Query 019545
Match_columns 339
No_of_seqs 67 out of 69
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 03:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j00_Z Cell division protein F 14.9 1.4E+02 0.0047 23.9 3.5 23 234-256 1-23 (98)
2 4grv_A Neurotensin receptor ty 9.8 3E+02 0.01 25.9 4.8 10 154-163 465-474 (510)
3 1j6r_A Methionine synthase; st 8.5 2.1E+02 0.0071 25.6 2.9 37 110-157 160-197 (214)
4 3zqu_A Probable aromatic acid 8.0 1.5E+02 0.0051 26.4 1.7 32 111-147 162-193 (209)
5 2knc_B Integrin beta-3; transm 7.9 3.8E+02 0.013 20.5 3.8 8 264-271 37-44 (79)
6 2knc_A Integrin alpha-IIB; tra 7.7 3.1E+02 0.011 20.0 3.0 21 238-258 20-42 (54)
7 2l8s_A Integrin alpha-1; trans 7.2 3.4E+02 0.012 19.9 3.0 22 237-258 16-39 (54)
8 4a2n_B Isoprenylcysteine carbo 7.1 1.1E+03 0.037 20.2 6.9 83 165-256 14-98 (194)
9 2koe_A Human cannabinoid recep 6.4 36 0.0012 21.5 -2.4 12 152-163 14-25 (40)
10 2vgp_C Inner centromere protei 6.2 2.4E+02 0.0082 19.7 1.7 40 115-163 2-41 (43)
No 1
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=14.88 E-value=1.4e+02 Score=23.85 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=17.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHh
Q 019545 234 GAPIVGLIGGAICLLSTLWALYG 256 (339)
Q Consensus 234 ~Sr~~G~vg~lvgi~sI~wal~~ 256 (339)
++++.|++.+++.++.++|+..+
T Consensus 1 ~~~~~G~~F~l~Vl~~l~~~~~~ 23 (98)
T 3j00_Z 1 GTRLAGILFLLTVLTTVLVSGWV 23 (98)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeechhhHHHHHHHHHHHHHHH
Confidence 36899998888887777776543
No 2
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=9.81 E-value=3e+02 Score=25.90 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=9.1
Q ss_pred cChhHHHHHH
Q 019545 154 LHPMSEGLFN 163 (339)
Q Consensus 154 vhPv~eaLFN 163 (339)
+||+++++||
T Consensus 465 iNPiIY~~~n 474 (510)
T 4grv_A 465 INPILYNLVS 474 (510)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 4899999998
No 3
>1j6r_A Methionine synthase; structural genomics, TM0269, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.30A {Thermotoga maritima} SCOP: d.173.1.2
Probab=8.53 E-value=2.1e+02 Score=25.55 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=24.7
Q ss_pred CCCCCCCcccChhhHHHHHHhhhchhhhhchhcccCccc-cCCCccChh
Q 019545 110 YAPGDPVWAISSETVNSLVGLSLNFFFVLPLMNSVGIRL-IDAPVLHPM 157 (339)
Q Consensus 110 ~APgdP~waiqPeTl~~I~~lSlnFFfIlP~ln~~GI~~-~~apvvhPv 157 (339)
++||.|.|.++ .|..+-..++ . ..||.+ -++-..+|-
T Consensus 160 ~sPGYpa~~l~---~q~~l~~LL~------~--~IGv~L~TEs~~M~P~ 197 (214)
T 1j6r_A 160 ISPGYGDLPLS---LNKKIAEIFK------E--EVDVNVIEDSYVLVPR 197 (214)
T ss_dssp BCTTSTTSCTT---HHHHHHHHHT------T--TSCCBCCSTTCCCBSS
T ss_pred CCCCCCCCChH---HHHHHHHHhC------C--CcCeEEeCCCCCCCCh
Confidence 59999999553 3333323333 1 679999 888888884
No 4
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=8.02 E-value=1.5e+02 Score=26.42 Aligned_cols=32 Identities=25% Similarity=0.524 Sum_probs=24.7
Q ss_pred CCCCCCcccChhhHHHHHHhhhchhhhhchhcccCcc
Q 019545 111 APGDPVWAISSETVNSLVGLSLNFFFVLPLMNSVGIR 147 (339)
Q Consensus 111 APgdP~waiqPeTl~~I~~lSlnFFfIlP~ln~~GI~ 147 (339)
.|+.|.+--+|+|++++++...+ -+|..+||+
T Consensus 162 ipp~~g~ya~p~~iediv~~vv~-----r~ld~lgi~ 193 (209)
T 3zqu_A 162 LPAAPGFYHQPQSVEDLVDFVVA-----RILNTLGIP 193 (209)
T ss_dssp CCSCCCCTTCCCSHHHHHHHHHH-----HHHHHHTCC
T ss_pred eCCCcccccCCCCHHHHHHHHHH-----HHHHhCCCC
Confidence 56677777799999999875555 777788883
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=7.91 E-value=3.8e+02 Score=20.53 Aligned_cols=8 Identities=50% Similarity=0.713 Sum_probs=4.6
Q ss_pred ChHHHHHH
Q 019545 264 GITERWEF 271 (339)
Q Consensus 264 dla~R~~Y 271 (339)
.+-||-||
T Consensus 37 ~i~DrrE~ 44 (79)
T 2knc_B 37 TIHDRKEF 44 (79)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 35566665
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=7.69 E-value=3.1e+02 Score=20.04 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHH--HHHhcC
Q 019545 238 VGLIGGAICLLSTLW--ALYGRM 258 (339)
Q Consensus 238 ~G~vg~lvgi~sI~w--al~~R~ 258 (339)
+|-++++..++.++| |+|.|.
