Consensus 1 kiigi~Llv~GivLl~~G~~~-----~~S~~s~~s~~ 32 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYFGYQA-----SDSLGSQVSRA 32 (59)
T ss_pred CeeeehHHHHHHHHHHhhhhh-----hhhHHHHHHHH
Confidence 678999999999999999966 34455554433
No 8
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=29.82 E-value=1.8e+02 Score=27.90 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=48.7
Q ss_pred ccChh--HHHHHHHHHHHHHHHhhhhcccccCCCcCCCchhHHHHHHHHHhhhhhhhhhhhcccCCCCCCCccccccccc
Q 019545 153 VLHPM--SEGLFNFVIGWTFMFAPLLFTDCKRDRYKGSLDVLWGFQMFLTNTFLIPYMAIRLNEACSEDTPRDHSQLASV 230 (339)
Q Consensus 153 vvhPv--~eaLFNf~~aW~lmfapLLf~D~r~qk~~~~l~~lW~~amFlTnaFLLPYmAlR~~~p~~~~~~~k~~~lg~~ 230 (339)
.+||. -|+++|++..-.+.+ .+|.++-++ .....|++=|-..|. -.+-.-.+.....+.+
T Consensus 174 ~~hPtqLYE~~~~l~~f~~l~~------~~~~~~~~G----------~~f~~yl~~Y~~~Rf--~iEf~R~~~~~~~~~l 235 (269)
T PRK12437 174 YYHPTFLYESLWNFLGFILLLW------LRKKPLRRG----------EVFALYLIWYSIGRF--FIEGLRTDSLMLFGWL 235 (269)
T ss_pred ccCchHHHHHHHHHHHHHHHHH------HHhccCCCc----------hhHHHHHHHHHHHHH--hhhhhccCchhhhcCh
Confidence 36985 789999665433322 133333445 234456667777775 2211111111110111
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 019545 231 MTNGAPIVGLIGGAICLLSTLWALYGRMDGDFGG 264 (339)
Q Consensus 231 ~~~~Sr~~G~vg~lvgi~sI~wal~~R~dgd~Gd 264 (339)
+-+-++++...++|++.+.+.- .|.+.||+.
T Consensus 236 --s~~Q~~sl~~i~~g~~~~~~~~-~~~~~~~~~ 266 (269)
T PRK12437 236 --RIAQVISIPLIIIGIILIIYRR-KKGIADWRY 266 (269)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHH-hcCCCCccc
Confidence 2478888888888887665544 345567765
No 9
>PF11196 DUF2834: Protein of unknown function (DUF2834); InterPro: IPR021362 This is a bacterial family of uncharacterised proteins.
Probab=27.57 E-value=95 Score=25.89 Aligned_cols=54 Identities=20% Similarity=0.360 Sum_probs=35.0
Q ss_pred ChhHHHHH-HHHHHHHHHHhhhhcccccCCCcCCCchhHHHHH--HHHHh-hh-hhhhhhhhcc
Q 019545 155 HPMSEGLF-NFVIGWTFMFAPLLFTDCKRDRYKGSLDVLWGFQ--MFLTN-TF-LIPYMAIRLN 213 (339)
Q Consensus 155 hPv~eaLF-Nf~~aW~lmfapLLf~D~r~qk~~~~l~~lW~~a--mFlTn-aF-LLPYmAlR~~ 213 (339)
||.+-++- -+.+++... .=.++.|+|+.+.+.. |... .|.++ .| +.=||.+|++
T Consensus 38 n~as~~~~~Dl~i~ai~~-~vwi~~E~rr~~ir~~----w~~i~~t~~vgvs~glPLyL~lRer 96 (97)
T PF11196_consen 38 NPASSFLSWDLLIAAIAL-LVWIVVEARRLGIRHW----WLYIVLTFFVGVSFGLPLYLYLRER 96 (97)
T ss_pred CHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccchH----HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66665543 344444443 3667899988888884 5422 66666 45 6669999984
No 10
>PF04088 Peroxin-13_N: Peroxin 13, N-terminal region; InterPro: IPR007223 Peroxin-13 is a component of the peroxisomal translocation machinery with Peroxin-14 and Peroxin-17. Both termini of Peroxin-13 are oriented to the cytosol. It is required for peroxisomal association of peroxin-14 []. The proteins also contain an SH3 domain (IPR001452 from INTERPRO).; GO: 0016560 protein import into peroxisome matrix, docking, 0005777 peroxisome, 0016021 integral to membrane
Probab=26.01 E-value=58 Score=29.61 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhc
Q 019545 192 LWGFQMFLTNTFLIPYMAIRL 212 (339)
Q Consensus 192 lW~~amFlTnaFLLPYmAlR~ 212 (339)
.||+.+|+.-+|=+||+..+.
T Consensus 136 ~~PlllF~~~v~G~PyLi~Kl 156 (158)
T PF04088_consen 136 SKPLLLFLAAVFGLPYLIWKL 156 (158)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 399999999999999998764
No 11
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=25.79 E-value=35 Score=32.20 Aligned_cols=31 Identities=19% Similarity=0.477 Sum_probs=26.7
Q ss_pred CCCCCCcccChhhHHHHHHhhhchhhhhchhcccCc
Q 019545 111 APGDPVWAISSETVNSLVGLSLNFFFVLPLMNSVGI 146 (339)
Q Consensus 111 APgdP~waiqPeTl~~I~~lSlnFFfIlP~ln~~GI 146 (339)
+|+-|+|-.+|+|+++++|-+.+ =.|..+||
T Consensus 148 ~Pp~PaFY~~P~sieDlvd~~v~-----rvLD~lgI 178 (191)
T COG0163 148 MPPMPAFYHKPQSIEDLVDFVVG-----RVLDLLGI 178 (191)
T ss_pred cCCChhhhcCCCCHHHHHHHHHH-----HHHHHhCC
Confidence 89999999999999999997776 45666777
No 12
>PF10251 PEN-2: Presenilin enhancer-2 subunit of gamma secretase; InterPro: IPR019379 This entry is a short, 101 peptide protein, which is the smallest subunit of the gamma-secretase aspartyl protease complex. It catalyses the intra-membrane cleavage of a subset of type I transmembrane proteins. The other active constituents of the complex are presenilin (PS) nicastrin and anterior pharynx defective-1 (APH-1) protein. Presenilin enhancer-2 (PEN-2) adopts a hairpin orientation in the membrane with its N- and C-terminal domains facing the luminal/extracellular space. The C-terminal domain maintains PS stability within the complex [].
Probab=25.63 E-value=65 Score=27.25 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=10.7
Q ss_pred HHHHhhhhhhhhh
Q 019545 197 MFLTNTFLIPYMA 209 (339)
Q Consensus 197 mFlTnaFLLPYmA 209 (339)
+|..|.++||.+=
T Consensus 13 yf~~GFa~LP~lW 25 (94)
T PF10251_consen 13 YFLGGFAFLPFLW 25 (94)
T ss_pred HHHHHHHHhHHHH
Confidence 7888888999873
No 13
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.83 E-value=73 Score=27.93 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhc
Q 019545 236 PIVGLIGGAICLLSTLWALYGR 257 (339)
Q Consensus 236 r~~G~vg~lvgi~sI~wal~~R 257 (339)
=++|++++++|++++++-++.|
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777766666654
No 14
>PF01790 LGT: Prolipoprotein diacylglyceryl transferase; InterPro: IPR001640 Prolipoprotein diacylglyceryl transferase [] is the bacterial enzyme catalysing the first step in lipoprotein biogenesis. It transfers the n-acyl diglyceride group onto what will become the N-terminal cysteine of membrane lipoproteins. This enzyme is an integral membrane protein.; GO: 0016757 transferase activity, transferring glycosyl groups, 0009249 protein lipoylation, 0042158 lipoprotein biosynthetic process, 0016020 membrane
Probab=22.32 E-value=2e+02 Score=27.04 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=44.3
Q ss_pred ccChh--HHHHHHHHHHHHHHHhhhhcccccC-CCcCCCchhHHHHHHHHHhhhhhhhhhhhcccCCCCCCCcccc--cc
Q 019545 153 VLHPM--SEGLFNFVIGWTFMFAPLLFTDCKR-DRYKGSLDVLWGFQMFLTNTFLIPYMAIRLNEACSEDTPRDHS--QL 227 (339)
Q Consensus 153 vvhPv--~eaLFNf~~aW~lmfapLLf~D~r~-qk~~~~l~~lW~~amFlTnaFLLPYmAlR~~~p~~~~~~~k~~--~l 227 (339)
.+||+ .|+++|+...+.+++.-. +|. ++.++ .....+++=|=+.|. -.+-.-.++.. ..
T Consensus 169 ~~hPtqLye~~~~~l~~~~~l~~~~----~~~~~~~~G----------~~~~~yl~~y~~~Rf--~iEf~R~~~~~~~~~ 232 (256)
T PF01790_consen 169 PRHPTQLYEALFNFLILFLLLWWLR----RKRKRRFPG----------QVFGLYLILYGIFRF--FIEFFRGDPRRGFGF 232 (256)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHH----HhccccchH----------HHHHHHHHHHHHHHH--hhhhhccCchhcccC
Confidence 46885 799999887777766322 322 23444 233355666666664 22111111111 11
Q ss_pred cccccCCCchHHHHHHHHHHHHHHH
Q 019545 228 ASVMTNGAPIVGLIGGAICLLSTLW 252 (339)
Q Consensus 228 g~~~~~~Sr~~G~vg~lvgi~sI~w 252 (339)
+. +-+-++++...++|++.+.+
T Consensus 233 ~l---s~~Q~~sl~~i~~g~~~l~~ 254 (256)
T PF01790_consen 233 GL---STAQWLSLALILAGLILLIY 254 (256)
T ss_pred Ch---hHHHHHHHHHHHHHHHHHHH
Confidence 11 24678888888887776654
Done!