T Consensus 20 l~GLllL~li~~~LwK~GFFkR~ 42 (54)
T 2knc_A 20 LGGLLLLTILVLAMWKVGFFKRN 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcCcccCC
Confidence 455556666677778 777664
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=7.23 E-value=3.4e+02 Score=19.94 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHH--HHHhcC
Q 019545 237 IVGLIGGAICLLSTLW--ALYGRM 258 (339)
Q Consensus 237 ~~G~vg~lvgi~sI~w--al~~R~ 258 (339)
++|-++++.-++.+.| |+|.|.
T Consensus 16 vl~GLLLL~Lii~~LwK~GFFKR~ 39 (54)
T 2l8s_A 16 AFAGLLLLMLLILALWKIGFFKRP 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHcCcccCC
Confidence 3455556666777788 777765
No 8
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=7.15 E-value=1.1e+03 Score=20.18 Aligned_cols=83 Identities=13% Similarity=-0.064 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhhcccccCCCcCCC--chhHHHHHHHHHhhhhhhhhhhhcccCCCCCCCcccccccccccCCCchHHHHH
Q 019545 165 VIGWTFMFAPLLFTDCKRDRYKGS--LDVLWGFQMFLTNTFLIPYMAIRLNEACSEDTPRDHSQLASVMTNGAPIVGLIG 242 (339)
Q Consensus 165 ~~aW~lmfapLLf~D~r~qk~~~~--l~~lW~~amFlTnaFLLPYmAlR~~~p~~~~~~~k~~~lg~~~~~~Sr~~G~vg 242 (339)
+.+|.++=.|..--++|.++.... .-..+...+-..+.+++|++.++..-|+....+.+ .+ -.++|+++
T Consensus 14 ~~~~~~ir~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p----~~-----~~~~G~~l 84 (194)
T 4a2n_B 14 FIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTAVFSSYLDSFNINLP----DS-----IRLFALIV 84 (194)
T ss_dssp HHHHHHHHHHHHHHHSSSCEEECCSHHHHHHHHHHHHHHHTHHHHHHHSCSGGGGGCCCCC----HH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhccccchHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCc----HH-----HHHHHHHH
Confidence 456777777888777776442221 11223333333445789999998744432111110 11 35788888
Q ss_pred HHHHHHHHHHHHHh
Q 019545 243 GAICLLSTLWALYG 256 (339)
Q Consensus 243 ~lvgi~sI~wal~~ 256 (339)
.++|+..-.|+...
T Consensus 85 ~l~G~~l~~~a~~~ 98 (194)
T 4a2n_B 85 TFLNIGLFTKIHKD 98 (194)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887754
No 9
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=6.37 E-value=36 Score=21.50 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=8.2
Q ss_pred CccChhHHHHHH
Q 019545 152 PVLHPMSEGLFN 163 (339)
Q Consensus 152 pvvhPv~eaLFN 163 (339)
+.+||++++++|
T Consensus 14 s~lNPiIY~~~~ 25 (40)
T 2koe_A 14 STVNPIIYALRS 25 (40)
T ss_dssp HHSSTTTTBTTB
T ss_pred HHHHHHHHHHcc
Confidence 345788887765
No 10
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=6.22 E-value=2.4e+02 Score=19.71 Aligned_cols=40 Identities=23% Similarity=0.443 Sum_probs=21.2
Q ss_pred CCcccChhhHHHHHHhhhchhhhhchhcccCccccCCCccChhHHHHHH
Q 019545 115 PVWAISSETVNSLVGLSLNFFFVLPLMNSVGIRLIDAPVLHPMSEGLFN 163 (339)
Q Consensus 115 P~waiqPeTl~~I~~lSlnFFfIlP~ln~~GI~~~~apvvhPv~eaLFN 163 (339)
|.|| |.+.+++.+.-=.- |-..++-+..++..|-.|-+|+
T Consensus 2 P~WA-~~~~L~~~l~~Q~~--------~p~D~d~iFG~I~pp~LeeiF~ 41 (43)
T 2vgp_C 2 PAWA-SGNLLTQAIRQQYY--------KPIDVDRMYGTIDSPKLEELFN 41 (43)
T ss_dssp CGGG-SHHHHHHHHHHHHH--------SCCCHHHHTTTSCCCCHHHHC-
T ss_pred Cccc-chHHHHHHHHHHHc--------cCCCHHHHcCCCCCcCHHHHhc
Confidence 6788 45555444322210 1224555667777776777775
Done!